AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458200 MtrunA17_Chr3g0105291 92.478 1130 76 2 3 1131 2 1123 0.0 2144
Msa0458200 MtrunA17_Chr5g0430361 45.909 1100 454 24 23 1018 5 1067 0.0 894
Msa0458200 MtrunA17_Chr5g0407211 41.648 437 219 10 602 1014 1 425 1.87e-108 346
Msa0458200 MtrunA17_Chr7g0270101 43.675 419 216 9 603 1012 383 790 3.06e-108 357
Msa0458200 MtrunA17_Chr5g0407251 41.531 431 216 10 602 1008 1 419 2.32e-107 343
Msa0458200 MtrunA17_Chr4g0012501 70.124 241 62 4 7 237 11 251 7.71e-105 329
Msa0458200 MtrunA17_Chr3g0134811 37.179 468 218 10 603 1008 338 791 3.92e-95 322
Msa0458200 MtrunA17_Chr3g0134821 40.995 422 219 9 603 1008 425 832 1.13e-94 321
Msa0458200 MtrunA17_Chr1g0205451 39.709 413 237 7 604 1009 606 1013 8.16e-84 300
Msa0458200 MtrunA17_Chr2g0316251 36.520 408 253 6 604 1008 762 1166 1.90e-81 291
Msa0458200 MtrunA17_Chr1g0185491 34.681 470 284 9 550 1009 765 1221 7.60e-79 285
Msa0458200 MtrunA17_Chr3g0134851 34.660 427 183 9 606 1008 110 464 4.11e-59 211
Msa0458200 MtrunA17_Chr7g0259981 33.229 319 188 7 702 1018 7 302 3.98e-56 197
Msa0458200 MtrunA17_Chr7g0265211 27.485 513 281 12 569 1008 453 947 2.74e-43 171
Msa0458200 MtrunA17_Chr1g0182481 28.369 423 238 11 615 991 472 875 2.35e-42 168
Msa0458200 MtrunA17_Chr1g0179841 27.373 453 254 10 615 1006 362 800 1.80e-40 161
Msa0458200 MtrunA17_Chr4g0055731 24.952 525 313 18 499 1008 11 469 7.50e-32 131
Msa0458200 MtrunA17_Chr4g0027811 23.975 488 249 13 577 1009 159 579 1.54e-28 122
Msa0458200 MtrunA17_Chr4g0028111 25.445 393 211 10 655 984 189 562 9.02e-27 117
Msa0458200 MtrunA17_Chr4g0025251 30.268 261 154 9 770 1009 449 702 1.47e-22 104
Msa0458200 MtrunA17_Chr2g0320451 32.447 188 114 4 828 1013 852 1028 2.99e-21 100
Msa0458200 MtrunA17_Chr2g0320451 24.535 269 144 3 629 849 489 746 1.03e-17 89.0
Msa0458200 MtrunA17_Chr3g0101951 30.986 142 92 4 16 153 394 533 1.97e-14 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458200 AT5G58610.3 36.794 1098 564 27 12 1049 23 1050 0.0 673
Msa0458200 AT5G58610.8 37.287 1054 536 24 12 1008 23 1008 0.0 668
Msa0458200 AT5G58610.2 37.287 1054 536 24 12 1008 23 1008 0.0 668
Msa0458200 AT5G58610.5 36.832 1086 556 27 24 1049 26 1041 0.0 666
Msa0458200 AT5G58610.7 36.832 1086 556 27 24 1049 26 1041 0.0 665
Msa0458200 AT5G58610.6 36.313 1085 537 29 24 1049 26 1015 0.0 635
Msa0458200 AT5G58610.1 36.313 1085 537 29 24 1049 26 1015 0.0 634
Msa0458200 AT5G58610.10 36.028 1002 516 24 12 956 23 956 0.0 600
Msa0458200 AT5G58610.9 36.061 990 508 24 24 956 26 947 0.0 592
Msa0458200 AT5G58610.11 34.979 952 494 24 24 918 26 909 2.29e-175 539
Msa0458200 AT5G58610.4 36.053 760 395 17 312 1049 129 819 1.62e-147 464
Msa0458200 AT1G05380.3 39.618 419 241 7 604 1014 520 934 9.66e-91 317
Msa0458200 AT1G05380.1 39.618 419 241 7 604 1014 520 934 9.66e-91 317
Msa0458200 AT1G05380.2 39.618 419 241 7 604 1014 520 934 9.66e-91 317
Msa0458200 AT3G14980.3 35.041 488 298 9 540 1017 554 1032 6.31e-87 304
Msa0458200 AT5G36740.5 31.229 602 358 17 454 1018 384 966 7.61e-87 306
Msa0458200 AT5G36740.1 31.229 602 358 17 454 1018 384 966 7.61e-87 306
Msa0458200 AT3G14980.5 35.041 488 298 9 540 1017 509 987 1.48e-86 305
Msa0458200 AT3G14980.6 35.041 488 298 9 540 1017 554 1032 2.26e-86 305
Msa0458200 AT3G14980.1 35.041 488 298 9 540 1017 554 1032 2.26e-86 305
Msa0458200 AT3G14980.2 35.041 488 298 9 540 1017 554 1032 2.26e-86 305
Msa0458200 AT5G36740.4 30.556 612 359 18 454 1018 231 823 4.59e-83 293
Msa0458200 AT4G14920.3 36.429 420 262 5 604 1021 580 996 5.64e-76 274
Msa0458200 AT4G14920.2 36.855 407 252 5 604 1008 580 983 1.26e-75 273
Msa0458200 AT4G14920.1 36.855 407 252 5 604 1008 580 983 1.26e-75 273
Msa0458200 AT5G36670.4 28.803 618 366 19 454 1018 384 980 1.12e-73 267
Msa0458200 AT5G36670.5 28.803 618 366 19 454 1018 384 980 1.12e-73 267
Msa0458200 AT5G36670.3 28.185 628 367 20 454 1018 231 837 6.92e-70 254
Msa0458200 AT5G36670.1 28.185 628 367 20 454 1018 384 990 8.95e-70 255
Msa0458200 AT5G36670.2 30.361 527 318 16 454 950 384 891 1.27e-69 252
Msa0458200 AT5G36740.2 30.361 527 318 16 454 950 384 891 1.27e-69 252
Msa0458200 AT5G36740.3 30.361 527 318 16 454 950 384 891 1.27e-69 252
Msa0458200 AT5G63900.1 42.484 306 145 10 711 1008 258 540 2.55e-66 234
Msa0458200 AT3G14980.4 32.992 391 243 9 540 920 554 935 5.69e-59 220
Msa0458200 AT2G27980.1 29.646 452 237 10 640 1026 637 1072 3.54e-47 184
Msa0458200 AT2G37520.1 28.736 435 229 11 631 1006 401 813 1.29e-43 172
Msa0458200 AT3G53680.1 28.345 441 246 10 631 1018 418 841 1.37e-42 169
Msa0458200 AT3G53680.2 28.345 441 246 10 631 1018 420 843 1.47e-42 169
Msa0458200 AT2G36720.1 27.097 465 240 12 615 1006 533 971 1.49e-37 153
Msa0458200 AT2G36720.2 27.097 465 240 12 615 1006 533 971 1.49e-37 153

Find 274 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTCTTCTTCTATTATT+TGG 0.106047 3_3:-53549490 None:intergenic
GGGCACCGTACTGTGCTTTC+TGG 0.111625 3_3:+53549928 Msa0458200:CDS
AAGGTCTCTTTCTTCTCTTC+TGG 0.125974 3_3:-53547485 None:intergenic
ATTCAGAAATCGACTATTTC+TGG 0.151862 3_3:+53549586 Msa0458200:CDS
AACCAAGACAGAACATTTAA+AGG 0.177176 3_3:-53549850 None:intergenic
CCAGTTGGCAAAACCGAATT+TGG 0.185947 3_3:-53552718 None:intergenic
CACATAACTTCCGGATTTAC+TGG 0.222960 3_3:-53550682 None:intergenic
CTCTTCTTGCAGAGATTTGA+TGG 0.228176 3_3:+53551127 Msa0458200:CDS
CGGTATCGATAAGGCAAATT+TGG 0.229065 3_3:+53548582 Msa0458200:CDS
AACTTAATCGAATGAATTTC+CGG 0.235232 3_3:+53551841 Msa0458200:CDS
GAAGCGTAGGATTTATAATT+AGG 0.235350 3_3:+53554203 Msa0458200:exon
ACCAAGTGCCAATATCTTTC+TGG 0.242341 3_3:+53550047 Msa0458200:CDS
GAGAATATTCTGAATGATAA+TGG 0.245574 3_3:+53548203 Msa0458200:CDS
TAATAGTAAAAGTGGATTAT+TGG 0.263495 3_3:+53551034 Msa0458200:CDS
CATCAGAAGCTCACGCAATT+AGG 0.270532 3_3:+53552526 Msa0458200:intron
GGGTTTCTATTCTGTACTTC+TGG 0.274483 3_3:+53551863 Msa0458200:CDS
AATTGTGATCTTTCAAAGTT+TGG 0.278158 3_3:-53552625 None:intergenic
CCGAAAATGGTCTTGGTATA+AGG 0.282380 3_3:+53549212 Msa0458200:CDS
CATCGCTTCGGCGCTTTGGC+AGG 0.290256 3_3:-53549753 None:intergenic
ATTTGTTCCGTTTGCCGCTT+TGG 0.297414 3_3:+53550180 Msa0458200:CDS
GATACATGGACCGGCGCTTT+TGG 0.305649 3_3:+53552589 Msa0458200:CDS
GCAAGAAGAGGATTCCTTTA+GGG 0.310158 3_3:-53551114 None:intergenic
AACTCTTCTCCGTCCGAAAA+TGG 0.313482 3_3:+53549199 Msa0458200:CDS
TTCATTTCATCACCCAAATC+AGG 0.315241 3_3:-53548449 None:intergenic
GATCTTGCATTATTTGTATC+TGG 0.322209 3_3:-53550095 None:intergenic
CCTGCAATCGGGCAGATAAA+AGG 0.323806 3_3:+53549404 Msa0458200:CDS
AGTGAGTGTTTCAAGTGTTT+TGG 0.328028 3_3:+53548247 Msa0458200:CDS
TTCTGACTCCAAGGCAACTA+TGG 0.328818 3_3:+53549012 Msa0458200:CDS
TAAGTAAACGTGGGAGGATT+AGG 0.331696 3_3:+53548288 Msa0458200:CDS
TGAAATGAAGGTCGGAATTC+AGG 0.335691 3_3:+53548463 Msa0458200:CDS
GATGGACTAAGAGGCAGATT+TGG 0.337811 3_3:-53549259 None:intergenic
GAGAAATGTGATCTTAAGTA+TGG 0.340078 3_3:+53548335 Msa0458200:CDS
CGAAACCCTCCTCCATTGAT+AGG 0.345385 3_3:-53547652 None:intergenic
TGCAAGAAGAGGATTCCTTT+AGG 0.345444 3_3:-53551115 None:intergenic
GAGAGAGTAGGTGTCAATAA+AGG 0.347102 3_3:+53547418 Msa0458200:five_prime_UTR
GCTTGGTAAACTTCAGAAAC+TGG 0.348392 3_3:-53552880 None:intergenic
TGAATGGTCGAGGTATTTAA+AGG 0.352359 3_3:-53549616 None:intergenic
CCTCCTCCATTGATAGGGTT+TGG 0.357205 3_3:-53547646 None:intergenic
TTGTCCGCACCCACTGAAAC+TGG 0.359349 3_3:-53550963 None:intergenic
AGGTCTCTTTCTTCTCTTCT+GGG 0.360060 3_3:-53547484 None:intergenic
CACCTTCCCACCAAGCTTCC+TGG 0.361570 3_3:-53548379 None:intergenic
CATGTTGTTACCAAGGTCTA+AGG 0.373440 3_3:+53549885 Msa0458200:CDS
AAATATTCCCTCTCCAAATT+CGG 0.374447 3_3:+53552705 Msa0458200:CDS
GAAGCGATGAATCAACTCTA+AGG 0.378096 3_3:+53549767 Msa0458200:CDS
GAGTGTGACGTTTGTTTACT+TGG 0.378154 3_3:+53547440 Msa0458200:five_prime_UTR
TGGTCAGTGTAGCAACTATT+AGG 0.379578 3_3:+53551901 Msa0458200:CDS
TGGAAACATCTTGCATATCT+TGG 0.388953 3_3:+53549055 Msa0458200:CDS
AATGCAAGATCACAAGTCTA+AGG 0.396731 3_3:+53550107 Msa0458200:CDS
GATTAGGCCAGTGCCTCCTT+TGG 0.397024 3_3:+53548304 Msa0458200:CDS
GAACTTGATAATAGTAAAAG+TGG 0.398807 3_3:+53551026 Msa0458200:CDS
ACCATCGGCCAGAAAGATAT+TGG 0.399541 3_3:-53550055 None:intergenic
TCGCATATTAATGGATGAAT+TGG 0.403985 3_3:+53552119 Msa0458200:CDS
GAGAAGAATCTCTGTTTCTC+TGG 0.404714 3_3:-53549526 None:intergenic
TGGAATGTGTCGCATATTAA+TGG 0.405995 3_3:+53552110 Msa0458200:CDS
ATTACTAGCACTACTGCTTC+CGG 0.409786 3_3:-53552851 None:intergenic
CCTATTGCAATGGATTCCAT+TGG 0.410556 3_3:-53549128 None:intergenic
TGTTGTTGGTCCACATGAAT+TGG 0.411126 3_3:-53554068 None:intergenic
GGCACCGTACTGTGCTTTCT+GGG 0.413489 3_3:+53549929 Msa0458200:CDS
TTTGTCCATCGTGTCGATGC+GGG 0.414181 3_3:+53550396 Msa0458200:CDS
GTACCCAAAGCAAATTCAAC+GGG 0.416005 3_3:+53550423 Msa0458200:CDS
