Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458910 | PNY00982.1 | 99.401 | 167 | 1 | 0 | 1 | 167 | 1 | 167 | 5.92e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458910 | sp|Q96S44|PRPK_HUMAN | 47.647 | 170 | 86 | 2 | 1 | 167 | 84 | 253 | 1.52e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458910 | A0A2K3ND63 | 99.401 | 167 | 1 | 0 | 1 | 167 | 1 | 167 | 2.83e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458910 | MtrunA17_Chr3g0106561 | 98.204 | 167 | 3 | 0 | 1 | 167 | 60 | 226 | 3.18e-122 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458910 | AT5G26110.3 | 79.042 | 167 | 35 | 0 | 1 | 167 | 60 | 226 | 2.02e-98 | 283 |
| Msa0458910 | AT5G26110.1 | 79.042 | 167 | 35 | 0 | 1 | 167 | 60 | 226 | 2.02e-98 | 283 |
| Msa0458910 | AT5G26110.2 | 79.012 | 162 | 34 | 0 | 6 | 167 | 2 | 163 | 1.29e-95 | 274 |
Find 38 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATGTATTTCTTGAATT+CGG | 0.327087 | 3_3:+55107259 | Msa0458910:CDS |
| CACGATGGTGGTCTTGTTCA+TGG | 0.374963 | 3_3:+55107352 | Msa0458910:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3_3:+55107310 | Msa0458910:CDS |
| CAACCAAGGCAAGGCGACTT+GGG | 0.419060 | 3_3:+55107158 | Msa0458910:CDS |
| ACCACTGCTTCGATGATTTG+CGG | 0.435224 | 3_3:-55108627 | None:intergenic |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3_3:+55107532 | Msa0458910:intron |
| ACAACCAAGGCAAGGCGACT+TGG | 0.438223 | 3_3:+55107157 | Msa0458910:CDS |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3_3:-55107577 | None:intergenic |
| AACCCCAAGTCGCCTTGCCT+TGG | 0.476565 | 3_3:-55107161 | None:intergenic |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3_3:+55107402 | Msa0458910:CDS |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3_3:+55107226 | Msa0458910:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3_3:+55107186 | Msa0458910:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3_3:+55107622 | Msa0458910:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.543009 | 3_3:-55107250 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3_3:-55107618 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3_3:-55108653 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3_3:-55107590 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3_3:-55107211 | None:intergenic |
| TTTCTTGAATTCGGATCATG+TGG | 0.569490 | 3_3:+55107268 | Msa0458910:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.570787 | 3_3:+55108771 | Msa0458910:CDS |
| GGCATCAATGAAGAGCGGTT+AGG | 0.593530 | 3_3:+55107289 | Msa0458910:CDS |
| CGAGGTGCACAACCAAGGCA+AGG | 0.594894 | 3_3:+55107149 | Msa0458910:CDS |
| AACCAAGGCAAGGCGACTTG+GGG | 0.602601 | 3_3:+55107159 | Msa0458910:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3_3:+55108760 | Msa0458910:CDS |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3_3:-55107190 | None:intergenic |
| ACCGCAAATCATCGAAGCAG+TGG | 0.617260 | 3_3:+55108626 | Msa0458910:CDS |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3_3:-55107617 | None:intergenic |
| GGAGGCGAGGTGCACAACCA+AGG | 0.637554 | 3_3:+55107144 | None:intergenic |
| CAAATTGTAGTGCGACAAAG+AGG | 0.641363 | 3_3:+55108750 | Msa0458910:intron |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3_3:-55107189 | None:intergenic |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3_3:+55108655 | Msa0458910:CDS |
