AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458300 MtrunA17_Chr3g0105631 97.680 388 9 0 1 388 1 388 0.0 793
Msa0458300 MtrunA17_Chr5g0401351 48.371 399 182 7 8 388 11 403 2.10e-122 360
Msa0458300 MtrunA17_Chr4g0053961 48.492 398 174 7 17 387 17 410 5.94e-120 353
Msa0458300 MtrunA17_Chr4g0001411 46.482 398 181 13 8 387 25 408 8.65e-104 312
Msa0458300 MtrunA17_Chr4g0068331 38.142 409 217 16 4 387 9 406 2.86e-75 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458300 AT2G30090.1 53.230 387 160 7 8 388 15 386 3.19e-135 392
Msa0458300 AT2G23060.1 46.973 413 179 8 8 387 7 412 1.36e-122 361
Msa0458300 AT4G37580.1 47.277 404 184 7 8 387 4 402 3.92e-120 354
Msa0458300 AT5G67430.1 44.612 399 191 9 3 388 5 386 6.23e-113 335
Msa0458300 AT4G37580.2 46.064 343 160 5 66 387 7 345 4.59e-96 291
Msa0458300 AT5G67430.2 43.675 332 163 7 70 388 1 321 3.06e-91 277
Msa0458300 AT2G23060.2 46.454 282 137 4 116 387 1 278 2.35e-83 256

Find 83 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTTCTTTAACCCTTT+TGG 0.154907 3_3:-53796565 Msa0458300:CDS
TTTAAAGATGATATTAATAT+TGG 0.198020 3_3:-53796751 Msa0458300:CDS
ATTAAGGAATAAATTAAGTT+TGG 0.224040 3_3:-53796791 Msa0458300:CDS
AGCTCTTGTAGGTGGGATTT+TGG 0.230695 3_3:+53796285 None:intergenic
TTCACTAGCTTCCCTGAAAA+TGG 0.245411 3_3:+53796508 None:intergenic
CTATTTGGCACTTGTCCATT+AGG 0.291316 3_3:+53796727 None:intergenic
AATATATTTCCTATATCATT+AGG 0.292377 3_3:+53796811 None:intergenic
GTGTATAACAAACAACAAAA+AGG 0.302675 3_3:+53796643 None:intergenic
CTAAGCATAGCCCAACTATT+TGG 0.310916 3_3:+53796712 None:intergenic
TTAAGGAATAAATTAAGTTT+GGG 0.313536 3_3:-53796790 Msa0458300:CDS
ATGATATAGGAAATATATTA+AGG 0.325837 3_3:-53796807 Msa0458300:CDS
TTTATGCACCACAAATCTTC+AGG 0.326456 3_3:+53796355 None:intergenic
AGGACATCCACCAAAGGATT+TGG 0.330187 3_3:-53797160 Msa0458300:CDS
ATGTCAATTTGTGCACAATA+TGG 0.349042 3_3:-53796479 Msa0458300:CDS
ATCATACTTTAAACCTCTCT+TGG 0.350495 3_3:+53796250 None:intergenic
GATATTAATATTGGGCCTAA+TGG 0.352217 3_3:-53796742 Msa0458300:CDS
AGTTTAACTACACAAAGTTT+AGG 0.361536 3_3:-53796966 Msa0458300:CDS
ATAAAAGTTGTAACTGTTCA+AGG 0.367914 3_3:-53797180 Msa0458300:CDS
TTAAAGATGATATTAATATT+GGG 0.372605 3_3:-53796750 Msa0458300:CDS
GTTTCTCTTCACAGACACTA+TGG 0.386937 3_3:-53797795 Msa0458300:CDS
TAGGGTATGCCCTAGGCTTA+AGG 0.390017 3_3:-53797131 Msa0458300:CDS
TCTCCACATCATAGAAGAAA+AGG 0.405669 3_3:-53797105 Msa0458300:CDS
CCAAAAGGGTTAAAGAAATC+AGG 0.405999 3_3:+53796565 None:intergenic
ATCACTCTATAGAAGATTCA+TGG 0.406094 3_3:-53796851 Msa0458300:CDS
GAGATATTCAAGTTAAAGAT+AGG 0.413312 3_3:-53796673 Msa0458300:CDS
AAGATTATTGTGACTGAAGT+TGG 0.419377 3_3:-53796430 Msa0458300:CDS
TCTCATGCCCTGAAGATTTG+TGG 0.422983 3_3:-53796363 Msa0458300:CDS
TACATAAAATAAAATCCAAA+AGG 0.427077 3_3:+53796550 None:intergenic
ATTCTTCTAATGTTCTTACT+AGG 0.427168 3_3:+53797070 None:intergenic
TGAAGATTTGTGGTGCATAA+AGG 0.428454 3_3:-53796353 Msa0458300:CDS
CTATGGGTGACCCCATTTGT+AGG 0.434012 3_3:-53797778 Msa0458300:CDS
ATAAATTAAGTTTGGGGACA+TGG 0.434467 3_3:-53796783 Msa0458300:CDS
AGCAGAGTTGGACAATGAAT+TGG 0.436658 3_3:-53797223 Msa0458300:CDS
GAATTGGTTGGTGTCATTCA+AGG 0.455654 3_3:-53797207 Msa0458300:CDS
ATGGACAAGTGCCAAATAGT+TGG 0.459933 3_3:-53796723 Msa0458300:CDS
ACTGTTTCGAATCCTACAAA+TGG 0.464122 3_3:+53797766 None:intergenic
TCATACTTTAAACCTCTCTT+GGG 0.469463 3_3:+53796251 None:intergenic
TTTAATGAGTGATGGTTCAC+AGG 0.470283 3_3:+53796922 None:intergenic
AGGGTATGCCCTAGGCTTAA+GGG 0.471150 3_3:-53797130 Msa0458300:CDS
CTGTTTCGAATCCTACAAAT+GGG 0.471230 3_3:+53797767 None:intergenic
GTTGGGCTATGCTTAGTGTA+TGG 0.480182 3_3:-53796705 Msa0458300:CDS
TCTACGAAAAGAGCTCTTGT+AGG 0.482372 3_3:+53796274 None:intergenic
TGGACAAGTGCCAAATAGTT+GGG 0.496162 3_3:-53796722 Msa0458300:CDS
TTAAAGAAATCAGGTAAAGT+AGG 0.499517 3_3:+53796574 None:intergenic
TAGTAAGAACATTAGAAGAA+TGG 0.512758 3_3:-53797068 Msa0458300:CDS
CCAAAGGATTTGGCAAAAGT+AGG 0.514069 3_3:-53797150 Msa0458300:CDS
ACAGGGTTAACAAGAATAGA+TGG 0.514152 3_3:+53796940 None:intergenic
TTATGCACCACAAATCTTCA+GGG 0.517119 3_3:+53796356 None:intergenic
GTTTAGAATCAGAAGCTATG+AGG 0.517776 3_3:-53797888 Msa0458300:CDS
ATGGTTCATTTCTAATGATG+TGG 0.522995 3_3:-53797049 Msa0458300:CDS
ATATACCAGCATCATGTACA+TGG 0.524771 3_3:+53797742 None:intergenic
TCACTCTATAGAAGATTCAT+GGG 0.529453 3_3:-53796850 Msa0458300:CDS
CAAAGGATTTGGCAAAAGTA+GGG 0.531057 3_3:-53797149 Msa0458300:CDS
ACATAAAATAAAATCCAAAA+GGG 0.537102 3_3:+53796551 None:intergenic
CTCCACATCATAGAAGAAAA+GGG 0.538419 3_3:-53797104 Msa0458300:CDS
ATGTATGGTGTGTATCATGA+AGG 0.541875 3_3:-53796532 Msa0458300:CDS
TTTCTCTTCACAGACACTAT+GGG 0.544269 3_3:-53797794 Msa0458300:CDS
GTGGAGATACCCTTAAGCCT+AGG 0.544733 3_3:+53797121 None:intergenic
ATGCTTAGTGTATGGAATAG+TGG 0.546161 3_3:-53796697 Msa0458300:CDS
ATTAAGTTTGGGGACATGGA+TGG 0.547711 3_3:-53796779 Msa0458300:CDS
CATCATAGAAGAAAAGGGAT+TGG 0.551271 3_3:-53797099 Msa0458300:CDS
TGGATGTTAGGTAGCAGAGT+TGG 0.556839 3_3:-53797235 Msa0458300:intron
ACGAAAAGAGCTCTTGTAGG+TGG 0.561968 3_3:+53796277 None:intergenic
TAAGGAATAAATTAAGTTTG+GGG 0.567784 3_3:-53796789 Msa0458300:CDS
CAGTCCCATGTACATGATGC+TGG 0.573817 3_3:-53797747 Msa0458300:intron
TTTAGAATCAGAAGCTATGA+GGG 0.576337 3_3:-53797887 Msa0458300:CDS
TTAGAGAGAAAATGTGAGGT+AGG 0.580395 3_3:-53797833 Msa0458300:CDS
ATTATTGTGACTGAAGTTGG+AGG 0.580952 3_3:-53796427 Msa0458300:CDS
TGGAGATACCCTTAAGCCTA+GGG 0.588065 3_3:+53797122 None:intergenic
TGATGTGGACTATGCATACA+TGG 0.598697 3_3:-53797034 Msa0458300:CDS
GCAAAAGTAGGGTATGCCCT+AGG 0.599208 3_3:-53797138 Msa0458300:CDS
CGAAAAGAGCTCTTGTAGGT+GGG 0.600873 3_3:+53796278 None:intergenic
TTAATGAGTGATGGTTCACA+GGG 0.619510 3_3:+53796923 None:intergenic
AAGAGAAACACACTTTCTGA+TGG 0.631909 3_3:+53797809 None:intergenic
TCAATCATCACATTCCACAT+TGG 0.637430 3_3:-53796393 Msa0458300:CDS
AAATTTAGAGAGAAAATGTG+AGG 0.640564 3_3:-53797837 Msa0458300:CDS
CATGAGAGCAACTTCCAATG+TGG 0.679406 3_3:+53796379 None:intergenic
TATACCAGCATCATGTACAT+GGG 0.680033 3_3:+53797743 None:intergenic
TGTATGGTGTGTATCATGAA+GGG 0.680044 3_3:-53796531 Msa0458300:CDS
TGTTCAAGGACATCCACCAA+AGG 0.683056 3_3:-53797166 Msa0458300:CDS
GAGTTGGACAATGAATTGGT+TGG 0.721734 3_3:-53797219 Msa0458300:CDS
CACTCTATAGAAGATTCATG+GGG 0.722156 3_3:-53796849 Msa0458300:CDS
TGTTTCGAATCCTACAAATG+GGG 0.724283 3_3:+53797768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAGATGATATTAATAT+TGG - chr3_3:53797409-53797428 Msa0458300:intron 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_3:53797410-53797429 Msa0458300:intron 10.0%
!! TTTAAAGATGATATTAATAT+TGG - chr3_3:53797409-53797428 Msa0458300:intron 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_3:53797410-53797429 Msa0458300:intron 10.0%
!! AAAAGAGAAAAGAAAAAAAA+GGG + chr3_3:53796497-53796516 None:intergenic 15.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_3:53796723-53796742 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_3:53797352-53797371 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_3:53797353-53797372 Msa0458300:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_3:53797369-53797388 Msa0458300:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_3:53797370-53797389 Msa0458300:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_3:53797612-53797631 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_3:53797613-53797632 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_3:53797613-53797632 Msa0458300:intron 15.0%
