AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462970 MtrunA17_Chr7g0217721 63.743 171 12 2 1 121 1 171 1.11e-65 206
Msa0462970 MtrunA17_Chr7g0217711 59.887 177 27 2 1 133 1 177 3.01e-63 194
Msa0462970 MtrunA17_Chr3g0113051 98.551 69 1 0 122 190 123 191 6.20e-42 140
Msa0462970 MtrunA17_Chr4g0060931 52.817 142 28 2 13 116 11 151 7.44e-41 142
Msa0462970 MtrunA17_Chr6g0453451 50.685 146 33 2 14 121 15 159 2.24e-40 140
Msa0462970 MtrunA17_Chr3g0091921 49.333 150 37 2 5 116 2 150 1.86e-37 132
Msa0462970 MtrunA17_Chr6g0461661 49.630 135 28 2 14 108 13 147 4.05e-36 130
Msa0462970 MtrunA17_Chr3g0113041 85.075 67 10 0 1 67 1 67 1.74e-35 120
Msa0462970 MtrunA17_Chr3g0113011 75.342 73 18 0 1 73 1 73 3.19e-35 119
Msa0462970 MtrunA17_Chr6g0484441 49.206 126 26 1 19 106 5 130 1.09e-34 125
Msa0462970 MtrunA17_Chr3g0113031 75.309 81 17 2 62 139 21 101 3.20e-34 123
Msa0462970 MtrunA17_Chr2g0316971 50.000 130 25 2 19 108 23 152 8.02e-34 124
Msa0462970 MtrunA17_Chr7g0253011 45.946 148 37 4 11 116 9 155 3.11e-32 120
Msa0462970 MtrunA17_Chr1g0147421 46.479 142 32 4 9 106 14 155 1.72e-31 118
Msa0462970 MtrunA17_Chr3g0113001 88.333 60 7 0 62 121 46 105 3.72e-31 115
Msa0462970 MtrunA17_Chr3g0139331 44.531 128 31 2 19 106 11 138 2.17e-29 112
Msa0462970 MtrunA17_Chr3g0144271 44.928 138 35 3 19 115 23 160 1.04e-28 111
Msa0462970 MtrunA17_Chr2g0312321 41.667 132 35 3 16 108 8 136 4.58e-27 105
Msa0462970 MtrunA17_Chr4g0056541 39.695 131 38 1 20 109 8 138 6.04e-25 100
Msa0462970 MtrunA17_Chr8g0346001 38.194 144 48 1 14 116 10 153 7.57e-25 101
Msa0462970 MtrunA17_Chr2g0309891 40.769 130 37 1 17 106 4 133 7.61e-25 100
Msa0462970 MtrunA17_Chr5g0428991 42.188 128 34 1 18 105 24 151 1.23e-24 101
Msa0462970 MtrunA17_Chr3g0128151 42.520 127 33 1 19 105 22 148 1.46e-24 101
Msa0462970 MtrunA17_Chr4g0018391 39.844 128 36 1 20 106 8 135 2.20e-24 99.0
Msa0462970 MtrunA17_Chr5g0433781 40.000 130 38 1 17 106 4 133 3.24e-24 100
Msa0462970 MtrunA17_Chr7g0214071 40.152 132 42 2 13 107 9 140 4.60e-24 96.3
Msa0462970 MtrunA17_Chr3g0109821 39.231 130 39 1 17 106 4 133 5.76e-24 99.8
Msa0462970 MtrunA17_Chr8g0372121 39.062 128 37 1 20 106 7 134 5.86e-24 97.1
Msa0462970 MtrunA17_Chr6g0481091 40.000 130 38 1 17 106 4 133 6.56e-24 95.5
Msa0462970 MtrunA17_Chr5g0398971 39.394 132 38 2 20 109 8 139 7.79e-24 97.4
Msa0462970 MtrunA17_Chr4g0017921 42.969 128 32 1 20 106 9 136 1.57e-23 96.7
Msa0462970 MtrunA17_Chr5g0405211 37.405 131 41 1 20 109 9 139 1.77e-23 96.7
Msa0462970 MtrunA17_Chr2g0309331 39.860 143 38 4 16 113 7 146 1.81e-23 96.3
Msa0462970 MtrunA17_Chr3g0128111 41.129 124 33 1 22 105 45 168 1.23e-22 92.4
Msa0462970 MtrunA17_Chr8g0359921 38.298 141 48 2 16 118 11 150 1.29e-22 94.0
Msa0462970 MtrunA17_Chr1g0200561 36.620 142 41 2 20 120 20 153 1.34e-22 94.0
Msa0462970 MtrunA17_Chr8g0386501 65.574 61 21 0 122 182 115 175 2.51e-22 90.9
Msa0462970 MtrunA17_Chr5g0417791 39.695 131 41 1 17 109 1 131 2.81e-22 91.7
Msa0462970 MtrunA17_Chr1g0183741 35.156 128 43 2 19 106 10 137 8.82e-22 90.5
Msa0462970 MtrunA17_Chr3g0124761 37.209 129 44 2 16 107 4 132 1.14e-21 90.5
Msa0462970 MtrunA17_Chr8g0349391 52.000 75 36 0 122 196 117 191 1.15e-21 89.0
Msa0462970 MtrunA17_Chr8g0349391 44.444 72 40 0 121 192 22 93 1.68e-12 64.3
Msa0462970 MtrunA17_Chr7g0247111 44.660 103 47 3 90 182 77 179 1.16e-21 89.0
Msa0462970 MtrunA17_Chr4g0042561 39.231 130 41 1 18 109 8 137 1.38e-21 90.1
Msa0462970 MtrunA17_Chr2g0318081 38.760 129 41 1 16 106 13 141 1.86e-21 90.9
Msa0462970 MtrunA17_Chr7g0263931 36.735 147 53 2 11 117 3 149 4.64e-21 89.7
Msa0462970 MtrunA17_Chr1g0197361 37.594 133 42 2 22 113 11 143 5.55e-21 90.9
Msa0462970 MtrunA17_Chr2g0318101 37.037 135 45 2 15 109 11 145 1.61e-20 88.6
Msa0462970 MtrunA17_Chr2g0311651 32.447 188 62 6 1 138 1 173 3.67e-20 87.0
Msa0462970 MtrunA17_Chr2g0311661 34.356 163 60 5 1 117 1 162 4.15e-20 86.3
Msa0462970 MtrunA17_Chr8g0384721 37.162 148 50 3 17 122 5 151 6.11e-20 85.9
Msa0462970 MtrunA17_Chr4g0047841 36.496 137 43 3 19 115 15 147 6.91e-20 86.7
Msa0462970 MtrunA17_Chr3g0130731 37.692 130 42 2 16 107 4 132 1.60e-19 84.7
Msa0462970 MtrunA17_Chr8g0364791 34.532 139 51 1 18 116 5 143 2.83e-19 85.5
Msa0462970 MtrunA17_Chr8g0361731 37.121 132 42 3 15 106 11 141 8.75e-19 84.0
Msa0462970 MtrunA17_Chr8g0385991 31.973 147 62 2 12 120 7 153 1.15e-18 81.3
Msa0462970 MtrunA17_Chr1g0197351 38.211 123 36 1 22 104 45 167 1.53e-18 83.6
Msa0462970 MtrunA17_Chr3g0130101 32.450 151 61 2 12 122 1 150 1.73e-18 82.8
Msa0462970 MtrunA17_Chr5g0417001 37.600 125 38 2 22 106 17 141 6.37e-18 81.6
Msa0462970 MtrunA17_Chr8g0384201 33.824 136 50 1 18 113 5 140 9.75e-18 81.3
Msa0462970 MtrunA17_Chr3g0092671 35.338 133 45 2 22 113 8 140 3.38e-17 79.7
Msa0462970 MtrunA17_Chr1g0201021 35.766 137 43 2 22 118 22 153 1.12e-16 78.2
Msa0462970 MtrunA17_Chr1g0152431 64.151 53 19 0 122 174 123 175 7.90e-16 73.2
Msa0462970 MtrunA17_Chr4g0059371 52.727 55 26 0 122 176 123 177 9.31e-16 72.4
Msa0462970 MtrunA17_Chr4g0038751 32.450 151 57 4 1 110 1 147 4.34e-13 67.0
Msa0462970 MtrunA17_Chr2g0321741 33.019 106 32 1 38 104 11 116 3.16e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462970 AT5G07680.1 50.000 144 33 2 11 116 9 151 9.12e-39 137
Msa0462970 AT3G29035.1 50.000 144 34 1 3 108 8 151 2.76e-38 135
Msa0462970 AT5G61430.1 49.296 142 33 2 13 116 10 150 3.73e-38 135
Msa0462970 AT5G07680.2 50.725 138 29 2 17 116 1 137 3.88e-37 132
Msa0462970 AT5G39610.1 50.000 134 29 1 13 108 14 147 2.67e-35 127
Msa0462970 AT3G55770.3 91.935 62 5 0 122 183 121 182 5.77e-35 123
Msa0462970 AT3G55770.3 46.377 69 36 1 121 189 22 89 1.84e-12 64.3
Msa0462970 AT3G55770.5 91.935 62 5 0 122 183 121 182 5.77e-35 123
Msa0462970 AT3G55770.5 46.377 69 36 1 121 189 22 89 1.84e-12 64.3
Msa0462970 AT3G55770.2 91.935 62 5 0 122 183 121 182 5.77e-35 123
Msa0462970 AT3G55770.2 46.377 69 36 1 121 189 22 89 1.84e-12 64.3
Msa0462970 AT3G55770.1 91.935 62 5 0 122 183 121 182 5.77e-35 123
Msa0462970 AT3G55770.1 46.377 69 36 1 121 189 22 89 1.84e-12 64.3
Msa0462970 AT5G18270.2 49.624 133 28 2 15 108 17 149 1.37e-34 126
Msa0462970 AT5G18270.1 49.624 133 28 2 15 108 17 149 1.46e-34 126
Msa0462970 AT3G04060.1 47.651 149 38 3 7 116 8 155 1.48e-34 126
Msa0462970 AT2G39900.1 93.443 61 4 0 122 182 122 182 2.20e-34 122
Msa0462970 AT2G39900.1 39.130 69 42 0 121 189 22 90 8.03e-11 59.7
Msa0462970 AT3G55770.7 91.935 62 5 0 122 183 155 216 2.96e-34 122
Msa0462970 AT3G55770.7 46.377 69 36 1 121 189 22 89 3.09e-12 64.3
Msa0462970 AT3G18400.1 48.413 126 27 1 19 106 5 130 2.99e-34 124
Msa0462970 AT5G53950.1 49.640 139 29 3 19 117 17 154 1.93e-33 124
Msa0462970 AT2G24430.2 46.377 138 34 2 9 106 6 143 1.25e-32 120
Msa0462970 AT2G24430.1 46.377 138 34 2 9 106 6 143 1.25e-32 120
Msa0462970 AT3G15170.1 45.270 148 39 4 11 118 13 158 7.52e-31 115
Msa0462970 AT1G76420.1 42.958 142 41 2 13 114 16 157 9.42e-30 113
Msa0462970 AT2G46770.1 35.897 156 59 1 14 128 11 166 4.45e-27 106
Msa0462970 AT1G56010.2 35.135 148 57 2 1 109 1 148 1.71e-26 104
Msa0462970 AT3G12977.1 35.821 134 48 1 16 111 15 148 3.44e-26 102
