AlfalfaGEDB | Msa0457340

M. sativa cultivar zhongmu-4 / Msa0457340

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457340	KEH34295.1	53.416	161	43	5	1	129	311	471	3.93e-31	138
Msa0457340	KEH34295.1	76.253	459	73	5	137	595	49	471	0.0	658

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457340	sp\|Q9LUZ4\|C3H66_ARATH	40.566	424	214	15	165	571	186	588	4.55e-77	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457340	A0A072V7Z8	53.416	161	43	5	1	129	311	471	1.88e-31	138
Msa0457340	A0A072V7Z8	76.253	459	73	5	137	595	49	471	0.0	658

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TFs/TRs:

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Gene ID	Type	Classification
Msa0457340	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457340	MtrunA17_Chr3g0105151	83.265	245	33	1	351	595	1	237	4.20e-141	409
Msa0457340	MtrunA17_Chr3g0105151	53.416	161	43	5	1	129	77	237	1.09e-37	139
Msa0457340	MtrunA17_Chr1g0187591	52.408	519	160	12	127	577	154	653	8.53e-141	423
Msa0457340	MtrunA17_Chr1g0187591	71.552	116	33	0	1	116	461	576	2.96e-43	164
Msa0457340	MtrunA17_Chr3g0105121	59.474	380	122	6	187	565	8	356	7.71e-138	405
Msa0457340	MtrunA17_Chr3g0105121	49.194	124	38	3	1	115	242	349	9.49e-20	91.3
Msa0457340	MtrunA17_Chr3g0105131	54.293	396	143	10	155	549	147	505	4.37e-116	355
Msa0457340	MtrunA17_Chr3g0105131	83.784	111	16	1	1	111	397	505	5.82e-53	189
Msa0457340	MtrunA17_Chr5g0430211	41.561	551	228	19	125	595	154	690	3.65e-102	325
Msa0457340	MtrunA17_Chr5g0430211	33.158	190	75	6	1	143	520	704	1.25e-12	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457340	AT5G58620.1	40.566	424	214	15	165	571	186	588	4.63e-78	259
Msa0457340	AT2G40140.2	38.821	407	199	11	170	570	196	558	8.08e-71	239
Msa0457340	AT2G40140.1	38.821	407	199	11	170	570	196	558	8.08e-71	239
Msa0457340	AT3G55980.1	39.461	408	184	15	170	567	193	547	6.03e-70	236
Msa0457340	AT3G55980.2	39.506	405	188	14	170	567	260	614	1.81e-69	237
Msa0457340	AT2G41900.1	46.296	270	120	6	167	424	240	496	4.28e-66	229
Msa0457340	AT5G12850.1	36.967	422	194	17	165	531	234	638	1.67e-65	227
Msa0457340	AT5G07500.1	58.197	122	50	1	170	291	34	154	1.79e-46	164
Msa0457340	AT2G25900.2	61.818	110	41	1	184	293	86	194	2.27e-43	158
Msa0457340	AT2G25900.1	61.818	110	41	1	184	293	86	194	2.27e-43	158

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Find 143 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCTTCATGATTAGT+AGG	0.402491	3_3:-52024663	None:intergenic
AAACATTGCTAGTATCGTCT+AGG	0.570465	3_3:-52025031	None:intergenic
AAACTAAGAAGAAAGATTAT+CGG	0.403018	3_3:+52023926	Msa0457340:CDS
AAATTAGAATGGTCCATCTG+CGG	0.658574	3_3:+52022125	Msa0457340:CDS
AACACAAACCAGCAACTTTG+GGG	0.627450	3_3:+52021915	Msa0457340:CDS
AACTGGTATAAGCCTTCAAC+AGG	0.439127	3_3:-52024308	None:intergenic
AAGCAGAAACAACATGTAGG+TGG	0.652560	3_3:+52023898	Msa0457340:CDS
AAGGATAGCCCCAAAGTTGC+TGG	0.379907	3_3:-52021923	None:intergenic
AAGGGTAGCCACACAGTTGT+TGG	0.489642	3_3:-52024737	None:intergenic
AAGGTAGATTGGTCTATCCC+CGG	0.610542	3_3:+52024966	Msa0457340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATTGGAAAGATCAGA+AGG	-	chr3_3:52021945-52021964	None:intergenic	30.0%
GCTATGAACTCAATAAAATG+AGG	+	chr3_3:52022147-52022166	Msa0457340:CDS	30.0%
ATGAGGAGATCTTATTCTTT+CGG	+	chr3_3:52022164-52022183	Msa0457340:CDS	30.0%
TACTACCAGGATATAGTATA+TGG	+	chr3_3:52022540-52022559	Msa0457340:intron	30.0%
CTGTATATATATCTCGTATC+AGG	-	chr3_3:52022740-52022759	None:intergenic	30.0%
AATCAAAGTTACTCTACATG+AGG	-	chr3_3:52022870-52022889	None:intergenic	30.0%
AACTAACTCTCTATGAAATC+TGG	+	chr3_3:52022910-52022929	Msa0457340:intron	30.0%
AAACTTGGAAAACAATGCAA+AGG	-	chr3_3:52023083-52023102	None:intergenic	30.0%
CTATGAAAGTTCCTGAAAAA+GGG	+	chr3_3:52023270-52023289	Msa0457340:intron	30.0%
CAAGACAATAGAAACAATTC+TGG	-	chr3_3:52023682-52023701	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	52021900	52025223	52021900	ID=Msa0457340;Name=Msa0457340
chr3_3	mRNA	52021900	52025223	52021900	ID=Msa0457340-mRNA-1;Parent=Msa0457340;Name=Msa0457340-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0\|0\|1\|1\|1\|2\|0\|595
chr3_3	exon	52021900	52022322	52021900	ID=Msa0457340-mRNA-1:exon:9990;Parent=Msa0457340-mRNA-1
chr3_3	exon	52023859	52025223	52023859	ID=Msa0457340-mRNA-1:exon:9991;Parent=Msa0457340-mRNA-1
chr3_3	CDS	52021900	52022322	52021900	ID=Msa0457340-mRNA-1:cds;Parent=Msa0457340-mRNA-1
chr3_3	CDS	52023859	52025223	52023859	ID=Msa0457340-mRNA-1:cds;Parent=Msa0457340-mRNA-1

Gene Sequence

>Msa0457340

ATGCAGGTGCATCAGAACACAAACCAGCAACTTTGGGGCTATCCTTCTGATCTTTCCAATTCAAATGTGAGTGGATCACAACAATTCAGGGTTGATGCCTTTTCGAAACGGAGCCAGAGCTTTATTGAGAGCAATAGCGAGGTGAGCTTCAATTCTTTGCTTCCATCTGCTACCTTAGTTGCCATGGAGCCTTCTACTTTCTCTGATTGGGGCTCCCCTGATGGAAAATTAGAATGGTCCATCTGCGGCTATGAACTCAATAAAATGAGGAGATCTTATTCTTTCGGCTTTCAAAACAGAAGTATCACTTCAACTGCTGCATTTAATATCGATGATCCAGATGTTGAAGATCAACGGCAATGCTATAATCCGGACGCGGTTTCGTCTTTGCCAGAGAAATTGTACATGGAGCATAAGCAGAAGAACCAAGATTGCCTCAAGGGAGAAGGTTCCGAAATGGAGAAGCAGAAACAACATGTAGGTGGACCTCAAACTAAGAAGAAAGATTATCGGATCGATCGATCCCTACCTGACATAAAGGATAGGATATATATTACAGATGAATTTAGGATGTATGAATTCAAAGTGAAGCTTTGTTCATGGAATAATGTTCCTCATGAGTGGACAGAATGTCCCTTTGCTCATTCTGGGGAAATTGCAAGGCGCCGTGATCCGAAGAAATATTATTACAGCTGTGTCTATTGTCATGAATTTCCGAATGGATCATGCAGTAGAGGGGATACATGTCAATATTCACATGGTGTTTTTGAGTCCGGGCTGCATCCTAGTCGATACAGAACAAAGCTTTGCAATAATGGAACTAAATGCACAAGAGAAATTTGCTTCTTTGCTCACAAACCCGAGGAGCTTCGCCTGTTGAAGGCTTATACCAGTTCTGCTTTTCCTTCACCTACATCAAATTCAAATTCAAATTCACCTAGTGTTTCTTCAATGGATTCTTTCACATTGATCTCTCCGTCTTCTTTGATACAATCTTCGTCGACACTGCCTTGGACTCCGTCTGCAACATCATCTCCTGCAGGAGGAACCATGTGGCAGACTCCGACTCAGATTCATACTACAGTCCCCACACTTCAGATGCCAAGCAACAGATTGAAAACTGCATTGAATGCTAGAGATAATACTGATCTAGACATGAAATTTCTCGAAAATCACCATATGCCTAAGCCAATGATAGAAGAGTCAAACAGGCCTGCAGGAGTAAATCCTACTAATCATGAAGACATTTTCAGGTCATCAATACAATCTTCGAAAGACATGCTGGTGGATCAGAATGTGAACCAACAACTGTGTGGCTACCCTTCTGACCATACCAATTCAGATGCGATTGGATCACCACATCTCAGGGTTGATCCATTAATGAATTCAAGATATGATGCCATTTCAAAGTGGAGCCAGAGCTTTTTCGAGTGCAGCAGCGTGGCAAGCTTTAATTCCAAGCTTCCTTCTGCTACCTCAGTTGCATTAGAACCTTCTACTGCCTTCTCTGATTGGTACTCCACTGATAGAAAGGTAGATTGGTCTATCCCCGGTGATAAACTCAATGAAATGACGACATCTTATTCATTCGGCTTCCTAGACGATACTAGCAATGTTTCAACAATGGCTGCTGCATCAAATGTTGATGAGAATTATTCATTATTAAGCCAGGAATCTTGGGTTAGCTCACTTGTGAAGGATGATGATCCAACATTGGAATCTGATCAACATTGTGTTGAAGTTGAATATCAACTGCAATGCCATAATCCGGACGATGTTCCATCCTAG

Protein sequence

>Msa0457340

MQVHQNTNQQLWGYPSDLSNSNVSGSQQFRVDAFSKRSQSFIESNSEVSFNSLLPSATLVAMEPSTFSDWGSPDGKLEWSICGYELNKMRRSYSFGFQNRSITSTAAFNIDDPDVEDQRQCYNPDAVSSLPEKLYMEHKQKNQDCLKGEGSEMEKQKQHVGGPQTKKKDYRIDRSLPDIKDRIYITDEFRMYEFKVKLCSWNNVPHEWTECPFAHSGEIARRRDPKKYYYSCVYCHEFPNGSCSRGDTCQYSHGVFESGLHPSRYRTKLCNNGTKCTREICFFAHKPEELRLLKAYTSSAFPSPTSNSNSNSPSVSSMDSFTLISPSSLIQSSSTLPWTPSATSSPAGGTMWQTPTQIHTTVPTLQMPSNRLKTALNARDNTDLDMKFLENHHMPKPMIEESNRPAGVNPTNHEDIFRSSIQSSKDMLVDQNVNQQLCGYPSDHTNSDAIGSPHLRVDPLMNSRYDAISKWSQSFFECSSVASFNSKLPSATSVALEPSTAFSDWYSTDRKVDWSIPGDKLNEMTTSYSFGFLDDTSNVSTMAAASNVDENYSLLSQESWVSSLVKDDDPTLESDQHCVEVEYQLQCHNPDDVPS*