AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465240 MtrunA17_Chr3g0117091 91.691 349 19 2 1 339 1 349 0.0 648
Msa0465240 MtrunA17_Chr1g0211161 69.759 291 22 6 3 292 4 229 5.80e-130 370
Msa0465240 MtrunA17_Chr4g0058631 54.145 386 105 15 1 339 1 361 7.89e-119 347
Msa0465240 MtrunA17_Chr7g0270891 50.781 256 118 4 1 249 1 255 9.63e-76 237
Msa0465240 MtrunA17_Chr1g0193371 83.465 127 21 0 1 127 1 127 2.50e-75 236
Msa0465240 MtrunA17_Chr1g0193801 79.528 127 26 0 1 127 1 127 9.64e-73 230
Msa0465240 MtrunA17_Chr7g0271241 81.343 134 25 0 1 134 1 134 1.57e-69 221
Msa0465240 MtrunA17_Chr2g0330041 76.000 125 30 0 1 125 1 125 2.72e-66 214
Msa0465240 MtrunA17_Chr8g0342521 75.000 124 31 0 1 124 1 124 6.77e-66 211
Msa0465240 MtrunA17_Chr8g0342541 74.194 124 32 0 1 124 1 124 2.07e-65 210
Msa0465240 MtrunA17_Chr2g0309911 72.222 126 34 1 1 126 1 125 1.47e-64 207
Msa0465240 MtrunA17_Chr3g0131121 66.929 127 42 0 1 127 1 127 2.78e-61 197
Msa0465240 MtrunA17_Chr8g0342481 76.271 118 27 1 1 117 1 118 1.27e-60 199
Msa0465240 MtrunA17_Chr8g0387421 69.748 119 36 0 1 119 1 119 2.29e-59 193
Msa0465240 MtrunA17_Chr5g0435101 64.800 125 44 0 3 127 2 126 2.36e-59 190
Msa0465240 MtrunA17_Chr8g0385321 66.142 127 43 0 1 127 1 127 1.18e-58 191
Msa0465240 MtrunA17_Chr3g0110351 64.662 133 47 0 1 133 1 133 5.69e-58 189
Msa0465240 MtrunA17_Chr4g0037141 53.416 161 69 1 1 155 1 161 8.78e-58 188
Msa0465240 MtrunA17_Chr4g0039971 61.194 134 52 0 1 134 2 135 1.70e-57 189
Msa0465240 MtrunA17_Chr4g0032401 79.245 106 22 0 11 116 16 121 4.53e-57 188
Msa0465240 MtrunA17_Chr7g0217741 51.955 179 72 1 1 179 1 165 9.62e-57 186
Msa0465240 MtrunA17_Chr5g0397231 71.818 110 31 0 1 110 1 110 9.62e-57 187
Msa0465240 MtrunA17_Chr5g0434571 66.142 127 43 0 1 127 37 163 1.14e-56 187
Msa0465240 MtrunA17_Chr4g0057031 63.780 127 46 0 1 127 1 127 1.18e-56 185
Msa0465240 MtrunA17_Chr5g0395281 65.600 125 43 0 12 136 12 136 1.48e-56 186
Msa0465240 MtrunA17_Chr4g0042671 66.929 127 42 0 1 127 1 127 1.67e-56 189
Msa0465240 MtrunA17_Chr3g0088461 77.778 108 24 0 9 116 19 126 1.75e-56 187
Msa0465240 MtrunA17_Chr2g0328771 78.095 105 23 0 12 116 20 124 1.92e-56 186
Msa0465240 MtrunA17_Chr6g0452271 51.807 166 66 2 1 152 1 166 2.28e-56 186
Msa0465240 MtrunA17_Chr3g0115821 62.992 127 47 0 1 127 1 127 2.87e-56 186
Msa0465240 MtrunA17_Chr5g0410961 62.992 127 47 0 1 127 1 127 1.13e-55 184
Msa0465240 MtrunA17_Chr6g0453471 65.354 127 44 0 1 127 1 127 1.65e-55 184
Msa0465240 MtrunA17_Chr8g0349261 51.010 198 80 4 1 194 1 185 1.71e-55 182
Msa0465240 MtrunA17_Chr2g0323411 63.492 126 46 0 1 126 1 126 1.02e-54 182
Msa0465240 MtrunA17_Chr7g0228891 64.567 127 45 0 1 127 1 127 1.34e-54 179
Msa0465240 MtrunA17_Chr6g0470971 54.598 174 69 4 9 174 11 182 2.43e-54 179
Msa0465240 MtrunA17_Chr2g0281071 62.205 127 47 1 1 126 1 127 2.90e-54 181
Msa0465240 MtrunA17_Chr3g0103281 62.791 129 48 0 1 129 1 129 7.25e-54 179
Msa0465240 MtrunA17_Chr1g0203441 69.421 121 36 1 9 129 10 129 9.66e-54 177
Msa0465240 MtrunA17_Chr4g0048511 61.417 127 48 1 1 126 1 127 2.63e-53 179
Msa0465240 MtrunA17_Chr4g0044421 61.111 126 49 0 1 126 1 126 5.01e-53 173
Msa0465240 MtrunA17_Chr7g0274581 61.157 121 47 0 1 121 1 121 1.48e-51 169
Msa0465240 MtrunA17_Chr1g0203411 63.559 118 43 0 1 118 1 118 1.67e-51 172
Msa0465240 MtrunA17_Chr2g0323351 64.035 114 40 1 5 118 6 118 5.06e-51 170
Msa0465240 MtrunA17_Chr3g0121241 62.295 122 46 0 6 127 36 157 6.47e-51 171
Msa0465240 MtrunA17_Chr4g0070611 44.292 219 100 5 1 213 1 203 1.89e-50 170
Msa0465240 MtrunA17_Chr7g0261281 63.793 116 42 0 1 116 1 116 3.81e-50 168
Msa0465240 MtrunA17_Chr4g0070641 48.295 176 80 3 1 173 1 168 4.73e-50 164
Msa0465240 MtrunA17_Chr4g0022931 61.261 111 43 0 6 116 7 117 1.65e-49 166
Msa0465240 MtrunA17_Chr1g0187761 66.379 116 39 0 1 116 1 116 3.66e-49 165
Msa0465240 MtrunA17_Chr4g0022901 60.714 112 44 0 6 117 7 118 1.02e-48 164
Msa0465240 MtrunA17_Chr1g0152011 38.267 277 138 8 1 259 1 262 8.27e-48 164
Msa0465240 MtrunA17_Chr1g0167691 61.538 117 45 0 1 117 1 117 2.93e-47 160
Msa0465240 MtrunA17_Chr4g0022911 58.929 112 46 0 6 117 7 118 9.49e-47 160
Msa0465240 MtrunA17_Chr1g0167661 62.393 117 44 0 1 117 1 117 1.13e-46 159
Msa0465240 MtrunA17_Chr5g0417821 61.207 116 45 0 12 127 7 122 1.90e-46 159
Msa0465240 MtrunA17_Chr1g0151941 55.085 118 52 1 1 117 1 118 2.11e-46 158
Msa0465240 MtrunA17_Chr4g0068061 62.069 116 44 0 1 116 1 116 3.45e-46 160
Msa0465240 MtrunA17_Chr8g0346561 60.169 118 47 0 1 118 1 118 3.86e-46 159
Msa0465240 MtrunA17_Chr7g0275911 59.664 119 48 0 1 119 1 119 6.70e-46 157
Msa0465240 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 8.04e-46 160
Msa0465240 MtrunA17_Chr5g0400821 50.327 153 72 3 1 151 1 151 1.23e-45 157
Msa0465240 MtrunA17_Chr7g0217221 45.989 187 91 2 1 187 1 177 2.65e-45 155
Msa0465240 MtrunA17_Chr4g0028311 60.169 118 46 1 1 117 1 118 3.10e-45 157
Msa0465240 MtrunA17_Chr8g0342511 77.011 87 20 0 1 87 1 87 6.30e-45 149
Msa0465240 MtrunA17_Chr2g0311221 61.468 109 42 0 2 110 4 112 1.27e-44 155
Msa0465240 MtrunA17_Chr3g0135311 56.780 118 50 1 1 117 1 118 9.62e-44 154
Msa0465240 MtrunA17_Chr8g0342531 72.527 91 25 0 1 91 1 91 1.02e-43 148
Msa0465240 MtrunA17_Chr8g0343831 46.154 169 83 4 10 174 6 170 2.71e-43 150
Msa0465240 MtrunA17_Chr4g0060721 51.825 137 60 1 1 131 2 138 3.72e-43 152
Msa0465240 MtrunA17_Chr7g0264641 55.932 118 51 1 1 117 1 118 8.43e-43 149
Msa0465240 MtrunA17_Chr7g0254411 56.349 126 53 1 1 124 1 126 1.18e-42 150
Msa0465240 MtrunA17_Chr2g0327351 59.459 111 44 1 1 110 1 111 6.06e-42 148
Msa0465240 MtrunA17_Chr4g0055981 60.748 107 42 0 9 115 52 158 6.20e-42 145
Msa0465240 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 8.12e-42 147
Msa0465240 MtrunA17_Chr1g0186061 60.000 105 42 0 11 115 19 123 1.92e-41 145
Msa0465240 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 3.39e-41 145
Msa0465240 MtrunA17_Chr8g0342471 72.222 90 24 1 1 89 1 90 5.86e-41 140
Msa0465240 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 6.06e-41 144
Msa0465240 MtrunA17_Chr7g0247131 72.941 85 23 0 43 127 9 93 6.88e-41 144
Msa0465240 MtrunA17_Chr8g0342461 71.111 90 25 1 1 89 1 90 1.58e-40 139
Msa0465240 MtrunA17_Chr7g0228231 55.085 118 51 1 1 116 1 118 4.44e-40 140
Msa0465240 MtrunA17_Chr6g0453211 59.091 110 45 0 1 110 1 110 4.55e-40 143
Msa0465240 MtrunA17_Chr3g0099131 53.719 121 55 1 12 132 41 160 5.43e-40 147
Msa0465240 MtrunA17_Chr1g0180391 45.517 145 73 1 12 156 19 157 5.44e-40 140
Msa0465240 MtrunA17_Chr1g0154031 59.615 104 42 0 12 115 76 179 6.10e-40 145
Msa0465240 MtrunA17_Chr7g0269831 62.069 116 44 0 1 116 1 116 6.92e-40 144
Msa0465240 MtrunA17_Chr4g0072751 55.856 111 48 1 1 110 1 111 9.66e-40 143
Msa0465240 MtrunA17_Chr6g0450101 54.237 118 52 1 1 116 1 118 1.49e-39 139
Msa0465240 MtrunA17_Chr4g0022881 56.604 106 46 0 9 114 9 114 1.80e-39 139
Msa0465240 MtrunA17_Chr4g0022891 58.095 105 44 0 9 113 9 113 2.02e-39 139
Msa0465240 MtrunA17_Chr6g0487491 48.611 144 65 2 1 135 1 144 4.89e-39 139
Msa0465240 MtrunA17_Chr1g0209661 51.220 123 59 1 11 133 26 147 6.08e-39 140
Msa0465240 MtrunA17_Chr8g0354661 58.654 104 43 0 12 115 37 140 8.55e-39 144
Msa0465240 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 8.98e-39 139
Msa0465240 MtrunA17_Chr2g0327821 47.244 127 65 1 8 132 2 128 1.77e-38 137
Msa0465240 MtrunA17_Chr3g0080861 57.692 104 44 0 12 115 37 140 2.93e-38 142
Msa0465240 MtrunA17_Chr1g0194291 57.692 104 44 0 12 115 21 124 5.24e-38 136
Msa0465240 MtrunA17_Chr5g0434831 56.604 106 46 0 12 117 7 112 3.67e-37 132
Msa0465240 MtrunA17_Chr7g0240821 58.000 100 42 0 17 116 6 105 4.27e-37 133
Msa0465240 MtrunA17_Chr5g0434931 50.000 114 57 0 8 121 31 144 1.43e-36 133
Msa0465240 MtrunA17_Chr4g0042611 63.636 88 32 0 1 88 1 88 4.29e-36 125
Msa0465240 MtrunA17_Chr2g0322521 59.615 104 42 0 12 115 29 132 5.70e-36 134
Msa0465240 MtrunA17_Chr4g0030881 50.877 114 49 1 13 119 8 121 5.78e-36 130
Msa0465240 MtrunA17_Chr8g0360111 56.436 101 44 0 12 112 25 125 1.42e-35 130
Msa0465240 MtrunA17_Chr5g0434911 51.818 110 53 0 10 119 19 128 2.75e-35 129
Msa0465240 MtrunA17_Chr7g0220341 46.763 139 55 2 12 148 25 146 1.07e-34 128
Msa0465240 MtrunA17_Chr1g0192411 45.985 137 68 1 11 141 11 147 1.24e-34 130
Msa0465240 MtrunA17_Chr5g0434841 51.818 110 53 0 10 119 18 127 1.97e-34 128
Msa0465240 MtrunA17_Chr7g0228991 50.000 112 56 0 8 119 25 136 2.89e-34 127
Msa0465240 MtrunA17_Chr2g0323321 64.198 81 29 0 12 92 11 91 2.19e-33 119
Msa0465240 MtrunA17_Chr4g0068921 50.400 125 61 1 12 136 24 147 2.29e-33 122
Msa0465240 MtrunA17_Chr5g0440781 50.893 112 53 2 13 123 13 123 4.17e-33 121
Msa0465240 MtrunA17_Chr8g0334881 52.336 107 50 1 9 114 7 113 8.21e-33 124
Msa0465240 MtrunA17_Chr5g0440761 50.893 112 53 2 13 123 13 123 2.06e-32 121
Msa0465240 MtrunA17_Chr5g0441141 50.893 112 53 2 13 123 13 123 2.12e-32 122
Msa0465240 MtrunA17_Chr2g0293911 55.340 103 46 0 12 114 24 126 2.51e-32 123
Msa0465240 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 6.45e-31 115
Msa0465240 MtrunA17_Chr5g0395221 62.500 80 30 0 9 88 9 88 1.69e-30 111
Msa0465240 MtrunA17_Chr3g0093811 59.770 87 35 0 43 129 13 99 2.41e-30 116
Msa0465240 MtrunA17_Chr4g0013361 51.923 104 49 1 12 114 10 113 3.41e-30 116
Msa0465240 MtrunA17_Chr2g0294811 56.522 92 40 0 1 92 1 92 3.12e-29 108
Msa0465240 MtrunA17_Chr4g0008551 45.865 133 68 3 14 145 38 167 1.29e-28 113
Msa0465240 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 2.70e-28 107
Msa0465240 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 1.34e-27 110
Msa0465240 MtrunA17_Chr5g0401731 50.909 110 51 2 14 122 15 122 1.36e-27 110
Msa0465240 MtrunA17_Chr4g0053431 51.961 102 48 1 14 115 5 105 1.50e-27 108
Msa0465240 MtrunA17_Chr7g0238631 50.909 110 51 2 8 116 107 214 2.36e-27 112
Msa0465240 MtrunA17_Chr4g0058991 42.857 112 61 2 9 119 204 313 2.29e-26 108
Msa0465240 MtrunA17_Chr6g0454921 50.485 103 48 2 14 115 15 115 2.57e-26 103
Msa0465240 MtrunA17_Chr7g0229131 40.714 140 82 1 43 182 3 141 4.85e-26 102
Msa0465240 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 1.03e-25 102
Msa0465240 MtrunA17_Chr3g0117511 42.609 115 61 3 8 119 175 287 1.47e-25 106
Msa0465240 MtrunA17_Chr3g0133601 50.485 103 48 2 14 115 37 137 2.22e-25 102
Msa0465240 MtrunA17_Chr3g0139671 47.273 110 55 2 8 116 79 186 2.27e-25 107
Msa0465240 MtrunA17_Chr5g0434901 57.746 71 30 0 43 113 4 74 6.83e-25 97.4
Msa0465240 MtrunA17_Chr6g0480581 47.423 97 48 2 14 109 4 98 2.01e-24 99.8
Msa0465240 MtrunA17_Chr6g0453751 52.688 93 35 2 12 95 20 112 5.69e-24 95.5
Msa0465240 MtrunA17_Chr1g0157731 45.455 110 57 2 8 116 85 192 7.54e-24 102
Msa0465240 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 1.01e-23 101
Msa0465240 MtrunA17_Chr4g0042501 43.925 107 57 2 14 119 105 209 1.16e-23 100
Msa0465240 MtrunA17_Chr7g0228531 37.063 143 79 4 14 147 220 360 1.36e-22 97.8
Msa0465240 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 3.11e-22 91.7
Msa0465240 MtrunA17_Chr5g0437321 48.000 100 49 2 14 112 19 116 7.19e-22 94.0
Msa0465240 MtrunA17_Chr3g0125801 44.860 107 56 2 14 119 16 120 1.05e-21 93.6
Msa0465240 MtrunA17_Chr5g0425591 47.619 84 43 1 13 95 10 93 1.91e-21 87.4
Msa0465240 MtrunA17_Chr7g0228401 46.067 89 47 1 25 113 290 377 3.35e-21 94.4
