Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470450 | XP_024626623.1 | 93.939 | 132 | 8 | 0 | 1 | 132 | 1 | 132 | 5.39e-78 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470450 | A2Q1A1 | 35.625 | 160 | 91 | 5 | 18 | 168 | 299 | 455 | 1.80e-11 | 74.7 |
| Msa0470450 | A2Q1A1 | 88.235 | 85 | 10 | 0 | 161 | 245 | 716 | 800 | 2.03e-40 | 158 |
| Msa0470450 | A2Q1A1 | 93.182 | 132 | 9 | 0 | 1 | 132 | 56 | 187 | 1.73e-74 | 251 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0470450 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCCTCCAATTCATCTA+AGG | 0.298986 | 3_3:-72517890 | None:intergenic |
| GGAAGAATTTGAATTGGAAT+TGG | 0.324641 | 3_3:+72517763 | Msa0470450:CDS |
| CGAGGCTTTGTAAAGCTTGC+AGG | 0.329468 | 3_3:+72518034 | Msa0470450:CDS |
| ATCAAGACCCTTAGATGAAT+TGG | 0.339218 | 3_3:+72517882 | Msa0470450:CDS |
| CCACAACCTTTGGTATTTGA+AGG | 0.394670 | 3_3:-72517958 | None:intergenic |
| GTCCTCGGAAGAATTTGAAT+TGG | 0.403736 | 3_3:+72517757 | Msa0470450:CDS |
| CCTTTGGTATTTGAAGGTTC+AGG | 0.415587 | 3_3:-72517952 | None:intergenic |
| TGGGACAATTGCGACTATCA+TGG | 0.441276 | 3_3:-72518068 | None:intergenic |
| AAAGCTTATGCTTATGTCGC+TGG | 0.447210 | 3_3:+72516750 | Msa0470450:CDS |
| ATCGTTTCAAGTCATGTGTC+TGG | 0.450742 | 3_3:+72517726 | Msa0470450:CDS |
| GTTGTGGAAAACGGATCAAA+GGG | 0.455006 | 3_3:+72517974 | Msa0470450:CDS |
| AAGATAAAGATGGTGTCAAA+TGG | 0.458986 | 3_3:+72516802 | Msa0470450:CDS |
| GTATTTGATACTTTAGAAGA+AGG | 0.476029 | 3_3:+72516714 | Msa0470450:CDS |
| AATTTGAATTGGAATTGGAA+TGG | 0.478043 | 3_3:+72517768 | Msa0470450:CDS |
| ATACCAAAGGTTGTGGAAAA+CGG | 0.480244 | 3_3:+72517965 | Msa0470450:CDS |
| ATCAAATACCTTGCCAATCA+CGG | 0.480690 | 3_3:-72516700 | None:intergenic |
| GATGACCTCAAACCCGTGAT+TGG | 0.481001 | 3_3:+72516687 | Msa0470450:CDS |
| CCTTCAAATACCAAAGGTTG+TGG | 0.497729 | 3_3:+72517958 | Msa0470450:CDS |
| CCTTGCCAATCACGGGTTTG+AGG | 0.498767 | 3_3:-72516692 | None:intergenic |
| TCAAATACCTTGCCAATCAC+GGG | 0.509728 | 3_3:-72516699 | None:intergenic |
| AGAAAAGGTGGGTAGTTCCA+TGG | 0.513534 | 3_3:+72517682 | Msa0470450:intron |
| AAGACCCTTAGATGAATTGG+AGG | 0.518183 | 3_3:+72517885 | Msa0470450:CDS |
| AGTTCCATGGATGAGAATAG+TGG | 0.521457 | 3_3:+72517695 | Msa0470450:CDS |
| GGTTGTGGAAAACGGATCAA+AGG | 0.535753 | 3_3:+72517973 | Msa0470450:CDS |
| AAAACCACTATTCTCATCCA+TGG | 0.539900 | 3_3:-72517699 | None:intergenic |
| TTTGATACTTTAGAAGAAGG+AGG | 0.543151 | 3_3:+72516717 | Msa0470450:CDS |
| AAAAGAAAATTGACACGGGA+GGG | 0.544160 | 3_3:+72516921 | Msa0470450:CDS |
| TCTTACCAAAAGCTATGAAG+AGG | 0.552062 | 3_3:-72518097 | None:intergenic |
| TTACCGTCTTTCGACGGTGA+GGG | 0.553668 | 3_3:-72516621 | None:intergenic |
| AAAGCCTCCAATTCATCTAA+GGG | 0.562759 | 3_3:-72517889 | None:intergenic |
| GGATCATTACCGTCTTTCGA+CGG | 0.572187 | 3_3:-72516627 | None:intergenic |
| TTCCAATTCAAATTCTTCCG+AGG | 0.573755 | 3_3:-72517759 | None:intergenic |
| TGTCTGGAACTCAGAGTCCT+CGG | 0.577198 | 3_3:+72517742 | Msa0470450:CDS |
| ACTATAACGAAAGATAAAGA+TGG | 0.581643 | 3_3:+72516792 | Msa0470450:CDS |
| TTACCCTCACCGTCGAAAGA+CGG | 0.582992 | 3_3:+72516618 | Msa0470450:CDS |
| GGGACAATTGCGACTATCAT+GGG | 0.600073 | 3_3:-72518067 | None:intergenic |
| TTGGTATTTGAAGGTTCAGG+TGG | 0.606194 | 3_3:-72517949 | None:intergenic |
