AlfalfaGEDB | Msa0458710

M. sativa cultivar zhongmu-4 / Msa0458710

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458710	KAF5468189.1	49.333	600	205	10	30	537	104	696	0.0	548

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458710	sp\|P17801\|KPRO_MAIZE	39.510	286	131	4	291	534	531	816	2.02e-58	211
Msa0458710	sp\|P17801\|KPRO_MAIZE	33.696	276	152	6	38	286	121	392	4.43e-37	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458710	A0A834CQR9	49.333	600	205	10	30	537	104	696	0.0	548

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458710	MtrunA17_Chr3g0134321	44.923	581	228	17	33	531	105	675	4.98e-148	441
Msa0458710	MtrunA17_Chr3g0106121	71.044	297	43	2	283	537	505	800	9.28e-140	423
Msa0458710	MtrunA17_Chr3g0106121	63.924	316	80	4	5	286	65	380	5.44e-131	400
Msa0458710	MtrunA17_Chr3g0106181	68.581	296	51	2	283	537	49	343	2.44e-135	396
Msa0458710	MtrunA17_Chr3g0106131	64.486	321	65	3	265	537	477	796	3.36e-129	395
Msa0458710	MtrunA17_Chr3g0106131	62.069	319	81	3	5	286	65	380	4.78e-125	385
Msa0458710	MtrunA17_Chr3g0106141	63.551	321	69	3	265	537	479	799	4.86e-129	395
Msa0458710	MtrunA17_Chr3g0106141	69.504	282	61	3	30	286	99	380	1.53e-126	389
Msa0458710	MtrunA17_Chr3g0106161	64.948	291	61	2	287	536	342	632	5.82e-123	374
Msa0458710	MtrunA17_Chr3g0106161	57.727	220	66	3	92	286	1	218	9.88e-75	249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458710	AT2G19130.1	39.590	293	127	8	282	531	482	767	2.98e-53	194
Msa0458710	AT2G19130.1	25.987	304	160	12	38	292	107	394	3.57e-11	66.6
Msa0458710	AT4G00340.2	37.979	287	125	7	292	531	459	739	6.24e-51	187
Msa0458710	AT4G00340.1	37.979	287	125	7	292	531	480	760	7.07e-51	187
Msa0458710	AT1G34300.1	38.062	289	138	9	281	531	472	757	2.55e-49	182
Msa0458710	AT4G32300.1	35.192	287	144	7	283	531	483	765	1.61e-46	174
Msa0458710	AT5G24080.2	33.648	318	156	10	259	531	495	802	4.25e-45	171
Msa0458710	AT5G24080.3	33.648	318	156	10	259	531	368	675	4.59e-45	169
Msa0458710	AT5G24080.1	33.648	318	156	10	259	531	368	675	4.59e-45	169
Msa0458710	AT3G26940.1	36.364	297	143	9	279	531	58	352	9.36e-44	161

