AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464870 MtrunA17_Chr3g0116501 92.500 200 15 0 35 234 1 200 1.78e-138 389
Msa0464870 MtrunA17_Chr4g0058071 55.596 277 120 2 8 281 59 335 3.79e-111 326
Msa0464870 MtrunA17_Chr5g0401281 39.062 256 155 1 7 261 108 363 2.83e-65 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464870 AT3G48360.1 48.708 271 128 3 8 267 80 350 1.10e-84 259
Msa0464870 AT5G63160.1 47.651 298 144 4 3 291 65 359 2.05e-82 253
Msa0464870 AT3G48360.3 50.000 244 111 3 35 267 1 244 1.57e-75 232
Msa0464870 AT3G48360.2 49.789 237 109 2 8 234 80 316 2.23e-75 234
Msa0464870 AT5G63160.2 49.167 240 114 2 3 234 65 304 2.67e-74 231
Msa0464870 AT5G63160.3 48.519 270 127 4 31 291 8 274 4.44e-74 229
Msa0464870 AT4G37610.1 39.535 258 151 5 7 261 96 351 2.43e-59 194
Msa0464870 AT1G05690.1 39.209 278 161 5 5 278 91 364 5.87e-59 193
Msa0464870 AT5G67480.1 38.911 257 153 4 8 261 102 357 2.67e-58 191
Msa0464870 AT5G67480.3 38.911 257 153 4 8 261 102 357 2.67e-58 191
Msa0464870 AT5G67480.2 38.911 257 153 4 8 261 113 368 3.49e-58 191

Find 80 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCAAAATTAT+TGG 0.124222 3_3:+65078153 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3_3:-65077810 Msa0464870:CDS
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3_3:+65078282 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.308788 3_3:-65077673 Msa0464870:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3_3:-65078582 Msa0464870:intron
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3_3:+65078248 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3_3:-65077852 Msa0464870:CDS
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3_3:-65077909 Msa0464870:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3_3:+65078283 None:intergenic
ACACACTTGAAGTAGAGATT+TGG 0.400686 3_3:+65078187 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3_3:-65077778 Msa0464870:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3_3:-65076896 Msa0464870:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3_3:-65077851 Msa0464870:CDS
TGGGACTATGCAGGTGCAGC+AGG 0.411993 3_3:-65078363 Msa0464870:intron
CCTTGTCCTTAGCAATTGTA+AGG 0.421710 3_3:+65076965 None:intergenic
CAAGGAGAGATGAGGTAATT+CGG 0.427024 3_3:-65076947 Msa0464870:CDS
GAGGAACCTTGCATGCATCT+TGG 0.458524 3_3:+65077681 None:intergenic
GAAGAGAGGAAATAAACATA+GGG 0.473780 3_3:-65077957 Msa0464870:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3_3:-65077958 Msa0464870:CDS
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3_3:-65076925 Msa0464870:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3_3:-65076893 Msa0464870:CDS
AACGGTAACGTTAAAATATG+TGG 0.514946 3_3:-65078634 Msa0464870:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3_3:+65078607 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3_3:-65077809 Msa0464870:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3_3:-65078253 Msa0464870:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3_3:-65078111 Msa0464870:CDS
TACGAGGTGGAAACAAATAG+TGG 0.546964 3_3:-65077018 Msa0464870:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3_3:+65078603 None:intergenic
CTTTAACCAAGATGCATGCA+AGG 0.552171 3_3:-65077687 Msa0464870:CDS
CCTTACAATTGCTAAGGACA+AGG 0.552243 3_3:-65076965 Msa0464870:CDS
TCTCAACAAAGAACGAGAAT+CGG 0.559033 3_3:-65078068 Msa0464870:intron
ATTCTCGTTCTTTGTTGAGA+CGG 0.562147 3_3:+65078071 None:intergenic
TGTCTTCCTTACAATTGCTA+AGG 0.563853 3_3:-65076971 Msa0464870:CDS
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3_3:-65077808 Msa0464870:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3_3:-65077048 Msa0464870:CDS
TTGGAGCATATATGTAGAGA+AGG 0.575989 3_3:-65077890 Msa0464870:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3_3:+65078094 None:intergenic
ATCTTGGTTAAAGCAAATGC+AGG 0.576779 3_3:+65077697 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3_3:-65078245 Msa0464870:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3_3:-65077764 Msa0464870:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3_3:+65078095 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3_3:-65078652 None:intergenic
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3_3:-65077017 Msa0464870:CDS
TGTGGTGGATGTGTTGCACT+TGG 0.594113 3_3:-65078227 Msa0464870:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3_3:+65077808 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3_3:+65077662 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3_3:-65078288 Msa0464870:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3_3:+65076980 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.603513 3_3:-65078142 Msa0464870:CDS
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3_3:-65077044 Msa0464870:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3_3:-65077861 Msa0464870:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3_3:-65076931 Msa0464870:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3_3:+65077769 None:intergenic
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3_3:-65077757 Msa0464870:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3_3:-65077954 Msa0464870:CDS
CTTGATCCAATTCATGACCA+CGG 0.630679 3_3:-65078254 Msa0464870:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3_3:-65077850 Msa0464870:CDS
TAGCAATTGTAAGGAAGACA+TGG 0.634002 3_3:+65076974 None:intergenic
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3_3:-65077739 Msa0464870:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3_3:-65077971 Msa0464870:intron
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3_3:-65078138 Msa0464870:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3_3:+65078588 None:intergenic
GCTAAGGACAAGGAGAGATG+AGG 0.655281 3_3:-65076955 Msa0464870:CDS
GGGACTATGCAGGTGCAGCA+GGG 0.659269 3_3:-65078362 Msa0464870:intron
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3_3:-65077031 Msa0464870:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3_3:+65077824 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3_3:+65077862 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3_3:+65078594 None:intergenic
CATGACCACGGGGAATGTGG+TGG 0.668455 3_3:-65078242 Msa0464870:CDS
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3_3:-65077763 Msa0464870:CDS
TGAAGCGGTGAAGGAAACAG+AGG 0.678822 3_3:-65078143 Msa0464870:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3_3:-65077016 Msa0464870:CDS
TAGAGAAGGTTGCACCAACG+TGG 0.699752 3_3:-65077876 Msa0464870:CDS
CACATCCACCACATTCCCCG+TGG 0.715239 3_3:+65078237 None:intergenic
AGACGTGCGAGAGTACGAGA+AGG 0.721408 3_3:+65078314 None:intergenic
ACTATGCAGGTGCAGCAGGG+AGG 0.723689 3_3:-65078359 Msa0464870:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3_3:-65077034 Msa0464870:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3_3:-65077847 Msa0464870:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.769201 3_3:-65078141 Msa0464870:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3_3:-65078252 Msa0464870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGAATTAACAAATTTTT+TGG - chr3_3:65076995-65077014 Msa0464870:CDS 10.0%
!!! ACATTTTTTCATATAAAAAA+AGG - chr3_3:65077894-65077913 Msa0464870:CDS 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3_3:65076995-65077014 Msa0464870:CDS 10.0%
!!! ACATTTTTTCATATAAAAAA+AGG - chr3_3:65077894-65077913 Msa0464870:CDS 10.0%
!! TATATATTTCTTTAGTAAGT+TGG - chr3_3:65077505-65077524 Msa0464870:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_3:65077994-65078013 Msa0464870:intron 15.0%
!! TATATATTTCTTTAGTAAGT+TGG - chr3_3:65077505-65077524 Msa0464870:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_3:65077994-65078013 Msa0464870:intron 15.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_3:65078384-65078403 Msa0464870:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_3:65078412-65078431 Msa0464870:intron 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_3:65078384-65078403 Msa0464870:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_3:65078412-65078431 Msa0464870:intron 20.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_3:65077016-65077035 Msa0464870:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_3:65077348-65077367 Msa0464870:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_3:65077919-65077938 Msa0464870:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_3:65078092-65078111 Msa0464870:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_3:65078163-65078182 Msa0464870:CDS 25.0%
!!! CTAGTTACTAGTTTTCATTT+AGG - chr3_3:65078383-65078402 Msa0464870:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_3:65078391-65078410 Msa0464870:intron 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_3:65077016-65077035 Msa0464870:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_3:65077348-65077367 Msa0464870:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_3:65077919-65077938 Msa0464870:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_3:65078092-65078111 Msa0464870:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_3:65078163-65078182 Msa0464870:CDS 25.0%
!!! CTAGTTACTAGTTTTCATTT+AGG - chr3_3:65078383-65078402 Msa0464870:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_3:65078391-65078410 Msa0464870:intron 25.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_3:65076873-65076892 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_3:65076872-65076891 Msa0464870:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_3:65076921-65076940 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_3:65076945-65076964 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_3:65077105-65077124 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_3:65077103-65077122 Msa0464870:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_3:65077132-65077151 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_3:65077163-65077182 Msa0464870:intron 30.0%
!! TTCTTTAGTAAGTTGGTGAT+CGG - chr3_3:65077512-65077531 Msa0464870:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_3:65077548-65077567 Msa0464870:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_3:65077549-65077568 Msa0464870:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_3:65077654-65077673 Msa0464870:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_3:65077728-65077747 Msa0464870:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_3:65078082-65078101 Msa0464870:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_3:65078165-65078184 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_3:65078162-65078181 Msa0464870:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_3:65078178-65078197 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_3:65078225-65078244 Msa0464870:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_3:65078226-65078245 Msa0464870:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_3:65078336-65078355 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_3:65078424-65078443 Msa0464870:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_3:65078637-65078656 Msa0464870:CDS 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_3:65076873-65076892 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_3:65076872-65076891 Msa0464870:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_3:65076921-65076940 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_3:65076945-65076964 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_3:65077105-65077124 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_3:65077103-65077122 Msa0464870:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_3:65077132-65077151 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_3:65077163-65077182 Msa0464870:intron 30.0%
