Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463920 | XP_003601024.1 | 92.606 | 284 | 10 | 1 | 1 | 284 | 1 | 273 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463920 | sp|Q9LYL9|Y3623_ARATH | 47.273 | 275 | 143 | 2 | 1 | 275 | 1 | 273 | 9.51e-84 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463920 | G7J2Y2 | 92.606 | 284 | 10 | 1 | 1 | 284 | 1 | 273 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0463920 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463920 | MtrunA17_Chr3g0114411 | 92.606 | 284 | 10 | 1 | 1 | 284 | 1 | 273 | 0.0 | 520 |
| Msa0463920 | MtrunA17_Chr3g0125321 | 27.228 | 202 | 138 | 4 | 73 | 269 | 39 | 236 | 3.45e-19 | 84.7 |
| Msa0463920 | MtrunA17_Chr5g0447111 | 31.847 | 157 | 103 | 3 | 88 | 244 | 142 | 294 | 3.34e-15 | 74.7 |
| Msa0463920 | MtrunA17_Chr3g0103031 | 32.353 | 170 | 103 | 5 | 77 | 244 | 134 | 293 | 3.60e-14 | 71.6 |
| Msa0463920 | MtrunA17_Chr1g0159831 | 32.414 | 145 | 93 | 3 | 98 | 242 | 154 | 293 | 6.63e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463920 | AT3G56230.1 | 47.273 | 275 | 143 | 2 | 1 | 275 | 1 | 273 | 9.67e-85 | 256 |
| Msa0463920 | AT1G01640.1 | 46.632 | 193 | 97 | 4 | 88 | 279 | 1 | 188 | 9.05e-54 | 174 |
| Msa0463920 | AT1G01640.2 | 47.674 | 172 | 84 | 4 | 109 | 279 | 1 | 167 | 2.88e-47 | 156 |
| Msa0463920 | AT2G40450.1 | 39.459 | 185 | 107 | 3 | 91 | 270 | 4 | 188 | 1.37e-26 | 103 |
| Msa0463920 | AT5G48510.1 | 37.222 | 180 | 109 | 3 | 100 | 275 | 13 | 192 | 9.22e-26 | 102 |
| Msa0463920 | AT4G04090.1 | 32.353 | 170 | 114 | 1 | 106 | 274 | 20 | 189 | 4.10e-24 | 96.7 |
| Msa0463920 | AT2G05330.1 | 37.063 | 143 | 88 | 2 | 130 | 270 | 34 | 176 | 2.32e-21 | 90.1 |
| Msa0463920 | AT4G08455.1 | 28.230 | 209 | 134 | 6 | 73 | 269 | 44 | 248 | 6.43e-19 | 84.7 |
| Msa0463920 | AT2G05330.2 | 37.121 | 132 | 81 | 2 | 141 | 270 | 1 | 132 | 1.13e-17 | 79.0 |
| Msa0463920 | AT3G29740.1 | 44.186 | 86 | 44 | 2 | 89 | 171 | 3 | 87 | 2.08e-13 | 65.1 |
| Msa0463920 | AT1G21780.2 | 32.414 | 145 | 93 | 3 | 98 | 242 | 148 | 287 | 2.59e-12 | 66.6 |
| Msa0463920 | AT1G21780.1 | 32.414 | 145 | 93 | 3 | 98 | 242 | 148 | 287 | 2.59e-12 | 66.6 |
| Msa0463920 | AT1G55760.1 | 34.752 | 141 | 81 | 5 | 107 | 244 | 160 | 292 | 9.28e-11 | 62.0 |
Find 44 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGGTCTTAATATTAA+TGG | 0.173482 | 3_3:+63495180 | None:intergenic |
| TTATAGAGAAATTGATAATT+TGG | 0.186682 | 3_3:+63493874 | None:intergenic |
| TGCACAAATGCTTCAAATTT+AGG | 0.193574 | 3_3:+63493950 | None:intergenic |
| ATTCTAATTCTTCATGGTTC+AGG | 0.311738 | 3_3:+63494227 | None:intergenic |
| TAGTGTCTCAAATGCATTAG+AGG | 0.315759 | 3_3:+63494060 | None:intergenic |
| CTCGAATTTCGCCGCGAAAT+AGG | 0.318434 | 3_3:+63495051 | None:intergenic |
| AGGATGTCTCCTTCAAATCT+TGG | 0.335688 | 3_3:+63494014 | None:intergenic |
| ACCTGCTCATAAATCCGTTT+TGG | 0.337217 | 3_3:-63494760 | Msa0463920:intron |
| CTACAGTGGGACATTGCCTT+TGG | 0.341122 | 3_3:-63494188 | Msa0463920:CDS |
| AGAGAGATTCTAATTCTTCA+TGG | 0.342558 | 3_3:+63494221 | None:intergenic |
| GCCCCACATATTGTATTCCT+TGG | 0.412240 | 3_3:+63495162 | None:intergenic |
| GGGCATGTTATGAAGGAGTT+AGG | 0.432141 | 3_3:-63495143 | Msa0463920:CDS |
| TGTGTGAATTTGTTCTTTGA+AGG | 0.437509 | 3_3:+63494821 | None:intergenic |
| GTTTCAAGAGCATTTGTGAA+TGG | 0.440008 | 3_3:-63493899 | Msa0463920:CDS |
| TTGTTCAAACCAAGATTTGA+AGG | 0.441270 | 3_3:-63494023 | Msa0463920:CDS |
| ACGGATTTATGAGCAGGTAT+AGG | 0.452650 | 3_3:+63494765 | None:intergenic |
| CCACATATTGTATTCCTTGG+AGG | 0.461630 | 3_3:+63495165 | None:intergenic |
| TTGATAAGTCCAGGCAATCT+TGG | 0.471602 | 3_3:-63494792 | Msa0463920:CDS |
| AAAACAATCACTACTCCAAA+TGG | 0.473612 | 3_3:-63495078 | Msa0463920:CDS |
| AATTCTTCATGGTTCAGGTC+AGG | 0.475170 | 3_3:+63494232 | None:intergenic |
| AGAGTTATTGTGTTACAAGT+TGG | 0.476255 | 3_3:+63494256 | None:intergenic |
| ATAGGTGGACCAAGATTGCC+TGG | 0.498249 | 3_3:+63494783 | None:intergenic |
| TCACAGTATTTCAGCAAATG+TGG | 0.504898 | 3_3:+63494109 | None:intergenic |
| CACAGTATTTCAGCAAATGT+GGG | 0.507721 | 3_3:+63494110 | None:intergenic |
| AATTTGAAGCATTTGTGCAT+AGG | 0.515796 | 3_3:-63493946 | Msa0463920:CDS |
| TTCGCGGCGAAATTCGAGTA+AGG | 0.516513 | 3_3:-63495046 | Msa0463920:CDS |
| CCTCCAAGGAATACAATATG+TGG | 0.523672 | 3_3:-63495165 | Msa0463920:CDS |
| ACCAAAACGGATTTATGAGC+AGG | 0.528361 | 3_3:+63494759 | None:intergenic |
| ATATGTGGGGCATGTTATGA+AGG | 0.533797 | 3_3:-63495150 | Msa0463920:CDS |
| TCTTAGAATTTCTCTACAGT+GGG | 0.539455 | 3_3:-63494201 | Msa0463920:CDS |
| CGCGAAATAGGAGAACCATT+TGG | 0.543566 | 3_3:+63495063 | None:intergenic |
| CAAGATTTGGCTTATCTCAG+AGG | 0.546377 | 3_3:-63494855 | Msa0463920:CDS |
| CAAATGGTTCTCCTATTTCG+CGG | 0.549333 | 3_3:-63495062 | Msa0463920:CDS |
| AAAACAAGAACTCACCAAAA+CGG | 0.553720 | 3_3:+63494746 | None:intergenic |
| ACAGATATATTGATAAGTCC+AGG | 0.558976 | 3_3:-63494801 | Msa0463920:CDS |
| CTCTTAGAATTTCTCTACAG+TGG | 0.583649 | 3_3:-63494202 | Msa0463920:CDS |
| CTCCAAGGAATACAATATGT+GGG | 0.586870 | 3_3:-63495164 | Msa0463920:CDS |
| CTTATCAGCTGCTTGTGACA+AGG | 0.589102 | 3_3:+63494141 | None:intergenic |
| CACTTGATGATTGCATAAGA+TGG | 0.603274 | 3_3:-63494914 | Msa0463920:CDS |
| GATTTATGAGCAGGTATAGG+TGG | 0.605249 | 3_3:+63494768 | None:intergenic |
| AGCATGATCAACATGATGAA+CGG | 0.624401 | 3_3:-63495120 | Msa0463920:CDS |
| CATTAATATTAAGACCTCCA+AGG | 0.644737 | 3_3:-63495179 | Msa0463920:CDS |
| TCCAAGGAATACAATATGTG+GGG | 0.668052 | 3_3:-63495163 | Msa0463920:CDS |
| ACTAATTGCACAGTTAAATG+CGG | 0.678765 | 3_3:+63493920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATGAAAATTATTTAAT+GGG | + | chr3_3:63494362-63494381 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_3:63494461-63494480 | Msa0463920:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_3:63495090-63495109 | None:intergenic | 10.0% |
| !! | GTTAATGAAAATTATTTAAT+GGG | + | chr3_3:63494362-63494381 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_3:63494461-63494480 | Msa0463920:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_3:63495090-63495109 | None:intergenic | 10.0% |
| !! | GGTTAATGAAAATTATTTAA+TGG | + | chr3_3:63494363-63494382 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_3:63494464-63494483 | Msa0463920:intron | 15.0% |
| !!! | TATTTTTTTGTTTACAAAGA+GGG | + | chr3_3:63494539-63494558 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGTTTACAAAG+AGG | + | chr3_3:63494540-63494559 | None:intergenic | 15.0% |
| !! | TATTTATGTTATTGTAATGT+AGG | - | chr3_3:63494746-63494765 | Msa0463920:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_3:63495210-63495229 | None:intergenic | 15.0% |
| !! | GGTTAATGAAAATTATTTAA+TGG | + | chr3_3:63494363-63494382 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_3:63494464-63494483 | Msa0463920:intron | 15.0% |
| !!! | TATTTTTTTGTTTACAAAGA+GGG | + | chr3_3:63494539-63494558 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGTTTACAAAG+AGG | + | chr3_3:63494540-63494559 | None:intergenic | 15.0% |
| !! | TATTTATGTTATTGTAATGT+AGG | - | chr3_3:63494746-63494765 | Msa0463920:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_3:63495210-63495229 | None:intergenic | 15.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_3:63494210-63494229 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_3:63494213-63494232 | Msa0463920:CDS | 20.0% |
| !! | AAAGCTTAAAAAAAATAAGC+TGG | - | chr3_3:63494617-63494636 | Msa0463920:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_3:63495100-63495119 | Msa0463920:CDS | 20.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_3:63494210-63494229 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_3:63494213-63494232 | Msa0463920:CDS | 20.0% |
| !! | AAAGCTTAAAAAAAATAAGC+TGG | - | chr3_3:63494617-63494636 | Msa0463920:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_3:63495100-63495119 | Msa0463920:CDS | 20.0% |
| !! | TTCTTTTCATAATGCTTCTA+TGG | - | chr3_3:63494068-63494087 | Msa0463920:CDS | 25.0% |
| ! | TCAAGTGTATAATCTAAAAG+AGG | - | chr3_3:63494114-63494133 | Msa0463920:CDS | 25.0% |
| !! | TTCTTTTCATAATGCTTCTA+TGG | - | chr3_3:63494068-63494087 | Msa0463920:CDS | 25.0% |
| ! | TCAAGTGTATAATCTAAAAG+AGG | - | chr3_3:63494114-63494133 | Msa0463920:CDS | 25.0% |
| CTTGGAGGTCTTAATATTAA+TGG | + | chr3_3:63493904-63493923 | None:intergenic | 30.0% | |
| CATTAATATTAAGACCTCCA+AGG | - | chr3_3:63493902-63493921 | Msa0463920:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_3:63494003-63494022 | Msa0463920:CDS | 30.0% | |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_3:63494263-63494282 | None:intergenic | 30.0% |
| ACAGATATATTGATAAGTCC+AGG | - | chr3_3:63494280-63494299 | Msa0463920:CDS | 30.0% | |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_3:63494338-63494357 | None:intergenic | 30.0% | |
| !!! | TCTCGGTGTAGTTTTTTTTT+TGG | - | chr3_3:63494505-63494524 | Msa0463920:intron | 30.0% |
| !!! | CTCGGTGTAGTTTTTTTTTT+GGG | - | chr3_3:63494506-63494525 | Msa0463920:intron | 30.0% |
| AGAGTTATTGTGTTACAAGT+TGG | + | chr3_3:63494828-63494847 | None:intergenic | 30.0% | |
| ATTCTAATTCTTCATGGTTC+AGG | + | chr3_3:63494857-63494876 | None:intergenic | 30.0% | |
| AGAGAGATTCTAATTCTTCA+TGG | + | chr3_3:63494863-63494882 | None:intergenic | 30.0% | |
| TCTTAGAATTTCTCTACAGT+GGG | - | chr3_3:63494880-63494899 | Msa0463920:CDS | 30.0% | |
| ! | TGTTTCTCCAATTTTTCCAA+AGG | + | chr3_3:63494912-63494931 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_3:63495058-63495077 | Msa0463920:CDS | 30.0% | |
| TGCACAAATGCTTCAAATTT+AGG | + | chr3_3:63495134-63495153 | None:intergenic | 30.0% | |
| ! | AATTTGAAGCATTTGTGCAT+AGG | - | chr3_3:63495135-63495154 | Msa0463920:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+CGG | + | chr3_3:63495164-63495183 | None:intergenic | 30.0% | |
| CTTGGAGGTCTTAATATTAA+TGG | + | chr3_3:63493904-63493923 | None:intergenic | 30.0% | |
| CATTAATATTAAGACCTCCA+AGG | - | chr3_3:63493902-63493921 | Msa0463920:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_3:63494003-63494022 | Msa0463920:CDS | 30.0% | |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_3:63494263-63494282 | None:intergenic | 30.0% |
| ACAGATATATTGATAAGTCC+AGG | - | chr3_3:63494280-63494299 | Msa0463920:CDS | 30.0% | |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_3:63494338-63494357 | None:intergenic | 30.0% | |
| !!! | TCTCGGTGTAGTTTTTTTTT+TGG | - | chr3_3:63494505-63494524 | Msa0463920:intron | 30.0% |
| !!! | CTCGGTGTAGTTTTTTTTTT+GGG | - | chr3_3:63494506-63494525 | Msa0463920:intron | 30.0% |
| AGAGTTATTGTGTTACAAGT+TGG | + | chr3_3:63494828-63494847 | None:intergenic | 30.0% | |
| ATTCTAATTCTTCATGGTTC+AGG | + | chr3_3:63494857-63494876 | None:intergenic | 30.0% | |
| AGAGAGATTCTAATTCTTCA+TGG | + | chr3_3:63494863-63494882 | None:intergenic | 30.0% | |
| TCTTAGAATTTCTCTACAGT+GGG | - | chr3_3:63494880-63494899 | Msa0463920:CDS | 30.0% | |
| ! | TGTTTCTCCAATTTTTCCAA+AGG | + | chr3_3:63494912-63494931 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_3:63495058-63495077 | Msa0463920:CDS | 30.0% | |
| TGCACAAATGCTTCAAATTT+AGG | + | chr3_3:63495134-63495153 | None:intergenic | 30.0% | |
| ! | AATTTGAAGCATTTGTGCAT+AGG | - | chr3_3:63495135-63495154 | Msa0463920:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+CGG | + | chr3_3:63495164-63495183 | None:intergenic | 30.0% | |
| CTCCAAGGAATACAATATGT+GGG | - | chr3_3:63493917-63493936 | Msa0463920:CDS | 35.0% | |
| TCCAAGGAATACAATATGTG+GGG | - | chr3_3:63493918-63493937 | Msa0463920:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_3:63493961-63493980 | Msa0463920:CDS | 35.0% | |
| ! | CACTTGATGATTGCATAAGA+TGG | - | chr3_3:63494167-63494186 | Msa0463920:CDS | 35.0% |
| CTCTTAGAATTTCTCTACAG+TGG | - | chr3_3:63494879-63494898 | Msa0463920:CDS | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_3:63494902-63494921 | Msa0463920:CDS | 35.0% |
| CACAGTATTTCAGCAAATGT+GGG | + | chr3_3:63494974-63494993 | None:intergenic | 35.0% | |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_3:63494975-63494994 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_3:63495024-63495043 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_3:63495182-63495201 | Msa0463920:CDS | 35.0% |
| CTCCAAGGAATACAATATGT+GGG | - | chr3_3:63493917-63493936 | Msa0463920:CDS | 35.0% | |
| TCCAAGGAATACAATATGTG+GGG | - | chr3_3:63493918-63493937 | Msa0463920:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_3:63493961-63493980 | Msa0463920:CDS | 35.0% | |
| ! | CACTTGATGATTGCATAAGA+TGG | - | chr3_3:63494167-63494186 | Msa0463920:CDS | 35.0% |
| CTCTTAGAATTTCTCTACAG+TGG | - | chr3_3:63494879-63494898 | Msa0463920:CDS | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_3:63494902-63494921 | Msa0463920:CDS | 35.0% |
| CACAGTATTTCAGCAAATGT+GGG | + | chr3_3:63494974-63494993 | None:intergenic | 35.0% | |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_3:63494975-63494994 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_3:63495024-63495043 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_3:63495182-63495201 | Msa0463920:CDS | 35.0% |
| CCACATATTGTATTCCTTGG+AGG | + | chr3_3:63493919-63493938 | None:intergenic | 40.0% | |
| CCTCCAAGGAATACAATATG+TGG | - | chr3_3:63493916-63493935 | Msa0463920:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_3:63493931-63493950 | Msa0463920:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_3:63494019-63494038 | Msa0463920:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_3:63494226-63494245 | Msa0463920:CDS | 40.0% |
| TTGATAAGTCCAGGCAATCT+TGG | - | chr3_3:63494289-63494308 | Msa0463920:CDS | 40.0% | |
| GATTTATGAGCAGGTATAGG+TGG | + | chr3_3:63494316-63494335 | None:intergenic | 40.0% | |
| ACGGATTTATGAGCAGGTAT+AGG | + | chr3_3:63494319-63494338 | None:intergenic | 40.0% | |
| ! | ACCTGCTCATAAATCCGTTT+TGG | - | chr3_3:63494321-63494340 | Msa0463920:intron | 40.0% |
| ! | ACCAAAACGGATTTATGAGC+AGG | + | chr3_3:63494325-63494344 | None:intergenic | 40.0% |
| TTCTGTCTCACGATTGATCT+CGG | - | chr3_3:63494488-63494507 | Msa0463920:intron | 40.0% | |
| AATTCTTCATGGTTCAGGTC+AGG | + | chr3_3:63494852-63494871 | None:intergenic | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_3:63495070-63495089 | None:intergenic | 40.0% | |
| CCACATATTGTATTCCTTGG+AGG | + | chr3_3:63493919-63493938 | None:intergenic | 40.0% | |
| CCTCCAAGGAATACAATATG+TGG | - | chr3_3:63493916-63493935 | Msa0463920:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_3:63493931-63493950 | Msa0463920:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_3:63494019-63494038 | Msa0463920:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_3:63494226-63494245 | Msa0463920:CDS | 40.0% |
| TTGATAAGTCCAGGCAATCT+TGG | - | chr3_3:63494289-63494308 | Msa0463920:CDS | 40.0% | |
| GATTTATGAGCAGGTATAGG+TGG | + | chr3_3:63494316-63494335 | None:intergenic | 40.0% | |
| ACGGATTTATGAGCAGGTAT+AGG | + | chr3_3:63494319-63494338 | None:intergenic | 40.0% | |
| ! | ACCTGCTCATAAATCCGTTT+TGG | - | chr3_3:63494321-63494340 | Msa0463920:intron | 40.0% |
| ! | ACCAAAACGGATTTATGAGC+AGG | + | chr3_3:63494325-63494344 | None:intergenic | 40.0% |
| TTCTGTCTCACGATTGATCT+CGG | - | chr3_3:63494488-63494507 | Msa0463920:intron | 40.0% | |
| AATTCTTCATGGTTCAGGTC+AGG | + | chr3_3:63494852-63494871 | None:intergenic | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_3:63495070-63495089 | None:intergenic | 40.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_3:63493922-63493941 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_3:63493938-63493957 | Msa0463920:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_3:63494021-63494040 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_3:63494160-63494179 | None:intergenic | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_3:63494943-63494962 | None:intergenic | 45.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_3:63493922-63493941 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_3:63493938-63493957 | Msa0463920:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_3:63494021-63494040 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_3:63494160-63494179 | None:intergenic | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_3:63494943-63494962 | None:intergenic | 45.0% | |
| !!! | AAATTTTAAATATTAAAGAA+TGG | + | chr3_3:63494384-63494403 | None:intergenic | 5.0% |
| !!! | AAATTTTAAATATTAAAGAA+TGG | + | chr3_3:63494384-63494403 | None:intergenic | 5.0% |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_3:63494033-63494052 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_3:63494035-63494054 | Msa0463920:CDS | 50.0% | |
| ATAGGTGGACCAAGATTGCC+TGG | + | chr3_3:63494301-63494320 | None:intergenic | 50.0% | |
| CTACAGTGGGACATTGCCTT+TGG | - | chr3_3:63494893-63494912 | Msa0463920:CDS | 50.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_3:63494033-63494052 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_3:63494035-63494054 | Msa0463920:CDS | 50.0% | |
| ATAGGTGGACCAAGATTGCC+TGG | + | chr3_3:63494301-63494320 | None:intergenic | 50.0% | |
| CTACAGTGGGACATTGCCTT+TGG | - | chr3_3:63494893-63494912 | Msa0463920:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 63493874 | 63495229 | 63493874 | ID=Msa0463920;Name=Msa0463920 |
| chr3_3 | mRNA | 63493874 | 63495229 | 63493874 | ID=Msa0463920-mRNA-1;Parent=Msa0463920;Name=Msa0463920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|284 |
| chr3_3 | exon | 63495014 | 63495229 | 63495014 | ID=Msa0463920-mRNA-1:exon:13847;Parent=Msa0463920-mRNA-1 |
| chr3_3 | exon | 63494761 | 63494937 | 63494761 | ID=Msa0463920-mRNA-1:exon:13846;Parent=Msa0463920-mRNA-1 |
| chr3_3 | exon | 63493874 | 63494335 | 63493874 | ID=Msa0463920-mRNA-1:exon:13845;Parent=Msa0463920-mRNA-1 |
| chr3_3 | CDS | 63495014 | 63495229 | 63495014 | ID=Msa0463920-mRNA-1:cds;Parent=Msa0463920-mRNA-1 |
| chr3_3 | CDS | 63494761 | 63494937 | 63494761 | ID=Msa0463920-mRNA-1:cds;Parent=Msa0463920-mRNA-1 |
| chr3_3 | CDS | 63493874 | 63494335 | 63493874 | ID=Msa0463920-mRNA-1:cds;Parent=Msa0463920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