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Find 122 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATAAAATTGCACT+AGG	0.624101	3_3:-54704042	Msa0458710:CDS
AAACCCCAAAACATACTAAT+TGG	0.276921	3_3:-54703955	Msa0458710:CDS
AAAGGTTATAGTGAAGAGAT+TGG	0.456149	3_3:-54704321	Msa0458710:CDS
AACATTACCATCAAATTCAA+GGG	0.559258	3_3:+54705107	None:intergenic
AAGAAGGAAAGTATCAGAAG+TGG	0.450363	3_3:-54703653	Msa0458710:CDS
AAGAATCATGCTCATGACTT+TGG	0.409097	3_3:+54703485	None:intergenic
AAGTATCAGAAGTGGGATGT+TGG	0.479266	3_3:-54703645	Msa0458710:CDS
AATCCAAAATCCGCTACCTT+GGG	0.507379	3_3:+54703919	None:intergenic
ACAAATAGTTGACCCTGCAT+TGG	0.498939	3_3:-54703617	Msa0458710:CDS
ACAAGAAGTGGTCCGTTTCA+GGG	0.480458	3_3:-54705061	Msa0458710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAAAGTTGAAGTAATTCT+TGG	+	chr3_3:54703683-54703702	None:intergenic	30.0%
GAATTACTTCAACTTTGTCT+AGG	-	chr3_3:54703684-54703703	Msa0458710:CDS	30.0%
AAGTTAGATAATTCTCTGTG+AGG	+	chr3_3:54703887-54703906	None:intergenic	30.0%
GATTCATGGATAAGAAAACA+AGG	+	chr3_3:54703915-54703934	None:intergenic	30.0%
AGTTATGAACAACAGCTAAA+AGG	-	chr3_3:54704022-54704041	Msa0458710:CDS	30.0%
AGAAGCAATATACGATGAAA+TGG	+	chr3_3:54704268-54704287	None:intergenic	30.0%
CCAAAATTCAATATCCAATG+AGG	-	chr3_3:54704290-54704309	Msa0458710:CDS	30.0%
TGTATATTAAGAACTAGTGG+GGG	+	chr3_3:54704475-54704494	None:intergenic	30.0%
CTGTATATTAAGAACTAGTG+GGG	+	chr3_3:54704476-54704495	None:intergenic	30.0%
CCTGTATATTAAGAACTAGT+GGG	+	chr3_3:54704477-54704496	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	54703483	54708455	54703483	ID=Msa0458710;Name=Msa0458710
chr3_3	mRNA	54703483	54708455	54703483	ID=Msa0458710-mRNA-1;Parent=Msa0458710;Name=Msa0458710-mRNA-1;_AED=0.38;_eAED=0.40;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|537
chr3_3	exon	54708361	54708455	54708361	ID=Msa0458710-mRNA-1:exon:10828;Parent=Msa0458710-mRNA-1
chr3_3	exon	54705024	54705581	54705024	ID=Msa0458710-mRNA-1:exon:10827;Parent=Msa0458710-mRNA-1
chr3_3	exon	54704730	54704950	54704730	ID=Msa0458710-mRNA-1:exon:10826;Parent=Msa0458710-mRNA-1
chr3_3	exon	54703854	54704348	54703854	ID=Msa0458710-mRNA-1:exon:10825;Parent=Msa0458710-mRNA-1
chr3_3	exon	54703483	54703727	54703483	ID=Msa0458710-mRNA-1:exon:10824;Parent=Msa0458710-mRNA-1
chr3_3	CDS	54708361	54708455	54708361	ID=Msa0458710-mRNA-1:cds;Parent=Msa0458710-mRNA-1
chr3_3	CDS	54705024	54705581	54705024	ID=Msa0458710-mRNA-1:cds;Parent=Msa0458710-mRNA-1
chr3_3	CDS	54704730	54704950	54704730	ID=Msa0458710-mRNA-1:cds;Parent=Msa0458710-mRNA-1
chr3_3	CDS	54703854	54704348	54703854	ID=Msa0458710-mRNA-1:cds;Parent=Msa0458710-mRNA-1
chr3_3	CDS	54703483	54703727	54703483	ID=Msa0458710-mRNA-1:cds;Parent=Msa0458710-mRNA-1

Gene Sequence

>Msa0458710

ATGGCATACCTAAAGACTGCCAATTATGCTCACATATTCTATATGTCTAACACCATCTCAAGTGTTCTTGAAGAGTTTTACACTTGGATCATAAGTGCGTCCTATTCCAATGTTTGGTCCACAAACACAAACTCATCCAAACCACTTGAGTTGTTTCTATATGACACGGGAAATCTCGTTCTCAGAGTGCACAACGCAGATGGTTTGATTTTGTGGCAAAGTTTTGATTTTCCAACAGATACCCTCCTTCCTGATCAAAGTTTCACAAGGTACATGAACCTTGTTTCCTCCAAAATGGACAACAAATATTCATCAGGCTTCTACAAGCTATTTTTTGACAATGACAACATCCTACATCTTCTCTACGATGGCCCTCAAGTTTCAAGTATTTACTGGCCAGACCCTTCGCTTAAGAGTTGGGATGTCGGTAGATCATCATATAACAGTACTAGGATTGCAAAACTAGATGTTTTAGGGAATTTCAGTTCTTCCGATGATTTTACTTTAAAGGCTAGTGATTATGGTATTGTGCTCCAACGAAGATTGACCCTTGAATTTGATGGTAATGTTCGTGTTTATAGCCGAAAACATGGACAAGAAGTGGTCCGTTTCAGGGCAATTTCATCAACAACCTTTCAAAATACATGGAATTTGATCGATAATCAAGATTGGTCAAAAGGGTGCAAACCAAGCTTCCAACTTTCATGCAACAGCAAAACAGGGTTGGAGACTCGCTTCCAACGCTTACCCCATGTTGAGTTTTTTGGATATGATTATCACTACAAAGCTAATTACACTTATAAACAATGTAAGCATTTTTGCTTGCGAATGTGCAAATGTGTGGGCTTCCAGTATCGCTCGAATTATTCCCAAGCAACAAAAGGTTATAGTGAAGAGATTGGAAAGGGTGCTGGAGGAACTGTGTATAAGGGAATTTTATCTTATAATCGAGTTGTGGCTATAAAGCGATTGCATCAAGTGAATCAAGGGGAGAATGAGTTTCTGGCTGAAGTGACCCTCATTGGGAGGCTCAACCACATGAACTTAATTGACATGATGGGGTATTGTGCCGAGGGAAAACACAAATTGTTGGTTTTTGAGTACATGGAAAAGGGTTCTTTAGCTGAGAATTTGTCATCAAATGCACTTAATTGGGGCAAAAGGTATAAAATTGCACTAGGAACTGCGAAAGCTCTTGCCTATTTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGACATAAAACCCCAAAACATACTAATTGGCTCTGATTACCAACCCAAGGTAGCGGATTTTGGATTGTCTAAGCTTCTACAAAGGAACAATCTTGATAATTCAAGTTTTTCAAGGATGAGAGGAACAAGAGATGATGGAATAGTGTCACATAATGAGAGGTTAGTAACATGGGTGAGAGAGAAAAGAAGGAAAGTATCAGAAGTGGGATGTTGGGTTGAACAAATAGTTGACCCTGCATTGGAATTAGATTATGACTTTGCTCAATTGGAGACTTTGGCAGTGGTGGCTTTGGCTTGTGTAGAGGAAGAGAAAAATGTGAGACCCACCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGAGCATGATTCTTGA

Protein sequence

>Msa0458710

MAYLKTANYAHIFYMSNTISSVLEEFYTWIISASYSNVWSTNTNSSKPLELFLYDTGNLVLRVHNADGLILWQSFDFPTDTLLPDQSFTRYMNLVSSKMDNKYSSGFYKLFFDNDNILHLLYDGPQVSSIYWPDPSLKSWDVGRSSYNSTRIAKLDVLGNFSSSDDFTLKASDYGIVLQRRLTLEFDGNVRVYSRKHGQEVVRFRAISSTTFQNTWNLIDNQDWSKGCKPSFQLSCNSKTGLETRFQRLPHVEFFGYDYHYKANYTYKQCKHFCLRMCKCVGFQYRSNYSQATKGYSEEIGKGAGGTVYKGILSYNRVVAIKRLHQVNQGENEFLAEVTLIGRLNHMNLIDMMGYCAEGKHKLLVFEYMEKGSLAENLSSNALNWGKRYKIALGTAKALAYLHEECLEWILHCDIKPQNILIGSDYQPKVADFGLSKLLQRNNLDNSSFSRMRGTRDDGIVSHNERLVTWVREKRRKVSEVGCWVEQIVDPALELDYDFAQLETLAVVALACVEEEKNVRPTMSQVVERLQSHEHDS*