AlfalfaGEDB | Msa0462970

M. sativa cultivar zhongmu-4 / Msa0462970

KEGG: -
GO: GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462970	XP_003600845.2	66.038	159	16	1	1	121	1	159	1.67e-62	209

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462970	sp\|Q9FLR3\|NAC79_ARATH	50.000	144	33	2	11	116	9	151	8.97e-38	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462970	A0A072V070	97.143	70	2	0	121	190	5	74	3.78e-40	142

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TFs/TRs:

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Gene ID	Type	Classification
Msa0462970	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462970	MtrunA17_Chr7g0217721	63.743	171	12	2	1	121	1	171	1.11e-65	206
Msa0462970	MtrunA17_Chr7g0217711	59.887	177	27	2	1	133	1	177	3.01e-63	194
Msa0462970	MtrunA17_Chr3g0113051	98.551	69	1	0	122	190	123	191	6.20e-42	140
Msa0462970	MtrunA17_Chr4g0060931	52.817	142	28	2	13	116	11	151	7.44e-41	142
Msa0462970	MtrunA17_Chr6g0453451	50.685	146	33	2	14	121	15	159	2.24e-40	140
Msa0462970	MtrunA17_Chr3g0091921	49.333	150	37	2	5	116	2	150	1.86e-37	132
Msa0462970	MtrunA17_Chr6g0461661	49.630	135	28	2	14	108	13	147	4.05e-36	130
Msa0462970	MtrunA17_Chr3g0113041	85.075	67	10	0	1	67	1	67	1.74e-35	120
Msa0462970	MtrunA17_Chr3g0113011	75.342	73	18	0	1	73	1	73	3.19e-35	119
Msa0462970	MtrunA17_Chr6g0484441	49.206	126	26	1	19	106	5	130	1.09e-34	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462970	AT5G07680.1	50.000	144	33	2	11	116	9	151	9.12e-39	137
Msa0462970	AT3G29035.1	50.000	144	34	1	3	108	8	151	2.76e-38	135
Msa0462970	AT5G61430.1	49.296	142	33	2	13	116	10	150	3.73e-38	135
Msa0462970	AT5G07680.2	50.725	138	29	2	17	116	1	137	3.88e-37	132
Msa0462970	AT5G39610.1	50.000	134	29	1	13	108	14	147	2.67e-35	127
Msa0462970	AT3G55770.3	91.935	62	5	0	122	183	121	182	5.77e-35	123
Msa0462970	AT3G55770.3	46.377	69	36	1	121	189	22	89	1.84e-12	64.3
Msa0462970	AT3G55770.5	91.935	62	5	0	122	183	121	182	5.77e-35	123
Msa0462970	AT3G55770.5	46.377	69	36	1	121	189	22	89	1.84e-12	64.3
Msa0462970	AT3G55770.2	91.935	62	5	0	122	183	121	182	5.77e-35	123

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Find 42 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATACCTTGTCAAGA+AGG	0.466786	3_3:-62227363	Msa0462970:CDS
AAATGAAAAGGTCAAATTTC+CGG	0.296027	3_3:-62227423	Msa0462970:CDS
AACATGATTTGGGATAGGCC+TGG	0.600433	3_3:+62219624	None:intergenic
AATTCACCTGGCAAATCCCA+TGG	0.596462	3_3:+62227281	None:intergenic
AGAGTGTGTTACCCGCCAAT+CGG	0.570583	3_3:+62226186	None:intergenic
ATATGAATAAGTGTGAACCA+TGG	0.681966	3_3:-62227298	Msa0462970:CDS
ATGCATGAATACCGATTGGC+GGG	0.543086	3_3:-62226197	Msa0462970:CDS
CAACCTATCCACACATGGAA+TGG	0.547037	3_3:-62226156	Msa0462970:intron
CAAGCAAGTGTTTGTATGTG+TGG	0.499680	3_3:-62219365	Msa0462970:CDS
CAATATTACCATTCCATGTG+TGG	0.569497	3_3:+62226148	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAATACCTTGTCAAGA+AGG	-	chr3_3:62219444-62219463	Msa0462970:CDS	30.0%
ATATGAATAAGTGTGAACCA+TGG	-	chr3_3:62219509-62219528	Msa0462970:CDS	30.0%
TATGAATAAGTGTGAACCAT+GGG	-	chr3_3:62219510-62219529	Msa0462970:CDS	30.0%
ATGCAGTGTTTATTTGATTC+AGG	+	chr3_3:62219862-62219881	None:intergenic	30.0%
TAAACTAAGTCTTCTTTGGT+AGG	+	chr3_3:62219969-62219988	None:intergenic	30.0%
CACATAAACTAAGTCTTCTT+TGG	+	chr3_3:62219973-62219992	None:intergenic	30.0%
CAAAGAAGACTTAGTTTATG+TGG	-	chr3_3:62219971-62219990	Msa0462970:intron	30.0%
CTAAGGTGTAATTAAACCAT+TGG	+	chr3_3:62220141-62220160	None:intergenic	30.0%
AGATAACGACAATATCTCTA+AGG	+	chr3_3:62220158-62220177	None:intergenic	30.0%
TTGTCGTTATCTTACTTTGA+TGG	-	chr3_3:62220166-62220185	Msa0462970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	62219346	62227483	62219346	ID=Msa0462970;Name=Msa0462970
chr3_3	mRNA	62219346	62227483	62219346	ID=Msa0462970-mRNA-1;Parent=Msa0462970;Name=Msa0462970-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|1\|1\|1\|3\|0\|225
chr3_3	exon	62227288	62227483	62227288	ID=Msa0462970-mRNA-1:exon:13292;Parent=Msa0462970-mRNA-1
chr3_3	exon	62226157	62226323	62226157	ID=Msa0462970-mRNA-1:exon:13291;Parent=Msa0462970-mRNA-1
chr3_3	exon	62219346	62219660	62219346	ID=Msa0462970-mRNA-1:exon:13290;Parent=Msa0462970-mRNA-1
chr3_3	CDS	62227288	62227483	62227288	ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1
chr3_3	CDS	62226157	62226323	62226157	ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1
chr3_3	CDS	62219346	62219660	62219346	ID=Msa0462970-mRNA-1:cds;Parent=Msa0462970-mRNA-1

Gene Sequence

>Msa0462970

ATGGGATCAAATGAGAATGTTTACAATCAAAAAATGGAAAATGAAAAGGTCAAATTTCCGGCTGGTTATCGATTCTCTCCGACCGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAATTTCTGTGCTATAGATATTGCTGAAGTTGATATGAATAAGTGTGAACCATGGGATTTGCCAGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACAAAGGAAGAGCGCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGGCGGGTAACACACTCTCTGAGCACAACCTATCCACACATGGAATGGTAACAGTCGAAAGCCAGGCCTATCCCAAATCATGTTTCAAGTGTTCACACGGAGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAAGGCATTTTGTACTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTACAATCATCTTATCAAGTCTGCATCAATCAAACGTGCAGCAGCCTCTGTTCCAGAATCTCGAATGTTGGTGCCTTCTAATTATTGCCTTTGTTCTGTTTTGAAAGAAGAAGGTGTTTTGATCTTTCAAGCAAGTGTTTGTATGTGTGGTTTTCTTTTTCCTTCATAA

Protein sequence

>Msa0462970

MGSNENVYNQKMENEKVKFPAGYRFSPTDEELINQYLVKKVDDNNFCAIDIAEVDMNKCEPWDLPGKDKEIFKGNALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLAGNTLSEHNLSTHGMVTVESQAYPKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPESRMLVPSNYCLCSVLKEEGVLIFQASVCMCGFLFPS*