!! TTCTTTAGTAAGTTGGTGAT+CGG - chr3_3:65077512-65077531 Msa0464870:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_3:65077548-65077567 Msa0464870:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_3:65077549-65077568 Msa0464870:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_3:65077654-65077673 Msa0464870:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_3:65077728-65077747 Msa0464870:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_3:65078082-65078101 Msa0464870:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_3:65078165-65078184 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_3:65078162-65078181 Msa0464870:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_3:65078178-65078197 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_3:65078225-65078244 Msa0464870:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_3:65078226-65078245 Msa0464870:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_3:65078336-65078355 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_3:65078424-65078443 Msa0464870:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_3:65078637-65078656 Msa0464870:CDS 30.0%
TACATTTCATCTACACTTCC+AGG - chr3_3:65076924-65076943 Msa0464870:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_3:65077096-65077115 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_3:65077097-65077116 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_3:65077133-65077152 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_3:65077226-65077245 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_3:65077227-65077246 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_3:65077322-65077341 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_3:65077356-65077375 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_3:65077354-65077373 Msa0464870:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_3:65077395-65077414 Msa0464870:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_3:65077438-65077457 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_3:65077438-65077457 Msa0464870:intron 35.0%
!! TCTTTAGTAAGTTGGTGATC+GGG - chr3_3:65077513-65077532 Msa0464870:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_3:65077597-65077616 Msa0464870:intron 35.0%
TTGGAGCATATATGTAGAGA+AGG - chr3_3:65077616-65077635 Msa0464870:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_3:65077655-65077674 Msa0464870:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_3:65077685-65077704 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_3:65077812-65077831 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_3:65078252-65078271 Msa0464870:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_3:65078269-65078288 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_3:65078270-65078289 Msa0464870:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_3:65078535-65078554 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_3:65078535-65078554 Msa0464870:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_3:65078575-65078594 Msa0464870:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_3:65078610-65078629 Msa0464870:CDS 35.0%
TACATTTCATCTACACTTCC+AGG - chr3_3:65076924-65076943 Msa0464870:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_3:65077096-65077115 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_3:65077097-65077116 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_3:65077133-65077152 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_3:65077226-65077245 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_3:65077227-65077246 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_3:65077322-65077341 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_3:65077356-65077375 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_3:65077354-65077373 Msa0464870:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_3:65077395-65077414 Msa0464870:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_3:65077438-65077457 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_3:65077438-65077457 Msa0464870:intron 35.0%
!! TCTTTAGTAAGTTGGTGATC+GGG - chr3_3:65077513-65077532 Msa0464870:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_3:65077597-65077616 Msa0464870:intron 35.0%
TTGGAGCATATATGTAGAGA+AGG - chr3_3:65077616-65077635 Msa0464870:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_3:65077655-65077674 Msa0464870:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_3:65077685-65077704 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_3:65077812-65077831 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_3:65078252-65078271 Msa0464870:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_3:65078269-65078288 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_3:65078270-65078289 Msa0464870:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_3:65078535-65078554 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_3:65078535-65078554 Msa0464870:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_3:65078575-65078594 Msa0464870:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_3:65078610-65078629 Msa0464870:CDS 35.