Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467620 | AES71974.2 | 73.333 | 195 | 14 | 2 | 1 | 184 | 1 | 168 | 7.39e-56 | 192 |
| Msa0467620 | AES71974.2 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 5.00e-74 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467620 | G7JBB9 | 73.333 | 195 | 14 | 2 | 1 | 184 | 1 | 168 | 3.53e-56 | 192 |
| Msa0467620 | G7JBB9 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 2.39e-74 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0467620 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467620 | MtrunA17_Chr3g0122071 | 90.598 | 117 | 11 | 0 | 213 | 329 | 106 | 222 | 5.70e-73 | 225 |
| Msa0467620 | MtrunA17_Chr3g0122071 | 69.744 | 195 | 14 | 2 | 1 | 184 | 1 | 161 | 8.46e-54 | 176 |
| Msa0467620 | MtrunA17_Chr4g0064011 | 54.494 | 178 | 57 | 9 | 1 | 174 | 1 | 158 | 2.52e-42 | 146 |
| Msa0467620 | MtrunA17_Chr4g0064011 | 61.069 | 131 | 48 | 3 | 203 | 332 | 104 | 232 | 6.88e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467620 | AT5G22990.1 | 51.807 | 83 | 40 | 0 | 220 | 302 | 232 | 314 | 1.02e-19 | 88.6 |
| Msa0467620 | AT5G22990.1 | 51.282 | 78 | 24 | 2 | 136 | 213 | 232 | 295 | 3.98e-16 | 78.6 |
| Msa0467620 | AT2G18490.1 | 53.425 | 73 | 33 | 1 | 207 | 279 | 142 | 213 | 6.15e-17 | 79.7 |
| Msa0467620 | AT2G18490.1 | 60.000 | 60 | 23 | 1 | 123 | 182 | 142 | 200 | 5.48e-15 | 73.9 |
| Msa0467620 | AT2G18490.2 | 53.425 | 73 | 33 | 1 | 207 | 279 | 192 | 263 | 7.52e-17 | 80.1 |
| Msa0467620 | AT2G18490.2 | 58.065 | 62 | 25 | 1 | 123 | 184 | 192 | 252 | 7.62e-15 | 74.3 |
| Msa0467620 | AT2G15740.1 | 52.564 | 78 | 32 | 2 | 209 | 286 | 219 | 291 | 1.14e-16 | 80.1 |
| Msa0467620 | AT2G15740.1 | 60.000 | 60 | 23 | 1 | 125 | 184 | 219 | 277 | 9.03e-16 | 77.4 |
| Msa0467620 | AT5G42640.1 | 52.113 | 71 | 29 | 2 | 213 | 279 | 218 | 287 | 3.16e-15 | 75.5 |
| Msa0467620 | AT5G42640.1 | 39.216 | 102 | 57 | 2 | 85 | 182 | 174 | 274 | 5.40e-13 | 68.9 |
Find 38 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTAATATTTATATTAA+TGG | 0.098823 | 3_3:-69058447 | None:intergenic |
| TCAATTGGTACCAATAATTT+TGG | 0.136685 | 3_3:+69058335 | Msa0467620:CDS |
| AGCATGACTTCCAAAATTAT+TGG | 0.299809 | 3_3:-69058345 | None:intergenic |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_3:+69058695 | Msa0467620:CDS |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_3:+69059047 | Msa0467620:CDS |
| GAGATTCTTGAAGGTCAGTT+TGG | 0.349001 | 3_3:+69058389 | Msa0467620:CDS |
| ATCGTTCTTGTTCCGATGCA+TGG | 0.373109 | 3_3:-69058973 | None:intergenic |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_3:-69058691 | None:intergenic |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_3:-69059043 | None:intergenic |
| ACAATAATAGATTGTTTCAA+TGG | 0.400008 | 3_3:+69058279 | Msa0467620:CDS |
| TATTAATATTAATTATTTGA+AGG | 0.413280 | 3_3:-69059359 | None:intergenic |
| AGATTCTTGAAGGTCAGTTT+GGG | 0.424623 | 3_3:+69058390 | Msa0467620:CDS |
| TCGTTCTTGTTCCGATGCAT+GGG | 0.447785 | 3_3:-69058972 | None:intergenic |
| TTATCAGTACAAGCAATAAC+AGG | 0.454560 | 3_3:-69059254 | None:intergenic |
| ACTCATTCATCATCATCAAT+TGG | 0.471297 | 3_3:+69058320 | Msa0467620:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_3:+69058662 | Msa0467620:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_3:+69059014 | Msa0467620:CDS |
| ACATCTCCAACATCAGCAAC+AGG | 0.474279 | 3_3:-69058608 | None:intergenic |
| AATATTCCTGTTGCTGATGT+TGG | 0.486932 | 3_3:+69058602 | Msa0467620:CDS |
| TCTCATCTTGATCTCCGTGT+AGG | 0.496262 | 3_3:+69058539 | Msa0467620:CDS |
| AAAGCGATGGAGATTCTTGA+AGG | 0.521307 | 3_3:+69058380 | Msa0467620:CDS |
| CTCTTACCCCTCTTCCAAGT+GGG | 0.526442 | 3_3:+69059318 | Msa0467620:CDS |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_3:-69058690 | None:intergenic |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_3:-69059042 | None:intergenic |
| AGATTGTTTCAATGGATGCA+TGG | 0.544477 | 3_3:+69058287 | Msa0467620:CDS |
| ATGTTAACAAGAACGATATG+AGG | 0.552379 | 3_3:+69058627 | Msa0467620:CDS |
| GGAATATTAATCATTTGAGA+AGG | 0.562733 | 3_3:-69058587 | None:intergenic |
| ATCGGAACAAGAACGATATG+AGG | 0.569024 | 3_3:+69058979 | Msa0467620:CDS |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_3:-69058701 | None:intergenic |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_3:-69059053 | None:intergenic |
| GCTCTTACCCCTCTTCCAAG+TGG | 0.581741 | 3_3:+69059317 | Msa0467620:CDS |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_3:-69058697 | None:intergenic |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_3:-69059049 | None:intergenic |
| CAGATTCAAAAGCTCAATGA+CGG | 0.593887 | 3_3:+69059215 | Msa0467620:CDS |
| ATTGCTCTTACCCCATGCAT+CGG | 0.621144 | 3_3:+69058961 | Msa0467620:CDS |
| TCCGGGAATCCTAAAAGCGA+TGG | 0.625731 | 3_3:+69058367 | Msa0467620:CDS |
| CGTTCTTGTTCCGATGCATG+GGG | 0.640029 | 3_3:-69058971 | None:intergenic |
| ATTGTGATGATAAGCCTACA+CGG | 0.769789 | 3_3:-69058553 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATAGATTGTTTCAA+TGG | + | chr3_3:69058279-69058298 | Msa0467620:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | - | chr3_3:69059079-69059098 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | - | chr3_3:69059080-69059099 | None:intergenic | 20.0% |