| ATTGCAAAGTTACACGATGG+TGG | 0.654578 | 3_3:+55107340 | Msa0458910:CDS |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3_3:+55107630 | Msa0458910:CDS |
| AACTCAGAATCATCCAACCA+TGG | 0.691341 | 3_3:-55108784 | None:intergenic |
| CATGTGGCATCAATGAAGAG+CGG | 0.710732 | 3_3:+55107284 | Msa0458910:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3_3:+55108767 | Msa0458910:CDS |
| GTAATTGCAAAGTTACACGA+TGG | 0.807657 | 3_3:+55107337 | Msa0458910:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3_3:-55107188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr3_3:55108032-55108051 | Msa0458910:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr3_3:55108032-55108051 | Msa0458910:intron | 0.0% |
| !! | AATATTTATTACATTTACTT+AGG | + | chr3_3:55107456-55107475 | Msa0458910:intron | 10.0% |
| !! | AAAAAAAAAAAAAGTTCATT+TGG | - | chr3_3:55108154-55108173 | None:intergenic | 10.0% |
| !! | AATATTTATTACATTTACTT+AGG | + | chr3_3:55107456-55107475 | Msa0458910:intron | 10.0% |
| !! | AAAAAAAAAAAAAGTTCATT+TGG | - | chr3_3:55108154-55108173 | None:intergenic | 10.0% |
| !! | TATTTAACACTATAACAATT+AGG | - | chr3_3:55107684-55107703 | None:intergenic | 15.0% |
| !! | TAAAATTCTAATAGTATAAC+AGG | - | chr3_3:55107897-55107916 | None:intergenic | 15.0% |
| !!! | AAATTTTGAACAAAAACTTT+AGG | + | chr3_3:55107943-55107962 | Msa0458910:intron | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | - | chr3_3:55108028-55108047 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | - | chr3_3:55108443-55108462 | None:intergenic | 15.0% |
| !! | TATTTAACACTATAACAATT+AGG | - | chr3_3:55107684-55107703 | None:intergenic | 15.0% |
| !! | TAAAATTCTAATAGTATAAC+AGG | - | chr3_3:55107897-55107916 | None:intergenic | 15.0% |
| !!! | AAATTTTGAACAAAAACTTT+AGG | + | chr3_3:55107943-55107962 | Msa0458910:intron | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | - | chr3_3:55108028-55108047 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | - | chr3_3:55108443-55108462 | None:intergenic | 15.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | + | chr3_3:55107259-55107278 | Msa0458910:CDS | 20.0% |
| !! | TGTTATAGTGTTAAATACTA+AGG | + | chr3_3:55107687-55107706 | Msa0458910:intron | 20.0% |
| !! | AATACTAAGGATATAAAAAC+AGG | + | chr3_3:55107700-55107719 | Msa0458910:intron | 20.0% |
| !! | ATACTAAGGATATAAAAACA+GGG | + | chr3_3:55107701-55107720 | Msa0458910:intron | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | - | chr3_3:55107858-55107877 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | - | chr3_3:55107859-55107878 | None:intergenic | 20.0% |
| !!! | ATTTGAAATATCAATACCAT+GGG | + | chr3_3:55108009-55108028 | Msa0458910:intron | 20.0% |
| !! | TAAATAGTCTTTATTGCTTT+CGG | - | chr3_3:55108070-55108089 | None:intergenic | 20.0% |
| !! | GCAATAAAGACTATTTATAT+TGG | + | chr3_3:55108073-55108092 | Msa0458910:intron | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | - | chr3_3:55108444-55108463 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAGATAATGCA+AGG | + | chr3_3:55108476-55108495 | Msa0458910:intron | 20.0% |
| !! | CAATACTAACAAATATTAGA+TGG | - | chr3_3:55108690-55108709 | None:intergenic | 20.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | + | chr3_3:55107259-55107278 | Msa0458910:CDS | 20.0% |
| !! | TGTTATAGTGTTAAATACTA+AGG | + | chr3_3:55107687-55107706 | Msa0458910:intron | 20.0% |
| !! | AATACTAAGGATATAAAAAC+AGG | + | chr3_3:55107700-55107719 | Msa0458910:intron | 20.0% |
| !! | ATACTAAGGATATAAAAACA+GGG | + | chr3_3:55107701-55107720 | Msa0458910:intron | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | - | chr3_3:55107858-55107877 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | - | chr3_3:55107859-55107878 | None:intergenic | 20.0% |
| !!! | ATTTGAAATATCAATACCAT+GGG | + | chr3_3:55108009-55108028 | Msa0458910:intron | 20.0% |
| !! | TAAATAGTCTTTATTGCTTT+CGG | - | chr3_3:55108070-55108089 | None:intergenic | 20.0% |
| !! | GCAATAAAGACTATTTATAT+TGG | + | chr3_3:55108073-55108092 | Msa0458910:intron | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | - | chr3_3:55108444-55108463 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAGATAATGCA+AGG | + | chr3_3:55108476-55108495 | Msa0458910:intron | 20.0% |
| !! | CAATACTAACAAATATTAGA+TGG | - | chr3_3:55108690-55108709 | None:intergenic | 20.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | + | chr3_3:55107226-55107245 | Msa0458910:CDS | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | - | chr3_3:55107593-55107612 | None:intergenic | 25.0% |
| !! | GATTTGAAATATCAATACCA+TGG | + | chr3_3:55108008-55108027 | Msa0458910:intron | 25.0% |
| ! | AAAAAGTTCATTTGGTACAT+AGG | - | chr3_3:55108146-55108165 | None:intergenic | 25.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | - | chr3_3:55108296-55108315 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTATCTGACA+AGG | + | chr3_3:55108306-55108325 | Msa0458910:intron | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | - | chr3_3:55108348-55108367 | None:intergenic | 25.0% |
| ! | AAAGTGACATATAATATGAG+AGG | - | chr3_3:55108349-55108368 | None:intergenic | 25.0% |
| ! | AATACCTTCTTGATATTCTA+GGG | - | chr3_3:55108400-55108419 | None:intergenic | 25.0% |
| ! | TAATACCTTCTTGATATTCT+AGG | - | chr3_3:55108401-55108420 | None:intergenic | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | - | chr3_3:55108428-55108447 | None:intergenic | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | - | chr3_3:55108453-55108472 | None:intergenic | 25.0% |
| ! | ATTGATTATTGAAATCTGTC+TGG | + | chr3_3:55108577-55108596 | Msa0458910:intron | 25.0% |
| ! | CTACAATTTGTGAAAATGTA+CGG | - | chr3_3:55108740-55108759 | None:intergenic | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | + | chr3_3:55107226-55107245 | Msa0458910:CDS | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | - | chr3_3:55107593-55107612 | None:intergenic | 25.0% |
| !! | GATTTGAAATATCAATACCA+TGG | + | chr3_3:55108008-55108027 | Msa0458910:intron | 25.0% |
| ! | AAAAAGTTCATTTGGTACAT+AGG | - | chr3_3:55108146-55108165 | None:intergenic | 25.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | - | chr3_3:55108296-55108315 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTATCTGACA+AGG | + | chr3_3:55108306-55108325 | Msa0458910:intron | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | - | chr3_3:55108348-55108367 | None:intergenic | 25.0% |
| ! | AAAGTGACATATAATATGAG+AGG | - | chr3_3:55108349-55108368 | None:intergenic | 25.0% |
| ! | AATACCTTCTTGATATTCTA+GGG | - | chr3_3:55108400-55108419 | None:intergenic | 25.0% |
| ! | TAATACCTTCTTGATATTCT+AGG | - | chr3_3:55108401-55108420 | None:intergenic | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | - | chr3_3:55108428-55108447 | None:intergenic | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | - | chr3_3:55108453-55108472 | None:intergenic | 25.0% |
| ! | ATTGATTATTGAAATCTGTC+TGG | + | chr3_3:55108577-55108596 | Msa0458910:intron | 25.0% |
| ! | CTACAATTTGTGAAAATGTA+CGG | - | chr3_3:55108740-55108759 | None:intergenic | 25.0% |
| AGAAATACATCTTTGACTGA+AGG | - | chr3_3:55107253-55107272 | None:intergenic | 30.0% | |
| AAAGAATGATACTGATCAGT+TGG | + | chr3_3:55107402-55107421 | Msa0458910:CDS | 30.0% | |
| CTATAACAATTAGGACTACT+GGG | - | chr3_3:55107675-55107694 | None:intergenic | 30.0% | |
| ACTATAACAATTAGGACTAC+TGG | - | chr3_3:55107676-55107695 | None:intergenic | 30.0% | |
| !!! | ATTTTAGCTCTCCAAATTCA+AGG | + | chr3_3:55107767-55107786 | Msa0458910:intron | 30.0% |
| TTGACCCAAAAATCATTAAG+AGG | + | chr3_3:55107851-55107870 | Msa0458910:intron | 30.0% | |
| ATATCCCTAGAATATCAAGA+AGG | + | chr3_3:55108393-55108412 | Msa0458910:intron | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | - | chr3_3:55107253-55107272 | None:intergenic | 30.0% | |
| AAAGAATGATACTGATCAGT+TGG | + | chr3_3:55107402-55107421 | Msa0458910:CDS | 30.0% | |
| CTATAACAATTAGGACTACT+GGG | - | chr3_3:55107675-55107694 | None:intergenic | 30.0% | |
| ACTATAACAATTAGGACTAC+TGG | - | chr3_3:55107676-55107695 | None:intergenic | 30.0% | |
| !!! | ATTTTAGCTCTCCAAATTCA+AGG | + | chr3_3:55107767-55107786 | Msa0458910:intron | 30.0% |
| TTGACCCAAAAATCATTAAG+AGG | + | chr3_3:55107851-55107870 | Msa0458910:intron | 30.0% | |
| ATATCCCTAGAATATCAAGA+AGG | + | chr3_3:55108393-55108412 | Msa0458910:intron | 30.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | - | chr3_3:55107214-55107233 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | + | chr3_3:55107268-55107287 | Msa0458910:CDS | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | + | chr3_3:55107337-55107356 | Msa0458910:CDS | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | + | chr3_3:55107516-55107535 | Msa0458910:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | + | chr3_3:55107532-55107551 | Msa0458910:intron | 35.0% |
| TGAAGAATGCATCGAAACAA+GGG | - | chr3_3:55107620-55107639 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | - | chr3_3:55107621-55107640 | None:intergenic | 35.0% | |
| AAAGTGTACGACCTTGAATT+TGG | - | chr3_3:55107781-55107800 | None:intergenic | 35.0% | |
| !! | TTTTATAGTTTGTGCACTCG+AGG | + | chr3_3:55107912-55107931 | Msa0458910:intron | 35.0% |
| ! | ATCATCAGCTTTAGTGCAAA+TGG | - | chr3_3:55107991-55108010 | None:intergenic | 35.0% |
| ! | GCGTAACTGTTGGTTAATAA+TGG | - | chr3_3:55108120-55108139 | None:intergenic | 35.0% |
| AGTTCATTTGGTACATAGGA+AGG | - | chr3_3:55108142-55108161 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | - | chr3_3:55108344-55108363 | None:intergenic | 35.0% | |
| TTGAAATCTGTCTGGATAGA+TGG | + | chr3_3:55108585-55108604 | Msa0458910:intron | 35.0% | |
| CAATTTGTGAAAATGTACGG+AGG | - | chr3_3:55108737-55108756 | None:intergenic | 35.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | - | chr3_3:55107214-55107233 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | + | chr3_3:55107268-55107287 | Msa0458910:CDS | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | + | chr3_3:55107337-55107356 | Msa0458910:CDS | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | + | chr3_3:55107516-55107535 | Msa0458910:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | + | chr3_3:55107532-55107551 | Msa0458910:intron | 35.0% |
| TGAAGAATGCATCGAAACAA+GGG | - | chr3_3:55107620-55107639 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | - | chr3_3:55107621-55107640 | None:intergenic | 35.0% | |
| AAAGTGTACGACCTTGAATT+TGG | - | chr3_3:55107781-55107800 | None:intergenic | 35.0% | |
| !! | TTTTATAGTTTGTGCACTCG+AGG | + | chr3_3:55107912-55107931 | Msa0458910:intron | 35.0% |
| ! | ATCATCAGCTTTAGTGCAAA+TGG | - | chr3_3:55107991-55108010 | None:intergenic | 35.0% |
| ! | GCGTAACTGTTGGTTAATAA+TGG | - | chr3_3:55108120-55108139 | None:intergenic | 35.0% |
| AGTTCATTTGGTACATAGGA+AGG | - | chr3_3:55108142-55108161 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | - | chr3_3:55108344-55108363 | None:intergenic | 35.0% | |
| TTGAAATCTGTCTGGATAGA+TGG | + | chr3_3:55108585-55108604 | Msa0458910:intron | 35.0% | |
| CAATTTGTGAAAATGTACGG+AGG | - | chr3_3:55108737-55108756 | None:intergenic | 35.0% | |
| ATCCACAGCATATAACACAG+GGG | - | chr3_3:55107191-55107210 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | - | chr3_3:55107192-55107211 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | + | chr3_3:55107310-55107329 | Msa0458910:CDS | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | + | chr3_3:55107340-55107359 | Msa0458910:CDS | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | + | chr3_3:55107423-55107442 | Msa0458910:intron | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | - | chr3_3:55107580-55107599 | None:intergenic | 40.0% |
| GTTTCGATGCATTCTTCATG+TGG | + | chr3_3:55107622-55107641 | Msa0458910:CDS | 40.0% | |
| ! | GCATTCTTCATGTGGTAATG+TGG | + | chr3_3:55107630-55107649 | Msa0458910:CDS | 40.0% |
| CTACTGGGAAAATGAGAAGT+TGG | - | chr3_3:55107660-55107679 | None:intergenic | 40.0% | |
| TCTACACAAAAGTTGAGGGA+AGG | - | chr3_3:55107804-55107823 | None:intergenic | 40.0% | |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | + | chr3_3:55107803-55107822 | Msa0458910:intron | 40.0% |
| AGCCTCTACACAAAAGTTGA+GGG | - | chr3_3:55107808-55107827 | None:intergenic | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | - | chr3_3:55107809-55107828 | None:intergenic | 40.0% | |
| GCTAAATAGCCCACCTAAAT+TGG | + | chr3_3:55108180-55108199 | Msa0458910:intron | 40.0% | |
| CATTTGGTACAAACCCACTA+GGG | - | chr3_3:55108280-55108299 | None:intergenic | 40.0% | |
| TCATTTGGTACAAACCCACT+AGG | - | chr3_3:55108281-55108300 | None:intergenic | 40.0% | |
| ACAATGAACAAGCTTGCAGA+CGG | + | chr3_3:55108655-55108674 | Msa0458910:CDS | 40.0% | |
| CAAATTGTAGTGCGACAAAG+AGG | + | chr3_3:55108750-55108769 | Msa0458910:intron | 40.0% | |
| ATCCACAGCATATAACACAG+GGG | - | chr3_3:55107191-55107210 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | - | chr3_3:55107192-55107211 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | + | chr3_3:55107310-55107329 | Msa0458910:CDS | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | + | chr3_3:55107340-55107359 | Msa0458910:CDS | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | + | chr3_3:55107423-55107442 | Msa0458910:intron | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | - | chr3_3:55107580-55107599 | None:intergenic | 40.0% |
| GTTTCGATGCATTCTTCATG+TGG | + | chr3_3:55107622-55107641 | Msa0458910:CDS | 40.0% | |
| ! | GCATTCTTCATGTGGTAATG+TGG | + | chr3_3:55107630-55107649 | Msa0458910:CDS | 40.0% |
| CTACTGGGAAAATGAGAAGT+TGG | - | chr3_3:55107660-55107679 | None:intergenic | 40.0% | |
| TCTACACAAAAGTTGAGGGA+AGG | - | chr3_3:55107804-55107823 | None:intergenic | 40.0% | |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | + | chr3_3:55107803-55107822 | Msa0458910:intron | 40.0% |
| AGCCTCTACACAAAAGTTGA+GGG | - | chr3_3:55107808-55107827 | None:intergenic | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | - | chr3_3:55107809-55107828 | None:intergenic | 40.0% | |
| GCTAAATAGCCCACCTAAAT+TGG | + | chr3_3:55108180-55108199 | Msa0458910:intron | 40.0% | |
| CATTTGGTACAAACCCACTA+GGG | - | chr3_3:55108280-55108299 | None:intergenic | 40.0% | |
| TCATTTGGTACAAACCCACT+AGG | - | chr3_3:55108281-55108300 | None:intergenic | 40.0% | |
| ACAATGAACAAGCTTGCAGA+CGG | + | chr3_3:55108655-55108674 | Msa0458910:CDS | 40.0% | |
| CAAATTGTAGTGCGACAAAG+AGG | + | chr3_3:55108750-55108769 | Msa0458910:intron | 40.0% | |
| TACCCCTGTGTTATATGCTG+TGG | + | chr3_3:55107186-55107205 | Msa0458910:CDS | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | - | chr3_3:55107193-55107212 | None:intergenic | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | + | chr3_3:55107284-55107303 | Msa0458910:CDS | 45.0% | |
| ! | ACATAGGAAGGCGTAACTGT+TGG | - | chr3_3:55108130-55108149 | None:intergenic | 45.0% |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | - | chr3_3:55108196-55108215 | None:intergenic | 45.0% |
| ACCACTGCTTCGATGATTTG+CGG | - | chr3_3:55108630-55108649 | None:intergenic | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | - | chr3_3:55108656-55108675 | None:intergenic | 45.0% |
| TACCCCTGTGTTATATGCTG+TGG | + | chr3_3:55107186-55107205 | Msa0458910:CDS | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | - | chr3_3:55107193-55107212 | None:intergenic | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | + | chr3_3:55107284-55107303 | Msa0458910:CDS | 45.0% | |
| ! | ACATAGGAAGGCGTAACTGT+TGG | - | chr3_3:55108130-55108149 | None:intergenic | 45.0% |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | - | chr3_3:55108196-55108215 | None:intergenic | 45.0% |
| ACCACTGCTTCGATGATTTG+CGG | - | chr3_3:55108630-55108649 | None:intergenic | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | - | chr3_3:55108656-55108675 | None:intergenic | 45.0% |
| GGCATCAATGAAGAGCGGTT+AGG | + | chr3_3:55107289-55107308 | Msa0458910:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | + | chr3_3:55107352-55107371 | Msa0458910:CDS | 50.0% |
| TAGCCCACCTAAATTGGCAC+CGG | + | chr3_3:55108186-55108205 | Msa0458910:intron | 50.0% | |
| ! | TCTCCGGTGCCAATTTAGGT+GGG | - | chr3_3:55108192-55108211 | None:intergenic | 50.0% |
| GTCTCAGGTTCGATTCTCTC+CGG | - | chr3_3:55108208-55108227 | None:intergenic | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | - | chr3_3:55108249-55108268 | None:intergenic | 50.0% |
| TGGTACAAACCCACTAGGGT+TGG | - | chr3_3:55108276-55108295 | None:intergenic | 50.0% | |
| ACCGCAAATCATCGAAGCAG+TGG | + | chr3_3:55108626-55108645 | Msa0458910:CDS | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | + | chr3_3:55108760-55108779 | Msa0458910:CDS | 50.0% | |
| AAGAGGACGAAAGAGGACCA+TGG | + | chr3_3:55108767-55108786 | Msa0458910:CDS | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | + | chr3_3:55107289-55107308 | Msa0458910:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | + | chr3_3:55107352-55107371 | Msa0458910:CDS | 50.0% |
| TAGCCCACCTAAATTGGCAC+CGG | + | chr3_3:55108186-55108205 | Msa0458910:intron | 50.0% | |
| ! | TCTCCGGTGCCAATTTAGGT+GGG | - | chr3_3:55108192-55108211 | None:intergenic | 50.0% |
| GTCTCAGGTTCGATTCTCTC+CGG | - | chr3_3:55108208-55108227 | None:intergenic | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | - | chr3_3:55108249-55108268 | None:intergenic | 50.0% |
| TGGTACAAACCCACTAGGGT+TGG | - | chr3_3:55108276-55108295 | None:intergenic | 50.0% | |
| ACCGCAAATCATCGAAGCAG+TGG | + | chr3_3:55108626-55108645 | Msa0458910:CDS | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | + | chr3_3:55108760-55108779 | Msa0458910:CDS | 50.0% | |
| AAGAGGACGAAAGAGGACCA+TGG | + | chr3_3:55108767-55108786 | Msa0458910:CDS | 50.0% | |
| ACAACCAAGGCAAGGCGACT+TGG | + | chr3_3:55107157-55107176 | Msa0458910:CDS | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | + | chr3_3:55107158-55107177 | Msa0458910:CDS | 55.0% | |
| AACCAAGGCAAGGCGACTTG+GGG | + | chr3_3:55107159-55107178 | Msa0458910:CDS | 55.0% | |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | - | chr3_3:55108193-55108212 | None:intergenic | 55.0% |
| TCGAACCTGAGACCTTGCAG+AGG | + | chr3_3:55108215-55108234 | Msa0458910:intron | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | - | chr3_3:55108250-55108269 | None:intergenic | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | + | chr3_3:55108250-55108269 | Msa0458910:intron | 55.0% | |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | chr3_3:55108256-55108275 | None:intergenic | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | chr3_3:55108257-55108276 | None:intergenic | 55.0% |
| !! | TAGGGTTGGCCTGGTGGTAT+TGG | - | chr3_3:55108262-55108281 | None:intergenic | 55.0% |
| GGACGAAAGAGGACCATGGT+TGG | + | chr3_3:55108771-55108790 | Msa0458910:CDS | 55.0% | |
| ACAACCAAGGCAAGGCGACT+TGG | + | chr3_3:55107157-55107176 | Msa0458910:CDS | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | + | chr3_3:55107158-55107177 | Msa0458910:CDS | 55.0% | |
| AACCAAGGCAAGGCGACTTG+GGG | + | chr3_3:55107159-55107178 | Msa0458910:CDS | 55.0% | |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | - | chr3_3:55108193-55108212 | None:intergenic | 55.0% |
| TCGAACCTGAGACCTTGCAG+AGG | + | chr3_3:55108215-55108234 | Msa0458910:intron | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | - | chr3_3:55108250-55108269 | None:intergenic | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | + | chr3_3:55108250-55108269 | Msa0458910:intron | 55.0% | |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | chr3_3:55108256-55108275 | None:intergenic | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | chr3_3:55108257-55108276 | None:intergenic | 55.0% |
| !! | TAGGGTTGGCCTGGTGGTAT+TGG | - | chr3_3:55108262-55108281 | None:intergenic | 55.0% |
| GGACGAAAGAGGACCATGGT+TGG | + | chr3_3:55108771-55108790 | Msa0458910:CDS | 55.0% | |
| CGAGGTGCACAACCAAGGCA+AGG | + | chr3_3:55107149-55107168 | Msa0458910:CDS | 60.0% | |
| AACCCCAAGTCGCCTTGCCT+TGG | - | chr3_3:55107164-55107183 | None:intergenic | 60.0% | |
| GTGCTCCTCTGCAAGGTCTC+AGG | - | chr3_3:55108223-55108242 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTGCTCCTCTGCA+AGG | - | chr3_3:55108230-55108249 | None:intergenic | 60.0% |
| TACCACCAGGCCAACCCTAG+TGG | + | chr3_3:55108263-55108282 | Msa0458910:intron | 60.0% | |
| ACCACCAGGCCAACCCTAGT+GGG | + | chr3_3:55108264-55108283 | Msa0458910:intron | 60.0% | |
| !! | CAAACCCACTAGGGTTGGCC+TGG | - | chr3_3:55108271-55108290 | None:intergenic | 60.0% |
| CGAGGTGCACAACCAAGGCA+AGG | + | chr3_3:55107149-55107168 | Msa0458910:CDS | 60.0% | |
| AACCCCAAGTCGCCTTGCCT+TGG | - | chr3_3:55107164-55107183 | None:intergenic | 60.0% | |
| GTGCTCCTCTGCAAGGTCTC+AGG | - | chr3_3:55108223-55108242 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTGCTCCTCTGCA+AGG | - | chr3_3:55108230-55108249 | None:intergenic | 60.0% |
| TACCACCAGGCCAACCCTAG+TGG | + | chr3_3:55108263-55108282 | Msa0458910:intron | 60.0% | |
| ACCACCAGGCCAACCCTAGT+GGG | + | chr3_3:55108264-55108283 | Msa0458910:intron | 60.0% | |
| !! | CAAACCCACTAGGGTTGGCC+TGG | - | chr3_3:55108271-55108290 | None:intergenic | 60.0% |
| !! | ACCCACTAGGGTTGGCCTGG+TGG | - | chr3_3:55108268-55108287 | None:intergenic | 65.0% |
| !! | ACCCACTAGGGTTGGCCTGG+TGG | - | chr3_3:55108268-55108287 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55107145 | 55108797 | 55107145 | ID=Msa0458910;Name=Msa0458910 |
| chr3_3 | mRNA | 55107145 | 55108797 | 55107145 | ID=Msa0458910-mRNA-1;Parent=Msa0458910;Name=Msa0458910-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|4|0|167 |
| chr3_3 | exon | 55107145 | 55107423 | 55107145 | ID=Msa0458910-mRNA-1:exon:10898;Parent=Msa0458910-mRNA-1 |
| chr3_3 | exon | 55107538 | 55107651 | 55107538 | ID=Msa0458910-mRNA-1:exon:10899;Parent=Msa0458910-mRNA-1 |
| chr3_3 | exon | 55108604 | 55108676 | 55108604 | ID=Msa0458910-mRNA-1:exon:10900;Parent=Msa0458910-mRNA-1 |
| chr3_3 | exon | 55108760 | 55108797 | 55108760 | ID=Msa0458910-mRNA-1:exon:10901;Parent=Msa0458910-mRNA-1 |
| chr3_3 | CDS | 55107145 | 55107423 | 55107145 | ID=Msa0458910-mRNA-1:cds;Parent=Msa0458910-mRNA-1 |
| chr3_3 | CDS | 55107538 | 55107651 | 55107538 | ID=Msa0458910-mRNA-1:cds;Parent=Msa0458910-mRNA-1 |
| chr3_3 | CDS | 55108604 | 55108676 | 55108604 | ID=Msa0458910-mRNA-1:cds;Parent=Msa0458910-mRNA-1 |
| chr3_3 | CDS | 55108760 | 55108797 | 55108760 | ID=Msa0458910-mRNA-1:cds;Parent=Msa0458910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
