AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464770 MtrunA17_Chr3g0116501 92.500 200 15 0 35 234 1 200 1.78e-138 389
Msa0464770 MtrunA17_Chr4g0058071 55.596 277 120 2 8 281 59 335 3.79e-111 326
Msa0464770 MtrunA17_Chr5g0401281 39.062 256 155 1 7 261 108 363 2.83e-65 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464770 AT3G48360.1 48.708 271 128 3 8 267 80 350 1.10e-84 259
Msa0464770 AT5G63160.1 47.651 298 144 4 3 291 65 359 2.05e-82 253
Msa0464770 AT3G48360.3 50.000 244 111 3 35 267 1 244 1.57e-75 232
Msa0464770 AT3G48360.2 49.789 237 109 2 8 234 80 316 2.23e-75 234
Msa0464770 AT5G63160.2 49.167 240 114 2 3 234 65 304 2.67e-74 231
Msa0464770 AT5G63160.3 48.519 270 127 4 31 291 8 274 4.44e-74 229
Msa0464770 AT4G37610.1 39.535 258 151 5 7 261 96 351 2.43e-59 194
Msa0464770 AT1G05690.1 39.209 278 161 5 5 278 91 364 5.87e-59 193
Msa0464770 AT5G67480.1 38.911 257 153 4 8 261 102 357 2.67e-58 191
Msa0464770 AT5G67480.3 38.911 257 153 4 8 261 102 357 2.67e-58 191
Msa0464770 AT5G67480.2 38.911 257 153 4 8 261 113 368 3.49e-58 191

Find 80 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCAAAATTAT+TGG 0.124222 3_3:+64929304 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3_3:-64928961 Msa0464770:CDS
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3_3:+64929433 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.308788 3_3:-64928824 Msa0464770:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3_3:-64929733 Msa0464770:intron
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3_3:+64929399 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3_3:-64929003 Msa0464770:CDS
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3_3:-64929060 Msa0464770:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3_3:+64929434 None:intergenic
ACACACTTGAAGTAGAGATT+TGG 0.400686 3_3:+64929338 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3_3:-64928929 Msa0464770:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3_3:-64928047 Msa0464770:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3_3:-64929002 Msa0464770:CDS
TGGGACTATGCAGGTGCAGC+AGG 0.411993 3_3:-64929514 Msa0464770:intron
CCTTGTCCTTAGCAATTGTA+AGG 0.421710 3_3:+64928116 None:intergenic
CAAGGAGAGATGAGGTAATT+CGG 0.427024 3_3:-64928098 Msa0464770:CDS
GAGGAACCTTGCATGCATCT+TGG 0.458524 3_3:+64928832 None:intergenic
GAAGAGAGGAAATAAACATA+GGG 0.473780 3_3:-64929108 Msa0464770:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3_3:-64929109 Msa0464770:CDS
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3_3:-64928076 Msa0464770:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3_3:-64928044 Msa0464770:CDS
AACGGTAACGTTAAAATATG+TGG 0.514946 3_3:-64929785 Msa0464770:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3_3:+64929758 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3_3:-64928960 Msa0464770:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3_3:-64929404 Msa0464770:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3_3:-64929262 Msa0464770:CDS
TACGAGGTGGAAACAAATAG+TGG 0.546964 3_3:-64928169 Msa0464770:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3_3:+64929754 None:intergenic
CTTTAACCAAGATGCATGCA+AGG 0.552171 3_3:-64928838 Msa0464770:CDS
CCTTACAATTGCTAAGGACA+AGG 0.552243 3_3:-64928116 Msa0464770:CDS
TCTCAACAAAGAACGAGAAT+CGG 0.559033 3_3:-64929219 Msa0464770:intron
ATTCTCGTTCTTTGTTGAGA+CGG 0.562147 3_3:+64929222 None:intergenic
TGTCTTCCTTACAATTGCTA+AGG 0.563853 3_3:-64928122 Msa0464770:CDS
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3_3:-64928959 Msa0464770:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3_3:-64928199 Msa0464770:CDS
TTGGAGCATATATGTAGAGA+AGG 0.575989 3_3:-64929041 Msa0464770:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3_3:+64929245 None:intergenic
ATCTTGGTTAAAGCAAATGC+AGG 0.576779 3_3:+64928848 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3_3:-64929396 Msa0464770:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3_3:-64928915 Msa0464770:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3_3:+64929246 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3_3:-64929803 None:intergenic
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3_3:-64928168 Msa0464770:CDS
TGTGGTGGATGTGTTGCACT+TGG 0.594113 3_3:-64929378 Msa0464770:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3_3:+64928959 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3_3:+64928813 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3_3:-64929439 Msa0464770:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3_3:+64928131 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.603513 3_3:-64929293 Msa0464770:CDS
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3_3:-64928195 Msa0464770:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3_3:-64929012 Msa0464770:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3_3:-64928082 Msa0464770:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3_3:+64928920 None:intergenic
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3_3:-64928908 Msa0464770:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3_3:-64929105 Msa0464770:CDS
CTTGATCCAATTCATGACCA+CGG 0.630679 3_3:-64929405 Msa0464770:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3_3:-64929001 Msa0464770:CDS
TAGCAATTGTAAGGAAGACA+TGG 0.634002 3_3:+64928125 None:intergenic
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3_3:-64928890 Msa0464770:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3_3:-64929122 Msa0464770:intron
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3_3:-64929289 Msa0464770:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3_3:+64929739 None:intergenic
GCTAAGGACAAGGAGAGATG+AGG 0.655281 3_3:-64928106 Msa0464770:CDS
GGGACTATGCAGGTGCAGCA+GGG 0.659269 3_3:-64929513 Msa0464770:intron
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3_3:-64928182 Msa0464770:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3_3:+64928975 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3_3:+64929013 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3_3:+64929745 None:intergenic
CATGACCACGGGGAATGTGG+TGG 0.668455 3_3:-64929393 Msa0464770:CDS
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3_3:-64928914 Msa0464770:CDS
TGAAGCGGTGAAGGAAACAG+AGG 0.678822 3_3:-64929294 Msa0464770:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3_3:-64928167 Msa0464770:CDS
TAGAGAAGGTTGCACCAACG+TGG 0.699752 3_3:-64929027 Msa0464770:CDS
CACATCCACCACATTCCCCG+TGG 0.715239 3_3:+64929388 None:intergenic
AGACGTGCGAGAGTACGAGA+AGG 0.721408 3_3:+64929465 None:intergenic
ACTATGCAGGTGCAGCAGGG+AGG 0.723689 3_3:-64929510 Msa0464770:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3_3:-64928185 Msa0464770:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3_3:-64928998 Msa0464770:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.769201 3_3:-64929292 Msa0464770:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3_3:-64929403 Msa0464770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGAATTAACAAATTTTT+TGG - chr3_3:64928146-64928165 Msa0464770:CDS 10.0%
!!! ACATTTTTTCATATAAAAAA+AGG - chr3_3:64929045-64929064 Msa0464770:CDS 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3_3:64928146-64928165 Msa0464770:CDS 10.0%
!!! ACATTTTTTCATATAAAAAA+AGG - chr3_3:64929045-64929064 Msa0464770:CDS 10.0%
!! TATATATTTCTTTAGTAAGT+TGG - chr3_3:64928656-64928675 Msa0464770:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_3:64929145-64929164 Msa0464770:intron 15.0%
!! TATATATTTCTTTAGTAAGT+TGG - chr3_3:64928656-64928675 Msa0464770:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_3:64929145-64929164 Msa0464770:intron 15.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_3:64929535-64929554 Msa0464770:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_3:64929563-64929582 Msa0464770:intron 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_3:64929535-64929554 Msa0464770:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_3:64929563-64929582 Msa0464770:intron 20.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_3:64928167-64928186 Msa0464770:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_3:64928499-64928518 Msa0464770:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_3:64929070-64929089 Msa0464770:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_3:64929243-64929262 Msa0464770:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_3:64929314-64929333 Msa0464770:CDS 25.0%
!!! CTAGTTACTAGTTTTCATTT+AGG - chr3_3:64929534-64929553 Msa0464770:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_3:64929542-64929561 Msa0464770:intron 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_3:64928167-64928186 Msa0464770:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_3:64928499-64928518 Msa0464770:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_3:64929070-64929089 Msa0464770:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_3:64929243-64929262 Msa0464770:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_3:64929314-64929333 Msa0464770:CDS 25.0%
!!! CTAGTTACTAGTTTTCATTT+AGG - chr3_3:64929534-64929553 Msa0464770:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_3:64929542-64929561 Msa0464770:intron 25.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_3:64928024-64928043 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_3:64928023-64928042 Msa0464770:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_3:64928072-64928091 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_3:64928096-64928115 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_3:64928256-64928275 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_3:64928254-64928273 Msa0464770:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_3:64928283-64928302 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_3:64928314-64928333 Msa0464770:intron 30.0%
!! TTCTTTAGTAAGTTGGTGAT+CGG - chr3_3:64928663-64928682 Msa0464770:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_3:64928699-64928718 Msa0464770:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_3:64928700-64928719 Msa0464770:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_3:64928805-64928824 Msa0464770:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_3:64928879-64928898 Msa0464770:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_3:64929233-64929252 Msa0464770:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_3:64929316-64929335 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_3:64929313-64929332 Msa0464770:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_3:64929329-64929348 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_3:64929376-64929395 Msa0464770:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_3:64929377-64929396 Msa0464770:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_3:64929487-64929506 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_3:64929575-64929594 Msa0464770:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_3:64929788-64929807 Msa0464770:CDS 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_3:64928024-64928043 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_3:64928023-64928042 Msa0464770:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_3:64928072-64928091 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_3:64928096-64928115 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_3:64928256-64928275 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_3:64928254-64928273 Msa0464770:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_3:64928283-64928302 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_3:64928314-64928333 Msa0464770:intron 30.0%