| !! | ACAATAATAGATTGTTTCAA+TGG | + | chr3_3:69058279-69058298 | Msa0467620:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | - | chr3_3:69059079-69059098 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | - | chr3_3:69059080-69059099 | None:intergenic | 20.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | + | chr3_3:69058335-69058354 | Msa0467620:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | - | chr3_3:69058590-69058609 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_3:69058662-69058681 | Msa0467620:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | - | chr3_3:69058727-69058746 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | - | chr3_3:69058728-69058747 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | + | chr3_3:69058818-69058837 | Msa0467620:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_3:69058662-69058681 | Msa0467620:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | + | chr3_3:69059171-69059190 | Msa0467620:CDS | 25.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | + | chr3_3:69058335-69058354 | Msa0467620:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | - | chr3_3:69058590-69058609 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_3:69058662-69058681 | Msa0467620:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | - | chr3_3:69058727-69058746 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | - | chr3_3:69058728-69058747 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | + | chr3_3:69058818-69058837 | Msa0467620:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_3:69058662-69058681 | Msa0467620:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | + | chr3_3:69059171-69059190 | Msa0467620:CDS | 25.0% |
| ACTCATTCATCATCATCAAT+TGG | + | chr3_3:69058320-69058339 | Msa0467620:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | - | chr3_3:69058348-69058367 | None:intergenic | 30.0% | |
| ATGTTAACAAGAACGATATG+AGG | + | chr3_3:69058627-69058646 | Msa0467620:CDS | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_3:69058904-69058923 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | - | chr3_3:69059074-69059093 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_3:69058904-69058923 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | + | chr3_3:69059334-69059353 | Msa0467620:CDS | 30.0% | |
| ACTCATTCATCATCATCAAT+TGG | + | chr3_3:69058320-69058339 | Msa0467620:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | - | chr3_3:69058348-69058367 | None:intergenic | 30.0% | |
| ATGTTAACAAGAACGATATG+AGG | + | chr3_3:69058627-69058646 | Msa0467620:CDS | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_3:69058904-69058923 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | - | chr3_3:69059074-69059093 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_3:69058904-69058923 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | + | chr3_3:69059334-69059353 | Msa0467620:CDS | 30.0% | |
| AGATTGTTTCAATGGATGCA+TGG | + | chr3_3:69058287-69058306 | Msa0467620:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | + | chr3_3:69058349-69058368 | Msa0467620:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | + | chr3_3:69058390-69058409 | Msa0467620:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | - | chr3_3:69058556-69058575 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | + | chr3_3:69058602-69058621 | Msa0467620:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | - | chr3_3:69058722-69058741 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_3:69058862-69058881 | Msa0467620:intron | 35.0% | |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_3:69058862-69058881 | Msa0467620:intron | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | - | chr3_3:69059328-69059347 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | - | chr3_3:69059329-69059348 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | - | chr3_3:69059335-69059354 | None:intergenic | 35.0% |
| AGATTGTTTCAATGGATGCA+TGG | + | chr3_3:69058287-69058306 | Msa0467620:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | + | chr3_3:69058349-69058368 | Msa0467620:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | + | chr3_3:69058390-69058409 | Msa0467620:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | - | chr3_3:69058556-69058575 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | + | chr3_3:69058602-69058621 | Msa0467620:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | - | chr3_3:69058722-69058741 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_3:69058862-69058881 | Msa0467620:intron | 35.0% | |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_3:69058862-69058881 | Msa0467620:intron | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | - | chr3_3:69059328-69059347 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | - | chr3_3:69059329-69059348 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | - | chr3_3:69059335-69059354 | None:intergenic | 35.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | + | chr3_3:69058350-69058369 | Msa0467620:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | - | chr3_3:69058379-69058398 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | + | chr3_3:69058380-69058399 | Msa0467620:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | + | chr3_3:69058389-69058408 | Msa0467620:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_3:69058693-69058712 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_3:69058694-69058713 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_3:69058695-69058714 | Msa0467620:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_3:69058700-69058719 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_3:69058704-69058723 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_3:69058856-69058875 | None:intergenic | 40.0% |