Msa0465240 MtrunA17_Chr1g0177901 46.667 90 44 2 24 113 7 92 1.73e-20 88.2
Msa0465240 MtrunA17_Chr7g0238651 32.432 148 89 3 17 153 10 157 6.45e-20 89.4
Msa0465240 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 1.01e-19 89.0
Msa0465240 MtrunA17_Chr5g0397841 43.000 100 54 2 12 110 108 205 2.56e-19 88.6
Msa0465240 MtrunA17_Chr7g0254261 41.121 107 60 2 14 119 89 193 1.94e-18 85.1
Msa0465240 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 2.19e-18 85.5
Msa0465240 MtrunA17_Chr7g0233061 36.522 115 49 3 14 116 180 282 1.61e-17 82.4
Msa0465240 MtrunA17_Chr5g0395231 59.649 57 23 0 78 134 5 61 1.70e-15 75.1
Msa0465240 MtrunA17_Chr1g0193901 47.191 89 45 2 10 96 9 97 5.40e-15 70.5
Msa0465240 MtrunA17_Chr1g0193891 47.191 89 45 2 10 96 9 97 5.40e-15 70.5
Msa0465240 MtrunA17_Chr1g0193871 47.191 89 45 2 10 96 9 97 5.40e-15 70.5
Msa0465240 MtrunA17_Chr1g0193881 47.191 89 45 2 10 96 9 97 5.40e-15 70.5
Msa0465240 MtrunA17_Chr5g0416341 35.354 99 63 1 17 115 29 126 1.85e-14 73.9
Msa0465240 MtrunA17_Chr8g0362231 33.884 121 78 2 2 122 10 128 1.15e-13 71.6
Msa0465240 MtrunA17_Chr5g0434871 59.091 44 18 0 74 117 2 45 1.94e-13 64.7
Msa0465240 MtrunA17_Chr4g0042621 71.795 39 11 0 89 127 15 53 1.59e-12 67.4
Msa0465240 MtrunA17_Chr3g0145551 71.429 35 10 0 92 126 2 36 3.29e-12 61.6
Msa0465240 MtrunA17_Chr2g0322831 60.976 41 16 0 70 110 34 74 1.07e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465240 AT5G26660.1 81.818 132 24 0 1 132 1 132 7.40e-77 240
Msa0465240 AT4G01680.3 75.000 144 34 2 1 144 1 142 2.56e-74 229
Msa0465240 AT1G57560.1 80.315 127 25 0 1 127 1 127 1.59e-73 230
Msa0465240 AT1G57560.2 80.315 127 25 0 1 127 1 127 1.93e-73 228
Msa0465240 AT4G01680.1 75.000 144 34 2 1 144 1 142 3.30e-73 230
Msa0465240 AT1G09540.1 73.103 145 36 2 1 145 1 142 1.64e-72 229
Msa0465240 AT4G01680.2 69.231 156 34 3 1 144 1 154 1.84e-69 221
Msa0465240 AT3G13890.2 79.487 117 24 0 1 117 1 117 1.54e-64 208
Msa0465240 AT3G12720.1 71.429 126 35 1 1 126 12 136 7.16e-64 205
Msa0465240 AT3G13890.1 73.810 126 24 1 1 117 1 126 1.99e-61 201
Msa0465240 AT1G63910.1 71.186 118 34 0 1 118 1 118 4.82e-59 194
Msa0465240 AT4G34990.1 65.354 127 44 0 1 127 1 127 1.29e-58 190
Msa0465240 AT2G16720.1 64.567 127 45 0 1 127 1 127 2.28e-58 189
Msa0465240 AT3G01140.2 59.589 146 59 0 1 146 1 146 4.16e-58 191
Msa0465240 AT1G66230.1 60.417 144 52 1 1 144 1 139 1.20e-57 188
Msa0465240 AT5G65230.1 63.158 133 49 0 1 133 1 133 2.86e-57 188
Msa0465240 AT4G05100.1 63.780 127 45 1 1 126 1 127 6.72e-57 187
Msa0465240 AT5G10280.1 64.567 127 45 0 1 127 1 127 8.00e-57 187
Msa0465240 AT3G02940.2 62.205 127 48 0 1 127 1 127 8.43e-57 187
Msa0465240 AT4G12350.1 64.567 127 45 0 1 127 1 127 1.00e-56 186
Msa0465240 AT4G21440.1 61.194 134 52 0 1 134 1 134 1.79e-56 187
Msa0465240 AT4G38620.1 54.967 151 64 1 1 151 1 147 1.98e-56 185
Msa0465240 AT4G22680.1 60.000 145 57 1 1 145 1 144 2.04e-56 184
Msa0465240 AT3G02940.1 62.205 127 48 0 1 127 1 127 2.19e-56 186
Msa0465240 AT3G02940.3 62.205 127 48 0 1 127 1 127 2.19e-56 186
Msa0465240 AT3G61250.1 65.354 127 44 0 1 127 1 127 2.78e-56 185
Msa0465240 AT1G22640.1 61.417 127 49 0 1 127 1 127 2.86e-56 184
Msa0465240 AT5G15310.4 65.354 127 44 0 1 127 1 127 3.93e-56 183
Msa0465240 AT4G09460.1 61.240 129 50 0 1 129 1 129 5.05e-56 182
Msa0465240 AT5G16600.1 66.142 127 43 0 1 127 1 127 7.12e-56 185
Msa0465240 AT5G12870.1 76.147 109 26 0 10 118 16 124 8.38e-56 183
Msa0465240 AT5G15310.1 65.354 127 44 0 1 127 1 127 9.86e-56 184
Msa0465240 AT5G15310.2 65.354 127 44 0 1 127 1 127 1.16e-55 184
Msa0465240 AT5G16770.4 58.088 136 57 0 1 136 1 136 1.99e-55 184
Msa0465240 AT5G16770.3 58.088 136 57 0 1 136 1 136 1.99e-55 184
Msa0465240 AT3G01140.1 59.574 141 57 0 6 146 49 189 2.04e-55 186
Msa0465240 AT4G28110.1 61.111 126 49 0 1 126 1 126 2.31e-55 182
Msa0465240 AT5G16770.1 58.088 136 57 0 1 136 1 136 3.23e-55 184
Msa0465240 AT5G16770.2 58.088 136 57 0 1 136 1 136 3.23e-55 184
Msa0465240 AT5G54230.1 62.595 131 49 0 1 131 1 131 4.66e-55 182
Msa0465240 AT1G34670.1 62.992 127 47 0 1 127 1 127 6.67e-55 184
Msa0465240 AT5G56110.1 62.791 129 48 0 1 129 1 129 9.91e-55 182
Msa0465240 AT4G17785.2 57.971 138 57 1 1 137 1 138 2.36e-54 182
Msa0465240 AT3G08500.1 75.926 108 26 0 9 116 27 134 2.48e-54 181
Msa0465240 AT4G17785.1 57.971 138 57 1 1 137 1 138 2.56e-54 182
Msa0465240 AT5G14340.1 49.162 179 89 1 1 179 13 189 1.10e-53 177
Msa0465240 AT1G35515.1 59.231 130 53 0 1 130 1 130 1.19e-53 176
Msa0465240 AT5G61420.2 54.167 144 66 0 1 144 1 144 1.60e-53 180
Msa0465240 AT5G62320.1 57.778 135 50 1 2 129 3 137 2.21e-53 176
Msa0465240 AT5G60890.1 59.055 127 52 0 1 127 1 127 1.04e-52 176
Msa0465240 AT2G31180.1 57.447 141 59 1 1 141 1 140 1.15e-52 174
Msa0465240 AT1G18570.1 58.140 129 54 0 6 134 7 135 3.68e-52 176
Msa0465240 AT1G74430.1 63.780 127 46 0 1 127 1 127 4.08e-52 174
Msa0465240 AT3G13540.1 60.465 129 50 1 6 133 17 145 8.57e-52 172
Msa0465240 AT3G28470.1 64.567 127 45 0 1 127 1 127 1.05e-51 174
Msa0465240 AT1G74080.1 58.015 131 55 0 1 131 1 131 1.63e-51 174
Msa0465240 AT5G07690.1 59.055 127 52 0 1 127 1 127 1.91e-51 174
Msa0465240 AT1G06180.1 66.379 116 39 0 1 116 1 116 1.32e-50 169
Msa0465240 AT5G07700.1 58.400 125 51 1 3 127 4 127 4.69e-50 170
Msa0465240 AT5G07700.2 58.400 125 51 1 3 127 4 127 4.69e-50 170
Msa0465240 AT3G23250.1 62.069 116 44 0 1 116 1 116 1.63e-48 164
Msa0465240 AT1G18710.1 56.391 133 58 0 1 133 1 133 1.91e-48 164
Msa0465240 AT1G56160.1 64.348 115 41 0 2 116 4 118 1.92e-48 165
Msa0465240 AT3G48920.1 61.983 121 43 2 9 128 15 133 4.28e-48 163
Msa0465240 AT1G79180.1 62.393 117 44 0 2 118 4 120 5.35e-48 164
Msa0465240 AT4G25560.1 66.055 109 37 0 10 118 8 116 9.76e-48 162
Msa0465240 AT5G52260.1 67.273 110 36 0 9 118 9 118 5.54e-47 160
Msa0465240 AT5G26660.2 80.682 88 17 0 45 132 14 101 2.03e-46 160
Msa0465240 AT1G16490.1 61.739 115 44 0 2 116 4 118 2.93e-46 158
Msa0465240 AT3G12820.1 61.538 117 45 0 3 119 5 121 3.60e-46 157
Msa0465240 AT2G47460.1 62.069 116 44 0 1 116 1 116 7.60e-46 160
Msa0465240 AT3G62610.1 61.207 116 45 0 1 116 1 116 9.07e-46 159
Msa0465240 AT5G49330.1 55.224 134 59 1 1 133 1 134 2.02e-45 158
Msa0465240 AT5G35550.1 48.023 177 87 3 9 180 11 187 2.93e-45 155
Msa0465240 AT5G57620.1 58.475 118 48 1 1 117 1 118 3.38e-45 157
Msa0465240 AT5G65790.1 58.333 120 49 1 1 119 1 120 4.47e-45 158
Msa0465240 AT5G23000.1 59.322 118 47 1 1 117 1 118 5.31e-45 157
Msa0465240 AT3G49690.1 58.333 120 49 1 1 119 1 120 1.23e-44 155
Msa0465240 AT5G14750.1 60.577 104 41 0 13 116 17 120 6.13e-44 150
Msa0465240 AT3G47600.1 59.322 118 48 0 1 118 1 118 1.71e-43 153
Msa0465240 AT1G74650.1 59.829 117 47 0 1 117 1 117 3.67e-43 152
Msa0465240 AT5G62470.2 59.322 118 48 0 1 118 1 118 5.14e-43 152
Msa0465240 AT1G08810.1 58.197 122 51 0 1 122 1 122 6.13e-43 150
Msa0465240 AT2G36890.1 52.308 130 60 2 1 129 1 129 1.02e-42 150
Msa0465240 AT3G01530.1 55.556 117 52 0 12 128 25 141 1.19e-42 147
Msa0465240 AT5G40330.1 59.615 104 42 0 13 116 13 116 1.31e-42 147
Msa0465240 AT2G36890.2 52.308 130 60 2 1 129 42 170 1.65e-42 150
Msa0465240 AT3G27920.1 56.481 108 47 0 10 117 12 119 2.43e-42 147
Msa0465240 AT4G37780.1 56.557 122 51 2 1 120 1 122 7.37e-42 148
Msa0465240 AT5G62470.1 59.322 118 47 1 1 118 1 117 3.64e-41 147
Msa0465240 AT1G79180.2 48.667 150 44 1 2 118 4 153 4.73e-41 146
Msa0465240 AT5G40350.1 56.364 110 48 0 11 120 16 125 5.72e-41 143
Msa0465240 AT5G52600.1 57.944 107 45 0 9 115 9 115 6.25e-41 142
Msa0465240 AT5G55020.1 60.909 110 42 1 12 121 26 134 6.92e-41 150
Msa0465240 AT3G28910.1 57.627 118 50 0 1 118 1 118 1.06e-40 145
Msa0465240 AT3G24310.1 58.333 108 45 0 8 115 14 121 1.29e-40 144
Msa0465240 AT4G26930.1 59.091 110 44 1 12 121 19 127 1.49e-40 146
Msa0465240 AT4G13480.1 59.259 108 44 0 8 115 2 109 2.25e-40 142
Msa0465240 AT1G48000.1 46.341 164 70 4 11 172 31 178 2.97e-40 142
Msa0465240 AT3G27810.1 54.054 111 51 0 11 121 19 129 1.00e-39 140
Msa0465240 AT5G06100.1 58.654 104 43 0 12 115 32 135 2.22e-39 145
Msa0465240 AT2G26960.1 48.227 141 60 2 7 136 15 153 6.62e-39 143
Msa0465240 AT5G06100.5 58.654 104 43 0 12 115 32 135 8.45e-39 144
Msa0465240 AT5G06100.2 58.654 104 43 0 12 115 32 135 8.45e-39 144
Msa0465240 AT5G06100.3 58.654 104 43 0 12 115 32 135 8.45e-39 144
Msa0465240 AT5G06100.4 58.654 104 43 0 12 115 32 135 8.45e-39 144
Msa0465240 AT1G68320.1 52.500 120 57 0 10 129 17 136 1.03e-38 139
Msa0465240 AT2G32460.1 51.613 124 49 1 10 122 16 139 1.76e-38 143
Msa0465240 AT3G30210.1 60.784 102 40 0 13 114 28 129 1.78e-38 138
Msa0465240 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.79e-38 142
Msa0465240 AT3G11440.2 55.769 104 46 0 12 115 41 144 3.54e-38 142
Msa0465240 AT1G25340.1 40.000 195 97 4 13 188 19 212 9.01e-38 136
Msa0465240 AT3G11440.3 55.769 104 46 0 12 115 41 144 1.58e-37 141
Msa0465240 AT3G11440.4 55.769 104 46 0 12 115 41 144 1.58e-37 141
Msa0465240 AT3G11440.1 55.769 104 46 0 12 115 41 144 1.58e-37 141
Msa0465240 AT5G59780.3 51.786 112 54 0 8 119 4 115 1.61e-37 134
Msa0465240 AT3G46130.1 53.271 107 50 0 13 119 10 116 1.06e-36 133
Msa0465240 AT1G66370.1 55.769 104 46 0 12 115 8 111 1.45e-35 130
Msa0465240 AT3G53200.1 52.252 111 53 0 9 119 6 116 1.60e-35 129
Msa0465240 AT2G47190.1 50.962 104 51 0 12 115 20 123 5.73e-35 129
Msa0465240 AT3G06490.1 58.252 103 43 0 12 114 19 121 3.38e-34 128
Msa0465240 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.06e-33 121
Msa0465240 AT2G26950.1 45.299 117 63 1 5 121 9 124 2.89e-33 127
Msa0465240 AT3G12820.2 72.222 72 20 0 48 119 2 73 4.29e-33 121
Msa0465240 AT5G35550.2 48.951 143 68 3 43 180 48 190 4.77e-33 123
Msa0465240 AT3G60460.1 51.327 113 54 1 3 114 2 114 4.84e-33 124
Msa0465240 AT1G25340.2 38.462 195 95 5 13 188 19 207 6.37e-33 124
Msa0465240 AT1G25340.3 49.194 124 57 2 13 136 19 136 1.14e-32 124
Msa0465240 AT1G56650.1 57.692 104 44 0 12 115 8 111 2.32e-32 121
Msa0465240 AT5G49620.1 55.340 103 46 0 12 114 26 128 4.55e-32 122
Msa0465240 AT1G66390.1 56.604 106 46 0 10 115 6 111 8.58e-32 120
Msa0465240 AT5G14750.3 69.565 69 21 0 48 116 18 86 4.71e-31 115
Msa0465240 AT5G40350.2 59.211 76 31 0 45 120 5 80 4.76e-29 110
Msa0465240 AT5G02320.1 35.223 247 127 11 8 234 121 354 6.88e-29 117
Msa0465240 AT5G02320.2 35.223 247 127 11 8 234 121 354 6.88e-29 117
Msa0465240 AT5G02320.3 35.223 247 127 11 8 234 61 294 7.80e-29 116
Msa0465240 AT3G47600.2 54.737 95 39 1 24 118 22 112 1.30e-28 113
Msa0465240 AT5G49620.2 48.718 117 46 1 12 114 26 142 1.96e-28 112
Msa0465240 AT3G27810.2 55.844 77 34 0 45 121 4 80 4.29e-28 108
Msa0465240 AT1G22640.3 62.857 70 26 0 58 127 1 70 6.65e-28 108
Msa0465240 AT3G27785.1 43.966 116 60 3 3 115 176 289 7.77e-28 113
Msa0465240 AT3G46130.3 56.627 83 34 1 44 124 9 91 8.73e-28 108
Msa0465240 AT1G18960.1 45.600 125 60 4 6 129 5 122 1.66e-27 110
Msa0465240 AT3G46130.4 60.000 75 30 0 45 119 20 94 2.73e-27 107
Msa0465240 AT5G59780.2 60.000 75 30 0 45 119 20 94 3.01e-27 107
Msa0465240 AT3G09370.1 31.868 273 136 11 8 247 124 379 4.63e-27 111
Msa0465240 AT1G71030.2 56.471 85 35 1 51 133 5 89 5.02e-27 105
Msa0465240 AT3G09370.2 31.868 273 136 11 8 247 129 384 5.12e-27 111
Msa0465240 AT1G71030.1 56.471 85 35 1 51 133 19 103 6.27e-27 105