| TGTGGAAAACGGATCAAAGG+GGG | 0.617623 | 3_3:+72517976 | Msa0470450:CDS |
| CCTCAAACCCGTGATTGGCA+AGG | 0.622334 | 3_3:+72516692 | Msa0470450:CDS |
| GGAATGGATTCCTGCGTGTG+AGG | 0.643507 | 3_3:+72516665 | Msa0470450:CDS |
| ATTACCGTCTTTCGACGGTG+AGG | 0.651913 | 3_3:-72516622 | None:intergenic |
| CCTGAACCTTCAAATACCAA+AGG | 0.662219 | 3_3:+72517952 | Msa0470450:CDS |
| GTGGAAAACGGATCAAAGGG+GGG | 0.667040 | 3_3:+72517977 | Msa0470450:CDS |
| TTGAGGTCATCCTCACACGC+AGG | 0.677670 | 3_3:-72516675 | None:intergenic |
| TTGTGGAAAACGGATCAAAG+GGG | 0.697530 | 3_3:+72517975 | Msa0470450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTTATCAAATAATGA+AGG | + | chr3_3:72517130-72517149 | Msa0470450:intron | 15.0% |
| !!! | TTGATAATTTTAGAAGAAAA+CGG | + | chr3_3:72517258-72517277 | Msa0470450:intron | 15.0% |
| !! | AAAAAGTTATCAAATAATGA+AGG | + | chr3_3:72517130-72517149 | Msa0470450:intron | 15.0% |
| !!! | TTGATAATTTTAGAAGAAAA+CGG | + | chr3_3:72517258-72517277 | Msa0470450:intron | 15.0% |
| !!! | TGATAATTTTAGAAGAAAAC+GGG | + | chr3_3:72517259-72517278 | Msa0470450:intron | 20.0% |
| !! | TCTAAAAAAACTTTCAGAAA+AGG | + | chr3_3:72517667-72517686 | Msa0470450:intron | 20.0% |
| !!! | TGATAATTTTAGAAGAAAAC+GGG | + | chr3_3:72517259-72517278 | Msa0470450:intron | 20.0% |
| !! | TCTAAAAAAACTTTCAGAAA+AGG | + | chr3_3:72517667-72517686 | Msa0470450:intron | 20.0% |
| !! | GTATTTGATACTTTAGAAGA+AGG | + | chr3_3:72516714-72516733 | Msa0470450:CDS | 25.0% |
| ! | ACTATAACGAAAGATAAAGA+TGG | + | chr3_3:72516792-72516811 | Msa0470450:CDS | 25.0% |
| !! | ATATTTTCTTTGCTCAAAAG+AGG | + | chr3_3:72516827-72516846 | Msa0470450:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+GGG | + | chr3_3:72516828-72516847 | Msa0470450:CDS | 25.0% |
| ! | GTAGAAAAAGAAAATTGACA+CGG | + | chr3_3:72516916-72516935 | Msa0470450:CDS | 25.0% |
| ! | TAGAAAAAGAAAATTGACAC+GGG | + | chr3_3:72516917-72516936 | Msa0470450:CDS | 25.0% |
| ! | ACATAATCATAGAAGAATGA+AGG | - | chr3_3:72517293-72517312 | None:intergenic | 25.0% |
| !! | ATTATGTAGCTGATAATGAA+GGG | + | chr3_3:72517306-72517325 | Msa0470450:intron | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | + | chr3_3:72517365-72517384 | Msa0470450:intron | 25.0% |
| ! | TCATAAAATACTTGTTTGTG+CGG | - | chr3_3:72517418-72517437 | None:intergenic | 25.0% |
| ! | TGATCTGTTATTATCATAAC+AGG | - | chr3_3:72517575-72517594 | None:intergenic | 25.0% |
| ! | ATGATAATAACAGATCAAGA+TGG | + | chr3_3:72517578-72517597 | Msa0470450:intron | 25.0% |
| ! | TGATAATAACAGATCAAGAT+GGG | + | chr3_3:72517579-72517598 | Msa0470450:intron | 25.0% |
| ! | AAAAAAACTTTCAGAAAAGG+TGG | + | chr3_3:72517670-72517689 | Msa0470450:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | + | chr3_3:72517671-72517690 | Msa0470450:intron | 25.0% |
| ! | AATTTGAATTGGAATTGGAA+TGG | + | chr3_3:72517768-72517787 | Msa0470450:CDS | 25.0% |
| !!! | TTCAATTGTTTTAGCTACAT+TGG | - | chr3_3:72517923-72517942 | None:intergenic | 25.0% |
| !! | GTATTTGATACTTTAGAAGA+AGG | + | chr3_3:72516714-72516733 | Msa0470450:CDS | 25.0% |
| ! | ACTATAACGAAAGATAAAGA+TGG | + | chr3_3:72516792-72516811 | Msa0470450:CDS | 25.0% |