| ATCGGAACAAGAACGATATG+AGG | + | chr3_3:69058979-69058998 | Msa0467620:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_3:69058693-69058712 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_3:69058694-69058713 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_3:69058695-69058714 | Msa0467620:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_3:69058700-69058719 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_3:69058704-69058723 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_3:69058856-69058875 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | - | chr3_3:69059327-69059346 | None:intergenic | 40.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | + | chr3_3:69058350-69058369 | Msa0467620:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | - | chr3_3:69058379-69058398 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | + | chr3_3:69058380-69058399 | Msa0467620:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | + | chr3_3:69058389-69058408 | Msa0467620:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_3:69058693-69058712 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_3:69058694-69058713 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_3:69058695-69058714 | Msa0467620:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_3:69058700-69058719 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_3:69058704-69058723 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_3:69058856-69058875 | None:intergenic | 40.0% |
| ATCGGAACAAGAACGATATG+AGG | + | chr3_3:69058979-69058998 | Msa0467620:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_3:69058693-69058712 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_3:69058694-69058713 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_3:69058695-69058714 | Msa0467620:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_3:69058700-69058719 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_3:69058704-69058723 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_3:69058856-69058875 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | - | chr3_3:69059327-69059346 | None:intergenic | 40.0% |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | - | chr3_3:69058371-69058390 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | + | chr3_3:69058539-69058558 | Msa0467620:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | - | chr3_3:69058611-69058630 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCAT+CGG | + | chr3_3:69058961-69058980 | Msa0467620:CDS | 45.0% | |
| TCGTTCTTGTTCCGATGCAT+GGG | - | chr3_3:69058975-69058994 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGATGCA+TGG | - | chr3_3:69058976-69058995 | None:intergenic | 45.0% | |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | - | chr3_3:69058371-69058390 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | + | chr3_3:69058539-69058558 | Msa0467620:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | - | chr3_3:69058611-69058630 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCAT+CGG | + | chr3_3:69058961-69058980 | Msa0467620:CDS | 45.0% | |
| TCGTTCTTGTTCCGATGCAT+GGG | - | chr3_3:69058975-69058994 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGATGCA+TGG | - | chr3_3:69058976-69058995 | None:intergenic | 45.0% | |
| !! | ATCATTAATATTTATATTAA+TGG | - | chr3_3:69058450-69058469 | None:intergenic | 5.0% |
| !! | ATCATTAATATTTATATTAA+TGG | - | chr3_3:69058450-69058469 | None:intergenic | 5.0% |
| TCCGGGAATCCTAAAAGCGA+TGG | + | chr3_3:69058367-69058386 | Msa0467620:CDS | 50.0% | |
| CGTTCTTGTTCCGATGCATG+GGG | - | chr3_3:69058974-69058993 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | + | chr3_3:69059318-69059337 | Msa0467620:CDS | 50.0% | |
| TCCGGGAATCCTAAAAGCGA+TGG | + | chr3_3:69058367-69058386 | Msa0467620:CDS | 50.0% | |
| CGTTCTTGTTCCGATGCATG+GGG | - | chr3_3:69058974-69058993 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | + | chr3_3:69059318-69059337 | Msa0467620:CDS | 50.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | + | chr3_3:69059317-69059336 | Msa0467620:CDS | 55.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | + | chr3_3:69059317-69059336 | Msa0467620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 69058275 | 69059373 | 69058275 | ID=Msa0467620;Name=Msa0467620 |
| chr3_3 | mRNA | 69058275 | 69059373 | 69058275 | ID=Msa0467620-mRNA-1;Parent=Msa0467620;Name=Msa0467620-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|332 |
| chr3_3 | exon | 69058275 | 69058856 | 69058275 | ID=Msa0467620-mRNA-1:exon:16174;Parent=Msa0467620-mRNA-1 |
| chr3_3 | exon | 69058957 | 69059373 | 69058957 | ID=Msa0467620-mRNA-1:exon:16175;Parent=Msa0467620-mRNA-1 |
| chr3_3 | CDS | 69058275 | 69058856 | 69058275 | ID=Msa0467620-mRNA-1:cds;Parent=Msa0467620-mRNA-1 |
| chr3_3 | CDS | 69058957 | 69059373 | 69058957 | ID=Msa0467620-mRNA-1:cds;Parent=Msa0467620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
