AlfalfaGEDB | Msa0465590

M. sativa cultivar zhongmu-4 / Msa0465590

KEGG: K04730
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465590	XP_013461023.1	95.801	643	27	0	1	643	1	643	0.0	1226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465590	sp\|O48788\|Y2267_ARATH	35.397	630	372	16	7	624	6	612	3.97e-101	325

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465590	A0A072UZR6	95.801	643	27	0	1	643	1	643	0.0	1226

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465590	MtrunA17_Chr3g0117921	95.801	643	27	0	1	643	1	643	0.0	1226
Msa0465590	MtrunA17_Chr2g0288391	46.958	641	297	11	11	641	8	615	0.0	545
Msa0465590	MtrunA17_Chr8g0376301	43.231	458	181	8	187	642	10	390	9.28e-109	333
Msa0465590	MtrunA17_Chr1g0209521	32.278	663	358	18	18	632	19	638	4.07e-93	301
Msa0465590	MtrunA17_Chr3g0128551	33.132	661	375	20	1	637	3	620	1.19e-90	294
Msa0465590	MtrunA17_Chr5g0432851	32.666	649	384	18	3	635	20	631	1.77e-85	281
Msa0465590	MtrunA17_Chr6g0478621	32.166	628	380	16	51	643	44	660	9.60e-85	279
Msa0465590	MtrunA17_Chr8g0387791	30.469	640	390	13	8	635	3	599	1.72e-83	275
Msa0465590	MtrunA17_Chr7g0245171	32.353	646	381	16	3	632	2	607	3.37e-83	273
Msa0465590	MtrunA17_Chr5g0434551	33.990	609	347	20	51	637	46	621	8.45e-83	273

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465590	AT2G26730.1	35.397	630	372	16	7	624	6	612	4.04e-102	325
Msa0465590	AT1G68400.1	34.036	617	342	17	51	632	51	637	1.20e-91	298
Msa0465590	AT2G36570.1	33.942	657	357	21	26	634	21	648	1.46e-91	298
Msa0465590	AT1G64210.1	31.098	656	354	18	8	637	4	587	2.93e-86	281
Msa0465590	AT5G24100.1	31.522	644	383	19	1	625	1	605	1.32e-85	280
Msa0465590	AT1G48480.1	33.278	604	351	21	51	624	54	635	7.65e-84	277
Msa0465590	AT3G08680.1	30.997	642	368	22	16	624	8	607	1.64e-82	273
Msa0465590	AT3G08680.2	30.997	642	368	22	16	624	8	607	1.64e-82	273
Msa0465590	AT5G58300.3	30.698	645	397	19	11	639	27	637	2.47e-81	270
Msa0465590	AT5G58300.1	30.698	645	397	19	11	639	27	637	2.47e-81	270

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Find 117 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGTCCGAAACATGA+AGG	0.599826	3_3:+66014378	None:intergenic
AAAGCATGGAAGCCTATACA+AGG	0.620276	3_3:-66013688	Msa0465590:CDS
AAAGTGGACACACTCTTGAT+TGG	0.412553	3_3:-66013098	Msa0465590:CDS
AAATCTCGATCACCTGTCAA+AGG	0.571660	3_3:+66012552	None:intergenic
AAATGAGTCTAAAACAAATC+TGG	0.417323	3_3:-66014826	Msa0465590:CDS
AACATGAAGAGGCTACCATT+CGG	0.565010	3_3:+66013489	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3_3:-66012949	Msa0465590:CDS
AAGAACTGGTTTAATGGCCT+TGG	0.374584	3_3:-66013849	Msa0465590:CDS
AAGTTGGAGAAATCAAAATC+AGG	0.498633	3_3:+66014272	None:intergenic
AATACTCTGATCTAACTCCA+AGG	0.650332	3_3:+66013832	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATGCATGAATTTGACAA+GGG	+	chr3_3:66012658-66012677	None:intergenic	30.0%
CTCAACAACAATTACTTACA+CGG	-	chr3_3:66012870-66012889	Msa0465590:CDS	30.0%
AAGTTGGAGAAATCAAAATC+AGG	+	chr3_3:66013116-66013135	None:intergenic	30.0%
TCCTAATTTATGTGGAAAAC+CGG	-	chr3_3:66013223-66013242	Msa0465590:intron	30.0%
ATTGGCAAATCATCAAGAAA+TGG	+	chr3_3:66013320-66013339	None:intergenic	30.0%
ACTATGTAGCCTGAATAAAT+TGG	+	chr3_3:66013338-66013357	None:intergenic	30.0%
TATTCAGGCTACATAGTTAT+TGG	-	chr3_3:66013341-66013360	Msa0465590:intron	30.0%
CTTAGATCATGTTGAAAAGA+AGG	-	chr3_3:66013433-66013452	Msa0465590:intron	30.0%
ATTCAAATGGATCAAAGAAC+TGG	-	chr3_3:66013522-66013541	Msa0465590:CDS	30.0%
TGTTAAGAGGATCAAAGATT+GGG	-	chr3_3:66013748-66013767	Msa0465590:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	66012561	66014846	66012561	ID=Msa0465590;Name=Msa0465590
chr3_3	mRNA	66012561	66014846	66012561	ID=Msa0465590-mRNA-1;Parent=Msa0465590;Name=Msa0465590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|643
chr3_3	exon	66013481	66014846	66013481	ID=Msa0465590-mRNA-1:exon:14878;Parent=Msa0465590-mRNA-1
chr3_3	exon	66012561	66013126	66012561	ID=Msa0465590-mRNA-1:exon:14877;Parent=Msa0465590-mRNA-1
chr3_3	CDS	66013481	66014846	66013481	ID=Msa0465590-mRNA-1:cds;Parent=Msa0465590-mRNA-1
chr3_3	CDS	66012561	66013126	66012561	ID=Msa0465590-mRNA-1:cds;Parent=Msa0465590-mRNA-1

Gene Sequence

>Msa0465590

ATGAGTCTAAAACAAATCTGGTTCTGGACAATACTCACTTTTCTGTTTCTGTTTTTTCTAAAGACTAATTCAGAATCAGAAAATGTCAGAAAAGCCCTTGTCAAATTCATGCATCAACTTGAACCACCAGATCAGAATTCCATGTGGGGTTGGAACCTCACATCAGATCCTTGCACTCATAACTGGCACGGTGTAACTTGTTATGCAAACAACCAATACATTAAGAGTATAGATCTTGAAAAACTTAATTTCACCGGCGTTCTAGACACAACTTCTCTTTGCATTGCTAACACTCTTCAATACCTCAGCCTCAACAACAATTACTTACACGGTTTTATATCGGAGGATATAGAAAACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACGTAACATGAAGCGCCTTCATGTTTCGGACAATCTTTTCACGGGAAACCTTCCAAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAATGTCTCTAACAACAATTTACGCGGTCCTATTCCTGATGTTGGAGGTAGATTTAGTGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCGGTTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCGTTATAAAAGGCAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCATGCTGTTAAAAAAATGCATGACCAAAAATAAAGAAACAGGCTTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGTGGTGGTGGTGTTGTTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAACTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGAAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAAGATTTGTTAAGTGCTCCTGCTGAATTGATTCGGAGAGGAAAGCATGGAAGCCTATACAAGGTTATGTTAGATAATGGTGTGCTTTTGGCTGTTAAGAGGATCAAAGATTGGGGAATTTCAAAGCATGAATTTGAAAGAAGGATGAATTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCGAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGACACACTCTTGATTGGAGGAGCAGACTAGATGTTGCTGCTAAGATAGCTGAAGCTTTGGCCTATATGCATGAGGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGTAACATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGATAGCGGAAAATCAAGGCGTCATTTCTCATATCAGAAGCCGCAGAAACAAAAATATGTCTGCAGCAGCCACCTTCAGAGCTGATATATATGCCTTCGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAGAGAATGGTGAACTTGTTGCAGGTGGCATTAAAATGCATTAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCACTCATCACAAATGCGTTGAAAGACGAAGATGAAAAATCTGTATCCTTTGACAGGTGA

Protein sequence

>Msa0465590

MSLKQIWFWTILTFLFLFFLKTNSESENVRKALVKFMHQLEPPDQNSMWGWNLTSDPCTHNWHGVTCYANNQYIKSIDLEKLNFTGVLDTTSLCIANTLQYLSLNNNYLHGFISEDIENCKFLTHLLLSGNKFSGNLPASIPQLRNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGRFSADSFYGNPNLCGKPVSNSSCPPPPPPPPPIVIKGKKKNPFLDDLPIYSGYIVIGLIFIIFLIFMLLKKCMTKNKETGLDHVEKKDMSQDTSGGGVVVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESEVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHTLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMIAENQGVISHIRSRRNKNMSAAATFRADIYAFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR*