AlfalfaGEDB | Msa0465240

M. sativa cultivar zhongmu-4 / Msa0465240

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465240	XP_003601199.1	91.691	349	19	2	1	339	1	349	0.0	648

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465240	sp\|Q8LPH6\|MYB86_ARATH	81.818	132	24	0	1	132	1	132	7.28e-76	240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465240	G7J4T2	91.691	349	19	2	1	339	1	349	0.0	648

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TFs/TRs:

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Gene ID	Type	Classification
Msa0465240	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465240	MtrunA17_Chr3g0117091	91.691	349	19	2	1	339	1	349	0.0	648
Msa0465240	MtrunA17_Chr1g0211161	69.759	291	22	6	3	292	4	229	5.80e-130	370
Msa0465240	MtrunA17_Chr4g0058631	54.145	386	105	15	1	339	1	361	7.89e-119	347
Msa0465240	MtrunA17_Chr7g0270891	50.781	256	118	4	1	249	1	255	9.63e-76	237
Msa0465240	MtrunA17_Chr1g0193371	83.465	127	21	0	1	127	1	127	2.50e-75	236
Msa0465240	MtrunA17_Chr1g0193801	79.528	127	26	0	1	127	1	127	9.64e-73	230
Msa0465240	MtrunA17_Chr7g0271241	81.343	134	25	0	1	134	1	134	1.57e-69	221
Msa0465240	MtrunA17_Chr2g0330041	76.000	125	30	0	1	125	1	125	2.72e-66	214
Msa0465240	MtrunA17_Chr8g0342521	75.000	124	31	0	1	124	1	124	6.77e-66	211
Msa0465240	MtrunA17_Chr8g0342541	74.194	124	32	0	1	124	1	124	2.07e-65	210

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465240	AT5G26660.1	81.818	132	24	0	1	132	1	132	7.40e-77	240
Msa0465240	AT4G01680.3	75.000	144	34	2	1	144	1	142	2.56e-74	229
Msa0465240	AT1G57560.1	80.315	127	25	0	1	127	1	127	1.59e-73	230
Msa0465240	AT1G57560.2	80.315	127	25	0	1	127	1	127	1.93e-73	228
Msa0465240	AT4G01680.1	75.000	144	34	2	1	144	1	142	3.30e-73	230
Msa0465240	AT1G09540.1	73.103	145	36	2	1	145	1	142	1.64e-72	229
Msa0465240	AT4G01680.2	69.231	156	34	3	1	144	1	154	1.84e-69	221
Msa0465240	AT3G13890.2	79.487	117	24	0	1	117	1	117	1.54e-64	208
Msa0465240	AT3G12720.1	71.429	126	35	1	1	126	12	136	7.16e-64	205
Msa0465240	AT3G13890.1	73.810	126	24	1	1	117	1	126	1.99e-61	201

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Find 61 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTCATCTTCTTC+AGG	0.263770	3_3:-65590897	None:intergenic
AAAGCTTCTCATCTTCTTCA+GGG	0.470762	3_3:-65590896	None:intergenic
AAATTATTTCAGGGTTGCAA+AGG	0.557540	3_3:+65591076	Msa0465240:intron
AAATTGCAGCACAATTACCA+GGG	0.707909	3_3:+65591336	Msa0465240:CDS
AACAAGACAAGTTCATGGCA+AGG	0.635618	3_3:+65591950	Msa0465240:CDS
AACATGATTAATGAAAATGC+AGG	0.582343	3_3:+65591893	Msa0465240:CDS
AACATTCCTCTCTTCAAATC+AGG	0.399385	3_3:-65591141	None:intergenic
AAGAAGAAACTAATGAAACA+AGG	0.624080	3_3:+65591401	Msa0465240:CDS
AAGCTTCTCATCTTCTTCAG+GGG	0.607980	3_3:-65590895	None:intergenic
AATGGATCAAAATCCAATGT+TGG	0.546744	3_3:-65591671	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTATTTCAGGGTTGCAA+AGG	+	chr3_3:65591076-65591095	Msa0465240:intron	30.0%
ATAATTTCAAATGTCTCAGG+TGG	+	chr3_3:65591309-65591328	Msa0465240:intron	30.0%
TAATTTCAAATGTCTCAGGT+GGG	+	chr3_3:65591310-65591329	Msa0465240:intron	30.0%
TTCTCTTATAAAGGAAGAGA+AGG	+	chr3_3:65591466-65591485	Msa0465240:CDS	30.0%
TCTTATGAATAAGCCAACAT+TGG	+	chr3_3:65591658-65591677	Msa0465240:CDS	30.0%
AATGGATCAAAATCCAATGT+TGG	-	chr3_3:65591674-65591693	None:intergenic	30.0%
CACCAAAGGAGAATTAAATT+TGG	-	chr3_3:65591846-65591865	None:intergenic	30.0%
ATGATTAATGAAAATGCAGG+TGG	+	chr3_3:65591896-65591915	Msa0465240:CDS	30.0%
AAATTATTTCAGGGTTGCAA+AGG	+	chr3_3:65591076-65591095	Msa0465240:intron	30.0%
ATAATTTCAAATGTCTCAGG+TGG	+	chr3_3:65591309-65591328	Msa0465240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	65590796	65592213	65590796	ID=Msa0465240;Name=Msa0465240
chr3_3	mRNA	65590796	65592213	65590796	ID=Msa0465240-mRNA-1;Parent=Msa0465240;Name=Msa0465240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=47\|1\|1\|1\|1\|1\|3\|129\|339
chr3_3	exon	65590796	65590975	65590796	ID=Msa0465240-mRNA-1:exon:14615;Parent=Msa0465240-mRNA-1
chr3_3	exon	65591088	65591217	65591088	ID=Msa0465240-mRNA-1:exon:14616;Parent=Msa0465240-mRNA-1
chr3_3	exon	65591328	65592213	65591328	ID=Msa0465240-mRNA-1:exon:14617;Parent=Msa0465240-mRNA-1
chr3_3	five_prime_UTR	65590796	65590842	65590796	ID=Msa0465240-mRNA-1:five_prime_utr;Parent=Msa0465240-mRNA-1
chr3_3	CDS	65590843	65590975	65590843	ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3	CDS	65591088	65591217	65591088	ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3	CDS	65591328	65592084	65591328	ID=Msa0465240-mRNA-1:cds;Parent=Msa0465240-mRNA-1
chr3_3	three_prime_UTR	65592085	65592213	65592085	ID=Msa0465240-mRNA-1:three_prime_utr;Parent=Msa0465240-mRNA-1

Gene Sequence

>Msa0465240

ATGGGTCGCCATTTCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATCAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATTATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACTCATAAACACTTCATCAATAATATTGATTCTCTTATAAAGGAAGAGAAGGAAAAACCATCGATGATAATGCCACTGTCTCACTCTCAACCTCAAAGAATTCTAGCTACACACTCAATGCTAGAATCCTCACAAGAATACTCAGAAGCACTTCTAATGAGTGATTTGATTAATCACTATAATATTAGTGGATTAGCTTTAACAGAAGCTTCAAGAAAAATTCTTATGAATAAGCCAACATTGGATTTTGATCCATTGTACTACAATTTAAGCATGAACAATTATTATCAGCCAAGTCTATTACAATTTGAACAGAACCAGTTTGGAACCAATTCAAGCACTTTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGAATTTTCAGACAATATCAACAACTCAGTTTCCAAATTTAATTCTCCTTTGGTGAATGAAAGTAATTATTATCAAATGAGCAACATGATTAATGAAAATGCAGGTGGATTAATCTCATGGGAAGGTGAAGAATTCATCAACAAGACAAGTTCATGGCAAGGACAGATGCTGAGTCATAATAATTCAATAGATTTCAGTACATATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTTCACCATTTATGA

Protein sequence

>Msa0465240

MGRHFCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKHFINNIDSLIKEEKEKPSMIMPLSHSQPQRILATHSMLESSQEYSEALLMSDLINHYNISGLALTEASRKILMNKPTLDFDPLYYNLSMNNYYQPSLLQFEQNQFGTNSSTFFSSMPCLNSSEFSDNINNSVSKFNSPLVNESNYYQMSNMINENAGGLISWEGEEFINKTSSWQGQMLSHNNSIDFSTYPLTSLSEDLSNIEANFDVFHHL*