Msa0462970 AT1G33060.1 40.602 133 39 1 19 111 24 156 4.89e-25 103
Msa0462970 AT1G33060.2 40.602 133 39 1 19 111 24 156 5.00e-25 103
Msa0462970 AT3G17730.1 40.769 130 37 1 17 106 4 133 7.59e-25 98.6
Msa0462970 AT2G33480.2 41.270 126 39 1 17 107 13 138 1.09e-24 98.6
Msa0462970 AT2G33480.1 41.270 126 39 1 17 107 13 138 1.15e-24 98.6
Msa0462970 AT4G10350.1 40.278 144 45 1 20 122 10 153 2.37e-24 99.0
Msa0462970 AT3G10500.1 38.298 141 47 1 22 122 12 152 2.40e-24 100
Msa0462970 AT1G12260.2 39.844 128 36 1 20 106 8 135 4.58e-24 98.2
Msa0462970 AT5G04410.1 39.007 141 46 1 22 122 12 152 4.64e-24 100
Msa0462970 AT4G35580.1 40.945 127 35 1 19 105 9 135 4.85e-24 99.8
Msa0462970 AT4G35580.3 40.945 127 35 1 19 105 9 135 5.24e-24 99.8
Msa0462970 AT4G35580.2 40.945 127 35 1 19 105 9 135 5.68e-24 99.8
Msa0462970 AT1G12260.1 39.844 128 36 1 20 106 8 135 6.13e-24 98.6
Msa0462970 AT4G36160.1 38.168 131 40 1 20 109 11 141 7.13e-24 98.2
Msa0462970 AT4G36160.3 38.168 131 40 1 20 109 11 141 7.13e-24 98.2
Msa0462970 AT4G36160.2 38.168 131 40 1 20 109 15 145 7.67e-24 98.2
Msa0462970 AT5G13180.1 37.879 132 45 2 12 106 7 138 9.70e-24 95.9
Msa0462970 AT5G17260.1 43.077 130 34 3 17 106 4 133 2.23e-23 97.8
Msa0462970 AT1G65910.1 37.692 130 41 1 17 106 4 133 2.24e-23 98.2
Msa0462970 AT3G03200.1 40.769 130 37 1 17 106 4 133 2.97e-23 97.4
Msa0462970 AT1G71930.2 34.815 135 47 1 19 112 9 143 4.32e-23 95.5
Msa0462970 AT1G71930.1 34.815 135 47 1 19 112 9 143 4.32e-23 95.5
Msa0462970 AT1G33280.1 41.406 128 34 1 20 106 9 136 4.43e-23 95.1
Msa0462970 AT1G62700.1 38.462 130 39 1 18 106 6 135 7.10e-23 95.9
Msa0462970 AT1G62700.2 38.462 130 39 1 18 106 6 135 7.10e-23 95.9
Msa0462970 AT5G62380.2 38.760 129 38 1 19 106 7 135 7.95e-23 95.1
Msa0462970 AT5G62380.1 38.760 129 38 1 19 106 7 135 7.95e-23 95.1
Msa0462970 AT3G61910.1 35.971 139 48 1 14 111 6 144 9.00e-23 94.7
Msa0462970 AT2G18060.3 36.029 136 46 1 15 109 5 140 9.62e-23 95.1
Msa0462970 AT2G18060.1 36.029 136 46 1 15 109 5 140 9.62e-23 95.1
Msa0462970 AT4G27410.2 37.984 129 42 1 16 106 11 139 2.50e-22 92.8
Msa0462970 AT3G49530.1 35.294 153 54 3 4 115 2 150 4.16e-22 94.4
Msa0462970 AT1G32770.1 37.857 140 46 1 14 112 11 150 4.23e-22 93.2
Msa0462970 AT2G27300.1 40.769 130 35 4 19 108 15 142 4.37e-22 92.8
Msa0462970 AT3G49530.2 35.294 153 54 3 4 115 2 150 4.50e-22 93.6
Msa0462970 AT3G10490.1 41.600 125 33 1 22 106 30 154 5.35e-22 90.9
Msa0462970 AT1G01720.1 37.405 131 45 2 14 107 2 132 8.44e-22 91.3
Msa0462970 AT3G61230.1 55.385 65 29 0 122 186 120 184 1.46e-21 89.0
Msa0462970 AT3G61230.1 44.828 58 32 0 121 178 23 80 1.02e-11 62.4
Msa0462970 AT5G66300.1 36.508 126 39 1 20 104 13 138 1.70e-21 90.5
Msa0462970 AT5G61430.2 70.909 55 15 1 62 116 34 87 2.26e-21 89.7
Msa0462970 AT3G10480.1 41.600 125 33 1 22 106 30 154 2.39e-21 92.0
Msa0462970 AT3G10480.2 41.600 125 33 1 22 106 30 154 2.52e-21 91.7
Msa0462970 AT2G45800.2 58.462 65 27 0 122 186 88 152 2.55e-21 88.2
Msa0462970 AT1G26870.1 38.621 145 46 4 1 105 1 142 2.76e-21 91.7
Msa0462970 AT3G10490.2 41.600 125 33 1 22 106 30 154 2.93e-21 91.7
Msa0462970 AT2G45800.1 58.462 65 27 0 122 186 119 183 4.16e-21 88.2
Msa0462970 AT2G45800.1 50.000 52 26 0 121 172 22 73 5.92e-12 63.5
Msa0462970 AT5G08790.1 40.000 130 39 2 16 107 4 132 5.00e-21 89.0
Msa0462970 AT1G77450.1 37.984 129 41 2 17 107 8 135 5.51e-21 88.6
Msa0462970 AT1G61110.1 36.054 147 55 2 5 112 2 148 7.86e-21 89.4
Msa0462970 AT3G15500.1 37.209 129 43 1 16 106 11 139 1.36e-20 88.6
Msa0462970 AT1G54330.1 39.695 131 39 1 17 107 4 134 1.56e-20 88.2
Msa0462970 AT5G24590.2 37.313 134 43 2 19 111 13 146 1.73e-20 89.4
Msa0462970 AT1G52890.1 37.984 129 42 1 16 106 11 139 2.30e-20 87.8
Msa0462970 AT5G46590.1 33.333 147 57 2 19 124 6 152 4.46e-20 86.7
Msa0462970 AT5G46590.2 35.294 136 47 2 19 113 6 141 7.19e-20 85.9
Msa0462970 AT1G01780.1 48.438 64 33 0 122 185 117 180 1.92e-19 83.2
Msa0462970 AT1G01780.1 48.077 52 27 0 121 172 22 73 1.12e-11 62.4
Msa0462970 AT5G63790.2 39.259 135 42 3 11 107 53 185 2.14e-19 85.1
Msa0462970 AT5G63790.1 39.259 135 42 3 11 107 43 175 2.18e-19 85.1
Msa0462970 AT1G79580.3 36.242 149 50 3 16 122 14 159 3.10e-19 85.5
Msa0462970 AT1G79580.5 36.242 149 50 3 16 122 14 159 3.10e-19 85.5
Msa0462970 AT1G79580.4 36.242 149 50 3 16 122 14 159 3.10e-19 85.5
Msa0462970 AT1G79580.2 36.242 149 50 3 16 122 14 159 3.10e-19 85.5
Msa0462970 AT1G79580.1 36.242 149 50 3 16 122 14 159 3.10e-19 85.5
Msa0462970 AT1G69490.1 38.095 126 40 1 19 106 9 134 6.91e-19 83.2
Msa0462970 AT5G22290.1 34.328 134 48 2 19 113 22 154 1.82e-18 82.8
Msa0462970 AT4G17980.1 36.154 130 41 2 19 106 6 135 2.07e-18 81.6
Msa0462970 AT3G44290.2 35.606 132 45 2 19 111 15 145 3.84e-18 80.5
Msa0462970 AT4G28530.1 32.414 145 42 4 18 106 9 153 4.21e-18 82.0
Msa0462970 AT4G17980.2 36.154 130 41 2 19 106 6 135 4.21e-18 81.3
Msa0462970 AT5G39820.1 35.338 133 46 2 22 114 23 155 2.79e-17 79.7
Msa0462970 AT1G34190.1 36.296 135 45 2 18 111 14 148 1.03e-16 79.0
Msa0462970 AT5G09330.5 31.915 141 56 1 16 116 3 143 1.05e-16 78.6
Msa0462970 AT5G09330.2 31.915 141 56 1 16 116 3 143 1.05e-16 78.6
Msa0462970 AT5G09330.4 31.915 141 56 1 16 116 3 143 1.05e-16 78.6
Msa0462970 AT5G09330.3 31.915 141 56 1 16 116 3 143 1.05e-16 78.6
Msa0462970 AT5G09330.1 31.915 141 56 1 16 116 3 143 1.05e-16 78.6
Msa0462970 AT2G43000.1 30.464 151 66 2 1 113 1 150 2.19e-16 76.3
Msa0462970 AT1G10200.2 64.151 53 19 0 122 174 81 133 2.24e-16 73.6
Msa0462970 AT1G10200.1 64.151 53 19 0 122 174 123 175 5.45e-16 73.6
Msa0462970 AT3G12977.2 58.000 50 21 0 62 111 46 95 8.71e-16 73.9
Msa0462970 AT1G34180.1 36.154 130 42 2 18 106 14 143 9.64e-16 75.9
Msa0462970 AT1G34180.3 36.154 130 42 2 18 106 14 143 1.43e-15 75.5
Msa0462970 AT1G32510.1 32.432 148 53 2 20 120 7 154 1.52e-15 74.3
Msa0462970 AT1G56010.1 60.417 48 19 0 62 109 34 81 2.00e-15 73.6
Msa0462970 AT2G18060.2 58.333 48 20 0 62 109 5 52 3.74e-15 73.2
Msa0462970 AT2G17040.1 32.558 129 46 2 22 109 9 137 1.41e-14 71.2
Msa0462970 AT3G10490.4 66.667 45 15 0 62 106 10 54 1.86e-14 71.6
Msa0462970 AT3G10490.3 66.667 45 15 0 62 106 10 54 1.86e-14 71.6
Msa0462970 AT4G27410.3 32.192 146 44 3 16 106 11 156 3.32e-14 70.9
Msa0462970 AT3G10480.3 66.667 45 15 0 62 106 143 187 3.49e-14 71.2
Msa0462970 AT1G34180.2 33.099 142 42 2 18 106 14 155 3.72e-14 71.2
Msa0462970 AT1G34180.4 33.099 142 42 2 18 106 14 155 5.93e-14 70.5
Msa0462970 AT4G10350.2 54.098 61 28 0 62 122 46 106 8.12e-14 69.3
Msa0462970 AT1G32870.3 36.585 123 40 1 22 106 49 171 1.13e-13 70.1
Msa0462970 AT1G32870.2 36.585 123 40 1 22 106 13 135 1.20e-13 69.7
Msa0462970 AT1G32870.1 36.585 123 40 1 22 106 13 135 1.22e-13 69.7
Msa0462970 AT3G55770.6 46.377 69 36 1 121 189 22 89 1.59e-13 65.9
Msa0462970 AT2G33480.3 60.870 46 18 0 62 107 36 81 1.65e-13 67.4
Msa0462970 AT3G55770.4 46.377 69 36 1 121 189 22 89 3.23e-13 65.1
Msa0462970 AT5G22290.2 48.077 52 27 0 62 113 4 55 2.47e-12 64.7

Find 42 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGGGAAATGCATTAAT+TGG 0.121823 3_3:-62226284 Msa0462970:CDS
GGCACCAACATTCGAGATTC+TGG 0.270739 3_3:+62219440 None:intergenic
GCATAATTTGATGGAGTTAT+AGG 0.293254 3_3:+62219578 None:intergenic
AAATGAAAAGGTCAAATTTC+CGG 0.296027 3_3:-62227423 Msa0462970:CDS
TGAACACTTGAAACATGATT+TGG 0.352807 3_3:+62219613 None:intergenic
TCAAATTATGCAGCCCTTGA+AGG 0.395217 3_3:-62219566 Msa0462970:CDS
TGCAGTACAAAATGCCTTCA+AGG 0.396606 3_3:+62219552 None:intergenic
TCAAGGGCTGCATAATTTGA+TGG 0.397175 3_3:+62219569 None:intergenic
TCAAGGGAAATGCATTAATT+GGG 0.420828 3_3:-62226283 Msa0462970:CDS
GAACAAAGGCAATAATTAGA+AGG 0.437664 3_3:+62219419 None:intergenic
GAACACTTGAAACATGATTT+GGG 0.456736 3_3:+62219614 None:intergenic
GTATTCATGCATGACCCAAT+TGG 0.462426 3_3:+62226208 None:intergenic
AAATCAATACCTTGTCAAGA+AGG 0.466786 3_3:-62227363 Msa0462970:CDS
TTGATTTATAAGCTCTTCAT+CGG 0.497039 3_3:+62227379 None:intergenic
CAAGCAAGTGTTTGTATGTG+TGG 0.499680 3_3:-62219365 Msa0462970:CDS
TTACCATTCCATGTGTGGAT+AGG 0.526862 3_3:+62226153 None:intergenic
CTTCTTTCAAAACAGAACAA+AGG 0.528589 3_3:+62219405 None:intergenic
GTAGGTAACAGTCGAAAGCC+AGG 0.532163 3_3:-62219642 Msa0462970:intron
TTTATAAGCTCTTCATCGGT+CGG 0.540210 3_3:+62227383 None:intergenic
GAAAAGGTCAAATTTCCGGC+TGG 0.542041 3_3:-62227419 Msa0462970:CDS
ATGCATGAATACCGATTGGC+GGG 0.543086 3_3:-62226197 Msa0462970:CDS
CAACCTATCCACACATGGAA+TGG 0.547037 3_3:-62226156 Msa0462970:intron
CTTGAAACATGATTTGGGAT+AGG 0.554637 3_3:+62219619 None:intergenic
TGTTCCAGAATCTCGAATGT+TGG 0.561625 3_3:-62219444 Msa0462970:CDS
TAATGATGGAACAATTATGA+AGG 0.562471 3_3:+62219332 None:intergenic
CAATATTACCATTCCATGTG+TGG 0.569497 3_3:+62226148 None:intergenic
AGAGTGTGTTACCCGCCAAT+CGG 0.570583 3_3:+62226186 None:intergenic
CATTCGAGATTCTGGAACAG+AGG 0.582700 3_3:+62219448 None:intergenic
AATTCACCTGGCAAATCCCA+TGG 0.596462 3_3:+62227281 None:intergenic
CATGCATGAATACCGATTGG+CGG 0.600090 3_3:-62226198 Msa0462970:CDS
AACATGATTTGGGATAGGCC+TGG 0.600433 3_3:+62219624 None:intergenic
TGTCATCAACCTTCTTGACA+AGG 0.607463 3_3:+62227354 None:intergenic
GGTCATGCATGAATACCGAT+TGG 0.609797 3_3:-62226201 Msa0462970:CDS
GCAGTACAAAATGCCTTCAA+GGG 0.612938 3_3:+62219553 None:intergenic
TGTGAACCATGGGATTTGCC+AGG 0.615720 3_3:-62227287 Msa0462970:intron
TCATGTTTCAAGTGTTCACA+CGG 0.626317 3_3:-62219608 Msa0462970:CDS
GGAGAGAATCGATAACCAGC+CGG 0.632530 3_3:+62227404 None:intergenic
TATGAATAAGTGTGAACCAT+GGG 0.641317 3_3:-62227297 Msa0462970:CDS
GAGCACAACCTATCCACACA+TGG 0.663138 3_3:-62226161 Msa0462970:CDS
ATATGAATAAGTGTGAACCA+TGG 0.681966 3_3:-62227298 Msa0462970:CDS
TGTTTCAAGTGTTCACACGG+AGG 0.708270 3_3:-62219605 Msa0462970:CDS
TACAAAGGAAGAGCGCCGAG+TGG 0.721558 3_3:-62226239 Msa0462970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAAAAAAAAAA+AGG + chr3_3:62221259-62221278 None:intergenic 0.0%
!!! AATTTACTTTATTTAGAAAA+AGG + chr3_3:62220979-62220998 None:intergenic 10.0%
!! AGAAAATAATCAAATATATA+TGG + chr3_3:62222767-62222786 None:intergenic 10.0%
!!! TATATTTGATTATTTTCTTA+AGG - chr3_3:62222769-62222788 Msa0462970:intron 10.0%
!! TTTCTTTATATATATTCTTA+TGG + chr3_3:62223176-62223195 None:intergenic 10.0%
!! TAAAAAAGAAAAAAAATGAA+GGG + chr3_3:62224031-62224050 None:intergenic 10.0%
!!! TAAAAACTAATTTTTATCAA+GGG + chr3_3:62224867-62224886 None:intergenic 10.0%
!!! ATAAAAACTAATTTTTATCA+AGG + chr3_3:62224868-62224887 None:intergenic 10.0%
!!! TAAAAGTTAGTTTTTATTTT+AGG + chr3_3:62225099-62225118 None:intergenic 10.0%
!! AAAATAAAAAAAAAACTCCA+AGG + chr3_3:62219622-62219641 None:intergenic 15.0%
!! TTAAAGACATTAAAAACTAA+AGG - chr3_3:62219684-62219703 Msa0462970:intron 15.0%
!! TAAAGACATTAAAAACTAAA+GGG - chr3_3:62219685-62219704 Msa0462970:intron 15.0%
!!! AATTGTTTTTCTTTCTATTT+TGG + chr3_3:62220012-62220031 None:intergenic 15.0%
!! AAATAGAAAGAAAAACAATT+TGG - chr3_3:62220012-62220031 Msa0462970:intron 15.0%
!!! TAAAGTTTTTGTCAAAATTA+CGG + chr3_3:62220799-62220818 None:intergenic 15.0%
!!! AGTGATTTTGATTTTTTTTT+AGG - chr3_3:62220913-62220932 Msa0462970:intron 15.0%
!!! GTGATTTTGATTTTTTTTTA+GGG - chr3_3:62220914-62220933 Msa0462970:intron 15.0%
!!! TTTTTTTTTTATAGAGTGAA+TGG - chr3_3:62221267-62221286 Msa0462970:intron 15.0%
!!! TTTTTTTTTATAGAGTGAAT+GGG - chr3_3:62221268-62221287 Msa0462970:intron 15.0%
!!! ATGCATTTTTTAACTTTAAA+GGG + chr3_3:62223609-62223628 None:intergenic 15.0%
!!! TGCTTTTATATATTATGAAT+GGG + chr3_3:62223973-62223992 None:intergenic 15.0%
!!! ATGCTTTTATATATTATGAA+TGG + chr3_3:62223974-62223993 None:intergenic 15.0%
!! GTAAAAAAGAAAAAAAATGA+AGG + chr3_3:62224032-62224051 None:intergenic 15.0%
!! TTGTAAAGTTTATATAACAA+AGG - chr3_3:62224730-62224749 Msa0462970:intron 15.0%
!! AAAATTTATATATCAAAGGA+AGG + chr3_3:62225238-62225257 None:intergenic 15.0%
!!! AATTTTAAAATCACAATATG+AGG - chr3_3:62225252-62225271 Msa0462970:intron 15.0%
!!! GTTATTTTCAAATATTTCAA+AGG + chr3_3:62225677-62225696 None:intergenic 15.0%
!!! ATAGAACAAAAACATAATTT+TGG + chr3_3:62226318-62226337 None:intergenic 15.0%
!! TAATTACATATCAACAAAAA+GGG + chr3_3:62226784-62226803 None:intergenic 15.0%
!! TTAATTACATATCAACAAAA+AGG + chr3_3:62226785-62226804 None:intergenic 15.0%
!! GAATGTTTACAATCAAAAAA+TGG - chr3_3:62219360-62219379 Msa0462970:CDS 20.0%
!! TCAAAAAATGGAAAATGAAA+AGG - chr3_3:62219372-62219391 Msa0462970:CDS 20.0%
!! AAAAAAACAATAAATTCACC+TGG + chr3_3:62219541-62219560 None:intergenic 20.0%
!! ATTAGATTATATTAGTAGTC+TGG - chr3_3:62219581-62219600 Msa0462970:CDS 20.0%
!! AAAGACATTAAAAACTAAAG+GGG - chr3_3:62219686-62219705 Msa0462970:intron 20.0%
!!! TTTTAAAGTTATTATGAGTG+CGG - chr3_3:62220285-62220304 Msa0462970:intron 20.0%
!!! ACTTATGCTTTCTTATTTTT+TGG - chr3_3:62220360-62220379 Msa0462970:intron 20.0%
!! TTACAAACAAAATTTCATGT+TGG - chr3_3:62221761-62221780 Msa0462970:intron 20.0%
!!! TGTGGTATACATATTTTATA+AGG - chr3_3:62221819-62221838 Msa0462970:intron 20.0%
!! AACTGAAATTTAGATAAGTT+CGG + chr3_3:62221892-62221911 None:intergenic 20.0%
!! TATATATATTATCAAGTGAG+AGG - chr3_3:62221916-62221935 Msa0462970:intron 20.0%
!!! AACCAATTATCTTTTAATTG+CGG + chr3_3:62222462-62222481 None:intergenic 20.0%
!! CAATTAAAAGATAATTGGTT+GGG - chr3_3:62222462-62222481 Msa0462970:intron 20.0%
!!! TAGTGTTTTAAATAGCTTTT+CGG + chr3_3:62222913-62222932 None:intergenic 20.0%
!!! TATTTAAAACACTACTAAGA+AGG - chr3_3:62222919-62222938 Msa0462970:intron 20.0%
!!! ATTTAAAACACTACTAAGAA+GGG - chr3_3:62222920-62222939 Msa0462970:intron 20.0%
!!! TGATATCATAACCATTTTTA+TGG + chr3_3:62223008-62223027 None:intergenic 20.0%
!!! TGCATTTTTTAACTTTAAAG+GGG + chr3_3:62223608-62223627 None:intergenic 20.0%
!!! CATGCATTTTTTAACTTTAA+AGG + chr3_3:62223610-62223629 None:intergenic 20.0%
!!! CTTTAAAGTTAAAAAATGCA+TGG - chr3_3:62223608-62223627 Msa0462970:intron 20.0%
!! TATATATTATGAATGGGAAT+TGG + chr3_3:62223967-62223986 None:intergenic 20.0%
!! TTTCAATCAAAATATCACAA+GGG + chr3_3:62224215-62224234 None:intergenic 20.0%
!! ATTTCAATCAAAATATCACA+AGG + chr3_3:62224216-62224235 None:intergenic 20.0%
!! CAAATATTCAAAAACATCTT+TGG + chr3_3:62224459-62224478 None:intergenic 20.0%
!! CTGACAAAAAATTAATATGT+TGG + chr3_3:62224510-62224529 None:intergenic 20.0%
!!! CAACATATTAATTTTTTGTC+AGG - chr3_3:62224508-62224527 Msa0462970:intron 20.0%
!! CTTATCATAAAAAATAACCT+TGG + chr3_3:62224681-62224700 None:intergenic 20.0%
!!! CAAGGTTATTTTTTATGATA+AGG - chr3_3:62224679-62224698 Msa0462970:intron 20.0%
!! AAAGTTTATATAACAAAGGA+AGG - chr3_3:62224734-62224753 Msa0462970:intron 20.0%
!! ATAGCACGATAATTTATAAA+CGG - chr3_3:62224982-62225001 Msa0462970:intron 20.0%
!!! GGTGTAATTTTTTTATGATA+AGG + chr3_3:62225293-62225312 None:intergenic 20.0%
!!! ACTATTTCAGCAATTTTTTT+TGG - chr3_3:62225905-62225924 Msa0462970:intron 20.0%
!! TCAGCATAATAAAAAAAACT+TGG + chr3_3:62225977-62225996 None:intergenic 20.0%
!!! AACTAAAAGTACCTTTTAAA+TGG + chr3_3:62226970-62226989 None:intergenic 20.0%
!! AAATGCATAAAATTGAAGAT+TGG + chr3_3:62227023-62227042 None:intergenic 20.0%
!! AGTAATTAGATTTACTCATT+CGG + chr3_3:62227058-62227077 None:intergenic 20.0%
!! ATATATCTTATTCTGAATGT+AGG - chr3_3:62227147-62227166 Msa0462970:intron 20.0%
! AAATGAAAAGGTCAAATTTC+CGG - chr3_3:62219384-62219403 Msa0462970:CDS 25.0%
! TTGATTTATAAGCTCTTCAT+CGG + chr3_3:62219431-62219450 None:intergenic 25.0%
! GAAAGAAAAACAATTTGGAA+TGG - chr3_3:62220017-62220036 Msa0462970:intron 25.0%
! TCTAATGTATGTATGTCTTT+CGG - chr3_3:62220324-62220343 Msa0462970:intron 25.0%
!! AAAGACAAAGAGATTTTCAA+GGG - chr3_3:62220508-62220527 Msa0462970:intron 25.0%
! AATTGGGATGAAAAAAACAT+TGG - chr3_3:62220540-62220559 Msa0462970:intron 25.0%
!!! AAAACATTGGTTTTCTACAA+AGG - chr3_3:62220553-62220572 Msa0462970:intron 25.0%
! TAAGTTTGACAATAATGACA+CGG + chr3_3:62220844-62220863 None:intergenic 25.0%
! AGAGATTCATTAGTATTTGA+TGG + chr3_3:62221380-62221399 None:intergenic 25.0%
! TGATTTCTCTTCAAAACAAA+TGG - chr3_3:62221439-62221458 Msa0462970:intron 25.0%
!! TAAACCAAGAGTTTTCTTTT+GGG - chr3_3:62221612-62221631 Msa0462970:intron 25.0%
! CATTTATCTATTGTGATTTG+TGG - chr3_3:62221801-62221820 Msa0462970:intron 25.0%
!!! TAGATTCATGAATTTGGTTT+TGG + chr3_3:62222321-62222340 None:intergenic 25.0%
!! TTGCTTTAGATTCATGAATT+TGG + chr3_3:62222327-62222346 None:intergenic 25.0%
!!! ACCAATTATCTTTTAATTGC+GGG + chr3_3:62222461-62222480 None:intergenic 25.0%
! GCAATTAAAAGATAATTGGT+TGG - chr3_3:62222461-62222480 Msa0462970:intron 25.0%
! AAGCTAATATGTTTAGATCA+TGG + chr3_3:62222496-62222515 None:intergenic 25.0%
!! ATCTATTATTTTCCCCTTAA+AGG + chr3_3:62222659-62222678 None:intergenic 25.0%
! ATAATAGATGTCTTGTCTTA+AGG - chr3_3:62222670-62222689 Msa0462970:intron 25.0%
! TGAAAATAGATAGCTATCAA+TGG + chr3_3:62222984-62223003 None:intergenic 25.0%
!! TCTATTTTCAGCCATAAAAA+TGG - chr3_3:62222994-62223013 Msa0462970:intron 25.0%
! ATACAACAAAAATCATCAAG+AGG + chr3_3:62223128-62223147 None:intergenic 25.0%
! ATGGAAAAAAAATCATCAAG+AGG + chr3_3:62223157-62223176 None:intergenic 25.0%
! TACAATTAAAACTGCCAAAA+CGG - chr3_3:62223442-62223461 Msa0462970:intron 25.0%
! CACTTGAAGTAAATAATACA+CGG - chr3_3:62223538-62223557 Msa0462970:intron 25.0%
! GAAAATGAATGACATCAAAT+CGG - chr3_3:62223700-62223719 Msa0462970:intron 25.0%
!!! GTTGATTTTAAGAGAAATAG+TGG - chr3_3:62223859-62223878 Msa0462970:intron 25.0%
! GAATTGAAAGCAATGATAAT+TGG - chr3_3:62223916-62223935 Msa0462970:intron 25.0%
! AAGAAAAAAAATGAAGGGAA+AGG + chr3_3:62224026-62224045 None:intergenic 25.0%
! ATGATTGGACAAATAGTATT+CGG + chr3_3:62224131-62224150 None:intergenic 25.0%
!! CAAAAGTCATTCACAAATTT+TGG - chr3_3:62224253-62224272 Msa0462970:intron 25.0%
!! TTGAATCTTTGAGAAAAAAC+AGG + chr3_3:62224380-62224399 None:intergenic 25.0%
! AATTGTCTTATCAGGTAAAA+TGG + chr3_3:62224424-62224443 None:intergenic 25.0%
!!! AGGAGGTAAGTTTTTTTTTA+TGG - chr3_3:62224771-62224790 Msa0462970:intron 25.0%
!!! GGAGGTAAGTTTTTTTTTAT+GGG - chr3_3:62224772-62224791 Msa0462970:intron 25.0%
!!! GAGGTAAGTTTTTTTTTATG+GGG - chr3_3:62224773-62224792 Msa0462970:intron 25.0%
! GTGCTATAACTTAAATAATG+AGG + chr3_3:62224969-62224988 None:intergenic 25.0%
! TAGCACGATAATTTATAAAC+GGG - chr3_3:62224983-62225002 Msa0462970:intron 25.0%
!! TTCAAATCAATCCATTCTTT+TGG - chr3_3:62225019-62225038 Msa0462970:intron 25.0%
!!! ATGTCTTACAATTTTGAGAA+TGG + chr3_3:62225067-62225086 None:intergenic 25.0%
! GCAAATGTTTATTTCATCTT+AGG + chr3_3:62225139-62225158 None:intergenic 25.0%
!!! ATATATCAAAGGAAGGTATT+TGG + chr3_3:62225231-62225250 None:intergenic 25.0%
! AATGTTGCCATAGAATATTT+GGG - chr3_3:62225583-62225602 Msa0462970:intron 25.0%
! ATAAAGCCATTCATAAACTT+AGG + chr3_3:62225711-62225730 None:intergenic 25.0%
! CTATTTAATGTTCTCATGTA+TGG - chr3_3:62226044-62226063 Msa0462970:intron 25.0%
! TACAATGTCAAACTCAATAA+AGG - chr3_3:62226165-62226184 Msa0462970:CDS 25.0%
! ACAATGTCAAACTCAATAAA+GGG - chr3_3:62226166-62226185 Msa0462970:CDS 25.0%
!! TTTTACTTGGAAGTTTTTCA+AGG - chr3_3:62226371-62226390 Msa0462970:intron 25.0%
!! TATCTAGTCCTGTAATTTTA+AGG + chr3_3:62226400-62226419 None:intergenic 25.0%
! AAAAAAAGTTAACTTTGAGC+AGG - chr3_3:62226676-62226695 Msa0462970:intron 25.0%
!! TTTTAGTAGAAACCAACATT+TGG + chr3_3:62226749-62226768 None:intergenic 25.0%
! ATATCAACAAAAAGGGAAAA+GGG + chr3_3:62226777-62226796 None:intergenic 25.0%
! AACAAATTAACATTCATCAC+AGG + chr3_3:62226870-62226889 None:intergenic 25.0%
! AAATTTGTATGATCCTCAAA+AGG - chr3_3:62226927-62226946 Msa0462970:intron 25.0%
! GTAATTAGATTTACTCATTC+GGG + chr3_3:62227057-62227076 None:intergenic 25.0%
AAATCAATACCTTGTCAAGA+AGG - chr3_3:62219444-62219463 Msa0462970:CDS 30.0%
ATATGAATAAGTGTGAACCA+TGG - chr3_3:62219509-62219528 Msa0462970:CDS 30.0%
TATGAATAAGTGTGAACCAT+GGG - chr3_3:62219510-62219529 Msa0462970:CDS 30.0%
ATGCAGTGTTTATTTGATTC+AGG + chr3_3:62219862-62219881 None:intergenic 30.0%
TAAACTAAGTCTTCTTTGGT+AGG + chr3_3:62219969-62219988 None:intergenic 30.0%
CACATAAACTAAGTCTTCTT+TGG + chr3_3:62219973-62219992 None:intergenic 30.0%
CAAAGAAGACTTAGTTTATG+TGG - chr3_3:62219971-62219990 Msa0462970:intron 30.0%
CTAAGGTGTAATTAAACCAT+TGG + chr3_3:62220141-62220160 None:intergenic 30.0%
AGATAACGACAATATCTCTA+AGG + chr3_3:62220158-62220177 None:intergenic 30.0%
TTGTCGTTATCTTACTTTGA+TGG - chr3_3:62220166-62220185 Msa0462970:intron 30.0%
!!! TTTTTTGGTTTATTCAGAGC+TGG - chr3_3:62220375-62220394 Msa0462970:intron 30.0%
CTAAAATGGGAGAAACAAAA+TGG - chr3_3:62220398-62220417 Msa0462970:intron 30.0%
!!! AATGGTATTTTTTCTGTGTG+AGG - chr3_3:62220416-62220435 Msa0462970:intron 30.0%
!!! ATGGTATTTTTTCTGTGTGA+GGG - chr3_3:62220417-62220436 Msa0462970:intron 30.0%
! CAAAGACAAAGAGATTTTCA+AGG - chr3_3:62220507-62220526 Msa0462970:intron 30.0%
TTCAAGGGAAATGCATTAAT+TGG - chr3_3:62220523-62220542 Msa0462970:intron 30.0%
TCAAGGGAAATGCATTAATT+GGG - chr3_3:62220524-62220543 Msa0462970:intron 30.0%
AGGTAATTCTATCAAACACA+TGG + chr3_3:62220769-62220788 None:intergenic 30.0%
!! ACAACTTTTAGAGAAACTAC+TGG - chr3_3:62221066-62221085 Msa0462970:intron 30.0%
! GTCTTTAAGAAGGATAATTG+TGG - chr3_3:62221302-62221321 Msa0462970:intron 30.0%
GGATAATTGTGGAAAGAAAA+TGG - chr3_3:62221313-62221332 Msa0462970:intron 30.0%
AATTGTGGAAAGAAAATGGA+TGG - chr3_3:62221317-62221336 Msa0462970:intron 30.0%
AAAATGGATGGTTCAAAACA+TGG - chr3_3:62221329-62221348 Msa0462970:intron 30.0%
!!! GTTTGGTTTTCACTATTGTA+TGG + chr3_3:62221410-62221429 None:intergenic 30.0%
CAAAAGAAAACTCTTGGTTT+AGG + chr3_3:62221613-62221632 None:intergenic 30.0%
! CTAAACCAAGAGTTTTCTTT+TGG - chr3_3:62221611-62221630 Msa0462970:intron 30.0%
ATGGAAATGGCATATTTCAA+AGG - chr3_3:62221669-62221688 Msa0462970:intron 30.0%
ATCCATTGGATCAAAATACA+CGG + chr3_3:62221969-62221988 None:intergenic 30.0%
TGAGTTTCAGTTATATCCAT+TGG + chr3_3:62221983-62222002 None:intergenic 30.0%
ATGGATATAACTGAAACTCA+TGG - chr3_3:62221983-62222002 Msa0462970:intron 30.0%
TCGAAAAAGGTTGCAAAATT+AGG + chr3_3:62222083-62222102 None:intergenic 30.0%
!! TAATTTTGCAACCTTTTTCG+AGG - chr3_3:62222082-62222101 Msa0462970:intron 30.0%
! TTTTTCATCTTCCTCGAAAA+AGG + chr3_3:62222096-62222115 None:intergenic 30.0%
GGAAGATGAAAAATCAACTA+TGG - chr3_3:62222103-62222122 Msa0462970:intron 30.0%
AAATCAACTATGGAACACAT+TGG - chr3_3:62222113-62222132 Msa0462970:intron 30.0%
ATGTTTGTATCGAGTTTAGT+GGG + chr3_3:62222241-62222260 None:intergenic 30.0%
GTTTCTGTGATAGATTATGT+TGG - chr3_3:62222279-62222298 Msa0462970:intron 30.0%
ACCCGCAATTAAAAGATAAT+TGG - chr3_3:62222457-62222476 Msa0462970:intron 30.0%
! CTAAACATATTAGCTTCCTA+AGG - chr3_3:62222500-62222519 Msa0462970:intron 30.0%
TCAGTTCTTCTAAATCATGT+GGG + chr3_3:62223040-62223059 None:intergenic 30.0%
TTCAGTTCTTCTAAATCATG+TGG + chr3_3:62223041-62223060 None:intergenic 30.0%
ATTGCAACACTTCAATGAAA+CGG - chr3_3:62223063-62223082 Msa0462970:intron 30.0%
TGCTAACATTGGATCTAAAT+TGG - chr3_3:62223372-62223391 Msa0462970:intron 30.0%
TAACATTGGATCTAAATTGG+TGG - chr3_3:62223375-62223394 Msa0462970:intron 30.0%
ATCTAAATTGGTGGAAAACA+TGG - chr3_3:62223384-62223403 Msa0462970:intron 30.0%
CATTATCGTAACAGAAAACA+GGG - chr3_3:62223503-62223522 Msa0462970:intron 30.0%
ATGGCTATATATTGAATGAG+TGG - chr3_3:62223627-62223646 Msa0462970:intron 30.0%
TATCCATTGTGATAAGAAAG+TGG - chr3_3:62223672-62223691 Msa0462970:intron 30.0%
TCTTAAAATCAACGAGTACT+TGG + chr3_3:62223852-62223871 None:intergenic 30.0%
TTGAAAGCAATGATAATTGG+AGG - chr3_3:62223919-62223938 Msa0462970:intron 30.0%
TGATTGGACAAATAGTATTC+GGG + chr3_3:62224130-62224149 None:intergenic 30.0%
TTTGCTTACAAAGACAACAA+TGG - chr3_3:62224182-62224201 Msa0462970:intron 30.0%
!!! ATGACTTTTGCTGTTAAACA+AGG + chr3_3:62224243-62224262 None:intergenic 30.0%
! TACCTGATAAGACAATTTTC+TGG - chr3_3:62224427-62224446 Msa0462970:intron 30.0%
! ACCTGATAAGACAATTTTCT+GGG - chr3_3:62224428-62224447 Msa0462970:intron 30.0%
!! AGTTGACTTGACATTAGAAT+TGG + chr3_3:62224596-62224615 None:intergenic 30.0%
CACATTCAAGGATAACTTTA+AGG + chr3_3:62224643-62224662 None:intergenic 30.0%
! ATGATAAGGCATATGAGTTT+TGG - chr3_3:62224693-62224712 Msa0462970:intron 30.0%
!! AACAAAGGAAGGTATTTGAA+AGG - chr3_3:62224745-62224764 Msa0462970:intron 30.0%
!!! AGTTTTTTTTTATGGGGAGT+AGG - chr3_3:62224779-62224798 Msa0462970:intron 30.0%
!!! CTTAGGTTGATTTTCTTACT+TGG + chr3_3:62225122-62225141 None:intergenic 30.0%
ACATTTGCGTTGTAAAAGAT+AGG - chr3_3:62225151-62225170 Msa0462970:intron 30.0%
GAATGCAATGACAAGTAAAA+CGG + chr3_3:62225319-62225338 None:intergenic 30.0%
TTTACTTGTCATTGCATTCA+AGG - chr3_3:62225320-62225339 Msa0462970:intron 30.0%
CTTGAATACTTGGCTAAATA+AGG + chr3_3:62225506-62225525 None:intergenic 30.0%
CAAAGATGTTCTTGAATACT+TGG + chr3_3:62225516-62225535 None:intergenic 30.0%
CAAGTATTCAAGAACATCTT+TGG - chr3_3:62225514-62225533 Msa0462970:intron 30.0%
CCTGAAGAAGATAATTCTTT+GGG + chr3_3:62225545-62225564 None:intergenic 30.0%
ACCTGAAGAAGATAATTCTT+TGG + chr3_3:62225546-62225565 None:intergenic 30.0%
CAATGTTGCCATAGAATATT+TGG - chr3_3:62225582-62225601 Msa0462970:intron 30.0%
ACTAGTCCTAAGTTTATGAA+TGG - chr3_3:62225702-62225721 Msa0462970:intron 30.0%
TTATAGAGTTTGATGCAAAG+AGG - chr3_3:62225727-62225746 Msa0462970:intron 30.0%
TATAGAGTTTGATGCAAAGA+GGG - chr3_3:62225728-62225747 Msa0462970:intron 30.0%
TTATGCTGAATATAGTTTCC+TGG - chr3_3:62225988-62226007 Msa0462970:intron 30.0%
! AGTATTATTTCTTATGAGCC+AGG + chr3_3:62226009-62226028 None:intergenic 30.0%
!!! ATTGGTTTGGTTCCTTTTTT+AGG - chr3_3:62226111-62226130 Msa0462970:intron 30.0%
AATAAAGGGTAGAATTGTTC+AGG - chr3_3:62226180-62226199 Msa0462970:CDS 30.0%
! CACTCTTTTATTAGTACGAA+TGG + chr3_3:62226231-62226250 None:intergenic 30.0%
! AATAAAAGAGTGCAAGTTGA+TGG - chr3_3:62226239-62226258 Msa0462970:CDS 30.0%
! ATCAGTAGATTTTCAGCTAT+AGG - chr3_3:62226442-62226461 Msa0462970:intron 30.0%
CATATCAACAAAAAGGGAAA+AGG + chr3_3:62226778-62226797 None:intergenic 30.0%
!!! TTAGTTCTGTTTTACTCCTA+TGG - chr3_3:62226984-62227003 Msa0462970:intron 30.0%
! TATAAATCTGCAGTTTTGCA+CGG - chr3_3:62227077-62227096 Msa0462970:intron 30.0%
! AACCAAGACATTCTAGTTAA+GGG + chr3_3:62227106-62227125 None:intergenic 30.0%
! AAACCAAGACATTCTAGTTA+AGG + chr3_3:62227107-62227126 None:intergenic 30.0%
GAACACTTGAAACATGATTT+GGG + chr3_3:62227196-62227215 None:intergenic 30.0%
TGAACACTTGAAACATGATT+TGG + chr3_3:62227197-62227216 None:intergenic 30.0%
GCATAATTTGATGGAGTTAT+AGG + chr3_3:62227232-62227251 None:intergenic 30.0%
GAACAAAGGCAATAATTAGA+AGG + chr3_3:62227391-62227410 None:intergenic 30.0%
CTTCTTTCAAAACAGAACAA+AGG + chr3_3:62227405-62227424 None:intergenic 30.0%
!!! TGTTCTGTTTTGAAAGAAGA+AGG - chr3_3:62227406-62227425 Msa0462970:CDS 30.0%
TTTATAAGCTCTTCATCGGT+CGG + chr3_3:62219427-62219446 None:intergenic 35.0%
CCAGATCTAATCAATGACTT+TGG + chr3_3:62219815-62219834 None:intergenic 35.0%
! CCAAAGTCATTGATTAGATC+TGG - chr3_3:62219812-62219831 Msa0462970:intron 35.0%
CAAACAATGTCGTACTAAGA+CGG - chr3_3:62219929-62219948 Msa0462970:intron 35.0%
!! ACAATTTGGAATGGTGCTTT+TGG - chr3_3:62220026-62220045 Msa0462970:intron 35.0%
!! CAATTTGGAATGGTGCTTTT+GGG - chr3_3:62220027-62220046 Msa0462970:intron 35.0%
TAACCCTAAAATACCCTCAT+TGG - chr3_3:62220057-62220076 Msa0462970:intron 35.0%
!!! CTACCAATGAGGGTATTTTA+GGG + chr3_3:62220063-62220082 None:intergenic 35.0%
!!! TCTACCAATGAGGGTATTTT+AGG + chr3_3:62220064-62220083 None:intergenic 35.0%
TGGTGGAAAAAGAAGAAAAG+TGG - chr3_3:62220086-62220105 Msa0462970:intron 35.0%
CACATTTATTAGTGTCGTGT+TGG + chr3_3:62220244-62220263 None:intergenic 35.0%
CAACACGACACTAATAAATG+TGG - chr3_3:62220242-62220261 Msa0462970:intron 35.0%
TTATTCAGAGCTGGCTAAAA+TGG - chr3_3:62220384-62220403 Msa0462970:intron 35.0%
TATTCAGAGCTGGCTAAAAT+GGG - chr3_3:62220385-62220404 Msa0462970:intron 35.0%
!!! CAATTGGTTTTTTCACCACT+CGG + chr3_3:62220586-62220605 None:intergenic 35.0%
GAGTGGTGAAAAAACCAATT+GGG - chr3_3:62220585-62220604 Msa0462970:intron 35.0%
CAATATTACCATTCCATGTG+TGG + chr3_3:62220662-62220681 None:intergenic 35.0%
GTCAAAATTACGGTAACACA+AGG + chr3_3:62220789-62220808 None:intergenic 35.0%
! TCTCAGTAGAGTCTTTAAGA+AGG - chr3_3:62221292-62221311 Msa0462970:intron 35.0%
! TGGTTTTCACTATTGTATGG+AGG + chr3_3:62221407-62221426 None:intergenic 35.0%
AGAAATCAGAAAGAGTGGTT+TGG + chr3_3:62221427-62221446 None:intergenic 35.0%
TGAAGAGAAATCAGAAAGAG+TGG + chr3_3:62221432-62221451 None:intergenic 35.0%
GCAGTTATTACTTCAGCTAA+AGG + chr3_3:62221473-62221492 None:intergenic 35.0%
TTAGCTGAAGTAATAACTGC+TGG - chr3_3:62221473-62221492 Msa0462970:intron 35.0%