AATTCACCTGATTCCATCTC+TGG 0.418223 3_3:-53548752 None:intergenic
AAGAGGGGTTTCTGGGATCA+TGG 0.419147 3_3:+53548129 Msa0458200:CDS
TTTCATTCTGGCAATGTTGT+TGG 0.419236 3_3:-53554082 None:intergenic
TGATGGTACCCGGAAAATCT+AGG 0.425301 3_3:-53552663 None:intergenic
ACTTAATCGAATGAATTTCC+GGG 0.425591 3_3:+53551842 Msa0458200:CDS
TTTCTGGGATCATGGCATCC+AGG 0.426138 3_3:+53548137 Msa0458200:CDS
TCATAAGACGTGTCTTGGTC+TGG 0.426619 3_3:+53550242 Msa0458200:CDS
GCAGCCCTTCAAAGTCTGTT+AGG 0.427952 3_3:+53550936 Msa0458200:CDS
CGAGTATCTCCTCTAGTTGT+GGG 0.428093 3_3:+53549298 Msa0458200:CDS
CTTCTTCTATTATTTGGAGG+TGG 0.430595 3_3:-53549484 None:intergenic
TTCCATCTCTGGAAGTTTCA+AGG 0.432471 3_3:-53548741 None:intergenic
AACCTTTAAATGTTCTGTCT+TGG 0.434230 3_3:+53549848 Msa0458200:CDS
TGTTGTTCCTCCAGCTGAAA+AGG 0.435339 3_3:+53548811 Msa0458200:CDS
CCGGCTTTCCACATAACTTC+CGG 0.435342 3_3:-53550691 None:intergenic
CCAATGGAATCCATTGCAAT+AGG 0.435671 3_3:+53549128 Msa0458200:CDS
TCCTTCGAATTTCATGCTAC+TGG 0.436416 3_3:+53550009 Msa0458200:CDS
CTATTGCAATGGATTCCATT+GGG 0.438749 3_3:-53549127 None:intergenic
CCTCTTCTTCTATTATTTGG+AGG 0.441510 3_3:-53549487 None:intergenic
TCTTAGGGTCCTTGGAGATA+AGG 0.443751 3_3:+53552041 Msa0458200:intron
GCATCCTGCCGGTGACTGTC+AGG 0.444200 3_3:+53549234 Msa0458200:CDS
AAACTTCCAGAGATGGAATC+AGG 0.444680 3_3:+53548746 Msa0458200:CDS
GGCAACTATGGCATCTTTGA+AGG 0.445667 3_3:+53549024 Msa0458200:CDS
ATGACGACGATGCTGAAATC+TGG 0.447510 3_3:-53552088 None:intergenic
AGTAGAGATACCAGTAAATC+CGG 0.447861 3_3:+53550672 Msa0458200:CDS
CGAATAAATCAACTGCAAAT+CGG 0.448638 3_3:+53549698 Msa0458200:CDS
TTTGTGGAGACACTTGATAA+TGG 0.452655 3_3:+53548670 Msa0458200:CDS
GTTCACACTGAATGCATGTA+AGG 0.456612 3_3:-53550466 None:intergenic
TGAATGAGAAGAAGGATTTG+TGG 0.456943 3_3:+53548654 Msa0458200:CDS
CGTATCTTCCGGTATCGATA+AGG 0.457774 3_3:+53548573 Msa0458200:CDS
AGTGGGAGCCACGAGGGAAA+TGG 0.457967 3_3:+53548525 Msa0458200:CDS
TCTTCTTGAGTGCATGTTTG+TGG 0.458079 3_3:-53549381 None:intergenic
TGGTGACTACTTGGCTGTTA+CGG 0.458322 3_3:+53548700 Msa0458200:CDS
GGACAAAACCATTCACCATC+AGG 0.458765 3_3:-53550380 None:intergenic
TCATGAGGAAAATGTTGATC+AGG 0.461489 3_3:+53549636 Msa0458200:CDS
CACTCAAGAAGACCTGCAAT+CGG 0.463785 3_3:+53549392 Msa0458200:CDS
TTAGAGTTGATTCATCGCTT+CGG 0.468082 3_3:-53549765 None:intergenic
GATTCATCGCTTCGGCGCTT+TGG 0.468963 3_3:-53549757 None:intergenic
CAAAGATGCCATAGTTGCCT+TGG 0.470190 3_3:-53549020 None:intergenic
AGGTGAATTATTATCTGAAA+AGG 0.470293 3_3:+53548766 Msa0458200:CDS
AGGCAAGAGGAAGACGCCTT+TGG 0.471117 3_3:-53549814 None:intergenic
GATTGAGGAGTCGTATCTTC+CGG 0.473378 3_3:+53548562 Msa0458200:CDS
GAAGGCGATAATGATAATCT+TGG 0.474333 3_3:+53553748 Msa0458200:CDS
TCAGGATTGGGATGAAGTTA+CGG 0.474444 3_3:+53548499 Msa0458200:CDS
AGAATATTCTGAATGATAAT+GGG 0.475569 3_3:+53548204 Msa0458200:CDS
TTTAAATATGAAACTGCATA+CGG 0.477041 3_3:-53549557 None:intergenic
ATCGTTGGATCAACAAATGA+TGG 0.477086 3_3:+53552924 Msa0458200:CDS
TCTGGAGAGAAATGAAGATC+TGG 0.483681 3_3:+53551881 Msa0458200:CDS
GATAGACAAAAGAGAATCGT+TGG 0.484937 3_3:+53552909 Msa0458200:CDS
CAAAATGAAGTTTCATGCAA+CGG 0.485051 3_3:+53548848 Msa0458200:CDS
AAAAGTGCTCTCTTGTAAAG+TGG 0.486293 3_3:+53554135 Msa0458200:CDS
CTACTTGGCTGTTACGGTAA+AGG 0.487026 3_3:+53548706 Msa0458200:CDS
ACATATTGCTTAACAGCATC+GGG 0.489875 3_3:-53548983 None:intergenic
AATGCGGATTACTCAGGATT+GGG 0.491002 3_3:+53548487 Msa0458200:CDS
CAAATTTGCCTTATCGATAC+CGG 0.491105 3_3:-53548581 None:intergenic
ATTTAAAGTCAAATTGTTCG+TGG 0.491332 3_3:+53548927 Msa0458200:CDS
AACTCAACCAAAGGAGGCAC+TGG 0.491829 3_3:-53548311 None:intergenic
ATTCTGAATGATAATGGGTT+GGG 0.491960 3_3:+53548209 Msa0458200:CDS
AACATCTTGCATATCTTGGA+TGG 0.495598 3_3:+53549059 Msa0458200:CDS
TCTCCGTCCGAAAATGGTCT+TGG 0.497129 3_3:+53549205 Msa0458200:CDS
CAGTAAATCCGGAAGTTATG+TGG 0.497239 3_3:+53550683 Msa0458200:CDS
TTCGCCTCCAAAGCGGCAAA+CGG 0.498884 3_3:-53550187 None:intergenic
TATTCTGAATGATAATGGGT+TGG 0.503416 3_3:+53548208 Msa0458200:CDS
CCTCCAAATAATAGAAGAAG+AGG 0.505734 3_3:+53549487 Msa0458200:CDS
CATCAAATCTCTGCAAGAAG+AGG 0.506536 3_3:-53551126 None:intergenic
AGTAAAGTTTCCTATTGCAA+TGG 0.509470 3_3:-53549138 None:intergenic
TTAAAGGTTTATGATGTGAA+AGG 0.510336 3_3:-53549834 None:intergenic
GAAGTTTCATGCAACGGTGC+TGG 0.510570 3_3:+53548854 Msa0458200:CDS
AAATGCGGATTACTCAGGAT+TGG 0.511598 3_3:+53548486 Msa0458200:CDS
TCACGTTCAATAACTATCCC+TGG 0.512761 3_3:-53548155 None:intergenic
GATATTGGCACTTGGTCTGA+TGG 0.512828 3_3:-53550040 None:intergenic
GGGATGAAGTTACGGAGAAG+TGG 0.513297 3_3:+53548507 Msa0458200:CDS
GCTGTCCTAACAGACTTTGA+AGG 0.513374 3_3:-53550941 None:intergenic
AAAGCTGAAAATCAATGAAA+GGG 0.513454 3_3:+53547697 Msa0458200:CDS
GAAGCTCCAAACCCTATCAA+TGG 0.514872 3_3:+53547640 Msa0458200:exon
GCCAATATCTTTCTGGCCGA+TGG 0.514917 3_3:+53550054 Msa0458200:CDS
CACATATTGCTTAACAGCAT+CGG 0.516322 3_3:-53548984 None:intergenic
TTGAGTGATGATTTAACAAG+TGG 0.516650 3_3:+53549661 Msa0458200:CDS
CGAAAACAAGATGCTATCTC+CGG 0.516683 3_3:+53552832 Msa0458200:CDS
GTTAGGACAGCCAGTTTCAG+TGG 0.517338 3_3:+53550953 Msa0458200:CDS
GGAGGTAGTTGGTGACTACT+TGG 0.518838 3_3:+53548691 Msa0458200:CDS
ATCTGTTCAGATGGACTAAG+AGG 0.518857 3_3:-53549268 None:intergenic
ATGGACATTGAATGAGAAGA+AGG 0.520484 3_3:+53548646 Msa0458200:CDS
TACCAGGAAGCTTGGTGGGA+AGG 0.523101 3_3:+53548377 Msa0458200:CDS
TGTTCCGTTTGCCGCTTTGG+AGG 0.523366 3_3:+53550183 Msa0458200:CDS
AGGATCTCCCTGATGGTGAA+TGG 0.525582 3_3:+53550372 Msa0458200:intron
TCAGGAAATGCGGATTACTC+AGG 0.525665 3_3:+53548481 Msa0458200:CDS
CCGAGTATCTCCTCTAGTTG+TGG 0.526543 3_3:+53549297 Msa0458200:CDS
GTAGCTGAAGTACCCCTTGT+TGG 0.527201 3_3:+53552063 Msa0458200:CDS
GGCCTTGAAACTTCCAGAGA+TGG 0.529956 3_3:+53548739 Msa0458200:CDS
CAAGAAGAGGATTCCTTTAG+GGG 0.530407 3_3:-53551113 None:intergenic
TTCTGGGATCATGGCATCCA+GGG 0.530488 3_3:+53548138 Msa0458200:CDS
CAAAGCTGAAAATCAATGAA+AGG 0.530613 3_3:+53547696 Msa0458200:CDS
TGAATGTTTCAAGCCCCTAA+AGG 0.534803 3_3:+53551100 Msa0458200:CDS
TTTAAAGTCAAATTGTTCGT+GGG 0.535401 3_3:+53548928 Msa0458200:CDS
CTAGACGAAGGAAGGCGAAA+GGG 0.537831 3_3:+53554174 Msa0458200:CDS
GAAAATCAATGAAAGGGTTG+AGG 0.539230 3_3:+53547703 Msa0458200:CDS
ATCATCTGAAAGCAGAAGGA+TGG 0.539714 3_3:+53549449 Msa0458200:CDS
AGATTTCAGCATCGTCGTCA+TGG 0.541657 3_3:+53552090 Msa0458200:CDS
TCTTGTAAAGTGGAGTGGAC+TGG 0.545279 3_3:+53554145 Msa0458200:CDS
GAAACCCTCCTCCATTGATA+GGG 0.545425 3_3:-53547651 None:intergenic
ATCAAATGAAAGGGTGCCAA+AGG 0.545984 3_3:+53549798 Msa0458200:CDS
CCGGAAGTTATGTGGAAAGC+CGG 0.546646 3_3:+53550691 Msa0458200:CDS
CCAAACCCTATCAATGGAGG+AGG 0.547670 3_3:+53547646 Msa0458200:exon
TCTACCACAGTGGGAACAGC+AGG 0.548324 3_3:-53552568 None:intergenic
CGGTTCTGAATCTGTTCAGA+TGG 0.549079 3_3:-53549277 None:intergenic
TTCCCACTGTGGTAGATACA+TGG 0.549468 3_3:+53552575 Msa0458200:CDS
ATGTAAATTACCAGGAAGCT+TGG 0.550640 3_3:+53548369 Msa0458200:CDS
AATTTGCCGTGATTGGTGAA+TGG 0.552298 3_3:+53548627 Msa0458200:CDS
CATGTATAGGATCTCCCTGA+TGG 0.557404 3_3:+53550365 Msa0458200:intron
TGCTCTCTTGTAAAGTGGAG+TGG 0.557520 3_3:+53554140 Msa0458200:CDS
AAATTACCAGGAAGCTTGGT+GGG 0.557807 3_3:+53548373 Msa0458200:CDS
CAATGTCCATTCACCAATCA+CGG 0.558049 3_3:-53548633 None:intergenic
TTCTGGCACATGATGGTACC+CGG 0.559347 3_3:-53552673 None:intergenic
TCATTTCATCACCCAAATCA+GGG 0.559352 3_3:-53548448 None:intergenic
AGTGTGACGTTTGTTTACTT+GGG 0.560097 3_3:+53547441 Msa0458200:five_prime_UTR
AAGCGATGAATCAACTCTAA+GGG 0.560264 3_3:+53549768 Msa0458200:CDS
GAATGATACGTGTGATGGAA+TGG 0.560826 3_3:+53548406 Msa0458200:CDS
TCATATCATAAGACGTGTCT+TGG 0.562434 3_3:+53550237 Msa0458200:CDS
ATCGGAAGCGAAAACGCTTG+AGG 0.563012 3_3:+53549716 Msa0458200:CDS
ATTTGGAACCTGACAGTCAC+CGG 0.565159 3_3:-53549242 None:intergenic
ACTCAAGAAGACCTGCAATC+GGG 0.566161 3_3:+53549393 Msa0458200:CDS
GGGACTGAGATCAAATGAAA+GGG 0.568884 3_3:+53549789 Msa0458200:CDS
GTGTGTAGATGTAAATTACC+AGG 0.569182 3_3:+53548361 Msa0458200:CDS
CTGCGGAAAAGACTGTGAAA+AGG 0.570141 3_3:+53550716 Msa0458200:CDS
CTGTCCTAACAGACTTTGAA+GGG 0.570641 3_3:-53550940 None:intergenic
TGGTATTCCACAATGGCTTG+AGG 0.570911 3_3:-53549361 None:intergenic
GGGGACTGAGATCAAATGAA+AGG 0.571574 3_3:+53549788 Msa0458200:CDS
TTGCAATGGATTCCATTGGG+TGG 0.572732 3_3:-53549124 None:intergenic
TCATCTGCCACTGCAACAGA+TGG 0.573346 3_3:-53549325 None:intergenic
TTAGGACAGCCAGTTTCAGT+GGG 0.574149 3_3:+53550954 Msa0458200:CDS
ACATCTTGCATATCTTGGAT+GGG 0.574776 3_3:+53549060 Msa0458200:CDS
GGAACCTGACAGTCACCGGC+AGG 0.574813 3_3:-53549238 None:intergenic
ATTAATGGATGAATTGGAGA+AGG 0.579634 3_3:+53552125 Msa0458200:CDS
ATCAAGTTCACAACTAGAGT+CGG 0.580167 3_3:-53551012 None:intergenic
AGAAATCATCTGAAAGCAGA+AGG 0.585694 3_3:+53549445 Msa0458200:CDS
GCCAGTAGCATGAAATTCGA+AGG 0.587705 3_3:-53550010 None:intergenic
CTGAAATCTGGTACCAACAA+GGG 0.587971 3_3:-53552076 None:intergenic
GGCAAAACCGAATTTGGAGA+GGG 0.589581 3_3:-53552712 None:intergenic
ACGTCTTATGATATGAAGAC+GGG 0.594381 3_3:-53550230 None:intergenic
ACAGCCAGTTTCAGTGGGTG+CGG 0.594757 3_3:+53550959 Msa0458200:CDS
TAAATTACCAGGAAGCTTGG+TGG 0.595722 3_3:+53548372 Msa0458200:CDS
GCCAGAAAGATATTGGCACT+TGG 0.596693 3_3:-53550048 None:intergenic
TACAGGTACAAGCCACCCAA+TGG 0.597089 3_3:+53549112 Msa0458200:CDS
TCTGGGCGAATAACTCATGA+AGG 0.597089 3_3:+53549946 Msa0458200:CDS
CTTTGAAAATCCAAAAGCGC+CGG 0.597314 3_3:-53552599 None:intergenic
GGATGAAGTTACGGAGAAGT+GGG 0.600692 3_3:+53548508 Msa0458200:CDS
TTATTGTCCTCAAGCCATTG+TGG 0.600860 3_3:+53549354 Msa0458200:CDS
TGTGCTTGCTTCTGACTCCA+AGG 0.601206 3_3:+53549003 Msa0458200:CDS
TGTACCCAAAGCAAATTCAA+CGG 0.605230 3_3:+53550422 Msa0458200:CDS
CACGTCTTATGATATGAAGA+CGG 0.605602 3_3:-53550231 None:intergenic
CCACACAGTCGTTTGCGTCA+AGG 0.607220 3_3:+53550144 Msa0458200:CDS
GGACGGAGAAGAGTTCAGCA+TGG 0.608196 3_3:-53549191 None:intergenic
CACTTGATAATGGAGGTAGT+TGG 0.609618 3_3:+53548680 Msa0458200:CDS
ATGGGAAATTGACATTGACC+TGG 0.610133 3_3:+53549078 Msa0458200:CDS
GGTGTACTCTAGACGAAGGA+AGG 0.610377 3_3:+53554166 Msa0458200:CDS
TGATTTGGGTGATGAAATGA+AGG 0.612944 3_3:+53548451 Msa0458200:CDS
TTCTCAAACTCAACCAAAGG+AGG 0.613689 3_3:-53548317 None:intergenic
CGGAGAAGTGGGAGCCACGA+GGG 0.613910 3_3:+53548519 Msa0458200:CDS
GCTGAAATCTGGTACCAACA+AGG 0.615347 3_3:-53552077 None:intergenic
TTGGGTGATGAAATGAAGGT+CGG 0.615563 3_3:+53548455 Msa0458200:CDS
GGGGCTTCCATCTGTTGCAG+TGG 0.616057 3_3:+53549318 Msa0458200:CDS
AAATACCTCGACCATTCATG+AGG 0.616259 3_3:+53549621 Msa0458200:CDS
TAAGACGTGTCTTGGTCTGG+AGG 0.616442 3_3:+53550245 Msa0458200:CDS
TATGTGGAAAGCCGGTTCTG+CGG 0.616945 3_3:+53550699 Msa0458200:CDS
TAGACGAAGGAAGGCGAAAG+GGG 0.617367 3_3:+53554175 Msa0458200:CDS
GAAAGGGGAACATGAAGCGT+AGG 0.617607 3_3:+53554190 Msa0458200:CDS
GATGGAAGCCCCACAACTAG+AGG 0.618341 3_3:-53549307 None:intergenic
CTTGGTATAAGGCATCCTGC+CGG 0.619801 3_3:+53549223 Msa0458200:CDS
TTTATGATGTGAAAGGCAAG+AGG 0.620240 3_3:-53549827 None:intergenic
GGCGGAGCAACCAATTCATG+TGG 0.622069 3_3:+53554058 Msa0458200:intron
TTCGCCCAGAAAGCACAGTA+CGG 0.622172 3_3:-53549933 None:intergenic
AGATAAGAGCGATCTACCAT+CGG 0.623826 3_3:-53550070 None:intergenic
ATGTTTGTGGTATTCCACAA+TGG 0.624693 3_3:-53549368 None:intergenic
CAAATCCCGCATCGACACGA+TGG 0.625156 3_3:-53550401 None:intergenic
TCTAGACGAAGGAAGGCGAA+AGG 0.625198 3_3:+53554173 Msa0458200:CDS
CTTAATCGAATGAATTTCCG+GGG 0.625891 3_3:+53551843 Msa0458200:CDS
ATGCAACGGTGCTGGTCAAG+TGG 0.630055 3_3:+53548862 Msa0458200:CDS
TGGCAAAACCGAATTTGGAG+AGG 0.630456 3_3:-53552713 None:intergenic
ACTGTGGTAGATACATGGAC+CGG 0.633569 3_3:+53552580 Msa0458200:CDS
AAAAGCAACCATTTCCCTCG+TGG 0.637947 3_3:-53548533 None:intergenic
CCACAACTAGAGGAGATACT+CGG 0.637983 3_3:-53549297 None:intergenic
AAACGCTTGAGGAATTCAGA+TGG 0.640084 3_3:+53549727 Msa0458200:CDS
CTTCAGCTACCTTATCTCCA+AGG 0.642106 3_3:-53552050 None:intergenic
ATCGGGTCATTAAGTAAACG+TGG 0.643173 3_3:+53548278 Msa0458200:CDS
CGTGTGATGGAATGGAGGAG+AGG 0.644455 3_3:+53548414 Msa0458200:CDS
GTGGAGACACTTGATAATGG+AGG 0.645022 3_3:+53548673 Msa0458200:CDS
CATTTCTCAAACTCAACCAA+AGG 0.645043 3_3:-53548320 None:intergenic
GAAGCTCACGCAATTAGGAG+TGG 0.645058 3_3:+53552531 Msa0458200:intron
GCAAGATCACAAGTCTAAGG+AGG 0.646340 3_3:+53550110 Msa0458200:CDS
CCTTGACGCAAACGACTGTG+TGG 0.650813 3_3:-53550144 None:intergenic
GAGTATCTCCTCTAGTTGTG+GGG 0.652442 3_3:+53549299 Msa0458200:CDS
GTCCATGTATCTACCACAGT+GGG 0.654636 3_3:-53552577 None:intergenic
TGATACGTGTGATGGAATGG+AGG 0.655143 3_3:+53548409 Msa0458200:CDS
AGCGATGAATCAACTCTAAG+GGG 0.656119 3_3:+53549769 Msa0458200:CDS
ACAGCAACATGTTGTTACCA+AGG 0.659467 3_3:+53549878 Msa0458200:CDS
TGAAATCTGGTACCAACAAG+GGG 0.667284 3_3:-53552075 None:intergenic
GCTCCAAACCCTATCAATGG+AGG 0.667765 3_3:+53547643 Msa0458200:exon
GACAAAACCATTCACCATCA+GGG 0.668378 3_3:-53550379 None:intergenic
AGGTCGGAATTCAGGAAATG+CGG 0.672442 3_3:+53548471 Msa0458200:CDS
TTTACCTGCTGTTCCCACTG+TGG 0.676231 3_3:+53552564 Msa0458200:CDS
TGGGTGCGGACAATCTAACA+TGG 0.678752 3_3:+53550973 Msa0458200:CDS
GAAGTACAGAATAGAAACCC+CGG 0.680909 3_3:-53551860 None:intergenic
AAAGAAGTTCGCCTCCAAAG+CGG 0.687855 3_3:-53550194 None:intergenic
GTTGTGAATGATACGTGTGA+TGG 0.689929 3_3:+53548401 Msa0458200:CDS
CAAACCCTATCAATGGAGGA+GGG 0.690346 3_3:+53547647 Msa0458200:exon
GGTCATTAAGTAAACGTGGG+AGG 0.691179 3_3:+53548282 Msa0458200:CDS
ACGGAGAAGTGGGAGCCACG+AGG 0.694599 3_3:+53548518 Msa0458200:CDS
TGTTATCGACTGTGTCACCA+TGG 0.695665 3_3:+53553777 Msa0458200:CDS
TCGGGTCATTAAGTAAACGT+GGG 0.701219 3_3:+53548279 Msa0458200:CDS
GACTGGTGTACTCTAGACGA+AGG 0.706505 3_3:+53554162 Msa0458200:CDS
TGGGAAATTGACATTGACCT+GGG 0.718631 3_3:+53549079 Msa0458200:CDS
TACCCAAAGCAAATTCAACG+GGG 0.719753 3_3:+53550424 Msa0458200:CDS
ACCCAAAGCAAATTCAACGG+GGG 0.738354 3_3:+53550425 Msa0458200:CDS
GGTCCATGTATCTACCACAG+TGG 0.749610 3_3:-53552578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGATTTTTTTTTTGT+GGG + chr3_3:53547769-53547788 Msa0458200:intron 10.0%
!!! ATTTTTATGTTTATTTTGAT+GGG + chr3_3:53547840-53547859 Msa0458200:intron 10.0%
!! AACATATAACAAAATATAAA+AGG - chr3_3:53551225-53551244 None:intergenic 10.0%
!! TAAATTGTATAAATGTTTAT+AGG - chr3_3:53551727-53551746 None:intergenic 10.0%
!! AAACAAAAAAGAGTAAAATA+AGG - chr3_3:53547543-53547562 None:intergenic 15.0%
!!! GTTCTTGATTTTTTTTTTAT+GGG + chr3_3:53547746-53547765 Msa0458200:intron 15.0%
!!! GTTTTTTGATTTTTTTTTTG+TGG + chr3_3:53547768-53547787 Msa0458200:intron 15.0%
!!! GATTTTTATGTTTATTTTGA+TGG + chr3_3:53547839-53547858 Msa0458200:intron 15.0%
!!! AGTTTGAATTTTTAATTTTC+AGG + chr3_3:53548094-53548113 Msa0458200:intron 15.0%
!!! TTTGTTATATGTTCATAATA+AGG + chr3_3:53551232-53551251 Msa0458200:intron 15.0%
!! TTGTTATATGTTCATAATAA+GGG + chr3_3:53551233-53551252 Msa0458200:intron 15.0%
!! AAACAAAATAACAGAAAAAA+GGG - chr3_3:53551429-53551448 None:intergenic 15.0%
!! AAAACAAAATAACAGAAAAA+AGG - chr3_3:53551430-53551449 None:intergenic 15.0%
!! AAACAAAATAACAGAAAAAA+GGG - chr3_3:53551429-53551448 None:intergenic 15.0%
!!! AAAATTTTCATAGTTCTAAT+AGG + chr3_3:53551623-53551642 Msa0458200:intron 15.0%
!!! TTAACTATTTCATTTTTCTT+AGG + chr3_3:53552025-53552044 Msa0458200:intron 15.0%
!!! TAACTATTTCATTTTTCTTA+GGG + chr3_3:53552026-53552045 Msa0458200:intron 15.0%
!! AATAAATGAAAGCAAAAATT+TGG - chr3_3:53552352-53552371 None:intergenic 15.0%
!! AATATATCTTGTAATCTATT+TGG + chr3_3:53553223-53553242 Msa0458200:intron 15.0%
!! TTTATAATTAGGAGTAAAAA+TGG + chr3_3:53554214-53554233 Msa0458200:three_prime_UTR 15.0%
!!! TGTTTTTGATTTGATAAGTA+AGG - chr3_3:53547507-53547526 None:intergenic 20.0%
!!! GGTTCTTGATTTTTTTTTTA+TGG + chr3_3:53547745-53547764 Msa0458200:intron 20.0%
!!! TTTTTGTTTTGATTGGTTTA+TGG + chr3_3:53547891-53547910 Msa0458200:intron 20.0%
!!! TTTTGTTTTGATTGGTTTAT+GGG + chr3_3:53547892-53547911 Msa0458200:intron 20.0%
!!! GTATTTTGATTTGAAGTTTT+AGG + chr3_3:53548055-53548074 Msa0458200:intron 20.0%
!!! ATTTGAAGTTTTAGGTTTAT+GGG + chr3_3:53548063-53548082 Msa0458200:intron 20.0%
!! AGAATATTCTGAATGATAAT+GGG + chr3_3:53548204-53548223 Msa0458200:CDS 20.0%
!!! TTCATTTTTCTCAAAATTGA+TGG - chr3_3:53548891-53548910 None:intergenic 20.0%
!! TTTAAATATGAAACTGCATA+CGG - chr3_3:53549560-53549579 None:intergenic 20.0%
!! GAAAAATGAAATCCAATTAT+CGG - chr3_3:53550346-53550365 None:intergenic 20.0%
!! AATGACATATACAGAAATAT+TGG - chr3_3:53550777-53550796 None:intergenic 20.0%
!!! TAATAGTAAAAGTGGATTAT+TGG + chr3_3:53551034-53551053 Msa0458200:CDS 20.0%
!! TGTTATATGTTCATAATAAG+GGG + chr3_3:53551234-53551253 Msa0458200:intron 20.0%
!! GAAACAAAATAACAGAAAAA+AGG - chr3_3:53551480-53551499 None:intergenic 20.0%
!!! AACAGATTTTGTTTGTTTAT+TGG + chr3_3:53551501-53551520 Msa0458200:intron 20.0%
!! ACATTTATACAATTTACCAA+TGG + chr3_3:53551731-53551750 Msa0458200:intron 20.0%
!! AATGAAATAGTTAATCAAGA+CGG - chr3_3:53552019-53552038 None:intergenic 20.0%
!! GATGATAAAAATGAATATGA+GGG - chr3_3:53552190-53552209 None:intergenic 20.0%
!! TGATGATAAAAATGAATATG+AGG - chr3_3:53552191-53552210 None:intergenic 20.0%
!! TCTTAATTAATTAGTTCCAA+TGG + chr3_3:53552242-53552261 Msa0458200:intron 20.0%
!!! TGATTTTGTTATCATTATCA+AGG + chr3_3:53552314-53552333 Msa0458200:intron 20.0%
!! TTTAATCCTTACAAAAATGA+TGG + chr3_3:53552968-53552987 Msa0458200:intron 20.0%
!!! TATTAAATATGTTGATGATG+TGG + chr3_3:53553118-53553137 Msa0458200:intron 20.0%
!!! TAAGTTTTTTTCATCTTTAG+TGG + chr3_3:53553640-53553659 Msa0458200:intron 20.0%
!! AAGAAATTACATAATACACA+AGG - chr3_3:53554003-53554022 None:intergenic 20.0%
!!! TGATAATTTGATTGGTTTAT+AGG + chr3_3:53554037-53554056 Msa0458200:intron 20.0%
!! GTTTTATACGAAAGGATTAT+AGG - chr3_3:53547568-53547587 None:intergenic 25.0%
! AAAGCTGAAAATCAATGAAA+GGG + chr3_3:53547697-53547716 Msa0458200:CDS 25.0%
!!! TGTTTATTTTGATGGGTTTA+TGG + chr3_3:53547847-53547866 Msa0458200:intron 25.0%
!!! GTTTATTTTGATGGGTTTAT+GGG + chr3_3:53547848-53547867 Msa0458200:intron 25.0%
!!! TGCAAAGTTTTTGTTTTGAT+TGG + chr3_3:53547884-53547903 Msa0458200:intron 25.0%
!!! GATTTGAAGTTTTAGGTTTA+TGG + chr3_3:53548062-53548081 Msa0458200:intron 25.0%
! GAGAATATTCTGAATGATAA+TGG + chr3_3:53548203-53548222 Msa0458200:CDS 25.0%
! AGGTGAATTATTATCTGAAA+AGG + chr3_3:53548766-53548785 Msa0458200:CDS 25.0%
!!! GAAACTTCATTTTGAAACTT+AGG - chr3_3:53548842-53548861 None:intergenic 25.0%
!!! ATTTTGAGAAAAATGAACAC+AGG + chr3_3:53548894-53548913 Msa0458200:CDS 25.0%
!! ATTTAAAGTCAAATTGTTCG+TGG + chr3_3:53548927-53548946 Msa0458200:CDS 25.0%
!! TTTAAAGTCAAATTGTTCGT+GGG + chr3_3:53548928-53548947 Msa0458200:CDS 25.0%
! TTAAAGGTTTATGATGTGAA+AGG - chr3_3:53549837-53549856 None:intergenic 25.0%
!!! GGATTTCATTTTTCATGTAT+AGG + chr3_3:53550352-53550371 Msa0458200:intron 25.0%
!! GAACTTGATAATAGTAAAAG+TGG + chr3_3:53551026-53551045 Msa0458200:CDS 25.0%
!!! AAAATGTTTTATTCAGTCGA+TGG + chr3_3:53551150-53551169 Msa0458200:CDS 25.0%
! TATCCATCAAAATATGTTCA+CGG + chr3_3:53551184-53551203 Msa0458200:intron 25.0%
! GGTTGCAATTTCAAAATATA+TGG - chr3_3:53551554-53551573 None:intergenic 25.0%
!! TTTAAAATAATCGACAGATG+TGG + chr3_3:53551691-53551710 Msa0458200:intron 25.0%
! AAAGACAGATATATATCCAT+TGG - chr3_3:53551750-53551769 None:intergenic 25.0%
! TGAATTATTGATGCATCTTT+CGG + chr3_3:53551778-53551797 Msa0458200:intron 25.0%
! AGTTCATAAACACATATATC+AGG - chr3_3:53551810-53551829 None:intergenic 25.0%
!! TATGTGTTTATGAACTTTTC+AGG + chr3_3:53551814-53551833 Msa0458200:intron 25.0%
! AACTTAATCGAATGAATTTC+CGG + chr3_3:53551841-53551860 Msa0458200:CDS 25.0%
! TATTGTTATCATGAAGAAGT+AGG + chr3_3:53551930-53551949 Msa0458200:intron 25.0%
!!! TGATTGCAATTTTGAGATTA+TGG + chr3_3:53552265-53552284 Msa0458200:intron 25.0%
! CAAAATCATAGAATACAGTT+CGG - chr3_3:53552302-53552321 None:intergenic 25.0%
!!! TACTTTTTATCATACTTTCC+TGG + chr3_3:53552405-53552424 Msa0458200:intron 25.0%
!!! ATTCCTTTTCAATTTTTTCC+TGG + chr3_3:53552440-53552459 Msa0458200:intron 25.0%
! AATTGTGATCTTTCAAAGTT+TGG - chr3_3:53552628-53552647 None:intergenic 25.0%
!! GAATATTTGCTAAAAACTTC+TGG - chr3_3:53552693-53552712 None:intergenic 25.0%
! TATGTAATTTGATTGCCTAT+TGG + chr3_3:53552741-53552760 Msa0458200:intron 25.0%
!! GTAATGAAAGTTAATTTTCC+TGG + chr3_3:53553165-53553184 Msa0458200:intron 25.0%
!!! TATCTTATAAAAGAAGTACC+AGG - chr3_3:53553186-53553205 None:intergenic 25.0%
!!! GCATATATCTATTTCTGTTA+TGG + chr3_3:53553304-53553323 Msa0458200:intron 25.0%
! CTGACATGAATAATGATTTA+TGG + chr3_3:53553541-53553560 Msa0458200:intron 25.0%
!! TAAATTGCTTAGACGATTTT+TGG + chr3_3:53553674-53553693 Msa0458200:intron 25.0%
!!! TAATTTGATTGGTTTATAGG+CGG + chr3_3:53554040-53554059 Msa0458200:intron 25.0%
!! CAATGTAGGTTTTATACGAA+AGG - chr3_3:53547576-53547595 None:intergenic 30.0%
!! GTTTTGTTACTGAACAATGT+AGG - chr3_3:53547590-53547609 None:intergenic 30.0%
! TCTTCGTATTTTGTTGAAAC+AGG - chr3_3:53547612-53547631 None:intergenic 30.0%
CAAAGCTGAAAATCAATGAA+AGG + chr3_3:53547696-53547715 Msa0458200:CDS 30.0%
TGACTGTTATGATGTTGAAA+AGG + chr3_3:53547813-53547832 Msa0458200:intron 30.0%
!!! TGATTGGTTTATGGGTTTTT+AGG + chr3_3:53547900-53547919 Msa0458200:intron 30.0%
!!! GATTGGTTTATGGGTTTTTA+GGG + chr3_3:53547901-53547920 Msa0458200:intron 30.0%
AGGTTCCAACAATCAATAAT+GGG - chr3_3:53548017-53548036 None:intergenic 30.0%
! ATTATTGATTGTTGGAACCT+GGG + chr3_3:53548017-53548036 Msa0458200:intron 30.0%
!! TATTCTGAATGATAATGGGT+TGG + chr3_3:53548208-53548227 Msa0458200:CDS 30.0%
!! ATTCTGAATGATAATGGGTT+GGG + chr3_3:53548209-53548228 Msa0458200:CDS 30.0%
GAGAAATGTGATCTTAAGTA+TGG + chr3_3:53548335-53548354 Msa0458200:CDS 30.0%
!!! GTTGCTTTTTGAATTGATTG+AGG + chr3_3:53548547-53548566 Msa0458200:CDS 30.0%
CAAAATGAAGTTTCATGCAA+CGG + chr3_3:53548848-53548867 Msa0458200:CDS 30.0%
! CATCTTTGAAGGAAAAAGTA+TGG + chr3_3:53549035-53549054 Msa0458200:CDS 30.0%
AGTAAAGTTTCCTATTGCAA+TGG - chr3_3:53549141-53549160 None:intergenic 30.0%
ACACCTCTTCTTCTATTATT+TGG - chr3_3:53549493-53549512 None:intergenic 30.0%
ATTCAGAAATCGACTATTTC+TGG + chr3_3:53549586-53549605 Msa0458200:CDS 30.0%
! ATCAACATTTTCCTCATGAA+TGG - chr3_3:53549635-53549654 None:intergenic 30.0%
TTGAGTGATGATTTAACAAG+TGG + chr3_3:53549661-53549680 Msa0458200:CDS 30.0%
CGAATAAATCAACTGCAAAT+CGG + chr3_3:53549698-53549717 Msa0458200:CDS 30.0%
AACCTTTAAATGTTCTGTCT+TGG + chr3_3:53549848-53549867 Msa0458200:CDS 30.0%
AACCAAGACAGAACATTTAA+AGG - chr3_3:53549853-53549872 None:intergenic 30.0%
GATCTTGCATTATTTGTATC+TGG - chr3_3:53550098-53550117 None:intergenic 30.0%
ATGAAAGCGGATATATGTAT+CGG - chr3_3:53550507-53550526 None:intergenic 30.0%
ATGATTCAGCAATATGAAAG+CGG - chr3_3:53550520-53550539 None:intergenic 30.0%
ATCAAAATCAAAAGATGTCC+AGG - chr3_3:53550563-53550582 None:intergenic 30.0%
!! TTAGGTTGATAAAGATGACA+TGG - chr3_3:53550627-53550646 None:intergenic 30.0%
TGGCTAAACTCAATAAACAA+GGG - chr3_3:53550757-53550776 None:intergenic 30.0%
TTGGCTAAACTCAATAAACA+AGG - chr3_3:53550758-53550777 None:intergenic 30.0%
! ATTTTTATCAATGCTTGCAC+TGG + chr3_3:53550794-53550813 Msa0458200:intron 30.0%
TGACATTGCATGTTATAACT+TGG + chr3_3:53550857-53550876 Msa0458200:intron 30.0%
ACAACCTTTGTGTAAAAAAC+TGG + chr3_3:53551322-53551341 Msa0458200:intron 30.0%
CAACCTTTGTGTAAAAAACT+GGG + chr3_3:53551323-53551342 Msa0458200:intron 30.0%
!!! TTACCCAGTTTTTTACACAA+AGG - chr3_3:53551329-53551348 None:intergenic 30.0%
TTTGTGTAAAAAACTGGGTA+AGG + chr3_3:53551328-53551347 Msa0458200:intron 30.0%
ATACAATACACCAAAATGGT+GGG + chr3_3:53551355-53551374 Msa0458200:intron 30.0%
!! TGAGCAAATTTTGTTTGTTC+CGG + chr3_3:53551449-53551468 Msa0458200:intron 30.0%
TTAGCAGATATGATATCATC+AGG - chr3_3:53551575-53551594 None:intergenic 30.0%
ACTTAATCGAATGAATTTCC+GGG + chr3_3:53551842-53551861 Msa0458200:CDS 30.0%
! GTTTTTAATGCCTTCTGTAA+TGG + chr3_3:53551993-53552012 Msa0458200:intron 30.0%
! TCGCATATTAATGGATGAAT+TGG + chr3_3:53552119-53552138 Msa0458200:CDS 30.0%
! ATTAATGGATGAATTGGAGA+AGG + chr3_3:53552125-53552144 Msa0458200:CDS 30.0%
TCATTATCAAGGTTGACTAA+TGG + chr3_3:53552325-53552344 Msa0458200:intron 30.0%
AAGCCAGGAAAAAATTGAAA+AGG - chr3_3:53552446-53552465 None:intergenic 30.0%
!!! AATTTTTTCCTGGCTTTCTA+TGG + chr3_3:53552450-53552469 Msa0458200:intron 30.0%
AAAAAAAACCATAGAAAGCC+AGG - chr3_3:53552461-53552480 None:intergenic 30.0%
AGTGTATATTAGTGAGAAAG+TGG - chr3_3:53552488-53552507 None:intergenic 30.0%
! CTATACTTTCCTAGATTTTC+CGG + chr3_3:53552654-53552673 Msa0458200:CDS 30.0%
! TATACTTTCCTAGATTTTCC+GGG + chr3_3:53552655-53552674 Msa0458200:CDS 30.0%
AAATATTCCCTCTCCAAATT+CGG + chr3_3:53552705-53552724 Msa0458200:CDS 30.0%
CAATCAAATTACATACCAGT+TGG - chr3_3:53552736-53552755 None:intergenic 30.0%
TGTAAGGATTAAATAGACAG+AGG - chr3_3:53552961-53552980 None:intergenic 30.0%
!! TTAACGCCATCATTTTTGTA+AGG - chr3_3:53552977-53552996 None:intergenic 30.0%
AATAACAATACGACTGTACA+GGG - chr3_3:53553102-53553121 None:intergenic 30.0%
TAATAACAATACGACTGTAC+AGG - chr3_3:53553103-53553122 None:intergenic 30.0%
AAGTGTCTGTTATGTATCAA+TGG + chr3_3:53553426-53553445 Msa0458200:intron 30.0%
AGTGTCTGTTATGTATCAAT+GGG + chr3_3:53553427-53553446 Msa0458200:intron 30.0%
GTCATTGCTGAAAGTAAAAA+TGG + chr3_3:53553453-53553472 Msa0458200:intron 30.0%
TGCTGAAAGTAAAAATGGAA+AGG + chr3_3:53553458-53553477 Msa0458200:intron 30.0%
! ATGTCAGCACTTTTATTAGA+TGG - chr3_3:53553528-53553547 None:intergenic 30.0%
!! AGAAGTACTGCAAAAATATC+AGG - chr3_3:53553728-53553747 None:intergenic 30.0%
!! TATTTTTGCAGTACTTCTGA+AGG + chr3_3:53553730-53553749 Msa0458200:intron 30.0%
GTTGAGACTGATAATTTGAT+TGG + chr3_3:53554029-53554048 Msa0458200:intron 30.0%
GAAGCGTAGGATTTATAATT+AGG + chr3_3:53554203-53554222 Msa0458200:exon 30.0%
AGTGTGACGTTTGTTTACTT+GGG + chr3_3:53547441-53547460 Msa0458200:five_prime_UTR 35.0%
GAAAATCAATGAAAGGGTTG+AGG + chr3_3:53547703-53547722 Msa0458200:CDS 35.0%
GGTAATGTCGATATTCTTTC+TGG + chr3_3:53547724-53547743 Msa0458200:intron 35.0%
!!! TGATGGGTTTATGGGTTTTT+AGG + chr3_3:53547856-53547875 Msa0458200:intron 35.0%
!! GATGGGTTTATGGGTTTTTA+GGG + chr3_3:53547857-53547876 Msa0458200:intron 35.0%
!!! TTTTTAGGGTTCTTGCAATG+AGG + chr3_3:53547915-53547934 Msa0458200:intron 35.0%
CACTTGTTTACAGAAAGAAG+TGG + chr3_3:53547946-53547965 Msa0458200:intron 35.0%
TTACAGAAAGAAGTGGTATC+AGG + chr3_3:53547953-53547972 Msa0458200:intron 35.0%
CAGGTTCCAACAATCAATAA+TGG - chr3_3:53548018-53548037 None:intergenic 35.0%
! CATTATTGATTGTTGGAACC+TGG + chr3_3:53548016-53548035 Msa0458200:intron 35.0%
! TTATTGATTGTTGGAACCTG+GGG + chr3_3:53548018-53548037 Msa0458200:intron 35.0%
!!! TAATGGGTTGGGTAATTTTG+TGG + chr3_3:53548220-53548239 Msa0458200:CDS 35.0%
!! AGTGAGTGTTTCAAGTGTTT+TGG + chr3_3:53548247-53548266 Msa0458200:CDS 35.0%
!! AGTGTTTCAAGTGTTTTGGA+TGG + chr3_3:53548251-53548270 Msa0458200:CDS 35.0%
!! AGTGTTTTGGATGGTGATAT+CGG + chr3_3:53548260-53548279 Msa0458200:CDS 35.0%
CATTTCTCAAACTCAACCAA+AGG - chr3_3:53548323-53548342 None:intergenic 35.0%
GTGTGTAGATGTAAATTACC+AGG + chr3_3:53548361-53548380 Msa0458200:CDS 35.0%
ATGTAAATTACCAGGAAGCT+TGG + chr3_3:53548369-53548388 Msa0458200:CDS 35.0%
TCATTTCATCACCCAAATCA+GGG - chr3_3:53548451-53548470 None:intergenic 35.0%
TTCATTTCATCACCCAAATC+AGG - chr3_3:53548452-53548471 None:intergenic 35.0%
! TGATTTGGGTGATGAAATGA+AGG + chr3_3:53548451-53548470 Msa0458200:CDS 35.0%
CAAATTTGCCTTATCGATAC+CGG - chr3_3:53548584-53548603 None:intergenic 35.0%
GTATGATGTGCGACAAAAAA+AGG + chr3_3:53548604-53548623 Msa0458200:CDS 35.0%
AAAAAGGAATTTGCCGTGAT+TGG + chr3_3:53548620-53548639 Msa0458200:CDS 35.0%
ATGGACATTGAATGAGAAGA+AGG + chr3_3:53548646-53548665 Msa0458200:CDS 35.0%
TGAATGAGAAGAAGGATTTG+TGG + chr3_3:53548654-53548673 Msa0458200:CDS 35.0%
TTTGTGGAGACACTTGATAA+TGG + chr3_3:53548670-53548689 Msa0458200:CDS 35.0%
! TACGGTAAAGGAAGTTTTCT+CGG + chr3_3:53548718-53548737 Msa0458200:CDS 35.0%
ACATATTGCTTAACAGCATC+GGG - chr3_3:53548986-53549005 None:intergenic 35.0%
CACATATTGCTTAACAGCAT+CGG - chr3_3:53548987-53549006 None:intergenic 35.0%
TGGAAACATCTTGCATATCT+TGG + chr3_3:53549055-53549074 Msa0458200:CDS 35.0%
AACATCTTGCATATCTTGGA+TGG + chr3_3:53549059-53549078 Msa0458200:CDS 35.0%
ACATCTTGCATATCTTGGAT+GGG + chr3_3:53549060-53549079 Msa0458200:CDS 35.0%
ACCTGGGTAGTAAAAAATAC+AGG + chr3_3:53549095-53549114 Msa0458200:CDS 35.0%
!!! ACCTGTATTTTTTACTACCC+AGG - chr3_3:53549099-53549118 None:intergenic 35.0%
! CTATTGCAATGGATTCCATT+GGG - chr3_3:53549130-53549149 None:intergenic 35.0%
! CCTTATACCAAGACCATTTT+CGG - chr3_3:53549215-53549234 None:intergenic 35.0%
ATGTTTGTGGTATTCCACAA+TGG - chr3_3:53549371-53549390 None:intergenic 35.0%
AGAAATCATCTGAAAGCAGA+AGG + chr3_3:53549445-53549464 Msa0458200:CDS 35.0%
CTTCTTCTATTATTTGGAGG+TGG - chr3_3:53549487-53549506 None:intergenic 35.0%
CCTCTTCTTCTATTATTTGG+AGG - chr3_3:53549490-53549509 None:intergenic 35.0%
CCTCCAAATAATAGAAGAAG+AGG + chr3_3:53549487-53549506 Msa0458200:CDS 35.0%
! TGAATGGTCGAGGTATTTAA+AGG - chr3_3:53549619-53549638 None:intergenic 35.0%
TCATGAGGAAAATGTTGATC+AGG + chr3_3:53549636-53549655 Msa0458200:CDS 35.0%
! TTAGAGTTGATTCATCGCTT+CGG - chr3_3:53549768-53549787 None:intergenic 35.0%
AAGCGATGAATCAACTCTAA+GGG + chr3_3:53549768-53549787 Msa0458200:CDS 35.0%
TTTATGATGTGAAAGGCAAG+AGG - chr3_3:53549830-53549849 None:intergenic 35.0%
!!! TTTTTTGTCGAGCAAAACGT+GGG + chr3_3:53549908-53549927 Msa0458200:CDS 35.0%
AATGCAAGATCACAAGTCTA+AGG + chr3_3:53550107-53550126 Msa0458200:CDS 35.0%
ACGTCTTATGATATGAAGAC+GGG - chr3_3:53550233-53550252 None:intergenic 35.0%
CACGTCTTATGATATGAAGA+CGG - chr3_3:53550234-53550253 None:intergenic 35.0%
TCATATCATAAGACGTGTCT+TGG + chr3_3:53550237-53550256 Msa0458200:CDS 35.0%
! TATTCTTCTGCACCGATAAT+TGG + chr3_3:53550331-53550350 Msa0458200:intron 35.0%
TGTACCCAAAGCAAATTCAA+CGG + chr3_3:53550422-53550441 Msa0458200:CDS 35.0%
TATACTGTACTTACCATACC+TGG + chr3_3:53550542-53550561 Msa0458200:intron 35.0%
AATCAAAAGATGTCCAGGTA+TGG - chr3_3:53550558-53550577 None:intergenic 35.0%
!! TACTGGTATCTCTACTTTTC+AGG - chr3_3:53550668-53550687 None:intergenic 35.0%
AGTAGAGATACCAGTAAATC+CGG + chr3_3:53550672-53550691 Msa0458200:CDS 35.0%
GGCTAAACTCAATAAACAAG+GGG - chr3_3:53550756-53550775 None:intergenic 35.0%
!! ATGAGCATTGAGACTTGATT+TGG + chr3_3:53550833-53550852 Msa0458200:intron 35.0%
!! TGAGCATTGAGACTTGATTT+GGG + chr3_3:53550834-53550853 Msa0458200:intron 35.0%
ATCAAGTTCACAACTAGAGT+CGG - chr3_3:53551015-53551034 None:intergenic 35.0%
!! ACACCGTGAACATATTTTGA+TGG - chr3_3:53551190-53551209 None:intergenic 35.0%
! TTTACACAAAGGTTGTTTCC+AGG - chr3_3:53551318-53551337 None:intergenic 35.0%
CTGCATACAATACACCAAAA+TGG + chr3_3:53551351-53551370 Msa0458200:intron 35.0%
CATACAATACACCAAAATGG+TGG + chr3_3:53551354-53551373 Msa0458200:intron 35.0%
!! GAGCAAATTTTGTTTGTTCC+GGG + chr3_3:53551450-53551469 Msa0458200:intron 35.0%
! AGATATATCACAGTTCTGAC+AGG + chr3_3:53551659-53551678 Msa0458200:intron 35.0%
! GATATATCACAGTTCTGACA+GGG + chr3_3:53551660-53551679 Msa0458200:intron 35.0%
CTTAATCGAATGAATTTCCG+GGG + chr3_3:53551843-53551862 Msa0458200:CDS 35.0%
!! TTCATTTTTCTTAGGGTCCT+TGG + chr3_3:53552033-53552052 Msa0458200:intron 35.0%
TGGAATGTGTCGCATATTAA+TGG + chr3_3:53552110-53552129 Msa0458200:CDS 35.0%
TTGGAGAAGGTAAATGAACA+AGG + chr3_3:53552138-53552157 Msa0458200:intron 35.0%
ATGAGGGATCAAGACAAAAA+GGG - chr3_3:53552174-53552193 None:intergenic 35.0%
TATGAGGGATCAAGACAAAA+AGG - chr3_3:53552175-53552194 None:intergenic 35.0%
CTCAAAATTGCAATCACCAT+TGG - chr3_3:53552261-53552280 None:intergenic 35.0%
!! AGGAATTTGCTAATCAAACC+AGG - chr3_3:53552426-53552445 None:intergenic 35.0%
TAAAAACTTCTGGCACATGA+TGG - chr3_3:53552683-53552702 None:intergenic 35.0%
AGTTGTAAATGCAATCACCT+TGG - chr3_3:53552785-53552804 None:intergenic 35.0%
!!! AGATAGCATCTTGTTTTCGT+TGG - chr3_3:53552831-53552850 None:intergenic 35.0%
! TTTTGTCTATCTCTTCTGCT+TGG - chr3_3:53552900-53552919 None:intergenic 35.0%
GATAGACAAAAGAGAATCGT+TGG + chr3_3:53552909-53552928 Msa0458200:CDS 35.0%
ATCGTTGGATCAACAAATGA+TGG + chr3_3:53552924-53552943 Msa0458200:CDS 35.0%
! AATTGTGATAGTGACTGCAA+AGG + chr3_3:53553010-53553029 Msa0458200:intron 35.0%
ATAACAATACGACTGTACAG+GGG - chr3_3:53553101-53553120 None:intergenic 35.0%
CTGTGCTGTAAAAAGAATGT+GGG - chr3_3:53553384-53553403 None:intergenic 35.0%
TCTGTGCTGTAAAAAGAATG+TGG - chr3_3:53553385-53553404 None:intergenic 35.0%
TTCCTTCTTGTGATATGTGA+TGG + chr3_3:53553584-53553603 Msa0458200:intron 35.0%
AACCATCACATATCACAAGA+AGG - chr3_3:53553589-53553608 None:intergenic 35.0%
GAAGGCGATAATGATAATCT+TGG + chr3_3:53553748-53553767 Msa0458200:CDS 35.0%
GAGACAAGATGAAAATACCA+TGG - chr3_3:53553797-53553816 None:intergenic 35.0%
AATAACCGCTAATGCTATTG+TGG + chr3_3:53553893-53553912 Msa0458200:intron 35.0%
TTTCATTCTGGCAATGTTGT+TGG - chr3_3:53554085-53554104 None:intergenic 35.0%
!! ACTTTTGAGTGGTTTCATTC+TGG - chr3_3:53554097-53554116 None:intergenic 35.0%
!! ACTTTTGAGTGGTTTCATTC+TGG - chr3_3:53554097-53554116 None:intergenic 35.0%
!! AAAAGTGCTCTCTTGTAAAG+TGG + chr3_3:53554135-53554154 Msa0458200:CDS 35.0%
GAGAGAGTAGGTGTCAATAA+AGG + chr3_3:53547418-53547437 Msa0458200:five_prime_UTR 40.0%
GAGTGTGACGTTTGTTTACT+TGG + chr3_3:53547440-53547459 Msa0458200:five_prime_UTR 40.0%
AGGTCTCTTTCTTCTCTTCT+GGG - chr3_3:53547487-53547506 None:intergenic 40.0%
AAGGTCTCTTTCTTCTCTTC+TGG - chr3_3:53547488-53547507 None:intergenic 40.0%
! TGGGTCCCATTATTGATTGT+TGG + chr3_3:53548009-53548028 Msa0458200:intron 40.0%
!!! ACCTGGGGTTTTATTAGTGT+TGG + chr3_3:53548033-53548052 Msa0458200:intron 40.0%
ACCAACACTAATAAAACCCC+AGG - chr3_3:53548037-53548056 None:intergenic 40.0%
!!! TCAGGTGAAGAGTTTTGAAG+AGG + chr3_3:53548112-53548131 Msa0458200:intron 40.0%
!!! CAGGTGAAGAGTTTTGAAGA+GGG + chr3_3:53548113-53548132 Msa0458200:intron 40.0%
!!! AGGTGAAGAGTTTTGAAGAG+GGG + chr3_3:53548114-53548133 Msa0458200:intron 40.0%
!!! AGTTTTGAAGAGGGGTTTCT+GGG + chr3_3:53548122-53548141 Msa0458200:CDS 40.0%
TCACGTTCAATAACTATCCC+TGG - chr3_3:53548158-53548177 None:intergenic 40.0%
!! GTGTTTTGGATGGTGATATC+GGG + chr3_3:53548261-53548280 Msa0458200:CDS 40.0%
ATCGGGTCATTAAGTAAACG+TGG + chr3_3:53548278-53548297 Msa0458200:CDS 40.0%
TCGGGTCATTAAGTAAACGT+GGG + chr3_3:53548279-53548298 Msa0458200:CDS 40.0%
TAAGTAAACGTGGGAGGATT+AGG + chr3_3:53548288-53548307 Msa0458200:CDS 40.0%
TTCTCAAACTCAACCAAAGG+AGG - chr3_3:53548320-53548339 None:intergenic 40.0%
TAAATTACCAGGAAGCTTGG+TGG + chr3_3:53548372-53548391 Msa0458200:CDS 40.0%
AAATTACCAGGAAGCTTGGT+GGG + chr3_3:53548373-53548392 Msa0458200:CDS 40.0%
GTTGTGAATGATACGTGTGA+TGG + chr3_3:53548401-53548420 Msa0458200:CDS 40.0%
! GAATGATACGTGTGATGGAA+TGG + chr3_3:53548406-53548425 Msa0458200:CDS 40.0%
! ACCGTGTTTTTCCCTGATTT+GGG + chr3_3:53548437-53548456 Msa0458200:CDS 40.0%
ACCCAAATCAGGGAAAAACA+CGG - chr3_3:53548441-53548460 None:intergenic 40.0%
TTGGGTGATGAAATGAAGGT+CGG + chr3_3:53548455-53548474 Msa0458200:CDS 40.0%
TGAAATGAAGGTCGGAATTC+AGG + chr3_3:53548463-53548482 Msa0458200:CDS 40.0%
! AAATGCGGATTACTCAGGAT+TGG + chr3_3:53548486-53548505 Msa0458200:CDS 40.0%
! AATGCGGATTACTCAGGATT+GGG + chr3_3:53548487-53548506 Msa0458200:CDS 40.0%
TCAGGATTGGGATGAAGTTA+CGG + chr3_3:53548499-53548518 Msa0458200:CDS 40.0%
!! CGGTATCGATAAGGCAAATT+TGG + chr3_3:53548582-53548601 Msa0458200:CDS 40.0%
AATTTGCCGTGATTGGTGAA+TGG + chr3_3:53548627-53548646 Msa0458200:CDS 40.0%
CAATGTCCATTCACCAATCA+CGG - chr3_3:53548636-53548655 None:intergenic 40.0%
!! CACTTGATAATGGAGGTAGT+TGG + chr3_3:53548680-53548699 Msa0458200:CDS 40.0%
! TTCCATCTCTGGAAGTTTCA+AGG - chr3_3:53548744-53548763 None:intergenic 40.0%
AAACTTCCAGAGATGGAATC+AGG + chr3_3:53548746-53548765 Msa0458200:CDS 40.0%
AATTCACCTGATTCCATCTC+TGG - chr3_3:53548755-53548774 None:intergenic 40.0%
ATGGGAAATTGACATTGACC+TGG + chr3_3:53549078-53549097 Msa0458200:CDS 40.0%
TGGGAAATTGACATTGACCT+GGG + chr3_3:53549079-53549098 Msa0458200:CDS 40.0%
! CCTATTGCAATGGATTCCAT+TGG - chr3_3:53549131-53549150 None:intergenic 40.0%
CCAATGGAATCCATTGCAAT+AGG + chr3_3:53549128-53549147 Msa0458200:CDS 40.0%
! ATACCAAGACCATTTTCGGA+CGG - chr3_3:53549211-53549230 None:intergenic 40.0%
! CCGAAAATGGTCTTGGTATA+AGG + chr3_3:53549212-53549231 Msa0458200:CDS 40.0%
!! ATCTGTTCAGATGGACTAAG+AGG - chr3_3:53549271-53549290 None:intergenic 40.0%
TTATTGTCCTCAAGCCATTG+TGG + chr3_3:53549354-53549373 Msa0458200:CDS 40.0%
TCTTCTTGAGTGCATGTTTG+TGG - chr3_3:53549384-53549403 None:intergenic 40.0%
ATCATCTGAAAGCAGAAGGA+TGG + chr3_3:53549449-53549468 Msa0458200:CDS 40.0%
! GAGAAGAATCTCTGTTTCTC+TGG - chr3_3:53549529-53549548 None:intergenic 40.0%
AAATACCTCGACCATTCATG+AGG + chr3_3:53549621-53549640 Msa0458200:CDS 40.0%
! ATTTTCCTCATGAATGGTCG+AGG - chr3_3:53549629-53549648 None:intergenic 40.0%
AAACGCTTGAGGAATTCAGA+TGG + chr3_3:53549727-53549746 Msa0458200:CDS 40.0%
GAAGCGATGAATCAACTCTA+AGG + chr3_3:53549767-53549786 Msa0458200:CDS 40.0%
AGCGATGAATCAACTCTAAG+GGG + chr3_3:53549769-53549788 Msa0458200:CDS 40.0%
GGGACTGAGATCAAATGAAA+GGG + chr3_3:53549789-53549808 Msa0458200:CDS 40.0%
!! ATCAAATGAAAGGGTGCCAA+AGG + chr3_3:53549798-53549817 Msa0458200:CDS 40.0%
ACAGCAACATGTTGTTACCA+AGG + chr3_3:53549878-53549897 Msa0458200:CDS 40.0%
CATGTTGTTACCAAGGTCTA+AGG + chr3_3:53549885-53549904 Msa0458200:CDS 40.0%
CGACAAAAAACCTTAGACCT+TGG - chr3_3:53549898-53549917 None:intergenic 40.0%
!!! GTTTTTTGTCGAGCAAAACG+TGG + chr3_3:53549907-53549926 Msa0458200:CDS 40.0%
TCCTTCGAATTTCATGCTAC+TGG + chr3_3:53550009-53550028 Msa0458200:CDS 40.0%
ACCAAGTGCCAATATCTTTC+TGG + chr3_3:53550047-53550066 Msa0458200:CDS 40.0%
AGATAAGAGCGATCTACCAT+CGG - chr3_3:53550073-53550092 None:intergenic 40.0%
GACAAAACCATTCACCATCA+GGG - chr3_3:53550382-53550401 None:intergenic 40.0%
GTACCCAAAGCAAATTCAAC+GGG + chr3_3:53550423-53550442 Msa0458200:CDS 40.0%
TACCCAAAGCAAATTCAACG+GGG + chr3_3:53550424-53550443 Msa0458200:CDS 40.0%
GTTCACACTGAATGCATGTA+AGG - chr3_3:53550469-53550488 None:intergenic 40.0%
CACGCAACATGATCTACATT+AGG - chr3_3:53550645-53550664 None:intergenic 40.0%
CACATAACTTCCGGATTTAC+TGG - chr3_3:53550685-53550704 None:intergenic 40.0%
CAGTAAATCCGGAAGTTATG+TGG + chr3_3:53550683-53550702 Msa0458200:CDS 40.0%
CTGTCCTAACAGACTTTGAA+GGG - chr3_3:53550943-53550962 None:intergenic 40.0%
TGAATGTTTCAAGCCCCTAA+AGG + chr3_3:53551100-53551119 Msa0458200:CDS 40.0%
CAAGAAGAGGATTCCTTTAG+GGG - chr3_3:53551116-53551135 None:intergenic 40.0%
GCAAGAAGAGGATTCCTTTA+GGG - chr3_3:53551117-53551136 None:intergenic 40.0%
TGCAAGAAGAGGATTCCTTT+AGG - chr3_3:53551118-53551137 None:intergenic 40.0%
CATCAAATCTCTGCAAGAAG+AGG - chr3_3:53551129-53551148 None:intergenic 40.0%
CTCTTCTTGCAGAGATTTGA+TGG + chr3_3:53551127-53551146 Msa0458200:CDS 40.0%
TTGTTGTCACGTGACTTGAA+AGG + chr3_3:53551278-53551297 Msa0458200:intron 40.0%
TAACAGAAAAAAGGGTAGCC+CGG - chr3_3:53551421-53551440 None:intergenic 40.0%
GGTTATGAACTATGATCAGC+AGG - chr3_3:53551533-53551552 None:intergenic 40.0%
! ATCGACAGATGTGGAAGTTT+TGG + chr3_3:53551700-53551719 Msa0458200:intron 40.0%
! TCGACAGATGTGGAAGTTTT+GGG + chr3_3:53551701-53551720 Msa0458200:intron 40.0%
GAAGTACAGAATAGAAACCC+CGG - chr3_3:53551863-53551882 None:intergenic 40.0%
GGGTTTCTATTCTGTACTTC+TGG + chr3_3:53551863-53551882 Msa0458200:CDS 40.0%
TCTGGAGAGAAATGAAGATC+TGG + chr3_3:53551881-53551900 Msa0458200:CDS 40.0%
TGGTCAGTGTAGCAACTATT+AGG + chr3_3:53551901-53551920 Msa0458200:CDS 40.0%
TGAAATCTGGTACCAACAAG+GGG - chr3_3:53552078-53552097 None:intergenic 40.0%
CTGAAATCTGGTACCAACAA+GGG - chr3_3:53552079-53552098 None:intergenic 40.0%
! CTTTGAAAATCCAAAAGCGC+CGG - chr3_3:53552602-53552621 None:intergenic 40.0%
TAAATGCAATCACCTTGGCA+AGG - chr3_3:53552780-53552799 None:intergenic 40.0%
CGAAAACAAGATGCTATCTC+CGG + chr3_3:53552832-53552851 Msa0458200:CDS 40.0%
ATTACTAGCACTACTGCTTC+CGG - chr3_3:53552854-53552873 None:intergenic 40.0%
GCTTGGTAAACTTCAGAAAC+TGG - chr3_3:53552883-53552902 None:intergenic 40.0%
GCAAAGGCGATCTAATATTG+TGG + chr3_3:53553026-53553045 Msa0458200:intron 40.0%
CTAATATTGTGGCCCTGAAA+AGG + chr3_3:53553037-53553056 Msa0458200:intron 40.0%
! TCAAGCGACTTTCCTTTTCA+GGG - chr3_3:53553052-53553071 None:intergenic 40.0%
!! TACAGGGGGGTTCATTTTTA+CGG - chr3_3:53553086-53553105 None:intergenic 40.0%
TAACAATACGACTGTACAGG+GGG - chr3_3:53553100-53553119 None:intergenic 40.0%
GTAAAAAGAATGTGGGATGC+TGG - chr3_3:53553377-53553396 None:intergenic 40.0%
CACTGTGTAGTATAACACGA+TGG - chr3_3:53553819-53553838 None:intergenic 40.0%
TGTTGTTGGTCCACATGAAT+TGG - chr3_3:53554071-53554090 None:intergenic 40.0%
! TTCATTCTGGCACTTTTGAG+TGG - chr3_3:53554108-53554127 None:intergenic 40.0%
!!! TACAAGAGAGCACTTTTGAG+TGG - chr3_3:53554132-53554151 None:intergenic 40.0%
GAAGCTCCAAACCCTATCAA+TGG + chr3_3:53547640-53547659 Msa0458200:exon 45.0%
CAAACCCTATCAATGGAGGA+GGG + chr3_3:53547647-53547666 Msa0458200:exon 45.0%
GAAACCCTCCTCCATTGATA+GGG - chr3_3:53547654-53547673 None:intergenic 45.0%
TATCAGGACCCATTAATCCG+TGG + chr3_3:53547969-53547988 Msa0458200:intron 45.0%
ATCAGGACCCATTAATCCGT+GGG + chr3_3:53547970-53547989 Msa0458200:intron 45.0%
!!! GAGTTTTGAAGAGGGGTTTC+TGG + chr3_3:53548121-53548140 Msa0458200:CDS 45.0%
!! TGGGTTGGGTAATTTTGTGG+AGG + chr3_3:53548223-53548242 Msa0458200:CDS 45.0%
GGTCATTAAGTAAACGTGGG+AGG + chr3_3:53548282-53548301 Msa0458200:CDS 45.0%
! TGATACGTGTGATGGAATGG+AGG + chr3_3:53548409-53548428 Msa0458200:CDS 45.0%
! GACCGTGTTTTTCCCTGATT+TGG + chr3_3:53548436-53548455 Msa0458200:CDS 45.0%
AGGTCGGAATTCAGGAAATG+CGG + chr3_3:53548471-53548490 Msa0458200:CDS 45.0%
! TCAGGAAATGCGGATTACTC+AGG + chr3_3:53548481-53548500 Msa0458200:CDS 45.0%
GGATGAAGTTACGGAGAAGT+GGG + chr3_3:53548508-53548527 Msa0458200:CDS 45.0%
AAAAGCAACCATTTCCCTCG+TGG - chr3_3:53548536-53548555 None:intergenic 45.0%
GATTGAGGAGTCGTATCTTC+CGG + chr3_3:53548562-53548581 Msa0458200:CDS 45.0%
!! CGTATCTTCCGGTATCGATA+AGG + chr3_3:53548573-53548592 Msa0458200:CDS 45.0%
!! GTGGAGACACTTGATAATGG+AGG + chr3_3:53548673-53548692 Msa0458200:CDS 45.0%
TGGTGACTACTTGGCTGTTA+CGG + chr3_3:53548700-53548719 Msa0458200:CDS 45.0%
CTACTTGGCTGTTACGGTAA+AGG + chr3_3:53548706-53548725 Msa0458200:CDS 45.0%
! TTTTCAGCTGGAGGAACAAC+AGG - chr3_3:53548812-53548831 None:intergenic 45.0%
TGTTGTTCCTCCAGCTGAAA+AGG + chr3_3:53548811-53548830 Msa0458200:CDS 45.0%
! TTAGGCAAGTCCTTTTCAGC+TGG - chr3_3:53548824-53548843 None:intergenic 45.0%
TTCTGACTCCAAGGCAACTA+TGG + chr3_3:53549012-53549031 Msa0458200:CDS 45.0%
CAAAGATGCCATAGTTGCCT+TGG - chr3_3:53549023-53549042 None:intergenic 45.0%
GGCAACTATGGCATCTTTGA+AGG + chr3_3:53549024-53549043 Msa0458200:CDS 45.0%
! TTGCAATGGATTCCATTGGG+TGG - chr3_3:53549127-53549146 None:intergenic 45.0%
AACTCTTCTCCGTCCGAAAA+TGG + chr3_3:53549199-53549218 Msa0458200:CDS 45.0%
! ATTTGGAACCTGACAGTCAC+CGG - chr3_3:53549245-53549264 None:intergenic 45.0%
!! GATGGACTAAGAGGCAGATT+TGG - chr3_3:53549262-53549281 None:intergenic 45.0%
!! CGGTTCTGAATCTGTTCAGA+TGG - chr3_3:53549280-53549299 None:intergenic 45.0%
CCACAACTAGAGGAGATACT+CGG - chr3_3:53549300-53549319 None:intergenic 45.0%
CGAGTATCTCCTCTAGTTGT+GGG + chr3_3:53549298-53549317 Msa0458200:CDS 45.0%
GAGTATCTCCTCTAGTTGTG+GGG + chr3_3:53549299-53549318 Msa0458200:CDS 45.0%
TGGTATTCCACAATGGCTTG+AGG - chr3_3:53549364-53549383 None:intergenic 45.0%
CACTCAAGAAGACCTGCAAT+CGG + chr3_3:53549392-53549411 Msa0458200:CDS 45.0%
ACTCAAGAAGACCTGCAATC+GGG + chr3_3:53549393-53549412 Msa0458200:CDS 45.0%
GGGGACTGAGATCAAATGAA+AGG + chr3_3:53549788-53549807 Msa0458200:CDS 45.0%
TCTGGGCGAATAACTCATGA+AGG + chr3_3:53549946-53549965 Msa0458200:CDS 45.0%
GCCAGTAGCATGAAATTCGA+AGG - chr3_3:53550013-53550032 None:intergenic 45.0%
GATATTGGCACTTGGTCTGA+TGG - chr3_3:53550043-53550062 None:intergenic 45.0%
GCCAGAAAGATATTGGCACT+TGG - chr3_3:53550051-53550070 None:intergenic 45.0%
ACCATCGGCCAGAAAGATAT+TGG - chr3_3:53550058-53550077 None:intergenic 45.0%
GCAAGATCACAAGTCTAAGG+AGG + chr3_3:53550110-53550129 Msa0458200:CDS 45.0%
! ATTTGTTCCGTTTGCCGCTT+TGG + chr3_3:53550180-53550199 Msa0458200:CDS 45.0%
AAAGAAGTTCGCCTCCAAAG+CGG - chr3_3:53550197-53550216 None:intergenic 45.0%
TCATAAGACGTGTCTTGGTC+TGG + chr3_3:53550242-53550261 Msa0458200:CDS 45.0%
CATGTATAGGATCTCCCTGA+TGG + chr3_3:53550365-53550384 Msa0458200:intron 45.0%
GGACAAAACCATTCACCATC+AGG - chr3_3:53550383-53550402 None:intergenic 45.0%
!! TTTTGTCCATCGTGTCGATG+CGG + chr3_3:53550395-53550414 Msa0458200:CDS 45.0%
ACCCAAAGCAAATTCAACGG+GGG + chr3_3:53550425-53550444 Msa0458200:CDS 45.0%
! ACCCCCGTTGAATTTGCTTT+GGG - chr3_3:53550429-53550448 None:intergenic 45.0%
CTGCGGAAAAGACTGTGAAA+AGG + chr3_3:53550716-53550735 Msa0458200:CDS 45.0%
GCTGTCCTAACAGACTTTGA+AGG - chr3_3:53550944-53550963 None:intergenic 45.0%
TTAGGACAGCCAGTTTCAGT+GGG + chr3_3:53550954-53550973 Msa0458200:CDS 45.0%
GTTCATAATAAGGGGAGCCT+TGG + chr3_3:53551242-53551261 Msa0458200:intron 45.0%
TCACGTGACTTGAAAGGTCA+TGG + chr3_3:53551284-53551303 Msa0458200:intron 45.0%
CACGTGACTTGAAAGGTCAT+GGG + chr3_3:53551285-53551304 Msa0458200:intron 45.0%
CTAAAGTTCCCGCATACACA+GGG - chr3_3:53551394-53551413 None:intergenic 45.0%
TAACAGAAAAAAGGGCAGCC+CGG - chr3_3:53551471-53551490 None:intergenic 45.0%
ATCAAGACGGCCATTACAGA+AGG - chr3_3:53552006-53552025 None:intergenic 45.0%
TCTTAGGGTCCTTGGAGATA+AGG + chr3_3:53552041-53552060 Msa0458200:intron 45.0%
CTTCAGCTACCTTATCTCCA+AGG - chr3_3:53552053-53552072 None:intergenic 45.0%
GCTGAAATCTGGTACCAACA+AGG - chr3_3:53552080-53552099 None:intergenic 45.0%
ATGACGACGATGCTGAAATC+TGG - chr3_3:53552091-53552110 None:intergenic 45.0%
AGATTTCAGCATCGTCGTCA+TGG + chr3_3:53552090-53552109 Msa0458200:CDS 45.0%
CATCAGAAGCTCACGCAATT+AGG + chr3_3:53552526-53552545 Msa0458200:intron 45.0%
TTCCCACTGTGGTAGATACA+TGG + chr3_3:53552575-53552594 Msa0458200:CDS 45.0%
GTCCATGTATCTACCACAGT+GGG - chr3_3:53552580-53552599 None:intergenic 45.0%
ACTGTGGTAGATACATGGAC+CGG + chr3_3:53552580-53552599 Msa0458200:CDS 45.0%
TGATGGTACCCGGAAAATCT+AGG - chr3_3:53552666-53552685 None:intergenic 45.0%
GGCAAAACCGAATTTGGAGA+GGG - chr3_3:53552715-53552734 None:intergenic 45.0%
TGGCAAAACCGAATTTGGAG+AGG - chr3_3:53552716-53552735 None:intergenic 45.0%
CCAGTTGGCAAAACCGAATT+TGG - chr3_3:53552721-53552740 None:intergenic 45.0%
! CCAAATTCGGTTTTGCCAAC+TGG + chr3_3:53552718-53552737 Msa0458200:CDS 45.0%
GGTACACACTTGTCTCCAAT+AGG - chr3_3:53552759-53552778 None:intergenic 45.0%
! CTCAAGCGACTTTCCTTTTC+AGG - chr3_3:53553053-53553072 None:intergenic 45.0%
AACAATACGACTGTACAGGG+GGG - chr3_3:53553099-53553118 None:intergenic 45.0%
! TGTTATCGACTGTGTCACCA+TGG + chr3_3:53553777-53553796 Msa0458200:CDS 45.0%
TAGCGCCACAATAGCATTAG+CGG - chr3_3:53553901-53553920 None:intergenic 45.0%
GTGTCAGTGTTGTCAATGTC+AGG - chr3_3:53553952-53553971 None:intergenic 45.0%
TGCTCTCTTGTAAAGTGGAG+TGG + chr3_3:53554140-53554159 Msa0458200:CDS 45.0%
TCTTGTAAAGTGGAGTGGAC+TGG + chr3_3:53554145-53554164 Msa0458200:CDS 45.0%
GCTCCAAACCCTATCAATGG+AGG + chr3_3:53547643-53547662 Msa0458200:exon 50.0%
CCTCCTCCATTGATAGGGTT+TGG - chr3_3:53547649-53547668 None:intergenic 50.0%
CCAAACCCTATCAATGGAGG+AGG + chr3_3:53547646-53547665 Msa0458200:exon 50.0%
CGAAACCCTCCTCCATTGAT+AGG - chr3_3:53547655-53547674 None:intergenic 50.0%
! AGTGGGTCCCACGGATTAAT+GGG - chr3_3:53547980-53547999 None:intergenic 50.0%
! AAGTGGGTCCCACGGATTAA+TGG - chr3_3:53547981-53548000 None:intergenic 50.0%
!! AAGAGGGGTTTCTGGGATCA+TGG + chr3_3:53548129-53548148 Msa0458200:CDS 50.0%
!! TTTCTGGGATCATGGCATCC+AGG + chr3_3:53548137-53548156 Msa0458200:CDS 50.0%
!! TTCTGGGATCATGGCATCCA+GGG + chr3_3:53548138-53548157 Msa0458200:CDS 50.0%
! AACTCAACCAAAGGAGGCAC+TGG - chr3_3:53548314-53548333 None:intergenic 50.0%
GGGATGAAGTTACGGAGAAG+TGG + chr3_3:53548507-53548526 Msa0458200:CDS 50.0%
!! GGAGGTAGTTGGTGACTACT+TGG + chr3_3:53548691-53548710 Msa0458200:CDS 50.0%
GGCCTTGAAACTTCCAGAGA+TGG + chr3_3:53548739-53548758 Msa0458200:CDS 50.0%
GAAGTTTCATGCAACGGTGC+TGG + chr3_3:53548854-53548873 Msa0458200:CDS 50.0%
TGTGCTTGCTTCTGACTCCA+AGG + chr3_3:53549003-53549022 Msa0458200:CDS 50.0%
TACAGGTACAAGCCACCCAA+TGG + chr3_3:53549112-53549131 Msa0458200:CDS 50.0%
TCTCCGTCCGAAAATGGTCT+TGG + chr3_3:53549205-53549224 Msa0458200:CDS 50.0%
! CTTGGTATAAGGCATCCTGC+CGG + chr3_3:53549223-53549242 Msa0458200:CDS 50.0%
CCGAGTATCTCCTCTAGTTG+TGG + chr3_3:53549297-53549316 Msa0458200:CDS 50.0%
TCATCTGCCACTGCAACAGA+TGG - chr3_3:53549328-53549347 None:intergenic 50.0%
! CCTTTTATCTGCCCGATTGC+AGG - chr3_3:53549407-53549426 None:intergenic 50.0%
CCTGCAATCGGGCAGATAAA+AGG + chr3_3:53549404-53549423 Msa0458200:CDS 50.0%
ATCGGAAGCGAAAACGCTTG+AGG + chr3_3:53549716-53549735 Msa0458200:CDS 50.0%
! TTCGCCCAGAAAGCACAGTA+CGG - chr3_3:53549936-53549955 None:intergenic 50.0%
! GCCAATATCTTTCTGGCCGA+TGG + chr3_3:53550054-53550073 Msa0458200:CDS 50.0%
TAAGACGTGTCTTGGTCTGG+AGG + chr3_3:53550245-53550264 Msa0458200:CDS 50.0%
! AGGATCTCCCTGATGGTGAA+TGG + chr3_3:53550372-53550391 Msa0458200:intron 50.0%
! TTTGTCCATCGTGTCGATGC+GGG + chr3_3:53550396-53550415 Msa0458200:CDS 50.0%
! CACCCCCGTTGAATTTGCTT+TGG - chr3_3:53550430-53550449 None:intergenic 50.0%
CAAAGCAAATTCAACGGGGG+TGG + chr3_3:53550428-53550447 Msa0458200:CDS 50.0%
CCGGCTTTCCACATAACTTC+CGG - chr3_3:53550694-53550713 None:intergenic 50.0%
CCGGAAGTTATGTGGAAAGC+CGG + chr3_3:53550691-53550710 Msa0458200:CDS 50.0%
! TATGTGGAAAGCCGGTTCTG+CGG + chr3_3:53550699-53550718 Msa0458200:CDS 50.0%
! CACAGTCTTTTCCGCAGAAC+CGG - chr3_3:53550713-53550732 None:intergenic 50.0%
GCAGCCCTTCAAAGTCTGTT+AGG + chr3_3:53550936-53550955 Msa0458200:CDS 50.0%
GTTAGGACAGCCAGTTTCAG+TGG + chr3_3:53550953-53550972 Msa0458200:CDS 50.0%
TGGGTGCGGACAATCTAACA+TGG + chr3_3:53550973-53550992 Msa0458200:CDS 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr3_3:53551262-53551281 None:intergenic 50.0%
AAGGTCATGGGTTCAAGTCC+TGG + chr3_3:53551297-53551316 Msa0458200:intron 50.0%
! AGGAAGAGGTCCCACCATTT+TGG - chr3_3:53551368-53551387 None:intergenic 50.0%
! AAAATGGTGGGACCTCTTCC+TGG + chr3_3:53551367-53551386 Msa0458200:intron 50.0%
GCTAAAGTTCCCGCATACAC+AGG - chr3_3:53551395-53551414 None:intergenic 50.0%
! GTAGCTGAAGTACCCCTTGT+TGG + chr3_3:53552063-53552082 Msa0458200:CDS 50.0%
GAAGCTCACGCAATTAGGAG+TGG + chr3_3:53552531-53552550 Msa0458200:intron 50.0%
TTTACCTGCTGTTCCCACTG+TGG + chr3_3:53552564-53552583 Msa0458200:CDS 50.0%
GGTCCATGTATCTACCACAG+TGG - chr3_3:53552581-53552600 None:intergenic 50.0%
TTCTGGCACATGATGGTACC+CGG - chr3_3:53552676-53552695 None:intergenic 50.0%
GACAAGTGTGTACCTTGCCA+AGG + chr3_3:53552765-53552784 Msa0458200:intron 50.0%
! AATGTGGGATGCTGGTGTTG+TGG - chr3_3:53553369-53553388 None:intergenic 50.0%
GACTGGTGTACTCTAGACGA+AGG + chr3_3:53554162-53554181 Msa0458200:CDS 50.0%
GGTGTACTCTAGACGAAGGA+AGG + chr3_3:53554166-53554185 Msa0458200:CDS 50.0%
TCTAGACGAAGGAAGGCGAA+AGG + chr3_3:53554173-53554192 Msa0458200:CDS 50.0%
CTAGACGAAGGAAGGCGAAA+GGG + chr3_3:53554174-53554193 Msa0458200:CDS 50.0%
TAGACGAAGGAAGGCGAAAG+GGG + chr3_3:53554175-53554194 Msa0458200:CDS 50.0%
GAAAGGGGAACATGAAGCGT+AGG + chr3_3:53554190-53554209 Msa0458200:CDS 50.0%
CCAAGAGAAAGTGGGTCCCA+CGG - chr3_3:53547989-53548008 None:intergenic 55.0%
TGGGACCCACTTTCTCTTGG+TGG + chr3_3:53547989-53548008 Msa0458200:intron 55.0%
GGGACCCACTTTCTCTTGGT+GGG + chr3_3:53547990-53548009 Msa0458200:intron 55.0%
GGGACCCACCAAGAGAAAGT+GGG - chr3_3:53547997-53548016 None:intergenic 55.0%
TGGGACCCACCAAGAGAAAG+TGG - chr3_3:53547998-53548017 None:intergenic 55.0%
GATTAGGCCAGTGCCTCCTT+TGG + chr3_3:53548304-53548323 Msa0458200:CDS 55.0%
! TACCAGGAAGCTTGGTGGGA+AGG + chr3_3:53548377-53548396 Msa0458200:CDS 55.0%
! CGTGTGATGGAATGGAGGAG+AGG + chr3_3:53548414-53548433 Msa0458200:CDS 55.0%
! GGCAAGTCCTTTTCAGCTGG+AGG - chr3_3:53548821-53548840 None:intergenic 55.0%
!! ATGCAACGGTGCTGGTCAAG+TGG + chr3_3:53548862-53548881 Msa0458200:CDS 55.0%
GGACGGAGAAGAGTTCAGCA+TGG - chr3_3:53549194-53549213 None:intergenic 55.0%
GATGGAAGCCCCACAACTAG+AGG - chr3_3:53549310-53549329 None:intergenic 55.0%
GATTCATCGCTTCGGCGCTT+TGG - chr3_3:53549760-53549779 None:intergenic 55.0%
AGGCAAGAGGAAGACGCCTT+TGG - chr3_3:53549817-53549836 None:intergenic 55.0%
GGCACCGTACTGTGCTTTCT+GGG + chr3_3:53549929-53549948 Msa0458200:CDS 55.0%
CCTTGACGCAAACGACTGTG+TGG - chr3_3:53550147-53550166 None:intergenic 55.0%
CCACACAGTCGTTTGCGTCA+AGG + chr3_3:53550144-53550163 Msa0458200:CDS 55.0%
!! TGTTCCGTTTGCCGCTTTGG+AGG + chr3_3:53550183-53550202 Msa0458200:CDS 55.0%
TTCGCCTCCAAAGCGGCAAA+CGG - chr3_3:53550190-53550209 None:intergenic 55.0%
ACGTGTCTTGGTCTGGAGGT+AGG + chr3_3:53550249-53550268 Msa0458200:intron 55.0%
! CAAATCCCGCATCGACACGA+TGG - chr3_3:53550404-53550423 None:intergenic 55.0%
CAAATTCAACGGGGGTGGTG+AGG + chr3_3:53550433-53550452 Msa0458200:CDS 55.0%
ACAGCCAGTTTCAGTGGGTG+CGG + chr3_3:53550959-53550978 Msa0458200:CDS 55.0%
TTGTCCGCACCCACTGAAAC+TGG - chr3_3:53550966-53550985 None:intergenic 55.0%
CATACACAGGGTCCAGGAAG+AGG - chr3_3:53551382-53551401 None:intergenic 55.0%
CTTCCTGGACCCTGTGTATG+CGG + chr3_3:53551382-53551401 Msa0458200:intron 55.0%
TTCCTGGACCCTGTGTATGC+GGG + chr3_3:53551383-53551402 Msa0458200:intron 55.0%
TCTACCACAGTGGGAACAGC+AGG - chr3_3:53552571-53552590 None:intergenic 55.0%
! GATACATGGACCGGCGCTTT+TGG + chr3_3:53552589-53552608 Msa0458200:CDS 55.0%
GGCGGAGCAACCAATTCATG+TGG + chr3_3:53554058-53554077 Msa0458200:intron 55.0%
CCGTGGGACCCACTTTCTCT+TGG + chr3_3:53547986-53548005 Msa0458200:intron 60.0%
CACCTTCCCACCAAGCTTCC+TGG - chr3_3:53548382-53548401 None:intergenic 60.0%
AGTGGGAGCCACGAGGGAAA+TGG + chr3_3:53548525-53548544 Msa0458200:CDS 60.0%
GGGGCTTCCATCTGTTGCAG+TGG + chr3_3:53549318-53549337 Msa0458200:CDS 60.0%
! GGGCACCGTACTGTGCTTTC+TGG + chr3_3:53549928-53549947 Msa0458200:CDS 60.0%
TAAGGGGAGCCTTGGCGCAA+CGG + chr3_3:53551250-53551269 Msa0458200:intron 60.0%
TTCCCGCATACACAGGGTCC+AGG - chr3_3:53551388-53551407 None:intergenic 60.0%
ACGGAGAAGTGGGAGCCACG+AGG + chr3_3:53548518-53548537 Msa0458200:CDS 65.0%
CGGAGAAGTGGGAGCCACGA+GGG + chr3_3:53548519-53548538 Msa0458200:CDS 65.0%
GCATCCTGCCGGTGACTGTC+AGG + chr3_3:53549234-53549253 Msa0458200:CDS 65.0%
GGAACCTGACAGTCACCGGC+AGG - chr3_3:53549241-53549260 None:intergenic 65.0%
CATCGCTTCGGCGCTTTGGC+AGG - chr3_3:53549756-53549775 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 53547418 53554249 53547418 ID=Msa0458200;Name=Msa0458200
chr3_3 mRNA 53547418 53554249 53547418 ID=Msa0458200-mRNA-1;Parent=Msa0458200;Name=Msa0458200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=241|1|0.90|1|0.9|1|11|38|1131
chr3_3 exon 53547418 53547724 53547418 ID=Msa0458200-mRNA-1:exon:10474;Parent=Msa0458200-mRNA-1
chr3_3 exon 53548116 53550266 53548116 ID=Msa0458200-mRNA-1:exon:10475;Parent=Msa0458200-mRNA-1
chr3_3 exon 53550374 53550494 53550374 ID=Msa0458200-mRNA-1:exon:10476;Parent=Msa0458200-mRNA-1
chr3_3 exon 53550652 53550737 53550652 ID=Msa0458200-mRNA-1:exon:10477;Parent=Msa0458200-mRNA-1
chr3_3 exon 53550930 53551171 53550930 ID=Msa0458200-mRNA-1:exon:10478;Parent=Msa0458200-mRNA-1
chr3_3 exon 53551836 53551922 53551836 ID=Msa0458200-mRNA-1:exon:10479;Parent=Msa0458200-mRNA-1
chr3_3 exon 53552047 53552146 53552047 ID=Msa0458200-mRNA-1:exon:10480;Parent=Msa0458200-mRNA-1
chr3_3 exon 53552532 53552739 53552532 ID=Msa0458200-mRNA-1:exon:10481;Parent=Msa0458200-mRNA-1
chr3_3 exon 53552824 53552947 53552824 ID=Msa0458200-mRNA-1:exon:10482;Parent=Msa0458200-mRNA-1
chr3_3 exon 53553741 53553798 53553741 ID=Msa0458200-mRNA-1:exon:10483;Parent=Msa0458200-mRNA-1
chr3_3 exon 53554059 53554249 53554059 ID=Msa0458200-mRNA-1:exon:10484;Parent=Msa0458200-mRNA-1
chr3_3 five_prime_UTR 53547418 53547658 53547418 ID=Msa0458200-mRNA-1:five_prime_utr;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53547659 53547724 53547659 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53548116 53550266 53548116 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53550374 53550494 53550374 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53550652 53550737 53550652 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53550930 53551171 53550930 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53551836 53551922 53551836 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53552047 53552146 53552047 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53552532 53552739 53552532 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53552824 53552947 53552824 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53553741 53553798 53553741 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 CDS 53554059 53554211 53554059 ID=Msa0458200-mRNA-1:cds;Parent=Msa0458200-mRNA-1
chr3_3 three_prime_UTR 53554212 53554249 53554212 ID=Msa0458200-mRNA-1:three_prime_utr;Parent=Msa0458200-mRNA-1
Gene Sequence

>Msa0458200

ATGGAGGAGGGTTTCGCGACTTCAAAAAACTCGCAATCAAAGCTGAAAATCAATGAAAGGGTTGAGGTGAAGAGTTTTGAAGAGGGGTTTCTGGGATCATGGCATCCAGGGATAGTTATTGAACGTGAGAAGCTGAAGCGTCATGTTCGATATGAGAATATTCTGAATGATAATGGGTTGGGTAATTTTGTGGAGGTAGTGAGTGTTTCAAGTGTTTTGGATGGTGATATCGGGTCATTAAGTAAACGTGGGAGGATTAGGCCAGTGCCTCCTTTGGTTGAGTTTGAGAAATGTGATCTTAAGTATGGTTTGTGTGTAGATGTAAATTACCAGGAAGCTTGGTGGGAAGGTGTTGTGAATGATACGTGTGATGGAATGGAGGAGAGGACCGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGGAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGAGAAGTGGGAGCCACGAGGGAAATGGTTGCTTTTTGAATTGATTGAGGAGTCGTATCTTCCGGTATCGATAAGGCAAATTTGGTATGATGTGCGACAAAAAAAGGAATTTGCCGTGATTGGTGAATGGACATTGAATGAGAAGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGACTACTTGGCTGTTACGGTAAAGGAAGTTTTCTCGGCCTTGAAACTTCCAGAGATGGAATCAGGTGAATTATTATCTGAAAAGGAAAAGTTTGAGCAGAAAGAACCTGTTGTTCCTCCAGCTGAAAAGGACTTGCCTAAGTTTCAAAATGAAGTTTCATGCAACGGTGCTGGTCAAGTGGTTGCCATCAATTTTGAGAAAAATGAACACAGGTTGTCAACTGATTTAAAGTCAAATTGTTCGTGGGAACGTGTAATATTTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTCTGACTCCAAGGCAACTATGGCATCTTTGAAGGAAAAAGTATGGAAACATCTTGCATATCTTGGATGGGAAATTGACATTGACCTGGGTAGTAAAAAATACAGGTACAAGCCACCCAATGGAATCCATTGCAATAGGAAACTTTACTACTCACTTATTGAACTTTGTAAAGCTGAATCCATGCTGAACTCTTCTCCGTCCGAAAATGGTCTTGGTATAAGGCATCCTGCCGGTGACTGTCAGGTTCCAAATCTGCCTCTTAGTCCATCTGAACAGATTCAGAACCGAGTATCTCCTCTAGTTGTGGGGCTTCCATCTGTTGCAGTGGCAGATGAACAATCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCACTCAAGAAGACCTGCAATCGGGCAGATAAAAGGAAACTTATTTCAAAAGTAAGAAATCATCTGAAAGCAGAAGGATGGATTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCAGAGAAACAGAGATTCTTCTCATTGAATTCCGTATGCAGTTTCATATTTAAAGAAAGTATTCAGAAATCGACTATTTCTGGCATGCAGCCTTTAAATACCTCGACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTAACAAGTGGAGACAGTGTTGCTGCGAATAAATCAACTGCAAATCGGAAGCGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCGATGAATCAACTCTAAGGGGACTGAGATCAAATGAAAGGGTGCCAAAGGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGAATAACTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAATATCTTTCTGGCCGATGGTAGATCGCTCTTATCTTGCCAGATACAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCGTTTGCGTCAAGGTGAAAACGACTACATTTGTTCCGTTTGCCGCTTTGGAGGCGAACTTCTTTTGTGTGATCAATGCCCGTCTTCATATCATAAGACGTGTCTTGGTCTGGAGGATCTCCCTGATGGTGAATGGTTTTGTCCATCGTGTCGATGCGGGATTTGTACCCAAAGCAAATTCAACGGGGGTGGTGAGGATGAACATTTCCTTACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTGAAAAGTAGAGATACCAGTAAATCCGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATATGCAGCCCTTCAAAGTCTGTTAGGACAGCCAGTTTCAGTGGGTGCGGACAATCTAACATGGACATTAGTGAAGTGTGCCGACTCTAGTTGTGAACTTGATAATAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCATTGATGCATGAATGTTTCAAGCCCCTAAAGGAATCCTCTTCTTGCAGAGATTTGATGGAAAATGTTTTATTCAGTCGATGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATTCTGTACTTCTGGAGAGAAATGAAGATCTGGTCAGTGTAGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCCCTTGTTGGTACCAGATTTCAGCATCGTCGTCATGGAATGTGTCGCATATTAATGGATGAATTGGAGAAGAAGCTCACGCAATTAGGAGTGGAACGTCTCGTTTTACCTGCTGTTCCCACTGTGGTAGATACATGGACCGGCGCTTTTGGATTTTCAAAGATGCCAAACTTTGAAAGATCACAATTTCTAAACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTTTTAGCAAATATTCCCTCTCCAAATTCGGTTTTGCCAACTGAGTTCCAACGAAAACAAGATGCTATCTCCGGAAGCAGTAGTGCTAGTAATAAGTCTCCAGTTTCTGAAGTTTACCAAGCAGAAGAGATAGACAAAAGAGAATCGTTGGATCAACAAATGATGGATACTTCTGAAGGCGATAATGATAATCTTGGCAGTGCTGTTATCGACTGTGTCACCATGGCGGAGCAACCAATTCATGTGGACCAACAACATTGCCAGAATGAAACCACTCAAAAGTGCCAGAATGAAACCACTCAAAAGTGCTCTCTTGTAAAGTGGAGTGGACTGGTGTACTCTAGACGAAGGAAGGCGAAAGGGGAACATGAAGCGTAG
Protein sequence

>Msa0458200

MEEGFATSKNSQSKLKINERVEVKSFEEGFLGSWHPGIVIEREKLKRHVRYENILNDNGLGNFVEVVSVSSVLDGDIGSLSKRGRIRPVPPLVEFEKCDLKYGLCVDVNYQEAWWEGVVNDTCDGMEERTVFFPDLGDEMKVGIQEMRITQDWDEVTEKWEPRGKWLLFELIEESYLPVSIRQIWYDVRQKKEFAVIGEWTLNEKKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEKFEQKEPVVPPAEKDLPKFQNEVSCNGAGQVVAINFEKNEHRLSTDLKSNCSWERVIFSETEYCPDAVKQYVLASDSKATMASLKEKVWKHLAYLGWEIDIDLGSKKYRYKPPNGIHCNRKLYYSLIELCKAESMLNSSPSENGLGIRHPAGDCQVPNLPLSPSEQIQNRVSPLVVGLPSVAVADEQSYCPQAIVEYHKHALKKTCNRADKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPEKQRFFSLNSVCSFIFKESIQKSTISGMQPLNTSTIHEENVDQVLSDDLTSGDSVAANKSTANRKRKRLRNSDGSLPKRRSDESTLRGLRSNERVPKASSSCLSHHKPLNVLSWLIDSNMLLPRSKVFCRAKRGHRTVLSGRITHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSANIFLADGRSLLSCQIQIMQDHKSKEAMIKPHSRLRQGENDYICSVCRFGGELLLCDQCPSSYHKTCLGLEDLPDGEWFCPSCRCGICTQSKFNGGGEDEHFLTCIQCEHKYHVACLKSRDTSKSGSYVESRFCGKDCEKLYAALQSLLGQPVSVGADNLTWTLVKCADSSCELDNSKSGLLAESYSKLNVALSLMHECFKPLKESSSCRDLMENVLFSRWSELNRMNFRGFYSVLLERNEDLVSVATIRVLGDKVAEVPLVGTRFQHRRHGMCRILMDELEKKLTQLGVERLVLPAVPTVVDTWTGAFGFSKMPNFERSQFLNYTFLDFPGTIMCQKFLANIPSPNSVLPTEFQRKQDAISGSSSASNKSPVSEVYQAEEIDKRESLDQQMMDTSEGDNDNLGSAVIDCVTMAEQPIHVDQQHCQNETTQKCQNETTQKCSLVKWSGLVYSRRRKAKGEHEA*