Msa0465240 AT3G09370.3 31.868 273 136 11 8 247 137 392 1.01e-26 110
Msa0465240 AT4G18770.1 43.750 112 60 2 9 119 212 321 1.07e-26 109
Msa0465240 AT3G53200.2 60.000 75 30 0 45 119 9 83 6.04e-26 103
Msa0465240 AT5G67300.1 49.515 103 49 2 14 115 6 106 6.69e-26 105
Msa0465240 AT2G39880.1 50.467 107 50 2 14 119 50 154 7.53e-26 106
Msa0465240 AT4G37260.1 49.074 108 52 2 14 120 13 118 5.82e-25 103
Msa0465240 AT5G58850.1 44.037 109 58 2 12 119 103 209 7.09e-25 104
Msa0465240 AT1G66380.3 59.740 77 31 0 39 115 2 78 1.19e-24 96.7
Msa0465240 AT5G40360.1 40.566 106 62 1 9 114 153 257 1.21e-24 103
Msa0465240 AT3G50060.1 48.544 103 50 2 14 115 6 106 1.38e-24 102
Msa0465240 AT2G23290.1 51.456 103 47 2 14 115 13 113 1.97e-24 101
Msa0465240 AT1G69560.1 42.105 114 63 2 7 119 100 211 2.56e-24 101
Msa0465240 AT5G11510.3 46.364 110 56 2 8 116 75 182 2.81e-24 104
Msa0465240 AT5G11510.1 46.364 110 56 2 8 116 75 182 2.81e-24 104
Msa0465240 AT5G11510.4 46.364 110 56 2 8 116 75 182 2.81e-24 104
Msa0465240 AT3G09230.1 48.571 105 51 2 14 117 55 157 3.43e-24 102
Msa0465240 AT5G11510.2 46.364 110 56 2 8 116 75 182 3.52e-24 103
Msa0465240 AT5G11510.5 46.364 110 56 2 8 116 75 182 3.53e-24 103
Msa0465240 AT1G69560.2 41.739 115 64 2 7 120 116 228 3.56e-24 101
Msa0465240 AT3G55730.1 51.456 103 47 2 14 115 56 156 3.69e-24 102
Msa0465240 AT5G11050.1 39.516 124 72 2 14 136 105 226 3.91e-24 102
Msa0465240 AT3G23250.2 69.492 59 18 0 58 116 1 59 9.71e-24 97.8
Msa0465240 AT1G26780.1 43.810 105 56 2 12 115 96 198 2.57e-23 97.8
Msa0465240 AT1G17950.1 44.660 103 54 2 14 115 5 105 2.58e-23 97.4
Msa0465240 AT4G32730.1 44.545 110 58 2 8 116 81 188 5.30e-23 100
Msa0465240 AT4G32730.5 44.545 110 58 2 8 116 81 188 5.49e-23 100
Msa0465240 AT4G32730.4 44.545 110 58 2 8 116 81 188 5.49e-23 100
Msa0465240 AT4G32730.3 44.545 110 58 2 8 116 81 188 5.49e-23 100
Msa0465240 AT4G32730.2 44.545 110 58 2 8 116 81 188 5.49e-23 100
Msa0465240 AT1G26780.2 43.810 105 56 2 12 115 96 198 6.84e-23 98.2
Msa0465240 AT2G25230.1 39.823 113 65 2 9 120 21 131 5.26e-22 93.2
Msa0465240 AT5G14750.4 64.407 59 21 0 58 116 1 59 7.51e-22 90.5
Msa0465240 AT5G14750.2 64.407 59 21 0 58 116 1 59 7.51e-22 90.5
Msa0465240 AT3G29020.1 37.719 114 68 2 7 119 58 169 2.77e-21 91.3
Msa0465240 AT1G73410.1 43.689 103 55 2 14 115 6 106 2.89e-21 91.7
Msa0465240 AT3G29020.2 37.719 114 68 2 7 119 60 171 3.70e-21 92.4
Msa0465240 AT1G73410.2 43.689 103 55 2 14 115 6 106 6.73e-21 89.7
Msa0465240 AT1G66380.2 56.250 80 35 0 10 89 6 85 1.23e-20 86.3
Msa0465240 AT5G17800.1 41.176 102 59 1 14 115 93 193 1.35e-20 91.3
Msa0465240 AT4G33450.1 38.393 112 66 2 5 115 10 119 2.83e-20 89.0
Msa0465240 AT4G00540.2 42.478 113 59 3 8 116 97 207 2.52e-19 88.6
Msa0465240 AT4G00540.1 42.478 113 59 3 8 116 95 205 4.76e-19 88.2
Msa0465240 AT5G40430.1 36.283 113 68 3 9 120 49 158 5.92e-18 82.8
Msa0465240 AT2G37630.1 34.014 147 74 2 17 161 7 132 8.12e-18 84.0
Msa0465240 AT2G02820.3 36.190 105 66 1 17 121 33 136 1.12e-16 80.1
Msa0465240 AT5G61420.1 53.125 64 30 0 81 144 2 65 1.23e-16 79.3
Msa0465240 AT2G02820.1 36.190 105 66 1 17 121 33 136 1.29e-16 80.9
Msa0465240 AT2G02820.2 36.190 105 66 1 17 121 33 136 2.04e-16 80.5
Msa0465240 AT1G14350.2 33.083 133 83 2 17 144 28 159 4.31e-16 79.3
Msa0465240 AT1G14350.1 33.083 133 83 2 17 144 28 159 4.31e-16 79.3
Msa0465240 AT5G39700.1 35.135 111 71 1 9 119 51 160 1.91e-15 74.3
Msa0465240 AT4G25560.2 62.000 50 19 0 69 118 1 50 1.02e-14 72.8
Msa0465240 AT4G28110.2 66.667 39 13 0 88 126 4 42 2.09e-13 68.6
Msa0465240 AT1G74430.2 58.824 51 21 0 77 127 8 58 2.33e-13 68.6
Msa0465240 AT5G15310.3 70.000 40 12 0 88 127 9 48 4.42e-13 68.6
Msa0465240 AT1G22640.2 62.500 40 15 0 88 127 16 55 5.89e-13 67.0
Msa0465240 AT3G46130.2 51.852 54 24 1 73 124 4 57 1.48e-12 65.9
Msa0465240 AT5G59780.1 52.000 50 24 0 70 119 1 50 1.59e-12 65.5
Msa0465240 AT3G18100.3 29.078 141 85 5 13 147 497 628 1.08e-11 66.6
Msa0465240 AT3G18100.1 27.536 138 91 3 13 147 545 676 1.21e-11 66.2
Msa0465240 AT3G18100.4 29.078 141 85 5 13 147 384 515 1.45e-11 65.9
Msa0465240 AT3G18100.2 29.078 141 85 5 13 147 332 463 1.91e-11 65.5
Msa0465240 AT5G14340.2 35.870 92 57 1 88 179 10 99 2.31e-11 62.4
Msa0465240 AT1G74650.3 65.854 41 14 0 77 117 1 41 7.55e-11 62.0
Msa0465240 AT1G14350.3 34.043 94 57 1 56 144 23 116 9.26e-11 63.2
Msa0465240 AT1G14350.4 34.043 94 57 1 56 144 23 116 9.26e-11 63.2

Find 61 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAAGGAGAATTAAATT+TGG 0.218847 3_3:-65591843 None:intergenic
AAAAGCTTCTCATCTTCTTC+AGG 0.263770 3_3:-65590897 None:intergenic
TCTTCTGACAGTGACGTTAA+AGG 0.287115 3_3:-65592016 None:intergenic
TTCAATTACATAACCATGTT+TGG 0.314366 3_3:+65590918 Msa0465240:CDS
TAATATTGATTCTCTTATAA+AGG 0.320611 3_3:+65591457 Msa0465240:CDS
ATTAATCACTATAATATTAG+TGG 0.332071 3_3:+65591605 Msa0465240:CDS
ATATTATTACCAGCTAGTTT+AGG 0.367192 3_3:-65590963 None:intergenic
CAATTTGAACAGAACCAGTT+TGG 0.373684 3_3:+65591740 Msa0465240:CDS
TTCCAAATTTAATTCTCCTT+TGG 0.376200 3_3:+65591841 Msa0465240:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.380038 3_3:+65591196 Msa0465240:CDS
AACATTCCTCTCTTCAAATC+AGG 0.399385 3_3:-65591141 None:intergenic
TGCTTGAATTGGTTCCAAAC+TGG 0.411620 3_3:-65591754 None:intergenic
TTTGCTTTAAAGAACAGAAA+TGG 0.411738 3_3:-65590851 None:intergenic
AGAGAAGAAAGTGCTTGAAT+TGG 0.414379 3_3:-65591765 None:intergenic
TTCTGTTGTCCTCACAAACA+TGG 0.420223 3_3:+65590824 Msa0465240:exon
CCTTGTTGGTGAAACAATGT+AGG 0.437149 3_3:+65592111 Msa0465240:three_prime_UTR
TCATCAACAAGACAAGTTCA+TGG 0.452321 3_3:+65591945 Msa0465240:CDS
AATTATATGGTGAGGGAAAG+GGG 0.469404 3_3:-65592206 None:intergenic
AAAGCTTCTCATCTTCTTCA+GGG 0.470762 3_3:-65590896 None:intergenic
ATCTCATTATCTGTTCTCCC+TGG 0.474483 3_3:-65591353 None:intergenic
TACATAACCATGTTTGGTGT+TGG 0.474556 3_3:+65590924 Msa0465240:CDS
CAAATTGCAGCACAATTACC+AGG 0.477311 3_3:+65591335 Msa0465240:CDS
ATGCAGGTGGATTAATCTCA+TGG 0.478338 3_3:+65591909 Msa0465240:CDS
TGAGATGGATCAACTATTTG+AGG 0.483337 3_3:+65591118 Msa0465240:CDS
TCTTATGAATAAGCCAACAT+TGG 0.485974 3_3:+65591658 Msa0465240:CDS
ATGAAGTGTTTATGAGTAGC+TGG 0.500962 3_3:-65591431 None:intergenic
TGTTCAAATTGTAATAGACT+TGG 0.511263 3_3:-65591728 None:intergenic
CCATGTTTGGTGTTGGATGT+TGG 0.512330 3_3:+65590931 Msa0465240:CDS
CCTACATTGTTTCACCAACA+AGG 0.512912 3_3:-65592111 None:intergenic
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 3_3:+65590954 Msa0465240:CDS
ATCAATCTTCATGAAGCACT+TGG 0.519187 3_3:+65591189 Msa0465240:CDS
TTCTCTTATAAAGGAAGAGA+AGG 0.526947 3_3:+65591466 Msa0465240:CDS
TTGAGGCCTGATTTGAAGAG+AGG 0.529236 3_3:+65591135 Msa0465240:CDS
ATTATATGGTGAGGGAAAGG+GGG 0.530036 3_3:-65592205 None:intergenic
GACAGTGGCATTATCATCGA+TGG 0.531006 3_3:-65591494 None:intergenic
CCAACATCCAACACCAAACA+TGG 0.541756 3_3:-65590931 None:intergenic
AATGGATCAAAATCCAATGT+TGG 0.546744 3_3:-65591671 None:intergenic
ATGCTTAAATTGTAGTACAA+TGG 0.547362 3_3:-65591689 None:intergenic
TCTGTTGTCCTCACAAACAT+GGG 0.550136 3_3:+65590825 Msa0465240:exon
ATTTCAGGGTTGCAAAGGTG+TGG 0.550921 3_3:+65591081 Msa0465240:intron
AAATTATTTCAGGGTTGCAA+AGG 0.557540 3_3:+65591076 Msa0465240:intron
TGCTTCTGAGTATTCTTGTG+AGG 0.558944 3_3:-65591564 None:intergenic
TAGTAAGATGTTGATAGCAT+AGG 0.561715 3_3:+65592143 Msa0465240:three_prime_UTR
CTACATTGTTTCACCAACAA+GGG 0.563442 3_3:-65592110 None:intergenic
TGTGTAGCTAGAATTCTTTG+AGG 0.566060 3_3:-65591527 None:intergenic
TTATATGGTGAGGGAAAGGG+GGG 0.570239 3_3:-65592204 None:intergenic
AACATGATTAATGAAAATGC+AGG 0.582343 3_3:+65591893 Msa0465240:CDS
GAAAGAGTTGTAGATTGAGA+TGG 0.584976 3_3:+65591103 Msa0465240:CDS
TGCAGGTGGATTAATCTCAT+GGG 0.586240 3_3:+65591910 Msa0465240:CDS
AGGAATGTTCTCAAAACAAG+AGG 0.587388 3_3:+65591155 Msa0465240:CDS
ATGATTAATGAAAATGCAGG+TGG 0.597024 3_3:+65591896 Msa0465240:CDS
AAGCTTCTCATCTTCTTCAG+GGG 0.607980 3_3:-65590895 None:intergenic
TAATTACTTTCATTCACCAA+AGG 0.610472 3_3:-65591857 None:intergenic
AATGGCGACCCATGTTTGTG+AGG 0.614878 3_3:-65590833 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 3_3:+65591401 Msa0465240:CDS
AACAAGACAAGTTCATGGCA+AGG 0.635618 3_3:+65591950 Msa0465240:CDS
AGAAGAAACTAATGAAACAA+GGG 0.641105 3_3:+65591402 Msa0465240:CDS
GGTGGATTAATCTCATGGGA+AGG 0.658836 3_3:+65591914 Msa0465240:CDS
TGAGGTTGAGAGTGAGACAG+TGG 0.658988 3_3:-65591509 None:intergenic
AATTCTGAACTATTTAGACA+AGG 0.663276 3_3:-65591794 None:intergenic
AAATTGCAGCACAATTACCA+GGG 0.707909 3_3:+65591336 Msa0465240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATCAAAATTATTTC+AGG + chr3_3:65591066-65591085 Msa0465240:intron 10.0%
!! TATTAATCAAAATTATTTCA+GGG + chr3_3:65591067-65591086 Msa0465240:intron 10.0%
!! TTATTAATCAAAATTATTTC+AGG + chr3_3:65591066-65591085 Msa0465240:intron 10.0%
!! TATTAATCAAAATTATTTCA+GGG + chr3_3:65591067-65591086 Msa0465240:intron 10.0%
!!! ATAATGAGATAAAAAACTTT+TGG + chr3_3:65591366-65591385 Msa0465240:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG + chr3_3:65591457-65591476 Msa0465240:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG + chr3_3:65591605-65591624 Msa0465240:CDS 15.0%
!! AAAAAAAAACAGTTCATAAA+TGG - chr3_3:65592078-65592097 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG + chr3_3:65591366-65591385 Msa0465240:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG + chr3_3:65591457-65591476 Msa0465240:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG + chr3_3:65591605-65591624 Msa0465240:CDS 15.0%
!! AAAAAAAAACAGTTCATAAA+TGG - chr3_3:65592078-65592097 None:intergenic 15.0%
!! TTAAAGCAAAAACTAAGAAA+AGG + chr3_3:65590864-65590883 Msa0465240:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG + chr3_3:65590871-65590890 Msa0465240:CDS 20.0%
!! TTAATAATTTCAAATGTCTC+AGG + chr3_3:65591306-65591325 Msa0465240:intron 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG + chr3_3:65590864-65590883 Msa0465240:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG + chr3_3:65590871-65590890 Msa0465240:CDS 20.0%
!! TTAATAATTTCAAATGTCTC+AGG + chr3_3:65591306-65591325 Msa0465240:intron 20.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG - chr3_3:65590854-65590873 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG + chr3_3:65590918-65590937 Msa0465240:CDS 25.0%
!! ATATTATTACCAGCTAGTTT+AGG - chr3_3:65590966-65590985 None:intergenic 25.0%
! CGTTGTAAAGTAAAAAGATA+AGG - chr3_3:65591039-65591058 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG + chr3_3:65591401-65591420 Msa0465240:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG + chr3_3:65591402-65591421 Msa0465240:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG - chr3_3:65591692-65591711 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG - chr3_3:65591731-65591750 None:intergenic 25.0%
! AATTCTGAACTATTTAGACA+AGG - chr3_3:65591797-65591816 None:intergenic 25.0%
! TTCCAAATTTAATTCTCCTT+TGG + chr3_3:65591841-65591860 Msa0465240:CDS 25.0%
! TAATTACTTTCATTCACCAA+AGG - chr3_3:65591860-65591879 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG + chr3_3:65591893-65591912 Msa0465240:CDS 25.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG - chr3_3:65590854-65590873 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG + chr3_3:65590918-65590937 Msa0465240:CDS 25.0%
!! ATATTATTACCAGCTAGTTT+AGG - chr3_3:65590966-65590985 None:intergenic 25.0%
! CGTTGTAAAGTAAAAAGATA+AGG - chr3_3:65591039-65591058 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG + chr3_3:65591401-65591420 Msa0465240:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG + chr3_3:65591402-65591421 Msa0465240:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG - chr3_3:65591692-65591711 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG - chr3_3:65591731-65591750 None:intergenic 25.0%
! AATTCTGAACTATTTAGACA+AGG - chr3_3:65591797-65591816 None:intergenic 25.0%
! TTCCAAATTTAATTCTCCTT+TGG + chr3_3:65591841-65591860 Msa0465240:CDS 25.0%
! TAATTACTTTCATTCACCAA+AGG - chr3_3:65591860-65591879 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG + chr3_3:65591893-65591912 Msa0465240:CDS 25.0%
AAATTATTTCAGGGTTGCAA+AGG + chr3_3:65591076-65591095 Msa0465240:intron 30.0%
ATAATTTCAAATGTCTCAGG+TGG + chr3_3:65591309-65591328 Msa0465240:intron 30.0%
TAATTTCAAATGTCTCAGGT+GGG + chr3_3:65591310-65591329 Msa0465240:intron 30.0%
TTCTCTTATAAAGGAAGAGA+AGG + chr3_3:65591466-65591485 Msa0465240:CDS 30.0%
TCTTATGAATAAGCCAACAT+TGG + chr3_3:65591658-65591677 Msa0465240:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG - chr3_3:65591674-65591693 None:intergenic 30.0%
CACCAAAGGAGAATTAAATT+TGG - chr3_3:65591846-65591865 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG + chr3_3:65591896-65591915 Msa0465240:CDS 30.0%
!! TAGTAAGATGTTGATAGCAT+AGG + chr3_3:65592143-65592162 Msa0465240:three_prime_UTR 30.0%
AAATTATTTCAGGGTTGCAA+AGG + chr3_3:65591076-65591095 Msa0465240:intron 30.0%
ATAATTTCAAATGTCTCAGG+TGG + chr3_3:65591309-65591328 Msa0465240:intron 30.0%
TAATTTCAAATGTCTCAGGT+GGG + chr3_3:65591310-65591329 Msa0465240:intron 30.0%
TTCTCTTATAAAGGAAGAGA+AGG + chr3_3:65591466-65591485 Msa0465240:CDS 30.0%
TCTTATGAATAAGCCAACAT+TGG + chr3_3:65591658-65591677 Msa0465240:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG - chr3_3:65591674-65591693 None:intergenic 30.0%
CACCAAAGGAGAATTAAATT+TGG - chr3_3:65591846-65591865 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG + chr3_3:65591896-65591915 Msa0465240:CDS 30.0%
!! TAGTAAGATGTTGATAGCAT+AGG + chr3_3:65592143-65592162 Msa0465240:three_prime_UTR 30.0%
CAACAGAAAAAAGGACACAA+AGG - chr3_3:65590812-65590831 None:intergenic 35.0%
TTGTGAGGACAACAGAAAAA+AGG - chr3_3:65590821-65590840 None:intergenic 35.0%
AAAGCTTCTCATCTTCTTCA+GGG - chr3_3:65590899-65590918 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG - chr3_3:65590900-65590919 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG + chr3_3:65590924-65590943 Msa0465240:CDS 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr3_3:65591103-65591122 Msa0465240:CDS 35.0%
TGAGATGGATCAACTATTTG+AGG + chr3_3:65591118-65591137 Msa0465240:CDS 35.0%
AACATTCCTCTCTTCAAATC+AGG - chr3_3:65591144-65591163 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG + chr3_3:65591155-65591174 Msa0465240:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG + chr3_3:65591189-65591208 Msa0465240:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG + chr3_3:65591196-65591215 Msa0465240:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG + chr3_3:65591336-65591355 Msa0465240:CDS 35.0%
! ATGAAGTGTTTATGAGTAGC+TGG - chr3_3:65591434-65591453 None:intergenic 35.0%
TGTGTAGCTAGAATTCTTTG+AGG - chr3_3:65591530-65591549 None:intergenic 35.0%
CAATTTGAACAGAACCAGTT+TGG + chr3_3:65591740-65591759 Msa0465240:CDS 35.0%
!! AGAGAAGAAAGTGCTTGAAT+TGG - chr3_3:65591768-65591787 None:intergenic 35.0%
TCATCAACAAGACAAGTTCA+TGG + chr3_3:65591945-65591964 Msa0465240:CDS 35.0%
!! TGTTGAACTTTTTCCCTTGT+TGG + chr3_3:65592097-65592116 Msa0465240:three_prime_UTR 35.0%
CTACATTGTTTCACCAACAA+GGG - chr3_3:65592113-65592132 None:intergenic 35.0%
CAACAGAAAAAAGGACACAA+AGG - chr3_3:65590812-65590831 None:intergenic 35.0%
TTGTGAGGACAACAGAAAAA+AGG - chr3_3:65590821-65590840 None:intergenic 35.0%
AAAGCTTCTCATCTTCTTCA+GGG - chr3_3:65590899-65590918 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG - chr3_3:65590900-65590919 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG + chr3_3:65590924-65590943 Msa0465240:CDS 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr3_3:65591103-65591122 Msa0465240:CDS 35.0%
TGAGATGGATCAACTATTTG+AGG + chr3_3:65591118-65591137 Msa0465240:CDS 35.0%
AACATTCCTCTCTTCAAATC+AGG - chr3_3:65591144-65591163 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG + chr3_3:65591155-65591174 Msa0465240:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG + chr3_3:65591189-65591208 Msa0465240:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG + chr3_3:65591196-65591215 Msa0465240:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG + chr3_3:65591336-65591355 Msa0465240:CDS 35.0%
! ATGAAGTGTTTATGAGTAGC+TGG - chr3_3:65591434-65591453 None:intergenic 35.0%
TGTGTAGCTAGAATTCTTTG+AGG - chr3_3:65591530-65591549 None:intergenic 35.0%
CAATTTGAACAGAACCAGTT+TGG + chr3_3:65591740-65591759 Msa0465240:CDS 35.0%
!! AGAGAAGAAAGTGCTTGAAT+TGG - chr3_3:65591768-65591787 None:intergenic 35.0%
TCATCAACAAGACAAGTTCA+TGG + chr3_3:65591945-65591964 Msa0465240:CDS 35.0%
!! TGTTGAACTTTTTCCCTTGT+TGG + chr3_3:65592097-65592116 Msa0465240:three_prime_UTR 35.0%
CTACATTGTTTCACCAACAA+GGG - chr3_3:65592113-65592132 None:intergenic 35.0%
TTCTGTTGTCCTCACAAACA+TGG + chr3_3:65590824-65590843 Msa0465240:exon 40.0%
TCTGTTGTCCTCACAAACAT+GGG + chr3_3:65590825-65590844 Msa0465240:exon 40.0%
AAGCTTCTCATCTTCTTCAG+GGG - chr3_3:65590898-65590917 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG + chr3_3:65590954-65590973 Msa0465240:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG + chr3_3:65591335-65591354 Msa0465240:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG - chr3_3:65591356-65591375 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG - chr3_3:65591567-65591586 None:intergenic 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG - chr3_3:65591757-65591776 None:intergenic 40.0%
!! ATGCAGGTGGATTAATCTCA+TGG + chr3_3:65591909-65591928 Msa0465240:CDS 40.0%
!! TGCAGGTGGATTAATCTCAT+GGG + chr3_3:65591910-65591929 Msa0465240:CDS 40.0%
AACAAGACAAGTTCATGGCA+AGG + chr3_3:65591950-65591969 Msa0465240:CDS 40.0%
TCTTCTGACAGTGACGTTAA+AGG - chr3_3:65592019-65592038 None:intergenic 40.0%
CCTACATTGTTTCACCAACA+AGG - chr3_3:65592114-65592133 None:intergenic 40.0%
! CCTTGTTGGTGAAACAATGT+AGG + chr3_3:65592111-65592130 Msa0465240:three_prime_UTR 40.0%
TTCTGTTGTCCTCACAAACA+TGG + chr3_3:65590824-65590843 Msa0465240:exon 40.0%
TCTGTTGTCCTCACAAACAT+GGG + chr3_3:65590825-65590844 Msa0465240:exon 40.0%
AAGCTTCTCATCTTCTTCAG+GGG - chr3_3:65590898-65590917 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG + chr3_3:65590954-65590973 Msa0465240:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG + chr3_3:65591335-65591354 Msa0465240:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG - chr3_3:65591356-65591375 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG - chr3_3:65591567-65591586 None:intergenic 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG - chr3_3:65591757-65591776 None:intergenic 40.0%
!! ATGCAGGTGGATTAATCTCA+TGG + chr3_3:65591909-65591928 Msa0465240:CDS 40.0%
!! TGCAGGTGGATTAATCTCAT+GGG + chr3_3:65591910-65591929 Msa0465240:CDS 40.0%
AACAAGACAAGTTCATGGCA+AGG + chr3_3:65591950-65591969 Msa0465240:CDS 40.0%
TCTTCTGACAGTGACGTTAA+AGG - chr3_3:65592019-65592038 None:intergenic 40.0%
CCTACATTGTTTCACCAACA+AGG - chr3_3:65592114-65592133 None:intergenic 40.0%
! CCTTGTTGGTGAAACAATGT+AGG + chr3_3:65592111-65592130 Msa0465240:three_prime_UTR 40.0%
CCAACATCCAACACCAAACA+TGG - chr3_3:65590934-65590953 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG + chr3_3:65590931-65590950 Msa0465240:CDS 45.0%
ATTTCAGGGTTGCAAAGGTG+TGG + chr3_3:65591081-65591100 Msa0465240:intron 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG + chr3_3:65591135-65591154 Msa0465240:CDS 45.0%
GACAGTGGCATTATCATCGA+TGG - chr3_3:65591497-65591516 None:intergenic 45.0%
!! GGTGGATTAATCTCATGGGA+AGG + chr3_3:65591914-65591933 Msa0465240:CDS 45.0%
CCAACATCCAACACCAAACA+TGG - chr3_3:65590934-65590953 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG + chr3_3:65590931-65590950 Msa0465240:CDS 45.0%
ATTTCAGGGTTGCAAAGGTG+TGG + chr3_3:65591081-65591100 Msa0465240:intron 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG + chr3_3:65591135-65591154 Msa0465240:CDS 45.0%
GACAGTGGCATTATCATCGA+TGG - chr3_3:65591497-65591516 None:intergenic 45.0%
!! GGTGGATTAATCTCATGGGA+AGG + chr3_3:65591914-65591933 Msa0465240:CDS 45.0%
AATGGCGACCCATGTTTGTG+AGG - chr3_3:65590836-65590855 None:intergenic 50.0%
TGAGGTTGAGAGTGAGACAG+TGG - chr3_3:65591512-65591531 None:intergenic 50.0%
AATGGCGACCCATGTTTGTG+AGG - chr3_3:65590836-65590855 None:intergenic 50.0%
TGAGGTTGAGAGTGAGACAG+TGG - chr3_3:65591512-65591531 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65590796 65592213 65590796 ID=Msa0465240;Name=Msa0465240
chr3_3 mRNA 65590796 65592213 65590796 ID=Msa0465240-mRNA-1;Parent=Msa0465240;Name=Msa0465240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=47|1|1|1|1|1|3|129|339
chr3_3 exon 65590796 65590975 65590796 ID=Msa0465240-mRNA-1:exon:14615;Parent=Msa0465240-mRNA-1
chr3_3 exon 65591088 65591217 65591088 ID=Msa0465240-mRNA-1:exon:14616;Parent=Msa0465240-mRNA-1
chr3_3 exon 65591328 65592213 65591328 ID=Msa0465240-mRNA-1:exon:14617;Parent=Msa0465240-mRNA-1
chr3_3 five_prime_UTR 65590796 65590842 65590796 ID=Msa0465240-mRNA-1:five_prime_utr;Parent=Msa0465240-mRNA-1
chr3_3 CDS 65590843 65590975 65590843 ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3 CDS 65591088 65591217 65591088 ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3 CDS 65591328 65592084 65591328 ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3 three_prime_UTR 65592085 65592213 65592085 ID=Msa0465240-mRNA-1:three_prime_utr;Parent=Msa0465240-mRNA-1
Gene Sequence

>Msa0465240

ATGGGTCGCCATTTCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATCAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATTATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACTCATAAACACTTCATCAATAATATTGATTCTCTTATAAAGGAAGAGAAGGAAAAACCATCGATGATAATGCCACTGTCTCACTCTCAACCTCAAAGAATTCTAGCTACACACTCAATGCTAGAATCCTCACAAGAATACTCAGAAGCACTTCTAATGAGTGATTTGATTAATCACTATAATATTAGTGGATTAGCTTTAACAGAAGCTTCAAGAAAAATTCTTATGAATAAGCCAACATTGGATTTTGATCCATTGTACTACAATTTAAGCATGAACAATTATTATCAGCCAAGTCTATTACAATTTGAACAGAACCAGTTTGGAACCAATTCAAGCACTTTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGAATTTTCAGACAATATCAACAACTCAGTTTCCAAATTTAATTCTCCTTTGGTGAATGAAAGTAATTATTATCAAATGAGCAACATGATTAATGAAAATGCAGGTGGATTAATCTCATGGGAAGGTGAAGAATTCATCAACAAGACAAGTTCATGGCAAGGACAGATGCTGAGTCATAATAATTCAATAGATTTCAGTACATATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTTCACCATTTATGA
Protein sequence

>Msa0465240

MGRHFCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKHFINNIDSLIKEEKEKPSMIMPLSHSQPQRILATHSMLESSQEYSEALLMSDLINHYNISGLALTEASRKILMNKPTLDFDPLYYNLSMNNYYQPSLLQFEQNQFGTNSSTFFSSMPCLNSSEFSDNINNSVSKFNSPLVNESNYYQMSNMINENAGGLISWEGEEFINKTSSWQGQMLSHNNSIDFSTYPLTSLSEDLSNIEANFDVFHHL*