AAAACTCTTGGTTTAGGCTT+TGG + chr3_3:62221607-62221626 None:intergenic 35.0%
GATATCTCATCTGTGGTATA+TGG - chr3_3:62221650-62221669 Msa0462970:intron 35.0%
TCATCTGTGGTATATGGAAA+TGG - chr3_3:62221656-62221675 Msa0462970:intron 35.0%
GAAATGGCATATTTCAAAGG+TGG - chr3_3:62221672-62221691 Msa0462970:intron 35.0%
ATGTTGCTCCTGTCAATAAA+GGG + chr3_3:62222199-62222218 None:intergenic 35.0%
AATGTTGCTCCTGTCAATAA+AGG + chr3_3:62222200-62222219 None:intergenic 35.0%
CATGTTTGTATCGAGTTTAG+TGG + chr3_3:62222242-62222261 None:intergenic 35.0%
CACTAAACTCGATACAAACA+TGG - chr3_3:62222240-62222259 Msa0462970:intron 35.0%
GATACAAACATGGATAGACA+TGG - chr3_3:62222250-62222269 Msa0462970:intron 35.0%
!!! GAATTTGGTTTTGGTAACCT+TGG + chr3_3:62222312-62222331 None:intergenic 35.0%
AAAAGATGCATGCTATCTGA+GGG - chr3_3:62222556-62222575 Msa0462970:intron 35.0%
!!! GTTAGCTTTTGTGATGTCAA+AGG + chr3_3:62222745-62222764 None:intergenic 35.0%
! CCTTGACTAGAGGAATTTTA+TGG + chr3_3:62222820-62222839 None:intergenic 35.0%
CCATAAAATTCCTCTAGTCA+AGG - chr3_3:62222817-62222836 Msa0462970:intron 35.0%
GTTTAAGCTAGCTGATAAGT+GGG - chr3_3:62222946-62222965 Msa0462970:intron 35.0%
TGATAAGTGGGTGACATAAA+TGG - chr3_3:62222958-62222977 Msa0462970:intron 35.0%
TCTTCTAAATCATGTGGGTT+TGG + chr3_3:62223035-62223054 None:intergenic 35.0%
ACACTTCAATGAAACGGAAA+TGG - chr3_3:62223069-62223088 Msa0462970:intron 35.0%
ATGAAACGGAAATGGAAACT+TGG - chr3_3:62223077-62223096 Msa0462970:intron 35.0%
AGCATTGCTATATCAAGTGA+AGG - chr3_3:62223198-62223217 Msa0462970:intron 35.0%
AAATTGGTGGAAAACATGGA+TGG - chr3_3:62223388-62223407 Msa0462970:intron 35.0%
GCATTATCGTAACAGAAAAC+AGG - chr3_3:62223502-62223521 Msa0462970:intron 35.0%
GAACCACTTTCTTATCACAA+TGG + chr3_3:62223678-62223697 None:intergenic 35.0%
GTCAATCAAGACTTGATCAA+TGG - chr3_3:62223812-62223831 Msa0462970:intron 35.0%
TAGTCTTTGAATGACAGTAG+TGG + chr3_3:62224059-62224078 None:intergenic 35.0%
GCTGTTTAGAAGAGAATGAT+TGG + chr3_3:62224146-62224165 None:intergenic 35.0%
ACCCAGAAAATTGTCTTATC+AGG + chr3_3:62224432-62224451 None:intergenic 35.0%
TATCCTTGAATGTGATGACA+AGG - chr3_3:62224649-62224668 Msa0462970:intron 35.0%
TTTCCTTGTCATCACATTCA+AGG + chr3_3:62224655-62224674 None:intergenic 35.0%
AACTTTACAATCACCACATG+CGG + chr3_3:62224720-62224739 None:intergenic 35.0%
!! GGAAGGTATTTGAAAGGTAA+AGG - chr3_3:62224751-62224770 Msa0462970:intron 35.0%
AGGTATTTGAAAGGTAAAGG+AGG - chr3_3:62224754-62224773 Msa0462970:intron 35.0%
ATAGAACAGCAAGAATGTTG+AGG - chr3_3:62224919-62224938 Msa0462970:intron 35.0%
TAGAACAGCAAGAATGTTGA+GGG - chr3_3:62224920-62224939 Msa0462970:intron 35.0%
TAAATAATGAGGACCCCTTA+TGG + chr3_3:62224958-62224977 None:intergenic 35.0%
TGGAACAACAAAAATGTCGA+GGG + chr3_3:62225047-62225066 None:intergenic 35.0%
ATGGAACAACAAAAATGTCG+AGG + chr3_3:62225048-62225067 None:intergenic 35.0%
! AAGGAGGAAAGTCTTTTTAC+CGG + chr3_3:62225202-62225221 None:intergenic 35.0%
!! ATCAAAGGAAGGTATTTGGA+AGG + chr3_3:62225227-62225246 None:intergenic 35.0%
TTCATATGTTGCAGTTGATC+CGG - chr3_3:62225367-62225386 Msa0462970:intron 35.0%
AGTTGATCCGGTATTGTAAT+TGG - chr3_3:62225379-62225398 Msa0462970:intron 35.0%
TTGAGTGCCAATTACAATAC+CGG + chr3_3:62225389-62225408 None:intergenic 35.0%
! GCACTCAAGTTTTTGTTGAT+GGG - chr3_3:62225401-62225420 Msa0462970:intron 35.0%
! CCAACAGATTGATTCTTTGT+TGG + chr3_3:62225466-62225485 None:intergenic 35.0%
CCAACAAAGAATCAATCTGT+TGG - chr3_3:62225463-62225482 Msa0462970:intron 35.0%
CCCAAAGAATTATCTTCTTC+AGG - chr3_3:62225542-62225561 Msa0462970:intron 35.0%
ATTCTATGGCAACATTGCTA+AGG + chr3_3:62225579-62225598 None:intergenic 35.0%
GCTCTTTCCCAAATATTCTA+TGG + chr3_3:62225593-62225612 None:intergenic 35.0%
TAGAATATTTGGGAAAGAGC+AGG - chr3_3:62225593-62225612 Msa0462970:intron 35.0%
ATCATCACATGATGAAGACA+TGG - chr3_3:62225780-62225799 Msa0462970:intron 35.0%
AGAAGCTTGACAACAATGAA+AGG - chr3_3:62225806-62225825 Msa0462970:intron 35.0%
TAGCACACTAAATACAAGCT+CGG + chr3_3:62225836-62225855 None:intergenic 35.0%
CCATTTGATCCTCCTAAAAA+AGG + chr3_3:62226126-62226145 None:intergenic 35.0%
!!! CCTTTTTTAGGAGGATCAAA+TGG - chr3_3:62226123-62226142 Msa0462970:intron 35.0%
!! TTTTTAGGAGGATCAAATGG+TGG - chr3_3:62226126-62226145 Msa0462970:intron 35.0%
AAACTTCCAAGTAAAACCTG+TGG + chr3_3:62226367-62226386 None:intergenic 35.0%
!! CTAGTCCTGTAATTTTAAGG+AGG + chr3_3:62226397-62226416 None:intergenic 35.0%
TTAGAGTAAGTACGTGGATT+AGG - chr3_3:62226471-62226490 Msa0462970:intron 35.0%
!!! GTTGTTTTTTTAGCCTGCTT+GGG - chr3_3:62226551-62226570 Msa0462970:intron 35.0%
!! TTTGGTGTTCCGTATATATG+CGG - chr3_3:62226575-62226594 Msa0462970:intron 35.0%
TGGAAGCAACAATAAACCAT+AGG + chr3_3:62227003-62227022 None:intergenic 35.0%
TACCCTTAACTAGAATGTCT+TGG - chr3_3:62227101-62227120 Msa0462970:intron 35.0%
! CTTGAAACATGATTTGGGAT+AGG + chr3_3:62227191-62227210 None:intergenic 35.0%
! TCATGTTTCAAGTGTTCACA+CGG - chr3_3:62227199-62227218 Msa0462970:intron 35.0%
CCTTAAAAAGCTGAGAGAAA+TGG + chr3_3:62227285-62227304 None:intergenic 35.0%
! CCATTTCTCTCAGCTTTTTA+AGG - chr3_3:62227282-62227301 Msa0462970:intron 35.0%
!! TCTCAGCTTTTTAAGGAGAA+AGG - chr3_3:62227289-62227308 Msa0462970:CDS 35.0%
!! CTCAGCTTTTTAAGGAGAAA+GGG - chr3_3:62227290-62227309 Msa0462970:CDS 35.0%
TGTCATCAACCTTCTTGACA+AGG + chr3_3:62219456-62219475 None:intergenic 40.0%
TGTTACAGATCTCTAGGCAT+CGG + chr3_3:62219783-62219802 None:intergenic 40.0%
CATCGATGTTACAGATCTCT+AGG + chr3_3:62219789-62219808 None:intergenic 40.0%
! GTCATTGATTAGATCTGGAC+TGG - chr3_3:62219817-62219836 Msa0462970:intron 40.0%
AATACCCTCATTGGTAGATC+TGG - chr3_3:62220066-62220085 Msa0462970:intron 40.0%
! AAGAAAAGTGGTGACGACTA+GGG - chr3_3:62220098-62220117 Msa0462970:intron 40.0%
! TTATTAGTGTCGTGTTGGTG+CGG + chr3_3:62220239-62220258 None:intergenic 40.0%
AGGGAGAGAAAATATCCAAC+TGG - chr3_3:62220436-62220455 Msa0462970:intron 40.0%
GAAAATATCCAACTGGCCAA+AGG - chr3_3:62220443-62220462 Msa0462970:intron 40.0%
! TAGTAGCTCTATTGGTCCTT+TGG + chr3_3:62220462-62220481 None:intergenic 40.0%
ACCAATAGAGCTACTAATGC+TGG - chr3_3:62220466-62220485 Msa0462970:intron 40.0%
CGAGTGGTGAAAAAACCAAT+TGG - chr3_3:62220584-62220603 Msa0462970:intron 40.0%
GTATTCATGCATGACCCAAT+TGG + chr3_3:62220602-62220621 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG + chr3_3:62220657-62220676 None:intergenic 40.0%
ACAGATCCTCGATGAATGTT+TGG + chr3_3:62220875-62220894 None:intergenic 40.0%
TGGATGGTTCAAAACATGGA+AGG - chr3_3:62221333-62221352 Msa0462970:intron 40.0%
! AGGTTTAACTCCTCTAGAGA+AGG - chr3_3:62221353-62221372 Msa0462970:intron 40.0%
! ATTTGATGGTCCTTCTCTAG+AGG + chr3_3:62221366-62221385 None:intergenic 40.0%
TTGAACCAAACCTCAATGGT+CGG - chr3_3:62221497-62221516 Msa0462970:intron 40.0%
CTCAAGAACAATCACTGTTG+AGG - chr3_3:62221543-62221562 Msa0462970:intron 40.0%
CAGTTGGAGAATGAGAATCT+TGG - chr3_3:62221569-62221588 Msa0462970:intron 40.0%
!! TTGGTTTAGGCTTTGGTTTG+AGG + chr3_3:62221600-62221619 None:intergenic 40.0%
CTCTCCCAAAAGAAAACTCT+TGG + chr3_3:62221619-62221638 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG - chr3_3:62221643-62221662 Msa0462970:intron 40.0%
GCATATTTCAAAGGTGGTCT+GGG - chr3_3:62221678-62221697 Msa0462970:intron 40.0%
CAAGAATTGTCATCAGCTTC+AGG - chr3_3:62221704-62221723 Msa0462970:intron 40.0%
ATGTGGTCAATGATAGCTTG+TGG - chr3_3:62221729-62221748 Msa0462970:intron 40.0%
!!! GACCGTGTATTTTGATCCAA+TGG - chr3_3:62221964-62221983 Msa0462970:intron 40.0%
CTGTCAACTTTCTCAGGATA+TGG + chr3_3:62222029-62222048 None:intergenic 40.0%
TCCTGAGAAAGTTGACAGAT+TGG - chr3_3:62222031-62222050 Msa0462970:intron 40.0%
ACCAATCTGTCAACTTTCTC+AGG + chr3_3:62222035-62222054 None:intergenic 40.0%
! TTAGGAGTCTTGTAACCTCT+AGG + chr3_3:62222065-62222084 None:intergenic 40.0%
CAGTTGTTCCCTTTATTGAC+AGG - chr3_3:62222188-62222207 Msa0462970:intron 40.0%
!! ATTATGTTGGCTTCAGTCCA+AGG - chr3_3:62222292-62222311 Msa0462970:intron 40.0%
!! TAGTTGCTGACTTCCTTAAG+AGG - chr3_3:62222359-62222378 Msa0462970:intron 40.0%
GATGGTTTCTGAACCTCTTA+AGG + chr3_3:62222375-62222394 None:intergenic 40.0%
AAGAGGTTCAGAAACCATCT+AGG - chr3_3:62222376-62222395 Msa0462970:intron 40.0%
TTTCTCTATGTGTGCTCCTT+AGG + chr3_3:62222519-62222538 None:intergenic 40.0%
GAAAAGATGCATGCTATCTG+AGG - chr3_3:62222555-62222574 Msa0462970:intron 40.0%
TAGAACGTCTTCCATTGGAT+CGG + chr3_3:62222625-62222644 None:intergenic 40.0%
TAACGCCTGAGATCCTTTAA+GGG - chr3_3:62222643-62222662 Msa0462970:intron 40.0%
! TTTTCCCCTTAAAGGATCTC+AGG + chr3_3:62222651-62222670 None:intergenic 40.0%
TTGTCTTAAGGTCAACCGAA+AGG - chr3_3:62222682-62222701 Msa0462970:intron 40.0%
TGAGCTTGTGTTCTTCCTTT+CGG + chr3_3:62222700-62222719 None:intergenic 40.0%
! CTTTTGATCTCCTTGACTAG+AGG + chr3_3:62222830-62222849 None:intergenic 40.0%
TCAAGGAGATCAAAAGCAAG+AGG - chr3_3:62222834-62222853 Msa0462970:intron 40.0%
AAAACACTACTAAGAAGGGC+AGG - chr3_3:62222924-62222943 Msa0462970:intron 40.0%
GGTTTAAGCTAGCTGATAAG+TGG - chr3_3:62222945-62222964 Msa0462970:intron 40.0%
CGCGAAATGATTGCTAACAT+TGG - chr3_3:62223361-62223380 Msa0462970:intron 40.0%
TATCGTAACAGAAAACAGGG+AGG - chr3_3:62223506-62223525 Msa0462970:intron 40.0%
ATCGTAACAGAAAACAGGGA+GGG - chr3_3:62223507-62223526 Msa0462970:intron 40.0%
!! AGTATTCGGGCTAGTAAAGT+TGG + chr3_3:62224117-62224136 None:intergenic 40.0%
GGCAATCAAGTTTGTGTTGT+TGG + chr3_3:62224575-62224594 None:intergenic 40.0%
TGATGACAAGGAAAACTCCA+AGG - chr3_3:62224661-62224680 Msa0462970:intron 40.0%
GGAGCCAAAAAAAGCCATAA+GGG - chr3_3:62224941-62224960 Msa0462970:intron 40.0%
GAGCCAAAAAAAGCCATAAG+GGG - chr3_3:62224942-62224961 Msa0462970:intron 40.0%
!! AAGTTTCAAGTTCCTACTGC+CGG - chr3_3:62225180-62225199 Msa0462970:intron 40.0%
! AAAGTCTTTTTACCGGCAGT+AGG + chr3_3:62225195-62225214 None:intergenic 40.0%
AGGTATTTGGAAGGTAAAGG+AGG + chr3_3:62225218-62225237 None:intergenic 40.0%
!! GGAAGGTATTTGGAAGGTAA+AGG + chr3_3:62225221-62225240 None:intergenic 40.0%
CAATGACAAGTAAAACGGCA+AGG + chr3_3:62225314-62225333 None:intergenic 40.0%
! GGCACTCAAGTTTTTGTTGA+TGG - chr3_3:62225400-62225419 Msa0462970:intron 40.0%
TGATGCAAAGAGGGATATCT+CGG - chr3_3:62225737-62225756 Msa0462970:intron 40.0%
AGCTTGACAACAATGAAAGG+AGG - chr3_3:62225809-62225828 Msa0462970:intron 40.0%
!!! GGTTTGGTTCCTTTTTTAGG+AGG - chr3_3:62226114-62226133 Msa0462970:intron 40.0%
TATCCATCGTTATGTGACCA+GGG - chr3_3:62226268-62226287 Msa0462970:CDS 40.0%
!! GAGCTTTTTCTTCTGCAATC+TGG - chr3_3:62226339-62226358 Msa0462970:intron 40.0%
CAAGGCCTCCTTAAAATTAC+AGG - chr3_3:62226389-62226408 Msa0462970:intron 40.0%
AGACTGTTAGAGTAAGTACG+TGG - chr3_3:62226465-62226484 Msa0462970:intron 40.0%
TCATAGCAGAGTGGAGTTTA+GGG - chr3_3:62226524-62226543 Msa0462970:intron 40.0%
!!! GGTTGTTTTTTTAGCCTGCT+TGG - chr3_3:62226550-62226569 Msa0462970:intron 40.0%
!! TTTTTAGCCTGCTTGGGTTT+TGG - chr3_3:62226557-62226576 Msa0462970:intron 40.0%
! CAACAAGTGCCGCATATATA+CGG + chr3_3:62226587-62226606 None:intergenic 40.0%
TGGATCGTTCATCGAGTTAT+CGG + chr3_3:62226729-62226748 None:intergenic 40.0%
TCGATGAACGATCCAAATGT+TGG - chr3_3:62226734-62226753 Msa0462970:intron 40.0%
!! CCTCATCAAAGTACCTTTTG+AGG + chr3_3:62226943-62226962 None:intergenic 40.0%
!! CCTCAAAAGGTACTTTGATG+AGG - chr3_3:62226940-62226959 Msa0462970:intron 40.0%
!! GATGAGGAGTGCCATTTAAA+AGG - chr3_3:62226956-62226975 Msa0462970:intron 40.0%
TCAAGGGCTGCATAATTTGA+TGG + chr3_3:62227241-62227260 None:intergenic 40.0%
TCAAATTATGCAGCCCTTGA+AGG - chr3_3:62227241-62227260 Msa0462970:intron 40.0%
GCAGTACAAAATGCCTTCAA+GGG + chr3_3:62227257-62227276 None:intergenic 40.0%
TGCAGTACAAAATGCCTTCA+AGG + chr3_3:62227258-62227277 None:intergenic 40.0%
TGTTCCAGAATCTCGAATGT+TGG - chr3_3:62227363-62227382 Msa0462970:CDS 40.0%
CAAGCAAGTGTTTGTATGTG+TGG - chr3_3:62227442-62227461 Msa0462970:CDS 40.0%
GAAAAGGTCAAATTTCCGGC+TGG - chr3_3:62219388-62219407 Msa0462970:CDS 45.0%
AATTCACCTGGCAAATCCCA+TGG + chr3_3:62219529-62219548 None:intergenic 45.0%
GGATTTGAAAAGCTACGCCT+TGG - chr3_3:62219602-62219621 Msa0462970:CDS 45.0%
TCCACCAGATCTACCAATGA+GGG + chr3_3:62220073-62220092 None:intergenic 45.0%
TTCCACCAGATCTACCAATG+AGG + chr3_3:62220074-62220093 None:intergenic 45.0%
! GAAGAAAAGTGGTGACGACT+AGG - chr3_3:62220097-62220116 Msa0462970:intron 45.0%
CTAGGGTTTGGCAAAGAGAA+AGG - chr3_3:62220115-62220134 Msa0462970:intron 45.0%
TTGGCAAAGAGAAAGGCCAA+TGG - chr3_3:62220122-62220141 Msa0462970:intron 45.0%
CTATGTACCACCGACACATA+AGG - chr3_3:62220210-62220229 Msa0462970:intron 45.0%
! GCCAGCATTAGTAGCTCTAT+TGG + chr3_3:62220470-62220489 None:intergenic 45.0%
! GAGCTACTAATGCTGGCTAT+TGG - chr3_3:62220473-62220492 Msa0462970:intron 45.0%
GGTCATGCATGAATACCGAT+TGG - chr3_3:62220606-62220625 Msa0462970:intron 45.0%
! CATGCATGAATACCGATTGG+CGG - chr3_3:62220609-62220628 Msa0462970:intron 45.0%
! ATGCATGAATACCGATTGGC+GGG - chr3_3:62220610-62220629 Msa0462970:intron 45.0%
CAACCTATCCACACATGGAA+TGG - chr3_3:62220651-62220670 Msa0462970:intron 45.0%
GTCGATCCAAACATTCATCG+AGG - chr3_3:62220866-62220885 Msa0462970:intron 45.0%
TGGCTTGAACCAAACCTCAA+TGG - chr3_3:62221493-62221512 Msa0462970:intron 45.0%
TGAACCAAACCTCAATGGTC+GGG - chr3_3:62221498-62221517 Msa0462970:intron 45.0%
AATTCCCGACCATTGAGGTT+TGG + chr3_3:62221505-62221524 None:intergenic 45.0%
ATCACTGTTGAGGATGCAGT+TGG - chr3_3:62221553-62221572 Msa0462970:intron 45.0%
!! GTTTAGGCTTTGGTTTGAGG+TGG + chr3_3:62221597-62221616 None:intergenic 45.0%
GGCATATTTCAAAGGTGGTC+TGG - chr3_3:62221677-62221696 Msa0462970:intron 45.0%
GTCTTGTAACCTCTAGGTAG+AGG + chr3_3:62222059-62222078 None:intergenic 45.0%
ACTTATTGTGCAGTGTGACG+AGG - chr3_3:62222139-62222158 Msa0462970:intron 45.0%
CTTATTGTGCAGTGTGACGA+GGG - chr3_3:62222140-62222159 Msa0462970:intron 45.0%
TATCGAGTTTAGTGGGAGAG+AGG + chr3_3:62222234-62222253 None:intergenic 45.0%
! TGGACTAGGCATTTCCTAGA+TGG + chr3_3:62222393-62222412 None:intergenic 45.0%
ATGCCTAGTCCAACTTCATG+AGG - chr3_3:62222401-62222420 Msa0462970:intron 45.0%
CATATCCAGCCTCATGAAGT+TGG + chr3_3:62222413-62222432 None:intergenic 45.0%
TCGGTTGAACGATGGAGATA+AGG + chr3_3:62222593-62222612 None:intergenic 45.0%
TCGCATATTCGGTTGAACGA+TGG + chr3_3:62222601-62222620 None:intergenic 45.0%
!! ATTGGATCGGCTCGCATATT+CGG + chr3_3:62222612-62222631 None:intergenic 45.0%
CTAACGCCTGAGATCCTTTA+AGG - chr3_3:62222642-62222661 Msa0462970:intron 45.0%
AACGCCTGAGATCCTTTAAG+GGG - chr3_3:62222644-62222663 Msa0462970:intron 45.0%
CAGCGCAATTAGCTATGACT+TGG + chr3_3:62222886-62222905 None:intergenic 45.0%
! CGAAATCATCACGACCGTTT+TGG + chr3_3:62223459-62223478 None:intergenic 45.0%
ACAGAAAACAGGGAGGGTAA+TGG - chr3_3:62223513-62223532 Msa0462970:intron 45.0%
GGAGGATCATACAGATACCT+TGG - chr3_3:62223937-62223956 Msa0462970:intron 45.0%
!! GAATGGGAATTGGTTTGCCA+AGG + chr3_3:62223957-62223976 None:intergenic 45.0%
GCATCTTGAGCTTGTCTCAA+TGG + chr3_3:62224323-62224342 None:intergenic 45.0%
!!! TATGAGTTTTGGACCGCATG+TGG - chr3_3:62224704-62224723 Msa0462970:intron 45.0%
GGGAGCCAAAAAAAGCCATA+AGG - chr3_3:62224940-62224959 Msa0462970:intron 45.0%
!!! GGACCCCTTATGGCTTTTTT+TGG + chr3_3:62224948-62224967 None:intergenic 45.0%
GATGCAAAGAGGGATATCTC+GGG - chr3_3:62225738-62225757 Msa0462970:intron 45.0%
GTGTTAAGATTGTGTCCCTC+AGG - chr3_3:62226083-62226102 Msa0462970:intron 45.0%
TTAAGATTGTGTCCCTCAGG+TGG - chr3_3:62226086-62226105 Msa0462970:intron 45.0%
CCAAACCAATATCCACCTGA+GGG + chr3_3:62226101-62226120 None:intergenic 45.0%
ACCAAACCAATATCCACCTG+AGG + chr3_3:62226102-62226121 None:intergenic 45.0%
GTATCCATCGTTATGTGACC+AGG - chr3_3:62226267-62226286 Msa0462970:CDS 45.0%
!! GTGGATTAGGAACTTTGAGC+AGG - chr3_3:62226484-62226503 Msa0462970:intron 45.0%
TTCCAACTGTCATAGCAGAG+TGG - chr3_3:62226515-62226534 Msa0462970:intron 45.0%
GTCATAGCAGAGTGGAGTTT+AGG - chr3_3:62226523-62226542 Msa0462970:intron 45.0%
CATAGCAGAGTGGAGTTTAG+GGG - chr3_3:62226525-62226544 Msa0462970:intron 45.0%
TTTGAGCAGGAGACTGTCAA+AGG - chr3_3:62226689-62226708 Msa0462970:intron 45.0%
TCGTTCATCGAGTTATCGGA+CGG + chr3_3:62226725-62226744 None:intergenic 45.0%
! AACATGATTTGGGATAGGCC+TGG + chr3_3:62227186-62227205 None:intergenic 45.0%
! TGTTTCAAGTGTTCACACGG+AGG - chr3_3:62227202-62227221 Msa0462970:intron 45.0%
!! CATTCGAGATTCTGGAACAG+AGG + chr3_3:62227362-62227381 None:intergenic 45.0%
!!! TAAAAATTAGTTTTTATTTT+AGG - chr3_3:62224871-62224890 Msa0462970:intron 5.0%
!!! TTTTAAAATTTATATATCAA+AGG + chr3_3:62225242-62225261 None:intergenic 5.0%
!!! ACTTTTTTTTTTTTTTTAAA+CGG + chr3_3:62226665-62226684 None:intergenic 5.0%
GGAGAGAATCGATAACCAGC+CGG + chr3_3:62219406-62219425 None:intergenic 50.0%
TGTGAACCATGGGATTTGCC+AGG - chr3_3:62219520-62219539 Msa0462970:CDS 50.0%
ACCCTCATTGGTAGATCTGG+TGG - chr3_3:62220069-62220088 Msa0462970:intron 50.0%
! AAGTGGTGACGACTAGGGTT+TGG - chr3_3:62220103-62220122 Msa0462970:intron 50.0%
GGTGCGGTTACCTTATGTGT+CGG + chr3_3:62220223-62220242 None:intergenic 50.0%
CTATTGGTCCTTTGGCCAGT+TGG + chr3_3:62220454-62220473 None:intergenic 50.0%
GCTGGCTATTGGAAAGCAAC+AGG - chr3_3:62220484-62220503 Msa0462970:intron 50.0%
AGAGTGTGTTACCCGCCAAT+CGG + chr3_3:62220624-62220643 None:intergenic 50.0%
GAGCACAACCTATCCACACA+TGG - chr3_3:62220646-62220665 Msa0462970:intron 50.0%
TGACGAATTCCCGACCATTG+AGG + chr3_3:62221510-62221529 None:intergenic 50.0%
GTCATCAGCTTCAGGACATG+TGG - chr3_3:62221712-62221731 Msa0462970:intron 50.0%
! AGATTGGTGCCTCTACCTAG+AGG - chr3_3:62222047-62222066 Msa0462970:intron 50.0%
CAGCCTCATGAAGTTGGACT+AGG + chr3_3:62222407-62222426 None:intergenic 50.0%
CTAGTCCAACTTCATGAGGC+TGG - chr3_3:62222405-62222424 Msa0462970:intron 50.0%
TTGCGGGTGCATGTCAATGA+TGG + chr3_3:62222445-62222464 None:intergenic 50.0%
ATGCATGCTATCTGAGGGAG+AGG - chr3_3:62222561-62222580 Msa0462970:intron 50.0%
GAATATGCGAGCCGATCCAA+TGG - chr3_3:62222611-62222630 Msa0462970:intron 50.0%
GGCGTTAGAACGTCTTCCAT+TGG + chr3_3:62222630-62222649 None:intergenic 50.0%
!! TGTCGAGGGTGCCAAAAGAA+TGG + chr3_3:62225033-62225052 None:intergenic 50.0%
TGTGTCCCTCAGGTGGATAT+TGG - chr3_3:62226093-62226112 Msa0462970:intron 50.0%
! CCCTCAGGTGGATATTGGTT+TGG - chr3_3:62226098-62226117 Msa0462970:intron 50.0%
AAGCCCTGGTCACATAACGA+TGG + chr3_3:62226274-62226293 None:intergenic 50.0%
GCTAGTAGAGAAAGAAGCCC+TGG + chr3_3:62226288-62226307 None:intergenic 50.0%
CTCCACTCTGCTATGACAGT+TGG + chr3_3:62226520-62226539 None:intergenic 50.0%
GTAGGTAACAGTCGAAAGCC+AGG - chr3_3:62227165-62227184 Msa0462970:intron 50.0%
GGCACCAACATTCGAGATTC+TGG + chr3_3:62227370-62227389 None:intergenic 50.0%
GCGGTTACCTTATGTGTCGG+TGG + chr3_3:62220220-62220239 None:intergenic 55.0%
!! TACAAAGGAAGAGCGCCGAG+TGG - chr3_3:62220568-62220587 Msa0462970:intron 55.0%
! CTGGCGCCACAGGTTTTACT+TGG - chr3_3:62226358-62226377 Msa0462970:intron 55.0%
AGCAGAGTGGAGTTTAGGGG+TGG - chr3_3:62226528-62226547 Msa0462970:intron 55.0%
GCAGAGTGGAGTTTAGGGGT+GGG - chr3_3:62226529-62226548 Msa0462970:intron 55.0%
CGGAACACCAAAACCCAAGC+AGG + chr3_3:62226567-62226586 None:intergenic 55.0%
CGTCCATACCTTGCGTCTTG+CGG - chr3_3:62226618-62226637 Msa0462970:intron 55.0%
GTCCATACCTTGCGTCTTGC+GGG - chr3_3:62226619-62226638 Msa0462970:intron 55.0%
TCCATACCTTGCGTCTTGCG+GGG - chr3_3:62226620-62226639 Msa0462970:intron 55.0%
CTTCTGCAATCTGGCGCCAC+AGG - chr3_3:62226348-62226367 Msa0462970:intron 60.0%
TCCCCGCAAGACGCAAGGTA+TGG + chr3_3:62226624-62226643 None:intergenic 60.0%
TACCTTGCGTCTTGCGGGGA+TGG - chr3_3:62226624-62226643 Msa0462970:intron 60.0%
CGCCATCCCCGCAAGACGCA+AGG + chr3_3:62226629-62226648 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62219346 62227483 62219346 ID=Msa0462970;Name=Msa0462970
chr3_3 mRNA 62219346 62227483 62219346 ID=Msa0462970-mRNA-1;Parent=Msa0462970;Name=Msa0462970-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|225
chr3_3 exon 62227288 62227483 62227288 ID=Msa0462970-mRNA-1:exon:13292;Parent=Msa0462970-mRNA-1
chr3_3 exon 62226157 62226323 62226157 ID=Msa0462970-mRNA-1:exon:13291;Parent=Msa0462970-mRNA-1
chr3_3 exon 62219346 62219660 62219346 ID=Msa0462970-mRNA-1:exon:13290;Parent=Msa0462970-mRNA-1
chr3_3 CDS 62227288 62227483 62227288 ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1
chr3_3 CDS 62226157 62226323 62226157 ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1
chr3_3 CDS 62219346 62219660 62219346 ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1
Gene Sequence

>Msa0462970

ATGGGATCAAATGAGAATGTTTACAATCAAAAAATGGAAAATGAAAAGGTCAAATTTCCGGCTGGTTATCGATTCTCTCCGACCGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAATTTCTGTGCTATAGATATTGCTGAAGTTGATATGAATAAGTGTGAACCATGGGATTTGCCAGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACAAAGGAAGAGCGCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGGCGGGTAACACACTCTCTGAGCACAACCTATCCACACATGGAATGGTAACAGTCGAAAGCCAGGCCTATCCCAAATCATGTTTCAAGTGTTCACACGGAGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAAGGCATTTTGTACTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTACAATCATCTTATCAAGTCTGCATCAATCAAACGTGCAGCAGCCTCTGTTCCAGAATCTCGAATGTTGGTGCCTTCTAATTATTGCCTTTGTTCTGTTTTGAAAGAAGAAGGTGTTTTGATCTTTCAAGCAAGTGTTTGTATGTGTGGTTTTCTTTTTCCTTCATAA
Protein sequence

>Msa0462970

MGSNENVYNQKMENEKVKFPAGYRFSPTDEELINQYLVKKVDDNNFCAIDIAEVDMNKCEPWDLPGKDKEIFKGNALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLAGNTLSEHNLSTHGMVTVESQAYPKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPESRMLVPSNYCLCSVLKEEGVLIFQASVCMCGFLFPS*