| !! | ATATTTTCTTTGCTCAAAAG+AGG | + | chr3_3:72516827-72516846 | Msa0470450:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+GGG | + | chr3_3:72516828-72516847 | Msa0470450:CDS | 25.0% |
| ! | GTAGAAAAAGAAAATTGACA+CGG | + | chr3_3:72516916-72516935 | Msa0470450:CDS | 25.0% |
| ! | TAGAAAAAGAAAATTGACAC+GGG | + | chr3_3:72516917-72516936 | Msa0470450:CDS | 25.0% |
| ! | ACATAATCATAGAAGAATGA+AGG | - | chr3_3:72517293-72517312 | None:intergenic | 25.0% |
| !! | ATTATGTAGCTGATAATGAA+GGG | + | chr3_3:72517306-72517325 | Msa0470450:intron | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | + | chr3_3:72517365-72517384 | Msa0470450:intron | 25.0% |
| ! | TCATAAAATACTTGTTTGTG+CGG | - | chr3_3:72517418-72517437 | None:intergenic | 25.0% |
| ! | TGATCTGTTATTATCATAAC+AGG | - | chr3_3:72517575-72517594 | None:intergenic | 25.0% |
| ! | ATGATAATAACAGATCAAGA+TGG | + | chr3_3:72517578-72517597 | Msa0470450:intron | 25.0% |
| ! | TGATAATAACAGATCAAGAT+GGG | + | chr3_3:72517579-72517598 | Msa0470450:intron | 25.0% |
| ! | AAAAAAACTTTCAGAAAAGG+TGG | + | chr3_3:72517670-72517689 | Msa0470450:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | + | chr3_3:72517671-72517690 | Msa0470450:intron | 25.0% |
| ! | AATTTGAATTGGAATTGGAA+TGG | + | chr3_3:72517768-72517787 | Msa0470450:CDS | 25.0% |
| !!! | TTCAATTGTTTTAGCTACAT+TGG | - | chr3_3:72517923-72517942 | None:intergenic | 25.0% |
| ! | TTTGATACTTTAGAAGAAGG+AGG | + | chr3_3:72516717-72516736 | Msa0470450:CDS | 30.0% |
| ! | AAGATAAAGATGGTGTCAAA+TGG | + | chr3_3:72516802-72516821 | Msa0470450:CDS | 30.0% |
| !!! | GGGTTTTAAAGAGGAAAAAA+AGG | + | chr3_3:72516848-72516867 | Msa0470450:CDS | 30.0% |
| ! | TTTTCAGCAATAAGCAATTG+TGG | - | chr3_3:72516882-72516901 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGAGAACTATTGA+TGG | + | chr3_3:72516960-72516979 | Msa0470450:CDS | 30.0% |
| ! | GAAGTCTCAAACTTTTATGA+AGG | + | chr3_3:72516990-72517009 | Msa0470450:intron | 30.0% |
| ! | TTTTATGAAGGTCATTCACA+TGG | + | chr3_3:72517002-72517021 | Msa0470450:intron | 30.0% |
| TTTATGAAGGTCATTCACAT+GGG | + | chr3_3:72517003-72517022 | Msa0470450:intron | 30.0% | |
| TTAGGAATTGTCTCTTTGAA+GGG | - | chr3_3:72517037-72517056 | None:intergenic | 30.0% | |
| TTATCAAATAATGAAGGAGC+AGG | + | chr3_3:72517136-72517155 | Msa0470450:intron | 30.0% | |
| GTCGGAAGTTATGAAAATAT+AGG | + | chr3_3:72517158-72517177 | Msa0470450:intron | 30.0% | |
| ! | GATTATGTAGCTGATAATGA+AGG | + | chr3_3:72517305-72517324 | Msa0470450:intron | 30.0% |
| ! | GAAGTTGAAACATGTGTTTT+GGG | + | chr3_3:72517328-72517347 | Msa0470450:intron | 30.0% |
| AGAAAGAAGAATCGTTTGTT+TGG | + | chr3_3:72517510-72517529 | Msa0470450:intron | 30.0% | |
| !! | TGAGACATTTTTGAAAGCAA+TGG | + | chr3_3:72517538-72517557 | Msa0470450:intron | 30.0% |
| !! | GAGACATTTTTGAAAGCAAT+GGG | + | chr3_3:72517539-72517558 | Msa0470450:intron | 30.0% |
| !! | AGACATTTTTGAAAGCAATG+GGG | + | chr3_3:72517540-72517559 | Msa0470450:intron | 30.0% |
| GATAATAACAGATCAAGATG+GGG | + | chr3_3:72517580-72517599 | Msa0470450:intron | 30.0% | |
| ATAATAACAGATCAAGATGG+GGG | + | chr3_3:72517581-72517600 | Msa0470450:intron | 30.0% | |
| GGAAGAATTTGAATTGGAAT+TGG | + | chr3_3:72517763-72517782 | Msa0470450:CDS | 30.0% | |
| AACAACAAAAAAAGAGAACG+AGG | + | chr3_3:72518016-72518035 | Msa0470450:CDS | 30.0% | |
| ! | TTTGATACTTTAGAAGAAGG+AGG | + | chr3_3:72516717-72516736 | Msa0470450:CDS | 30.0% |
| ! | AAGATAAAGATGGTGTCAAA+TGG | + | chr3_3:72516802-72516821 | Msa0470450:CDS | 30.0% |
| !!! | GGGTTTTAAAGAGGAAAAAA+AGG | + | chr3_3:72516848-72516867 | Msa0470450:CDS | 30.0% |
| ! | TTTTCAGCAATAAGCAATTG+TGG | - | chr3_3:72516882-72516901 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGAGAACTATTGA+TGG | + | chr3_3:72516960-72516979 | Msa0470450:CDS | 30.0% |
| ! | GAAGTCTCAAACTTTTATGA+AGG | + | chr3_3:72516990-72517009 | Msa0470450:intron | 30.0% |
| ! | TTTTATGAAGGTCATTCACA+TGG | + | chr3_3:72517002-72517021 | Msa0470450:intron | 30.0% |
| TTTATGAAGGTCATTCACAT+GGG | + | chr3_3:72517003-72517022 | Msa0470450:intron | 30.0% | |
| TTAGGAATTGTCTCTTTGAA+GGG | - | chr3_3:72517037-72517056 | None:intergenic | 30.0% | |
| TTATCAAATAATGAAGGAGC+AGG | + | chr3_3:72517136-72517155 | Msa0470450:intron | 30.0% | |
| GTCGGAAGTTATGAAAATAT+AGG | + | chr3_3:72517158-72517177 | Msa0470450:intron | 30.0% | |
| ! | GATTATGTAGCTGATAATGA+AGG | + | chr3_3:72517305-72517324 | Msa0470450:intron | 30.0% |
| ! | GAAGTTGAAACATGTGTTTT+GGG | + | chr3_3:72517328-72517347 | Msa0470450:intron | 30.0% |
| AGAAAGAAGAATCGTTTGTT+TGG | + | chr3_3:72517510-72517529 | Msa0470450:intron | 30.0% | |
| !! | TGAGACATTTTTGAAAGCAA+TGG | + | chr3_3:72517538-72517557 | Msa0470450:intron | 30.0% |
| !! | GAGACATTTTTGAAAGCAAT+GGG | + | chr3_3:72517539-72517558 | Msa0470450:intron | 30.0% |
| !! | AGACATTTTTGAAAGCAATG+GGG | + | chr3_3:72517540-72517559 | Msa0470450:intron | 30.0% |
| GATAATAACAGATCAAGATG+GGG | + | chr3_3:72517580-72517599 | Msa0470450:intron | 30.0% | |
| ATAATAACAGATCAAGATGG+GGG | + | chr3_3:72517581-72517600 | Msa0470450:intron | 30.0% | |
| GGAAGAATTTGAATTGGAAT+TGG | + | chr3_3:72517763-72517782 | Msa0470450:CDS | 30.0% | |
| AACAACAAAAAAAGAGAACG+AGG | + | chr3_3:72518016-72518035 | Msa0470450:CDS | 30.0% | |
| TGATCCAAAAAATACGTCAG+TGG | + | chr3_3:72516644-72516663 | Msa0470450:CDS | 35.0% | |
| !!! | CATTCCACTGACGTATTTTT+TGG | - | chr3_3:72516651-72516670 | None:intergenic | 35.0% |
| CAAAAAATACGTCAGTGGAA+TGG | + | chr3_3:72516649-72516668 | Msa0470450:CDS | 35.0% | |
| ATCAAATACCTTGCCAATCA+CGG | - | chr3_3:72516703-72516722 | None:intergenic | 35.0% | |
| !!! | CTCAAAAGAGGGTTTTAAAG+AGG | + | chr3_3:72516839-72516858 | Msa0470450:CDS | 35.0% |
| AAAAAGAAAATTGACACGGG+AGG | + | chr3_3:72516920-72516939 | Msa0470450:CDS | 35.0% | |
| AAAAGAAAATTGACACGGGA+GGG | + | chr3_3:72516921-72516940 | Msa0470450:CDS | 35.0% | |
| ! | TAGGAATTGTCTCTTTGAAG+GGG | - | chr3_3:72517036-72517055 | None:intergenic | 35.0% |
| CTTAGGAATTGTCTCTTTGA+AGG | - | chr3_3:72517038-72517057 | None:intergenic | 35.0% | |
| TTACACTTCTTGCTGATCTT+AGG | - | chr3_3:72517055-72517074 | None:intergenic | 35.0% | |
| ! | GGAAGTTGAAACATGTGTTT+TGG | + | chr3_3:72517327-72517346 | Msa0470450:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | + | chr3_3:72517373-72517392 | Msa0470450:intron | 35.0% |
| ! | ATGATTTTTGCACCATTCAC+TGG | + | chr3_3:72517434-72517453 | Msa0470450:intron | 35.0% |
| TGATGATTTATGCCAGTGAA+TGG | - | chr3_3:72517449-72517468 | None:intergenic | 35.0% | |
| ATCGTCAAAGCATAACCTTT+GGG | + | chr3_3:72517468-72517487 | Msa0470450:intron | 35.0% | |
| !! | GACATTTTTGAAAGCAATGG+GGG | + | chr3_3:72517541-72517560 | Msa0470450:intron | 35.0% |
| !! | ACATTTTTGAAAGCAATGGG+GGG | + | chr3_3:72517542-72517561 | Msa0470450:intron | 35.0% |
| AAAACCACTATTCTCATCCA+TGG | - | chr3_3:72517702-72517721 | None:intergenic | 35.0% | |
| TTCCAATTCAAATTCTTCCG+AGG | - | chr3_3:72517762-72517781 | None:intergenic | 35.0% | |
| ATCAAGACCCTTAGATGAAT+TGG | + | chr3_3:72517882-72517901 | Msa0470450:CDS | 35.0% | |
| AAAGCCTCCAATTCATCTAA+GGG | - | chr3_3:72517892-72517911 | None:intergenic | 35.0% | |
| AAAAGCCTCCAATTCATCTA+AGG | - | chr3_3:72517893-72517912 | None:intergenic | 35.0% | |
| ! | GATGAATTGGAGGCTTTTAT+TGG | + | chr3_3:72517895-72517914 | Msa0470450:CDS | 35.0% |
| ATACCAAAGGTTGTGGAAAA+CGG | + | chr3_3:72517965-72517984 | Msa0470450:CDS | 35.0% | |
| TGATCCAAAAAATACGTCAG+TGG | + | chr3_3:72516644-72516663 | Msa0470450:CDS | 35.0% | |
| !!! | CATTCCACTGACGTATTTTT+TGG | - | chr3_3:72516651-72516670 | None:intergenic | 35.0% |
| CAAAAAATACGTCAGTGGAA+TGG | + | chr3_3:72516649-72516668 | Msa0470450:CDS | 35.0% | |
| ATCAAATACCTTGCCAATCA+CGG | - | chr3_3:72516703-72516722 | None:intergenic | 35.0% | |
| !!! | CTCAAAAGAGGGTTTTAAAG+AGG | + | chr3_3:72516839-72516858 | Msa0470450:CDS | 35.0% |
| AAAAAGAAAATTGACACGGG+AGG | + | chr3_3:72516920-72516939 | Msa0470450:CDS | 35.0% | |
| AAAAGAAAATTGACACGGGA+GGG | + | chr3_3:72516921-72516940 | Msa0470450:CDS | 35.0% | |
| ! | TAGGAATTGTCTCTTTGAAG+GGG | - | chr3_3:72517036-72517055 | None:intergenic | 35.0% |
| CTTAGGAATTGTCTCTTTGA+AGG | - | chr3_3:72517038-72517057 | None:intergenic | 35.0% | |
| TTACACTTCTTGCTGATCTT+AGG | - | chr3_3:72517055-72517074 | None:intergenic | 35.0% | |
| ! | GGAAGTTGAAACATGTGTTT+TGG | + | chr3_3:72517327-72517346 | Msa0470450:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | + | chr3_3:72517373-72517392 | Msa0470450:intron | 35.0% |
| ! | ATGATTTTTGCACCATTCAC+TGG | + | chr3_3:72517434-72517453 | Msa0470450:intron | 35.0% |
| TGATGATTTATGCCAGTGAA+TGG | - | chr3_3:72517449-72517468 | None:intergenic | 35.0% | |
| ATCGTCAAAGCATAACCTTT+GGG | + | chr3_3:72517468-72517487 | Msa0470450:intron | 35.0% | |
| !! | GACATTTTTGAAAGCAATGG+GGG | + | chr3_3:72517541-72517560 | Msa0470450:intron | 35.0% |
| !! | ACATTTTTGAAAGCAATGGG+GGG | + | chr3_3:72517542-72517561 | Msa0470450:intron | 35.0% |
| AAAACCACTATTCTCATCCA+TGG | - | chr3_3:72517702-72517721 | None:intergenic | 35.0% | |
| TTCCAATTCAAATTCTTCCG+AGG | - | chr3_3:72517762-72517781 | None:intergenic | 35.0% | |
| ATCAAGACCCTTAGATGAAT+TGG | + | chr3_3:72517882-72517901 | Msa0470450:CDS | 35.0% | |
| AAAGCCTCCAATTCATCTAA+GGG | - | chr3_3:72517892-72517911 | None:intergenic | 35.0% | |
| AAAAGCCTCCAATTCATCTA+AGG | - | chr3_3:72517893-72517912 | None:intergenic | 35.0% | |
| ! | GATGAATTGGAGGCTTTTAT+TGG | + | chr3_3:72517895-72517914 | Msa0470450:CDS | 35.0% |
| ATACCAAAGGTTGTGGAAAA+CGG | + | chr3_3:72517965-72517984 | Msa0470450:CDS | 35.0% | |
| TCAAATACCTTGCCAATCAC+GGG | - | chr3_3:72516702-72516721 | None:intergenic | 40.0% | |
| AAAGCTTATGCTTATGTCGC+TGG | + | chr3_3:72516750-72516769 | Msa0470450:CDS | 40.0% | |
| TTCCTGCAATAGAGCTAATG+TGG | + | chr3_3:72517100-72517119 | Msa0470450:intron | 40.0% | |
| TCCTGCAATAGAGCTAATGT+GGG | + | chr3_3:72517101-72517120 | Msa0470450:intron | 40.0% | |
| CAAATAATGAAGGAGCAGGT+CGG | + | chr3_3:72517140-72517159 | Msa0470450:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | + | chr3_3:72517335-72517354 | Msa0470450:intron | 40.0% |
| CATCGTCAAAGCATAACCTT+TGG | + | chr3_3:72517467-72517486 | Msa0470450:intron | 40.0% | |
| TCGTCAAAGCATAACCTTTG+GGG | + | chr3_3:72517469-72517488 | Msa0470450:intron | 40.0% | |
| TATGAAGAATGCACTAGGAG+CGG | + | chr3_3:72517604-72517623 | Msa0470450:intron | 40.0% | |
| !!! | CACTAGGAGCGGTTTTAAAA+GGG | + | chr3_3:72517615-72517634 | Msa0470450:intron | 40.0% |
| ! | CGTCTCATAGATTTTGCATG+TGG | + | chr3_3:72517639-72517658 | Msa0470450:intron | 40.0% |
| AGTTCCATGGATGAGAATAG+TGG | + | chr3_3:72517695-72517714 | Msa0470450:CDS | 40.0% | |
| ! | ATCGTTTCAAGTCATGTGTC+TGG | + | chr3_3:72517726-72517745 | Msa0470450:CDS | 40.0% |
| GTCCTCGGAAGAATTTGAAT+TGG | + | chr3_3:72517757-72517776 | Msa0470450:CDS | 40.0% | |
| TGAGGAGCAATTTCTCTTTG+AGG | - | chr3_3:72517804-72517823 | None:intergenic | 40.0% | |
| AAGACCCTTAGATGAATTGG+AGG | + | chr3_3:72517885-72517904 | Msa0470450:CDS | 40.0% | |
| TTGGTATTTGAAGGTTCAGG+TGG | - | chr3_3:72517952-72517971 | None:intergenic | 40.0% | |
| CCTTTGGTATTTGAAGGTTC+AGG | - | chr3_3:72517955-72517974 | None:intergenic | 40.0% | |
| CCTGAACCTTCAAATACCAA+AGG | + | chr3_3:72517952-72517971 | Msa0470450:CDS | 40.0% | |
| CCACAACCTTTGGTATTTGA+AGG | - | chr3_3:72517961-72517980 | None:intergenic | 40.0% | |
| CCTTCAAATACCAAAGGTTG+TGG | + | chr3_3:72517958-72517977 | Msa0470450:CDS | 40.0% | |
| GTTGTGGAAAACGGATCAAA+GGG | + | chr3_3:72517974-72517993 | Msa0470450:CDS | 40.0% | |
| TTGTGGAAAACGGATCAAAG+GGG | + | chr3_3:72517975-72517994 | Msa0470450:CDS | 40.0% | |
| TCAAATACCTTGCCAATCAC+GGG | - | chr3_3:72516702-72516721 | None:intergenic | 40.0% | |
| AAAGCTTATGCTTATGTCGC+TGG | + | chr3_3:72516750-72516769 | Msa0470450:CDS | 40.0% | |
| TTCCTGCAATAGAGCTAATG+TGG | + | chr3_3:72517100-72517119 | Msa0470450:intron | 40.0% | |
| TCCTGCAATAGAGCTAATGT+GGG | + | chr3_3:72517101-72517120 | Msa0470450:intron | 40.0% | |
| CAAATAATGAAGGAGCAGGT+CGG | + | chr3_3:72517140-72517159 | Msa0470450:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | + | chr3_3:72517335-72517354 | Msa0470450:intron | 40.0% |
| CATCGTCAAAGCATAACCTT+TGG | + | chr3_3:72517467-72517486 | Msa0470450:intron | 40.0% | |
| TCGTCAAAGCATAACCTTTG+GGG | + | chr3_3:72517469-72517488 | Msa0470450:intron | 40.0% | |
| TATGAAGAATGCACTAGGAG+CGG | + | chr3_3:72517604-72517623 | Msa0470450:intron | 40.0% | |
| !!! | CACTAGGAGCGGTTTTAAAA+GGG | + | chr3_3:72517615-72517634 | Msa0470450:intron | 40.0% |
| ! | CGTCTCATAGATTTTGCATG+TGG | + | chr3_3:72517639-72517658 | Msa0470450:intron | 40.0% |
| AGTTCCATGGATGAGAATAG+TGG | + | chr3_3:72517695-72517714 | Msa0470450:CDS | 40.0% | |
| ! | ATCGTTTCAAGTCATGTGTC+TGG | + | chr3_3:72517726-72517745 | Msa0470450:CDS | 40.0% |
| GTCCTCGGAAGAATTTGAAT+TGG | + | chr3_3:72517757-72517776 | Msa0470450:CDS | 40.0% | |
| TGAGGAGCAATTTCTCTTTG+AGG | - | chr3_3:72517804-72517823 | None:intergenic | 40.0% | |
| AAGACCCTTAGATGAATTGG+AGG | + | chr3_3:72517885-72517904 | Msa0470450:CDS | 40.0% | |
| TTGGTATTTGAAGGTTCAGG+TGG | - | chr3_3:72517952-72517971 | None:intergenic | 40.0% | |
| CCTTTGGTATTTGAAGGTTC+AGG | - | chr3_3:72517955-72517974 | None:intergenic | 40.0% | |
| CCTGAACCTTCAAATACCAA+AGG | + | chr3_3:72517952-72517971 | Msa0470450:CDS | 40.0% | |
| CCACAACCTTTGGTATTTGA+AGG | - | chr3_3:72517961-72517980 | None:intergenic | 40.0% | |
| CCTTCAAATACCAAAGGTTG+TGG | + | chr3_3:72517958-72517977 | Msa0470450:CDS | 40.0% | |
| GTTGTGGAAAACGGATCAAA+GGG | + | chr3_3:72517974-72517993 | Msa0470450:CDS | 40.0% | |
| TTGTGGAAAACGGATCAAAG+GGG | + | chr3_3:72517975-72517994 | Msa0470450:CDS | 40.0% | |
| GGATCATTACCGTCTTTCGA+CGG | - | chr3_3:72516630-72516649 | None:intergenic | 45.0% | |
| CCTGCAATAGAGCTAATGTG+GGG | + | chr3_3:72517102-72517121 | Msa0470450:intron | 45.0% | |
| TTTCAAAAGAGCAGCCCCAA+AGG | - | chr3_3:72517486-72517505 | None:intergenic | 45.0% | |
| !!! | GCACTAGGAGCGGTTTTAAA+AGG | + | chr3_3:72517614-72517633 | Msa0470450:intron | 45.0% |
| AGAAAAGGTGGGTAGTTCCA+TGG | + | chr3_3:72517682-72517701 | Msa0470450:intron | 45.0% | |
| ATTGCTCCTCATTTACGACG+AGG | + | chr3_3:72517813-72517832 | Msa0470450:intron | 45.0% | |
| TTGCTCCTCATTTACGACGA+GGG | + | chr3_3:72517814-72517833 | Msa0470450:intron | 45.0% | |
| ! | GATCCGTTTTCCACAACCTT+TGG | - | chr3_3:72517971-72517990 | None:intergenic | 45.0% |
| GGTTGTGGAAAACGGATCAA+AGG | + | chr3_3:72517973-72517992 | Msa0470450:CDS | 45.0% | |
| TGTGGAAAACGGATCAAAGG+GGG | + | chr3_3:72517976-72517995 | Msa0470450:CDS | 45.0% | |
| GGGACAATTGCGACTATCAT+GGG | - | chr3_3:72518070-72518089 | None:intergenic | 45.0% | |
| TGGGACAATTGCGACTATCA+TGG | - | chr3_3:72518071-72518090 | None:intergenic | 45.0% | |
| GGATCATTACCGTCTTTCGA+CGG | - | chr3_3:72516630-72516649 | None:intergenic | 45.0% | |
| CCTGCAATAGAGCTAATGTG+GGG | + | chr3_3:72517102-72517121 | Msa0470450:intron | 45.0% | |
| TTTCAAAAGAGCAGCCCCAA+AGG | - | chr3_3:72517486-72517505 | None:intergenic | 45.0% | |
| !!! | GCACTAGGAGCGGTTTTAAA+AGG | + | chr3_3:72517614-72517633 | Msa0470450:intron | 45.0% |
| AGAAAAGGTGGGTAGTTCCA+TGG | + | chr3_3:72517682-72517701 | Msa0470450:intron | 45.0% | |
| ATTGCTCCTCATTTACGACG+AGG | + | chr3_3:72517813-72517832 | Msa0470450:intron | 45.0% | |
| TTGCTCCTCATTTACGACGA+GGG | + | chr3_3:72517814-72517833 | Msa0470450:intron | 45.0% | |
| ! | GATCCGTTTTCCACAACCTT+TGG | - | chr3_3:72517971-72517990 | None:intergenic | 45.0% |
| GGTTGTGGAAAACGGATCAA+AGG | + | chr3_3:72517973-72517992 | Msa0470450:CDS | 45.0% | |
| TGTGGAAAACGGATCAAAGG+GGG | + | chr3_3:72517976-72517995 | Msa0470450:CDS | 45.0% | |
| GGGACAATTGCGACTATCAT+GGG | - | chr3_3:72518070-72518089 | None:intergenic | 45.0% | |
| TGGGACAATTGCGACTATCA+TGG | - | chr3_3:72518071-72518090 | None:intergenic | 45.0% | |
| TTACCCTCACCGTCGAAAGA+CGG | + | chr3_3:72516618-72516637 | Msa0470450:CDS | 50.0% | |
| TTACCGTCTTTCGACGGTGA+GGG | - | chr3_3:72516624-72516643 | None:intergenic | 50.0% | |
| ATTACCGTCTTTCGACGGTG+AGG | - | chr3_3:72516625-72516644 | None:intergenic | 50.0% | |
| GATGACCTCAAACCCGTGAT+TGG | + | chr3_3:72516687-72516706 | Msa0470450:CDS | 50.0% | |
| !! | CCCCACATTAGCTCTATTGC+AGG | - | chr3_3:72517105-72517124 | None:intergenic | 50.0% |
| ! | GGGGGTATGAAGAATGCACT+AGG | + | chr3_3:72517599-72517618 | Msa0470450:intron | 50.0% |
| ! | TGTCTGGAACTCAGAGTCCT+CGG | + | chr3_3:72517742-72517761 | Msa0470450:CDS | 50.0% |
| TACAGCCCTCGTCGTAAATG+AGG | - | chr3_3:72517822-72517841 | None:intergenic | 50.0% | |
| GTGGAAAACGGATCAAAGGG+GGG | + | chr3_3:72517977-72517996 | Msa0470450:CDS | 50.0% | |
| GATCAAAGGGGGGAAAGAGA+AGG | + | chr3_3:72517987-72518006 | Msa0470450:CDS | 50.0% | |
| ! | CGAGGCTTTGTAAAGCTTGC+AGG | + | chr3_3:72518034-72518053 | Msa0470450:CDS | 50.0% |
| TTACCCTCACCGTCGAAAGA+CGG | + | chr3_3:72516618-72516637 | Msa0470450:CDS | 50.0% | |
| TTACCGTCTTTCGACGGTGA+GGG | - | chr3_3:72516624-72516643 | None:intergenic | 50.0% | |
| ATTACCGTCTTTCGACGGTG+AGG | - | chr3_3:72516625-72516644 | None:intergenic | 50.0% | |
| GATGACCTCAAACCCGTGAT+TGG | + | chr3_3:72516687-72516706 | Msa0470450:CDS | 50.0% | |
| !! | CCCCACATTAGCTCTATTGC+AGG | - | chr3_3:72517105-72517124 | None:intergenic | 50.0% |
| ! | GGGGGTATGAAGAATGCACT+AGG | + | chr3_3:72517599-72517618 | Msa0470450:intron | 50.0% |
| ! | TGTCTGGAACTCAGAGTCCT+CGG | + | chr3_3:72517742-72517761 | Msa0470450:CDS | 50.0% |
| TACAGCCCTCGTCGTAAATG+AGG | - | chr3_3:72517822-72517841 | None:intergenic | 50.0% | |
| GTGGAAAACGGATCAAAGGG+GGG | + | chr3_3:72517977-72517996 | Msa0470450:CDS | 50.0% | |
| GATCAAAGGGGGGAAAGAGA+AGG | + | chr3_3:72517987-72518006 | Msa0470450:CDS | 50.0% | |
| ! | CGAGGCTTTGTAAAGCTTGC+AGG | + | chr3_3:72518034-72518053 | Msa0470450:CDS | 50.0% |
| ! | GGAATGGATTCCTGCGTGTG+AGG | + | chr3_3:72516665-72516684 | Msa0470450:CDS | 55.0% |
| TTGAGGTCATCCTCACACGC+AGG | - | chr3_3:72516678-72516697 | None:intergenic | 55.0% | |
| CCTTGCCAATCACGGGTTTG+AGG | - | chr3_3:72516695-72516714 | None:intergenic | 55.0% | |
| CCTCAAACCCGTGATTGGCA+AGG | + | chr3_3:72516692-72516711 | Msa0470450:CDS | 55.0% | |
| AGGGGGGAAAGAGAAGGCAA+TGG | + | chr3_3:72517993-72518012 | Msa0470450:CDS | 55.0% | |
| ! | GGAATGGATTCCTGCGTGTG+AGG | + | chr3_3:72516665-72516684 | Msa0470450:CDS | 55.0% |
| TTGAGGTCATCCTCACACGC+AGG | - | chr3_3:72516678-72516697 | None:intergenic | 55.0% | |
| CCTTGCCAATCACGGGTTTG+AGG | - | chr3_3:72516695-72516714 | None:intergenic | 55.0% | |
| CCTCAAACCCGTGATTGGCA+AGG | + | chr3_3:72516692-72516711 | Msa0470450:CDS | 55.0% | |
| AGGGGGGAAAGAGAAGGCAA+TGG | + | chr3_3:72517993-72518012 | Msa0470450:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72516591 | 72518107 | 72516591 | ID=Msa0470450;Name=Msa0470450 |
| chr3_3 | mRNA | 72516591 | 72518107 | 72516591 | ID=Msa0470450-mRNA-1;Parent=Msa0470450;Name=Msa0470450-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.66|1|1|3|0|246 |
| chr3_3 | exon | 72516591 | 72516981 | 72516591 | ID=Msa0470450-mRNA-1:exon:18146;Parent=Msa0470450-mRNA-1 |
| chr3_3 | exon | 72517684 | 72517798 | 72517684 | ID=Msa0470450-mRNA-1:exon:18147;Parent=Msa0470450-mRNA-1 |
| chr3_3 | exon | 72517873 | 72518107 | 72517873 | ID=Msa0470450-mRNA-1:exon:18148;Parent=Msa0470450-mRNA-1 |
| chr3_3 | CDS | 72516591 | 72516981 | 72516591 | ID=Msa0470450-mRNA-1:cds;Parent=Msa0470450-mRNA-1 |
| chr3_3 | CDS | 72517684 | 72517798 | 72517684 | ID=Msa0470450-mRNA-1:cds;Parent=Msa0470450-mRNA-1 |
| chr3_3 | CDS | 72517873 | 72518107 | 72517873 | ID=Msa0470450-mRNA-1:cds;Parent=Msa0470450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