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_3:65076915-65076934 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_3:65077123-65077142 Msa0464870:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_3:65077124-65077143 Msa0464870:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_3:65077134-65077153 Msa0464870:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_3:65077218-65077237 Msa0464870:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_3:65077252-65077271 Msa0464870:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_3:65077253-65077272 Msa0464870:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_3:65077552-65077571 Msa0464870:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_3:65077656-65077675 Msa0464870:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_3:65077767-65077786 Msa0464870:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_3:65077819-65077838 Msa0464870:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_3:65078205-65078224 Msa0464870:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_3:65078458-65078477 Msa0464870:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_3:65078488-65078507 Msa0464870:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_3:65078489-65078508 Msa0464870:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_3:65078529-65078548 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_3:65078544-65078563 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_3:65078541-65078560 Msa0464870:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_3:65078559-65078578 Msa0464870:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_3:65078581-65078600 Msa0464870:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_3:65078613-65078632 Msa0464870:CDS 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_3:65076915-65076934 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_3:65077123-65077142 Msa0464870:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_3:65077124-65077143 Msa0464870:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_3:65077134-65077153 Msa0464870:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_3:65077218-65077237 Msa0464870:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_3:65077252-65077271 Msa0464870:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_3:65077253-65077272 Msa0464870:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_3:65077552-65077571 Msa0464870:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_3:65077656-65077675 Msa0464870:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_3:65077767-65077786 Msa0464870:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_3:65077819-65077838 Msa0464870:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_3:65078205-65078224 Msa0464870:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_3:65078458-65078477 Msa0464870:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_3:65078488-65078507 Msa0464870:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_3:65078489-65078508 Msa0464870:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_3:65078529-65078548 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_3:65078544-65078563 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_3:65078541-65078560 Msa0464870:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_3:65078559-65078578 Msa0464870:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_3:65078581-65078600 Msa0464870:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_3:65078613-65078632 Msa0464870:CDS 40.0%
TGATCCAATTCATGACCACG+GGG - chr3_3:65077254-65077273 Msa0464870:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_3:65077414-65077433 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_3:65077415-65077434 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_3:65077535-65077554 Msa0464870:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_3:65077647-65077666 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_3:65077645-65077664 Msa0464870:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_3:65077697-65077716 Msa0464870:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_3:65077740-65077759 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_3:65077742-65077761 Msa0464870:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_3:65077743-65077762 Msa0464870:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_3:65077847-65077866 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_3:65078462-65078481 Msa0464870:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_3:65078472-65078491 Msa0464870:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_3:65078490-65078509 Msa0464870:intron 45.0%
TGATCCAATTCATGACCACG+GGG - chr3_3:65077254-65077273 Msa0464870:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_3:65077414-65077433 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_3:65077415-65077434 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_3:65077535-65077554 Msa0464870:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_3:65077647-65077666 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_3:65077645-65077664 Msa0464870:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_3:65077697-65077716 Msa0464870:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_3:65077740-65077759 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_3:65077742-65077761 Msa0464870:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_3:65077743-65077762 Msa0464870:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_3:65077847-65077866 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_3:65078462-65078481 Msa0464870:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_3:65078472-65078491 Msa0464870:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_3:65078490-65078509 Msa0464870:intron 45.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_3:65076906-65076925 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_3:65077261-65077280 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_3:65077261-65077280 Msa0464870:intron 50.0%
!! TGTGGTGGATGTGTTGCACT+TGG - chr3_3:65077279-65077298 Msa0464870:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_3:65077363-65077382 Msa0464870:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_3:65077364-65077383 Msa0464870:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_3:65077365-65077384 Msa0464870:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_3:65077524-65077543 Msa0464870:intron 50.0%
TAGAGAAGGTTGCACCAACG+TGG - chr3_3:65077630-65077649 Msa0464870:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_3:65077659-65077678 Msa0464870:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_3:65077696-65077715 Msa0464870:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_3:65077698-65077717 Msa0464870:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_3:65077828-65077847 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_3:65077833-65077852 Msa0464870:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_3:65078475-65078494 Msa0464870:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_3:65078551-65078570 Msa0464870:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_3:65076906-65076925 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_3:65077261-65077280 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_3:65077261-65077280 Msa0464870:intron 50.0%
!! TGTGGTGGATGTGTTGCACT+TGG - chr3_3:65077279-65077298 Msa0464870:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_3:65077363-65077382 Msa0464870:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_3:65077364-65077383 Msa0464870:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_3:65077365-65077384 Msa0464870:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_3:65077524-65077543 Msa0464870:intron 50.0%
TAGAGAAGGTTGCACCAACG+TGG - chr3_3:65077630-65077649 Msa0464870:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_3:65077659-65077678 Msa0464870:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_3:65077696-65077715 Msa0464870:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_3:65077698-65077717 Msa0464870:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_3:65077828-65077847 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_3:65077833-65077852 Msa0464870:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_3:65078475-65078494 Msa0464870:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_3:65078551-65078570 Msa0464870:intron 50.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_3:65076902-65076921 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_3:65077195-65077214 None:intergenic 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_3:65077701-65077720 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_3:65076902-65076921 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_3:65077195-65077214 None:intergenic 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_3:65077701-65077720 None:intergenic 55.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_3:65077143-65077162 Msa0464870:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_3:65077144-65077163 Msa0464870:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_3:65077147-65077166 Msa0464870:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_3:65077264-65077283 Msa0464870:intron 60.0%
CACATCCACCACATTCCCCG+TGG + chr3_3:65077272-65077291 None:intergenic 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_3:65077368-65077387 Msa0464870:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_3:65077749-65077768 Msa0464870:CDS 60.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_3:65077143-65077162 Msa0464870:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_3:65077144-65077163 Msa0464870:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_3:65077147-65077166 Msa0464870:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_3:65077264-65077283 Msa0464870:intron 60.0%
CACATCCACCACATTCCCCG+TGG + chr3_3:65077272-65077291 None:intergenic 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_3:65077368-65077387 Msa0464870:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_3:65077749-65077768 Msa0464870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65076860 65078668 65076860 ID=Msa0464870;Name=Msa0464870
chr3_3 mRNA 65076860 65078668 65076860 ID=Msa0464870-mRNA-1;Parent=Msa0464870;Name=Msa0464870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|307
chr3_3 exon 65078583 65078668 65078583 ID=Msa0464870-mRNA-1:exon:14414;Parent=Msa0464870-mRNA-1
chr3_3 exon 65078069 65078372 65078069 ID=Msa0464870-mRNA-1:exon:14413;Parent=Msa0464870-mRNA-1
chr3_3 exon 65077674 65077984 65077674 ID=Msa0464870-mRNA-1:exon:14412;Parent=Msa0464870-mRNA-1
chr3_3 exon 65076860 65077082 65076860 ID=Msa0464870-mRNA-1:exon:14411;Parent=Msa0464870-mRNA-1
chr3_3 CDS 65078583 65078668 65078583 ID=Msa0464870-mRNA-1:cds;Parent=Msa0464870-mRNA-1
chr3_3 CDS 65078069 65078372 65078069 ID=Msa0464870-mRNA-1:cds;Parent=Msa0464870-mRNA-1
chr3_3 CDS 65077674 65077984 65077674 ID=Msa0464870-mRNA-1:cds;Parent=Msa0464870-mRNA-1
chr3_3 CDS 65076860 65077082 65076860 ID=Msa0464870-mRNA-1:cds;Parent=Msa0464870-mRNA-1
Gene Sequence

>Msa0464870

ATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTGCAGCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCACGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGATGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTCAAGTGTGTCAAGTTAGTTACCAATAATTTTGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACGAGAATCGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTAGAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCCTGCATTTGCTTTAACCAAGATGCATGCAAGGTTCCTCTTTGCAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGGACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCATGTTTTCGGTGTATCTAA

Protein sequence

>Msa0464870

MVTSNGNVKICGVPTNAAIAFVHFIYTSRCSREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYFKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKERESRKKRGNKHREEQKLFVQLSEAVQCLEHICREGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDACKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIACFRCI*