AlfalfaGEDB | Msa0458840

M. sativa cultivar zhongmu-4 / Msa0458840

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458840	AES69527.1	93.089	246	15	1	1	246	1	244	1.99e-155	441

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458840	sp\|Q9FJK3\|AGL80_ARATH	44.516	155	85	1	1	155	1	154	1.30e-28	113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458840	G7IWW4	93.089	246	15	1	1	246	1	244	9.53e-156	441

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TFs/TRs:

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Gene ID	Type	Classification
Msa0458840	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458840	MtrunA17_Chr3g0106421	93.119	218	13	1	29	246	1	216	1.04e-138	388
Msa0458840	MtrunA17_Chr2g0283941	42.437	238	136	1	1	237	1	238	4.36e-60	189
Msa0458840	MtrunA17_Chr3g0107461	48.408	157	81	0	1	157	1	157	5.53e-44	145
Msa0458840	MtrunA17_Chr3g0107381	43.333	180	91	3	1	176	1	173	9.07e-44	147
Msa0458840	MtrunA17_Chr3g0106501	48.889	135	69	0	29	163	1	135	7.05e-40	135
Msa0458840	MtrunA17_Chr4g0014321	42.857	154	88	0	1	154	1	154	1.77e-39	136
Msa0458840	MtrunA17_Chr3g0110131	36.752	234	140	3	1	228	1	232	5.57e-39	135
Msa0458840	MtrunA17_Chr8g0351751	38.095	168	102	1	1	166	1	168	1.46e-34	124
Msa0458840	MtrunA17_Chr3g0105791	43.262	141	80	0	29	169	1	141	4.65e-33	117
Msa0458840	MtrunA17_Chr4g0013041	35.714	196	117	3	1	189	1	194	4.99e-33	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458840	AT3G05860.2	37.173	191	105	4	1	189	1	178	9.98e-30	110
Msa0458840	AT3G05860.3	35.450	189	114	3	1	187	1	183	1.08e-29	112
Msa0458840	AT5G48670.1	44.516	155	85	1	1	155	1	154	1.32e-29	113
Msa0458840	AT3G05860.1	37.173	191	105	4	1	189	1	178	1.68e-29	111
Msa0458840	AT1G65300.1	33.032	221	135	5	3	211	2	221	8.75e-27	105
Msa0458840	AT1G65330.1	44.348	115	64	0	3	117	2	116	3.82e-25	100
Msa0458840	AT5G26650.1	32.836	201	110	6	4	202	2	179	4.79e-23	96.7
Msa0458840	AT5G27960.1	29.082	196	127	3	4	187	2	197	3.92e-22	93.2
Msa0458840	AT2G28700.1	34.815	135	85	1	1	135	1	132	3.73e-20	88.2
Msa0458840	AT5G27810.1	46.067	89	48	0	29	117	1	89	6.12e-20	82.8

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Find 53 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAAATCATCAAATGG+TGG	0.629108	3_3:-55023029	None:intergenic
AAATGGAGCTGAAGCTATAA+AGG	0.393018	3_3:+55022848	Msa0458840:CDS
AATCAATAAGTCGAAACGGA+TGG	0.645843	3_3:+55021055	Msa0458840:CDS
AATCATCAAATGGTGGCATG+AGG	0.619303	3_3:-55023022	None:intergenic
AATGAATTGAGCACCCTTTG+TGG	0.491238	3_3:+55022447	Msa0458840:CDS
ACATAATCAATAAGTCGAAA+CGG	0.519099	3_3:+55021051	Msa0458840:CDS
ACATACCTCTACCCCACAAA+GGG	0.555523	3_3:-55022460	None:intergenic
ACCATGGTCAAGCAGAAGTT+TGG	0.357178	3_3:+55022502	Msa0458840:CDS
AGATTGATCCAAATCCATTT+GGG	0.442780	3_3:-55023067	None:intergenic
AGGAGATACACGGGATAACA+TGG	0.551769	3_3:+55022920	Msa0458840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATAGGGTAAATCATTGG+TGG	-	chr3_3:55021470-55021489	None:intergenic	30.0%
GAGGTATGTGTAATAATCTA+TGG	+	chr3_3:55022474-55022493	Msa0458840:CDS	30.0%
ATAATCTATGGTGAAAACCA+TGG	+	chr3_3:55022486-55022505	Msa0458840:CDS	30.0%
CAAAAGAAACAAAAAGATGG+TGG	+	chr3_3:55022581-55022600	Msa0458840:CDS	30.0%
ATATGAAGGAAGTTAATCAG+AGG	+	chr3_3:55022787-55022806	Msa0458840:CDS	30.0%
TATAAAGGATGGAGATTTGT+TGG	+	chr3_3:55022863-55022882	Msa0458840:CDS	30.0%
AGATTGATCCAAATCCATTT+GGG	-	chr3_3:55023070-55023089	None:intergenic	30.0%
TAGATTGATCCAAATCCATT+TGG	-	chr3_3:55023071-55023090	None:intergenic	30.0%
ATAATAGGGTAAATCATTGG+TGG	-	chr3_3:55021470-55021489	None:intergenic	30.0%
GAGGTATGTGTAATAATCTA+TGG	+	chr3_3:55022474-55022493	Msa0458840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	55021023	55023091	55021023	ID=Msa0458840;Name=Msa0458840
chr3_3	mRNA	55021023	55023091	55021023	ID=Msa0458840-mRNA-1;Parent=Msa0458840;Name=Msa0458840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|246
chr3_3	exon	55021023	55021101	55021023	ID=Msa0458840-mRNA-1:exon:10864;Parent=Msa0458840-mRNA-1
chr3_3	exon	55022430	55023091	55022430	ID=Msa0458840-mRNA-1:exon:10865;Parent=Msa0458840-mRNA-1
chr3_3	CDS	55021023	55021101	55021023	ID=Msa0458840-mRNA-1:cds;Parent=Msa0458840-mRNA-1
chr3_3	CDS	55022430	55023091	55022430	ID=Msa0458840-mRNA-1:cds;Parent=Msa0458840-mRNA-1

Gene Sequence

>Msa0458840

ATGGGCAGAAAGAAGCTCAAACTTGAATACATAATCAATAAGTCGAAACGGATGGCGACATTCAAAAAAAGAACAGAAGGTATAATGAAGAAAGCTAATGAATTGAGCACCCTTTGTGGGGTAGAGGTATGTGTAATAATCTATGGTGAAAACCATGGTCAAGCAGAAGTTTGGCCATCCGCGATAGGACTAGAACGTGTGTTGCACAAGTTTGAGAGTTTGTCTGAACTCAAAAGAAACAAAAAGATGGTGGATCTATATAGCTTTTGGATGCAAAGGATTGAAAAAGCCAGAGAGAAGTATGAGAAAGCAATGATGGAAAACAAGAAGAACGAAATGACTAATTTTATACGTCAATTTATTCCTACTCGTAACTATAATGTTGGTGATCTGAGCTTAAATGATATCAATTATCTGACGACTTTAATTGATGACAATATGAAGGAAGTTAATCAGAGGTTGGATTCAATGGTAACCCAAGCCCATGAGCAGGTTGTAAATGGAGCTGAAGCTATAAAGGATGGAGATTTGTTGGCTAGTACAAACATTGCTCAAGTGCCGCTGAGTGGAGGAGATACACGGGATAACATGGATGAGGTTGCTGATACCCATGGTTATGAGACTAACATGAATTATGGTTTGCAGAGTGATGAGCAACTACCTATGGACTTCCTCATGCCACCATTTGATGATTTTGATTTTGATTTTGATTTCGACCCAAATGGATTTGGATCAATCTAG

Protein sequence

>Msa0458840

MGRKKLKLEYIINKSKRMATFKKRTEGIMKKANELSTLCGVEVCVIIYGENHGQAEVWPSAIGLERVLHKFESLSELKRNKKMVDLYSFWMQRIEKAREKYEKAMMENKKNEMTNFIRQFIPTRNYNVGDLSLNDINYLTTLIDDNMKEVNQRLDSMVTQAHEQVVNGAEAIKDGDLLASTNIAQVPLSGGDTRDNMDEVADTHGYETNMNYGLQSDEQLPMDFLMPPFDDFDFDFDFDPNGFGSI*