!! AAAAGAGAAAAGAAAAAAAA+GGG + chr3_3:53796497-53796516 None:intergenic 15.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_3:53796723-53796742 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_3:53797352-53797371 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_3:53797353-53797372 Msa0458300:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_3:53797369-53797388 Msa0458300:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_3:53797370-53797389 Msa0458300:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_3:53797612-53797631 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_3:53797613-53797632 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_3:53797613-53797632 Msa0458300:intron 15.0%
!! GAAAAGAGAAAAGAAAAAAA+AGG + chr3_3:53796498-53796517 None:intergenic 20.0%
!!! TCAAGTACAATTTTAAATTG+TGG - chr3_3:53796556-53796575 Msa0458300:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_3:53796778-53796797 Msa0458300:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_3:53797371-53797390 Msa0458300:intron 20.0%
!! GAAAAGAGAAAAGAAAAAAA+AGG + chr3_3:53796498-53796517 None:intergenic 20.0%
!!! TCAAGTACAATTTTAAATTG+TGG - chr3_3:53796556-53796575 Msa0458300:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_3:53796778-53796797 Msa0458300:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_3:53797371-53797390 Msa0458300:intron 20.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_3:53796323-53796342 Msa0458300:CDS 25.0%
!! TCTTTTCTCTTTTCCTTTTA+TGG - chr3_3:53796504-53796523 Msa0458300:CDS 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_3:53796536-53796555 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_3:53796537-53796556 None:intergenic 25.0%
! AAATTGTACTTGAAAGAACA+AGG + chr3_3:53796549-53796568 None:intergenic 25.0%
!! ACAATTTTAAATTGTGGTTG+CGG - chr3_3:53796562-53796581 Msa0458300:CDS 25.0%
!!! TACATTTTGATGCAATATGA+AGG + chr3_3:53796600-53796619 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_3:53796866-53796885 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_3:53796913-53796932 Msa0458300:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_3:53796980-53796999 Msa0458300:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_3:53797093-53797112 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_3:53797092-53797111 Msa0458300:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_3:53797194-53797213 Msa0458300:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_3:53797249-53797268 None:intergenic 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_3:53797340-53797359 Msa0458300:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_3:53797487-53797506 Msa0458300:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_3:53797520-53797539 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_3:53797527-53797546 Msa0458300:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_3:53797573-53797592 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_3:53797574-53797593 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_3:53797589-53797608 None:intergenic 25.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_3:53796323-53796342 Msa0458300:CDS 25.0%
!! TCTTTTCTCTTTTCCTTTTA+TGG - chr3_3:53796504-53796523 Msa0458300:CDS 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_3:53796536-53796555 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_3:53796537-53796556 None:intergenic 25.0%
! AAATTGTACTTGAAAGAACA+AGG + chr3_3:53796549-53796568 None:intergenic 25.0%
!! ACAATTTTAAATTGTGGTTG+CGG - chr3_3:53796562-53796581 Msa0458300:CDS 25.0%
!!! TACATTTTGATGCAATATGA+AGG + chr3_3:53796600-53796619 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_3:53796866-53796885 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_3:53796913-53796932 Msa0458300:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_3:53796980-53796999 Msa0458300:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_3:53797093-53797112 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_3:53797092-53797111 Msa0458300:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_3:53797194-53797213 Msa0458300:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_3:53797249-53797268 None:intergenic 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_3:53797340-53797359 Msa0458300:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_3:53797487-53797506 Msa0458300:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_3:53797520-53797539 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_3:53797527-53797546 Msa0458300:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_3:53797573-53797592 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_3:53797574-53797593 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_3:53797589-53797608 None:intergenic 25.0%
! TTTAGAATCAGAAGCTATGA+GGG - chr3_3:53796273-53796292 Msa0458300:CDS 30.0%
AAATGGGATTGATCCATAAA+AGG + chr3_3:53796520-53796539 None:intergenic 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_3:53796656-53796675 Msa0458300:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_3:53796682-53796701 None:intergenic 30.0%
GATCAAAGAACTAGAAAACA+TGG + chr3_3:53796879-53796898 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_3:53796912-53796931 None:intergenic 30.0%
ATGGTTCATTTCTAATGATG+TGG - chr3_3:53797111-53797130 Msa0458300:CDS 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_3:53797309-53797328 Msa0458300:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_3:53797310-53797329 Msa0458300:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_3:53797338-53797357 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_3:53797377-53797396 Msa0458300:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_3:53797418-53797437 Msa0458300:intron 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_3:53797681-53797700 Msa0458300:intron 30.0%
AAGATTATTGTGACTGAAGT+TGG - chr3_3:53797730-53797749 Msa0458300:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_3:53797823-53797842 Msa0458300:CDS 30.0%
! TTTAGAATCAGAAGCTATGA+GGG - chr3_3:53796273-53796292 Msa0458300:CDS 30.0%
AAATGGGATTGATCCATAAA+AGG + chr3_3:53796520-53796539 None:intergenic 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_3:53796656-53796675 Msa0458300:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_3:53796682-53796701 None:intergenic 30.0%
GATCAAAGAACTAGAAAACA+TGG + chr3_3:53796879-53796898 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_3:53796912-53796931 None:intergenic 30.0%
ATGGTTCATTTCTAATGATG+TGG - chr3_3:53797111-53797130 Msa0458300:CDS 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_3:53797309-53797328 Msa0458300:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_3:53797310-53797329 Msa0458300:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_3:53797338-53797357 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_3:53797377-53797396 Msa0458300:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_3:53797418-53797437 Msa0458300:intron 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_3:53797681-53797700 Msa0458300:intron 30.0%
AAGATTATTGTGACTGAAGT+TGG - chr3_3:53797730-53797749 Msa0458300:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_3:53797823-53797842 Msa0458300:CDS 30.0%
! GTTTAGAATCAGAAGCTATG+AGG - chr3_3:53796272-53796291 Msa0458300:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_3:53796327-53796346 Msa0458300:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_3:53796354-53796373 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_3:53796366-53796385 Msa0458300:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_3:53796395-53796414 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_3:53796396-53796415 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_3:53796397-53796416 None:intergenic 35.0%
TATACCAGCATCATGTACAT+GGG + chr3_3:53796420-53796439 None:intergenic 35.0%
ATATACCAGCATCATGTACA+TGG + chr3_3:53796421-53796440 None:intergenic 35.0%
TCAGTTTACAACTGCAAATG+TGG - chr3_3:53796697-53796716 Msa0458300:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+CGG + chr3_3:53796822-53796841 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_3:53796905-53796924 Msa0458300:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_3:53796909-53796928 None:intergenic 35.0%
CAAAGGATTTGGCAAAAGTA+GGG - chr3_3:53797011-53797030 Msa0458300:CDS 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_3:53797055-53797074 Msa0458300:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_3:53797056-53797075 Msa0458300:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_3:53797061-53797080 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_3:53797061-53797080 Msa0458300:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_3:53797223-53797242 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_3:53797240-53797259 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_3:53797241-53797260 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_3:53797311-53797330 Msa0458300:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_3:53797463-53797482 Msa0458300:intron 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_3:53797598-53797617 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_3:53797595-53797614 Msa0458300:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_3:53797628-53797647 Msa0458300:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_3:53797629-53797648 Msa0458300:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_3:53797733-53797752 Msa0458300:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_3:53797767-53797786 Msa0458300:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_3:53797807-53797826 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_3:53797808-53797827 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_3:53797807-53797826 Msa0458300:CDS 35.0%
! GTTTAGAATCAGAAGCTATG+AGG - chr3_3:53796272-53796291 Msa0458300:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_3:53796327-53796346 Msa0458300:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_3:53796354-53796373 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_3:53796366-53796385 Msa0458300:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_3:53796395-53796414 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_3:53796396-53796415 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_3:53796397-53796416 None:intergenic 35.0%
TATACCAGCATCATGTACAT+GGG + chr3_3:53796420-53796439 None:intergenic 35.0%
ATATACCAGCATCATGTACA+TGG + chr3_3:53796421-53796440 None:intergenic 35.0%
TCAGTTTACAACTGCAAATG+TGG - chr3_3:53796697-53796716 Msa0458300:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+CGG + chr3_3:53796822-53796841 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_3:53796905-53796924 Msa0458300:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_3:53796909-53796928 None:intergenic 35.0%
CAAAGGATTTGGCAAAAGTA+GGG - chr3_3:53797011-53797030 Msa0458300:CDS 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_3:53797055-53797074 Msa0458300:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_3:53797056-53797075 Msa0458300:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_3:53797061-53797080 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_3:53797061-53797080 Msa0458300:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_3:53797223-53797242 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_3:53797240-53797259 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_3:53797241-53797260 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_3:53797311-53797330 Msa0458300:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_3:53797463-53797482 Msa0458300:intron 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_3:53797598-53797617 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_3:53797595-53797614 Msa0458300:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_3:53797628-53797647 Msa0458300:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_3:53797629-53797648 Msa0458300:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_3:53797733-53797752 Msa0458300:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_3:53797767-53797786 Msa0458300:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_3:53797807-53797826 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_3:53797808-53797827 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_3:53797807-53797826 Msa0458300:CDS 35.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_3:53796365-53796384 Msa0458300:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_3:53796667-53796686 None:intergenic 40.0%
AGCAGAGTTGGACAATGAAT+TGG - chr3_3:53796937-53796956 Msa0458300:CDS 40.0%
GAGTTGGACAATGAATTGGT+TGG - chr3_3:53796941-53796960 Msa0458300:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_3:53796953-53796972 Msa0458300:CDS 40.0%
! ACTTTTGCCAAATCCTTTGG+TGG + chr3_3:53797010-53797029 None:intergenic 40.0%
!! CCTACTTTTGCCAAATCCTT+TGG + chr3_3:53797013-53797032 None:intergenic 40.0%
CCAAAGGATTTGGCAAAAGT+AGG - chr3_3:53797010-53797029 Msa0458300:CDS 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_3:53797126-53797145 Msa0458300:CDS 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_3:53797381-53797400 Msa0458300:intron 40.0%
CTATTTGGCACTTGTCCATT+AGG + chr3_3:53797436-53797455 None:intergenic 40.0%
ATGGACAAGTGCCAAATAGT+TGG - chr3_3:53797437-53797456 Msa0458300:intron 40.0%
TGGACAAGTGCCAAATAGTT+GGG - chr3_3:53797438-53797457 Msa0458300:intron 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_3:53797451-53797470 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_3:53797640-53797659 Msa0458300:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_3:53797641-53797660 Msa0458300:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_3:53797655-53797674 None:intergenic 40.0%
TCTACGAAAAGAGCTCTTGT+AGG + chr3_3:53797889-53797908 None:intergenic 40.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_3:53796365-53796384 Msa0458300:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_3:53796667-53796686 None:intergenic 40.0%
AGCAGAGTTGGACAATGAAT+TGG - chr3_3:53796937-53796956 Msa0458300:CDS 40.0%
GAGTTGGACAATGAATTGGT+TGG - chr3_3:53796941-53796960 Msa0458300:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_3:53796953-53796972 Msa0458300:CDS 40.0%
! ACTTTTGCCAAATCCTTTGG+TGG + chr3_3:53797010-53797029 None:intergenic 40.0%
!! CCTACTTTTGCCAAATCCTT+TGG + chr3_3:53797013-53797032 None:intergenic 40.0%
CCAAAGGATTTGGCAAAAGT+AGG - chr3_3:53797010-53797029 Msa0458300:CDS 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_3:53797126-53797145 Msa0458300:CDS 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_3:53797381-53797400 Msa0458300:intron 40.0%
CTATTTGGCACTTGTCCATT+AGG + chr3_3:53797436-53797455 None:intergenic 40.0%
ATGGACAAGTGCCAAATAGT+TGG - chr3_3:53797437-53797456 Msa0458300:intron 40.0%
TGGACAAGTGCCAAATAGTT+GGG - chr3_3:53797438-53797457 Msa0458300:intron 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_3:53797451-53797470 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_3:53797640-53797659 Msa0458300:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_3:53797641-53797660 Msa0458300:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_3:53797655-53797674 None:intergenic 40.0%
TCTACGAAAAGAGCTCTTGT+AGG + chr3_3:53797889-53797908 None:intergenic 40.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_3:53796668-53796687 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_3:53796665-53796684 Msa0458300:CDS 45.0%
TACAGTTGTGGCTGCACTTA+CGG + chr3_3:53796835-53796854 None:intergenic 45.0%
TGCAGCCACAACTGTATATG+CGG - chr3_3:53796839-53796858 Msa0458300:CDS 45.0%
TGGATGTTAGGTAGCAGAGT+TGG - chr3_3:53796925-53796944 Msa0458300:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_3:53796994-53797013 Msa0458300:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_3:53797000-53797019 Msa0458300:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_3:53797041-53797060 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_3:53797455-53797474 Msa0458300:intron 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_3:53797784-53797803 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_3:53797797-53797816 Msa0458300:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_3:53797878-53797897 None:intergenic 45.0%
CGAAAAGAGCTCTTGTAGGT+GGG + chr3_3:53797885-53797904 None:intergenic 45.0%
ACGAAAAGAGCTCTTGTAGG+TGG + chr3_3:53797886-53797905 None:intergenic 45.0%
! TCTTTTCGTAGACCCAAGAG+AGG - chr3_3:53797897-53797916 Msa0458300:CDS 45.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_3:53796668-53796687 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_3:53796665-53796684 Msa0458300:CDS 45.0%
TACAGTTGTGGCTGCACTTA+CGG + chr3_3:53796835-53796854 None:intergenic 45.0%
TGCAGCCACAACTGTATATG+CGG - chr3_3:53796839-53796858 Msa0458300:CDS 45.0%
TGGATGTTAGGTAGCAGAGT+TGG - chr3_3:53796925-53796944 Msa0458300:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_3:53796994-53797013 Msa0458300:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_3:53797000-53797019 Msa0458300:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_3:53797041-53797060 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_3:53797455-53797474 Msa0458300:intron 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_3:53797784-53797803 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_3:53797797-53797816 Msa0458300:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_3:53797878-53797897 None:intergenic 45.0%
CGAAAAGAGCTCTTGTAGGT+GGG + chr3_3:53797885-53797904 None:intergenic 45.0%
ACGAAAAGAGCTCTTGTAGG+TGG + chr3_3:53797886-53797905 None:intergenic 45.0%
! TCTTTTCGTAGACCCAAGAG+AGG - chr3_3:53797897-53797916 Msa0458300:CDS 45.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_3:53796382-53796401 Msa0458300:CDS 50.0%
CAGTCCCATGTACATGATGC+TGG - chr3_3:53796413-53796432 Msa0458300:CDS 50.0%
GTGGTCCGCATATACAGTTG+TGG + chr3_3:53796847-53796866 None:intergenic 50.0%
GCAAAAGTAGGGTATGCCCT+AGG - chr3_3:53797022-53797041 Msa0458300:CDS 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_3:53797029-53797048 Msa0458300:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_3:53797030-53797049 Msa0458300:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_3:53797042-53797061 None:intergenic 50.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_3:53796382-53796401 Msa0458300:CDS 50.0%
CAGTCCCATGTACATGATGC+TGG - chr3_3:53796413-53796432 Msa0458300:CDS 50.0%
GTGGTCCGCATATACAGTTG+TGG + chr3_3:53796847-53796866 None:intergenic 50.0%
GCAAAAGTAGGGTATGCCCT+AGG - chr3_3:53797022-53797041 Msa0458300:CDS 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_3:53797029-53797048 Msa0458300:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_3:53797030-53797049 Msa0458300:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_3:53797042-53797061 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 53796258 53797924 53796258 ID=Msa0458300;Name=Msa0458300
chr3_3 mRNA 53796258 53797924 53796258 ID=Msa0458300-mRNA-1;Parent=Msa0458300;Name=Msa0458300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0|0.5|2|0|388
chr3_3 exon 53797748 53797924 53797748 ID=Msa0458300-mRNA-1:exon:10602;Parent=Msa0458300-mRNA-1
chr3_3 exon 53796258 53797247 53796258 ID=Msa0458300-mRNA-1:exon:10601;Parent=Msa0458300-mRNA-1
chr3_3 CDS 53797748 53797924 53797748 ID=Msa0458300-mRNA-1:cds;Parent=Msa0458300-mRNA-1
chr3_3 CDS 53796258 53797247 53796258 ID=Msa0458300-mRNA-1:cds;Parent=Msa0458300-mRNA-1
Gene Sequence

>Msa0458300

ATGGAATTCAACAAGTTTAGAATCAGAAGCTATGAGGGTCAATCAGCTGATAGAGCTCAAGTTGAAAATTTAGAGAGAAAATGTGAGGTAGGACCATCAGAAAGTGTGTTTCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATTCGAAACAGTCCCATGTACATGATGCTGGTAGCAGAGTTGGACAATGAATTGGTTGGTGTCATTCAAGGCTCTATAAAAGTTGTAACTGTTCAAGGACATCCACCAAAGGATTTGGCAAAAGTAGGGTATGCCCTAGGCTTAAGGGTATCTCCACATCATAGAAGAAAAGGGATTGGTTCAAGCCTAGTAAGAACATTAGAAGAATGGTTCATTTCTAATGATGTGGACTATGCATACATGGCAACAGAGAAAGATAATCATGCATCAGTCAATCTCTTCATGAACAAGTTTAACTACACAAAGTTTAGGACACCATCTATTCTTGTTAACCCTGTGAACCATCACTCATTAAAAATCTCAAACAACATTGAAATATCTAGATTAAAAATTGAACAAGCTGAATCACTCTATAGAAGATTCATGGGGTCCACAGAGTTTTTTCCTAATGATATAGGAAATATATTAAGGAATAAATTAAGTTTGGGGACATGGATGGCATATTTTAAAGATGATATTAATATTGGGCCTAATGGACAAGTGCCAAATAGTTGGGCTATGCTTAGTGTATGGAATAGTGGTGAGATATTCAAGTTAAAGATAGGAAAAGCACCTTTTTGTTGTTTGTTATACACAAAAAGTTGGTGCTTGATTGATAAAATTTTCCCATGTTTAAAATTGCCTACTTTACCTGATTTCTTTAACCCTTTTGGATTTTATTTTATGTATGGTGTGTATCATGAAGGGCCATTTTCAGGGAAGCTAGTGAAAGCTCTATGTCAATTTGTGCACAATATGGCTAAAGAGAGTAAAGATGAGAAGTGTAAGATTATTGTGACTGAAGTTGGAGGAAGAGATGAAGTCAATCATCACATTCCACATTGGAAGTTGCTCTCATGCCCTGAAGATTTGTGGTGCATAAAGGCACTGAAAAATGAAGGACTTTCAATTAATACTTTTCATGAATTAACCAAAATCCCACCTACAAGAGCTCTTTTCGTAGACCCAAGAGAGGTTTAA

Protein sequence

>Msa0458300

MEFNKFRIRSYEGQSADRAQVENLERKCEVGPSESVFLFTDTMGDPICRIRNSPMYMMLVAELDNELVGVIQGSIKVVTVQGHPPKDLAKVGYALGLRVSPHHRRKGIGSSLVRTLEEWFISNDVDYAYMATEKDNHASVNLFMNKFNYTKFRTPSILVNPVNHHSLKISNNIEISRLKIEQAESLYRRFMGSTEFFPNDIGNILRNKLSLGTWMAYFKDDINIGPNGQVPNSWAMLSVWNSGEIFKLKIGKAPFCCLLYTKSWCLIDKIFPCLKLPTLPDFFNPFGFYFMYGVYHEGPFSGKLVKALCQFVHNMAKESKDEKCKIIVTEVGGRDEVNHHIPHWKLLSCPEDLWCIKALKNEGLSINTFHELTKIPPTRALFVDPREV*