!! TTCTTTAGTAAGTTGGTGAT+CGG - chr3_3:64928663-64928682 Msa0464770:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_3:64928699-64928718 Msa0464770:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_3:64928700-64928719 Msa0464770:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_3:64928805-64928824 Msa0464770:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_3:64928879-64928898 Msa0464770:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_3:64929233-64929252 Msa0464770:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_3:64929316-64929335 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_3:64929313-64929332 Msa0464770:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_3:64929329-64929348 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_3:64929376-64929395 Msa0464770:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_3:64929377-64929396 Msa0464770:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_3:64929487-64929506 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_3:64929575-64929594 Msa0464770:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_3:64929788-64929807 Msa0464770:CDS 30.0%
TACATTTCATCTACACTTCC+AGG - chr3_3:64928075-64928094 Msa0464770:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_3:64928247-64928266 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_3:64928248-64928267 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_3:64928284-64928303 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_3:64928377-64928396 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_3:64928378-64928397 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_3:64928473-64928492 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_3:64928507-64928526 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_3:64928505-64928524 Msa0464770:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_3:64928546-64928565 Msa0464770:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_3:64928589-64928608 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_3:64928589-64928608 Msa0464770:intron 35.0%
!! TCTTTAGTAAGTTGGTGATC+GGG - chr3_3:64928664-64928683 Msa0464770:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_3:64928748-64928767 Msa0464770:intron 35.0%
TTGGAGCATATATGTAGAGA+AGG - chr3_3:64928767-64928786 Msa0464770:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_3:64928806-64928825 Msa0464770:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_3:64928836-64928855 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_3:64928963-64928982 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_3:64929403-64929422 Msa0464770:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_3:64929420-64929439 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_3:64929421-64929440 Msa0464770:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_3:64929686-64929705 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_3:64929686-64929705 Msa0464770:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_3:64929726-64929745 Msa0464770:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_3:64929761-64929780 Msa0464770:CDS 35.0%
TACATTTCATCTACACTTCC+AGG - chr3_3:64928075-64928094 Msa0464770:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_3:64928247-64928266 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_3:64928248-64928267 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_3:64928284-64928303 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_3:64928377-64928396 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_3:64928378-64928397 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_3:64928473-64928492 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_3:64928507-64928526 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_3:64928505-64928524 Msa0464770:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_3:64928546-64928565 Msa0464770:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_3:64928589-64928608 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_3:64928589-64928608 Msa0464770:intron 35.0%
!! TCTTTAGTAAGTTGGTGATC+GGG - chr3_3:64928664-64928683 Msa0464770:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_3:64928748-64928767 Msa0464770:intron 35.0%
TTGGAGCATATATGTAGAGA+AGG - chr3_3:64928767-64928786 Msa0464770:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_3:64928806-64928825 Msa0464770:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_3:64928836-64928855 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_3:64928963-64928982 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_3:64929403-64929422 Msa0464770:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_3:64929420-64929439 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_3:64929421-64929440 Msa0464770:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_3:64929686-64929705 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_3:64929686-64929705 Msa0464770:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_3:64929726-64929745 Msa0464770:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_3:64929761-64929780 Msa0464770:CDS 35.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_3:64928066-64928085 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_3:64928274-64928293 Msa0464770:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_3:64928275-64928294 Msa0464770:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_3:64928285-64928304 Msa0464770:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_3:64928369-64928388 Msa0464770:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_3:64928403-64928422 Msa0464770:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_3:64928404-64928423 Msa0464770:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_3:64928703-64928722 Msa0464770:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_3:64928807-64928826 Msa0464770:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_3:64928918-64928937 Msa0464770:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_3:64928970-64928989 Msa0464770:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_3:64929356-64929375 Msa0464770:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_3:64929609-64929628 Msa0464770:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_3:64929639-64929658 Msa0464770:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_3:64929640-64929659 Msa0464770:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_3:64929680-64929699 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_3:64929695-64929714 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_3:64929692-64929711 Msa0464770:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_3:64929710-64929729 Msa0464770:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_3:64929732-64929751 Msa0464770:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_3:64929764-64929783 Msa0464770:CDS 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_3:64928066-64928085 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_3:64928274-64928293 Msa0464770:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_3:64928275-64928294 Msa0464770:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_3:64928285-64928304 Msa0464770:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_3:64928369-64928388 Msa0464770:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_3:64928403-64928422 Msa0464770:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_3:64928404-64928423 Msa0464770:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_3:64928703-64928722 Msa0464770:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_3:64928807-64928826 Msa0464770:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_3:64928918-64928937 Msa0464770:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_3:64928970-64928989 Msa0464770:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_3:64929356-64929375 Msa0464770:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_3:64929609-64929628 Msa0464770:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_3:64929639-64929658 Msa0464770:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_3:64929640-64929659 Msa0464770:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_3:64929680-64929699 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_3:64929695-64929714 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_3:64929692-64929711 Msa0464770:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_3:64929710-64929729 Msa0464770:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_3:64929732-64929751 Msa0464770:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_3:64929764-64929783 Msa0464770:CDS 40.0%
TGATCCAATTCATGACCACG+GGG - chr3_3:64928405-64928424 Msa0464770:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_3:64928565-64928584 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_3:64928566-64928585 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_3:64928686-64928705 Msa0464770:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_3:64928798-64928817 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_3:64928796-64928815 Msa0464770:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_3:64928848-64928867 Msa0464770:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_3:64928891-64928910 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_3:64928893-64928912 Msa0464770:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_3:64928894-64928913 Msa0464770:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_3:64928998-64929017 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_3:64929613-64929632 Msa0464770:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_3:64929623-64929642 Msa0464770:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_3:64929641-64929660 Msa0464770:intron 45.0%
TGATCCAATTCATGACCACG+GGG - chr3_3:64928405-64928424 Msa0464770:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_3:64928565-64928584 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_3:64928566-64928585 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_3:64928686-64928705 Msa0464770:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_3:64928798-64928817 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_3:64928796-64928815 Msa0464770:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_3:64928848-64928867 Msa0464770:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_3:64928891-64928910 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_3:64928893-64928912 Msa0464770:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_3:64928894-64928913 Msa0464770:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_3:64928998-64929017 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_3:64929613-64929632 Msa0464770:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_3:64929623-64929642 Msa0464770:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_3:64929641-64929660 Msa0464770:intron 45.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_3:64928057-64928076 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_3:64928412-64928431 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_3:64928412-64928431 Msa0464770:intron 50.0%
!! TGTGGTGGATGTGTTGCACT+TGG - chr3_3:64928430-64928449 Msa0464770:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_3:64928514-64928533 Msa0464770:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_3:64928515-64928534 Msa0464770:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_3:64928516-64928535 Msa0464770:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_3:64928675-64928694 Msa0464770:intron 50.0%
