AlfalfaGEDB | Msa0467820

M. sativa cultivar zhongmu-4 / Msa0467820

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900618 GO:1901363 GO:1903506 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467820	MCI33390.1	83.051	59	10	0	1	59	27	85	1.12e-26	102

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467820	sp\|Q4VYC8\|NSP1_MEDTR	82.540	63	7	2	1	60	492	553	1.31e-25	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467820	A0A392RC75	83.051	59	10	0	1	59	27	85	5.33e-27	102

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TFs/TRs:

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Gene ID	Type	Classification
Msa0467820	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467820	MtrunA17_Chr8g0344101	82.540	63	7	2	1	60	544	605	1.35e-26	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467820	AT3G13840.1	55.357	56	24	1	1	56	454	508	9.00e-14	63.9

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Find 17 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGTACAAGTATGGGACTA+TGG	0.445901	3_3:-69250632	Msa0467820:CDS
ACCTGTTTCTTTGTTGAAAC+TGG	0.256543	3_3:-69250598	Msa0467820:CDS
AGAAGATAACAGTACAAGTA+TGG	0.296127	3_3:-69250640	Msa0467820:CDS
ATGAAAGAAGCAGGGTTTGC+AGG	0.378552	3_3:-69250744	Msa0467820:CDS
ATGGACGTCGAGCTTTGTTG+AGG	0.632927	3_3:-69250695	Msa0467820:CDS
GAAAGAAGCAGGGTTTGCAG+GGG	0.689170	3_3:-69250742	Msa0467820:CDS
GAAGATAACAGTACAAGTAT+GGG	0.566917	3_3:-69250639	Msa0467820:CDS
GAGGATGTATGATAATAATT+GGG	0.513135	3_3:-69250676	Msa0467820:CDS
GGGTTTGCAGGGGAAGTCTT+TGG	0.331788	3_3:-69250732	Msa0467820:CDS
GTACAAGTATGGGACTATGG+TGG	0.679622	3_3:-69250629	Msa0467820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATAATTGGGAGATGAAAG+TGG	-	chr3_3:69250664-69250683	Msa0467820:CDS	30.0%
AGAAGATAACAGTACAAGTA+TGG	-	chr3_3:69250688-69250707	Msa0467820:CDS	30.0%
GAAGATAACAGTACAAGTAT+GGG	-	chr3_3:69250689-69250708	Msa0467820:CDS	30.0%
TTTGGAGAAGATGCAATTGA+TGG	-	chr3_3:69250614-69250633	Msa0467820:CDS	35.0%
TCCAGTTTCAACAAAGAAAC+AGG	+	chr3_3:69250734-69250753	None:intergenic	35.0%
ACAGTACAAGTATGGGACTA+TGG	-	chr3_3:69250696-69250715	Msa0467820:CDS	40.0%
ATGAAAGAAGCAGGGTTTGC+AGG	-	chr3_3:69250584-69250603	Msa0467820:CDS	45.0%
TGAAAGAAGCAGGGTTTGCA+GGG	-	chr3_3:69250585-69250604	Msa0467820:CDS	45.0%
GTACAAGTATGGGACTATGG+TGG	-	chr3_3:69250699-69250718	Msa0467820:CDS	45.0%
GAAAGAAGCAGGGTTTGCAG+GGG	-	chr3_3:69250586-69250605	Msa0467820:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	69250584	69250766	69250584	ID=Msa0467820;Name=Msa0467820
chr3_3	mRNA	69250584	69250766	69250584	ID=Msa0467820-mRNA-1;Parent=Msa0467820;Name=Msa0467820-mRNA-1;_AED=0.19;_eAED=0.59;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|60
chr3_3	exon	69250584	69250766	69250584	ID=Msa0467820-mRNA-1:exon:16385;Parent=Msa0467820-mRNA-1
chr3_3	CDS	69250584	69250766	69250584	ID=Msa0467820-mRNA-1:cds;Parent=Msa0467820-mRNA-1

Gene Sequence	>Msa0467820 ATGAAAGAAGCAGGGTTTGCAGGGGAAGTCTTTGGAGAAGATGCAATTGATGGACGTCGAGCTTTGTTGAGGATGTATGATAATAATTGGGAGATGAAAGTGGAAGAAGATAACAGTACAAGTATGGGACTATGGTGGAAGAGTCAACCTGTTTCTTTGTTGAAACTGGATAAACTACCATAA
Protein sequence	>Msa0467820 MKEAGFAGEVFGEDAIDGRRALLRMYDNNWEMKVEEDNSTSMGLWWKSQPVSLLKLDKLP*