TAGAGAAGGTTGCACCAACG+TGG - chr3_3:64928781-64928800 Msa0464770:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_3:64928810-64928829 Msa0464770:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_3:64928847-64928866 Msa0464770:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_3:64928849-64928868 Msa0464770:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_3:64928979-64928998 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_3:64928984-64929003 Msa0464770:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_3:64929626-64929645 Msa0464770:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_3:64929702-64929721 Msa0464770:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_3:64928057-64928076 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_3:64928412-64928431 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_3:64928412-64928431 Msa0464770:intron 50.0%
!! TGTGGTGGATGTGTTGCACT+TGG - chr3_3:64928430-64928449 Msa0464770:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_3:64928514-64928533 Msa0464770:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_3:64928515-64928534 Msa0464770:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_3:64928516-64928535 Msa0464770:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_3:64928675-64928694 Msa0464770:intron 50.0%
TAGAGAAGGTTGCACCAACG+TGG - chr3_3:64928781-64928800 Msa0464770:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_3:64928810-64928829 Msa0464770:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_3:64928847-64928866 Msa0464770:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_3:64928849-64928868 Msa0464770:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_3:64928979-64928998 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_3:64928984-64929003 Msa0464770:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_3:64929626-64929645 Msa0464770:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_3:64929702-64929721 Msa0464770:intron 50.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_3:64928053-64928072 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_3:64928346-64928365 None:intergenic 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_3:64928852-64928871 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_3:64928053-64928072 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_3:64928346-64928365 None:intergenic 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_3:64928852-64928871 None:intergenic 55.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_3:64928294-64928313 Msa0464770:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_3:64928295-64928314 Msa0464770:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_3:64928298-64928317 Msa0464770:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_3:64928415-64928434 Msa0464770:intron 60.0%
CACATCCACCACATTCCCCG+TGG + chr3_3:64928423-64928442 None:intergenic 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_3:64928519-64928538 Msa0464770:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_3:64928900-64928919 Msa0464770:CDS 60.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_3:64928294-64928313 Msa0464770:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_3:64928295-64928314 Msa0464770:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_3:64928298-64928317 Msa0464770:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_3:64928415-64928434 Msa0464770:intron 60.0%
CACATCCACCACATTCCCCG+TGG + chr3_3:64928423-64928442 None:intergenic 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_3:64928519-64928538 Msa0464770:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_3:64928900-64928919 Msa0464770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 64928011 64929819 64928011 ID=Msa0464770;Name=Msa0464770
chr3_3 mRNA 64928011 64929819 64928011 ID=Msa0464770-mRNA-1;Parent=Msa0464770;Name=Msa0464770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|307
chr3_3 exon 64929734 64929819 64929734 ID=Msa0464770-mRNA-1:exon:14369;Parent=Msa0464770-mRNA-1
chr3_3 exon 64929220 64929523 64929220 ID=Msa0464770-mRNA-1:exon:14368;Parent=Msa0464770-mRNA-1
chr3_3 exon 64928825 64929135 64928825 ID=Msa0464770-mRNA-1:exon:14367;Parent=Msa0464770-mRNA-1
chr3_3 exon 64928011 64928233 64928011 ID=Msa0464770-mRNA-1:exon:14366;Parent=Msa0464770-mRNA-1
chr3_3 CDS 64929734 64929819 64929734 ID=Msa0464770-mRNA-1:cds;Parent=Msa0464770-mRNA-1
chr3_3 CDS 64929220 64929523 64929220 ID=Msa0464770-mRNA-1:cds;Parent=Msa0464770-mRNA-1
chr3_3 CDS 64928825 64929135 64928825 ID=Msa0464770-mRNA-1:cds;Parent=Msa0464770-mRNA-1
chr3_3 CDS 64928011 64928233 64928011 ID=Msa0464770-mRNA-1:cds;Parent=Msa0464770-mRNA-1
Gene Sequence

>Msa0464770

ATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTGCAGCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCACGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGATGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTCAAGTGTGTCAAGTTAGTTACCAATAATTTTGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACGAGAATCGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTAGAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCCTGCATTTGCTTTAACCAAGATGCATGCAAGGTTCCTCTTTGCAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGGACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCATGTTTTCGGTGTATCTAA

Protein sequence

>Msa0464770

MVTSNGNVKICGVPTNAAIAFVHFIYTSRCSREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYFKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKERESRKKRGNKHREEQKLFVQLSEAVQCLEHICREGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDACKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIACFRCI*