Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470520 | KEH41184.1 | 67.333 | 300 | 76 | 3 | 37 | 334 | 27 | 306 | 3.70e-119 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470520 | A0A072VGK8 | 67.333 | 300 | 76 | 3 | 37 | 334 | 27 | 306 | 1.77e-119 | 361 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0470520 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470520 | MtrunA17_Chr1g0169171 | 68.966 | 290 | 68 | 4 | 47 | 334 | 4 | 273 | 5.97e-122 | 357 |
| Msa0470520 | MtrunA17_Chr3g0125151 | 86.458 | 96 | 13 | 0 | 239 | 334 | 1 | 96 | 2.70e-57 | 184 |
| Msa0470520 | MtrunA17_Chr3g0125161 | 78.125 | 96 | 21 | 0 | 37 | 132 | 38 | 133 | 9.61e-46 | 156 |
| Msa0470520 | MtrunA17_Chr1g0169081 | 69.767 | 86 | 26 | 0 | 37 | 122 | 24 | 109 | 2.83e-31 | 122 |
| Msa0470520 | MtrunA17_Chr1g0169161 | 66.279 | 86 | 29 | 0 | 37 | 122 | 27 | 112 | 4.45e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 91 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAGCCTCTTCACGATTA+TGG | 0.211387 | 3_3:-72622318 | Msa0470520:CDS |
| TGTTGTCAGGTTTCCGTTAT+CGG | 0.266807 | 3_3:-72622289 | Msa0470520:CDS |
| ATTTCATCATCTTCAAGTTT+TGG | 0.269280 | 3_3:+72621031 | None:intergenic |
| CAGAGAAGAAAATTCTTTAG+AGG | 0.300748 | 3_3:-72621564 | Msa0470520:CDS |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 3_3:+72620986 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 3_3:-72620429 | Msa0470520:CDS |
| ACTTTCCCGGCGGTGGAAAC+GGG | 0.333345 | 3_3:-72618778 | Msa0470520:CDS |
| AACTTTCCCGGCGGTGGAAA+CGG | 0.347641 | 3_3:-72618779 | Msa0470520:CDS |
| TGCCATATTGCGTGTCCGCC+TGG | 0.359320 | 3_3:+72618938 | None:intergenic |
| CAGAGCCTCTTCACGATTAT+GGG | 0.367420 | 3_3:-72622317 | Msa0470520:CDS |
| ATGAGCTTCACAAAAGCAAT+TGG | 0.382357 | 3_3:+72621706 | None:intergenic |
| TATGTTGGAGGATGAGGAAG+AGG | 0.406388 | 3_3:-72621426 | Msa0470520:CDS |
| AGCTCAAATGGAGGCGGTGG+TGG | 0.411833 | 3_3:-72618902 | Msa0470520:CDS |
| ACTTTCCTAGTGGTGGTAAA+GGG | 0.412711 | 3_3:-72618868 | Msa0470520:CDS |
| GGCCAGGCGGACACGCAATA+TGG | 0.417457 | 3_3:-72618940 | Msa0470520:CDS |
| GTCATAAACTTTCCCGGCGG+TGG | 0.417743 | 3_3:-72618785 | Msa0470520:CDS |
| TAATAATATGTTGGAGGATG+AGG | 0.419640 | 3_3:-72621432 | Msa0470520:CDS |
| GTTGTCAGGTTTCCGTTATC+GGG | 0.421265 | 3_3:-72622288 | Msa0470520:CDS |
| ACATTACAGACCCAACGAAT+TGG | 0.430909 | 3_3:-72620960 | Msa0470520:intron |
| AGCACCAGTGGAAGCTCAAA+TGG | 0.434818 | 3_3:-72618914 | Msa0470520:CDS |
| AACTTTCCTAGTGGTGGTAA+AGG | 0.439112 | 3_3:-72618869 | Msa0470520:CDS |
| GTGTTGATGGCTATATAGTT+TGG | 0.439892 | 3_3:-72618961 | Msa0470520:CDS |
| ATTATGGGCCACCTGTTGTC+AGG | 0.444761 | 3_3:-72622302 | Msa0470520:CDS |
| GTATGTGTTGTGTTGATTTG+TGG | 0.448016 | 3_3:+72620457 | None:intergenic |
| CGCGTCAAAGCACACTCTAT+TGG | 0.457030 | 3_3:-72621623 | Msa0470520:CDS |
| GCAAATGTCATAAACTTTCC+CGG | 0.460290 | 3_3:-72618791 | Msa0470520:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 3_3:+72620636 | None:intergenic |
| GATTGTGGTTTAGGGAGCAT+TGG | 0.466163 | 3_3:-72621070 | Msa0470520:intron |
| AAGAACTAAACCAATTCGTT+GGG | 0.487807 | 3_3:+72620950 | None:intergenic |
| ATGAAAGCAGAAAAGAAGAA+AGG | 0.488071 | 3_3:-72621242 | Msa0470520:CDS |
| AAAGAACTAAACCAATTCGT+TGG | 0.488811 | 3_3:+72620949 | None:intergenic |
| CTCTTCCTCTATGATCCCTT+AGG | 0.492258 | 3_3:+72621651 | None:intergenic |
| GCCTCCATTTGAGCTTCCAC+TGG | 0.492305 | 3_3:+72618910 | None:intergenic |
| TTGTGGCAATATGTGATGAT+AGG | 0.496982 | 3_3:+72620474 | None:intergenic |
| GGAGGAAAATAATAATATGT+TGG | 0.500575 | 3_3:-72621441 | Msa0470520:CDS |
| AATGACGGGTGGCCCGATAA+CGG | 0.503386 | 3_3:+72622276 | None:intergenic |
| GGGATCATAGAGGAAGAGAT+TGG | 0.510517 | 3_3:-72621646 | Msa0470520:CDS |
| CTTTCCCGGCGGTGGAAACG+GGG | 0.511813 | 3_3:-72618777 | Msa0470520:CDS |
| ATCATAAACTTTCCTAGTGG+TGG | 0.514983 | 3_3:-72618875 | Msa0470520:CDS |
| AATGGTAGAGGAAGAAGAAG+AGG | 0.518113 | 3_3:-72621348 | Msa0470520:CDS |
| GATAACGGAAACCTGACAAC+AGG | 0.520597 | 3_3:+72622291 | None:intergenic |
| AAGAAGAAAGGAGTTGACAA+GGG | 0.522584 | 3_3:-72621230 | Msa0470520:CDS |
| GAAATACGTAAATGGAAAGA+TGG | 0.523151 | 3_3:-72620421 | Msa0470520:CDS |
| CGATGATGAGGATGAGGATG+AGG | 0.525411 | 3_3:-72621291 | Msa0470520:CDS |
| GGAAAATAATAATATGTTGG+AGG | 0.527415 | 3_3:-72621438 | Msa0470520:CDS |
| GATGGCTATATAGTTTGGCC+AGG | 0.530422 | 3_3:-72618956 | Msa0470520:CDS |
| GAAGAGGAAGAAGATGAAGA+TGG | 0.532114 | 3_3:-72621332 | Msa0470520:CDS |
| GTTGAAATGTATATTCAGCC+AGG | 0.532204 | 3_3:-72621004 | Msa0470520:CDS |
| TTGGAGGATGAGGAAGAGGA+AGG | 0.540476 | 3_3:-72621422 | Msa0470520:CDS |
| TGAAGACGATGATGAGGATG+AGG | 0.541376 | 3_3:-72621297 | Msa0470520:CDS |
| AAAGAAGAAAGGAGTTGACA+AGG | 0.542225 | 3_3:-72621231 | Msa0470520:CDS |
| GAGGGACATAAGTCAAGCGT+TGG | 0.544112 | 3_3:-72618734 | Msa0470520:CDS |
| AAGCACACTCTATTGGTGGC+AGG | 0.545525 | 3_3:-72621616 | Msa0470520:CDS |
| TGAGCTTCACAAAAGCAATT+GGG | 0.545679 | 3_3:+72621707 | None:intergenic |
| GTCAAAGCACACTCTATTGG+TGG | 0.549843 | 3_3:-72621620 | Msa0470520:CDS |
| AAAGACAAAGGTAATGGATG+AGG | 0.553323 | 3_3:-72621462 | Msa0470520:CDS |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 3_3:+72621531 | None:intergenic |
| GACAAAGGTAATGGATGAGG+AGG | 0.556485 | 3_3:-72621459 | Msa0470520:CDS |
| ATTTGTAGTTGGTGAGACAC+AGG | 0.559962 | 3_3:-72619002 | Msa0470520:intron |
| GGAAGCTCAAATGGAGGCGG+TGG | 0.560448 | 3_3:-72618905 | Msa0470520:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 3_3:-72620636 | Msa0470520:intron |
| CTTTCCTAGTGGTGGTAAAG+GGG | 0.585504 | 3_3:-72618867 | Msa0470520:CDS |
| GATGATGATGATGGTGATGG+TGG | 0.586203 | 3_3:-72621398 | Msa0470520:CDS |
| TTTCCTAGTGGTGGTAAAGG+GGG | 0.588254 | 3_3:-72618866 | Msa0470520:CDS |
| AGCTCATGCTTTCGAAACAA+AGG | 0.588331 | 3_3:-72621690 | Msa0470520:CDS |
| GAAGCGTGAACATAAATGAC+GGG | 0.593029 | 3_3:+72622262 | None:intergenic |
| GGCTATATAGTTTGGCCAGG+CGG | 0.594243 | 3_3:-72618953 | Msa0470520:CDS |
| CGACGGTTATACAATGGTAG+AGG | 0.603192 | 3_3:-72621360 | Msa0470520:CDS |
| TTTCCCGGCGGTGGAAACGG+GGG | 0.606258 | 3_3:-72618776 | Msa0470520:CDS |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 3_3:+72620660 | None:intergenic |
| AACGGAAACCTGACAACAGG+TGG | 0.610801 | 3_3:+72622294 | None:intergenic |
| TTTATCCTAAGGGATCATAG+AGG | 0.616153 | 3_3:-72621656 | Msa0470520:CDS |
| TGAAGCGTGAACATAAATGA+CGG | 0.621745 | 3_3:+72622261 | None:intergenic |
| AGTGGAAGCTCAAATGGAGG+CGG | 0.627374 | 3_3:-72618908 | Msa0470520:CDS |
| TGATGATGAAGACGATGATG+AGG | 0.632639 | 3_3:-72621303 | Msa0470520:CDS |
| GCAATATGGCAAAGCACCAG+TGG | 0.640117 | 3_3:-72618926 | Msa0470520:CDS |
| GAAGAAGATGAAGATGGTGA+TGG | 0.640201 | 3_3:-72621326 | Msa0470520:CDS |
| GAGGAAGGTGATGATGATGA+TGG | 0.640863 | 3_3:-72621407 | Msa0470520:CDS |
| GGTGGCCCATAATCGTGAAG+AGG | 0.641994 | 3_3:+72622312 | None:intergenic |
| ATAACAATTATACCTTGCAG+TGG | 0.648271 | 3_3:+72620624 | None:intergenic |
| CCCGGAAGTGGAAAACGGGG+TGG | 0.655848 | 3_3:-72618818 | Msa0470520:CDS |
| GGTGATGATGATGATGGTGA+TGG | 0.656321 | 3_3:-72621401 | Msa0470520:CDS |
| ACAACACATACCGAAAAGAG+AGG | 0.656927 | 3_3:-72620445 | Msa0470520:CDS |
| ACCAGTGGAAGCTCAAATGG+AGG | 0.663598 | 3_3:-72618911 | Msa0470520:CDS |
| ATTATCATAAACTTTCCTAG+TGG | 0.664481 | 3_3:-72618878 | Msa0470520:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 3_3:+72620637 | None:intergenic |
| GCGTGAACATAAATGACGGG+TGG | 0.678302 | 3_3:+72622265 | None:intergenic |
| TTTCCCGGAAGTGGAAAACG+GGG | 0.695053 | 3_3:-72618821 | Msa0470520:CDS |
| TGACGACGACGGTTATACAA+TGG | 0.701620 | 3_3:-72621366 | Msa0470520:CDS |
| GGAGATGATGATGACGACGA+CGG | 0.751131 | 3_3:-72621377 | Msa0470520:CDS |
| AATGTCATAAACTTTCCCGG+CGG | 0.795660 | 3_3:-72618788 | Msa0470520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAT+TGG | - | chr3_3:72621684-72621703 | Msa0470520:CDS | 0.0% |
| !!! | AAGAAAATATTTGAATTTTT+AGG | - | chr3_3:72619001-72619020 | Msa0470520:intron | 10.0% |
| !!! | CAGTTTTTTTTTTTTTTTTT+GGG | + | chr3_3:72619248-72619267 | None:intergenic | 10.0% |
| !!! | TCAGTTTTTTTTTTTTTTTT+TGG | + | chr3_3:72619249-72619268 | None:intergenic | 10.0% |
| !!! | TTTGTAAAATATTTTTATGA+AGG | - | chr3_3:72620818-72620837 | Msa0470520:intron | 10.0% |
| !!! | TTGTAAAATATTTTTATGAA+GGG | - | chr3_3:72620819-72620838 | Msa0470520:intron | 10.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | - | chr3_3:72618956-72618975 | Msa0470520:CDS | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | - | chr3_3:72620346-72620365 | Msa0470520:intron | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | + | chr3_3:72620445-72620464 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | - | chr3_3:72620444-72620463 | Msa0470520:CDS | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | - | chr3_3:72620445-72620464 | Msa0470520:CDS | 15.0% |
| !! | AATACATAATAATTTCTTCT+TGG | - | chr3_3:72621421-72621440 | Msa0470520:CDS | 15.0% |
| !!! | TATATATTGTTTTCAATTGT+TGG | + | chr3_3:72621899-72621918 | None:intergenic | 15.0% |
| !!! | AGTTTTTATTTATTTGTAGT+TGG | - | chr3_3:72622023-72622042 | Msa0470520:intron | 15.0% |
| !! | AACTTAATAATAATAATCGG+AGG | + | chr3_3:72619170-72619189 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | - | chr3_3:72619369-72619388 | Msa0470520:intron | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | - | chr3_3:72619370-72619389 | Msa0470520:intron | 20.0% |
| !!! | TAAACAAGTTTCAAGTTAAT+AGG | + | chr3_3:72620798-72620817 | None:intergenic | 20.0% |
| !!! | GTGTTTTTATAACTTTCTTA+TGG | - | chr3_3:72620841-72620860 | Msa0470520:intron | 20.0% |
| !! | CTTAATAATATTATCCAATG+AGG | + | chr3_3:72620908-72620927 | None:intergenic | 20.0% |
| !! | ACTTTATGTATAAAACAGTT+AGG | + | chr3_3:72621319-72621338 | None:intergenic | 20.0% |
| !!! | ACTGTTTTATACATAAAGTT+TGG | - | chr3_3:72621320-72621339 | Msa0470520:CDS | 20.0% |
| !! | CTGACAATTTGTTTATAAGT+GGG | - | chr3_3:72618863-72618882 | Msa0470520:CDS | 25.0% |
| !! | TGACAATTTGTTTATAAGTG+GGG | - | chr3_3:72618864-72618883 | Msa0470520:CDS | 25.0% |
| ! | AAATTGAAATCTCTTCGAAA+TGG | + | chr3_3:72618941-72618960 | None:intergenic | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | - | chr3_3:72619024-72619043 | Msa0470520:intron | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | + | chr3_3:72619508-72619527 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | - | chr3_3:72619562-72619581 | Msa0470520:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | - | chr3_3:72619595-72619614 | Msa0470520:intron | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | - | chr3_3:72619598-72619617 | Msa0470520:intron | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | - | chr3_3:72619951-72619970 | Msa0470520:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | - | chr3_3:72619958-72619977 | Msa0470520:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | + | chr3_3:72620008-72620027 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | + | chr3_3:72620062-72620081 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | + | chr3_3:72620291-72620310 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | + | chr3_3:72620440-72620459 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | - | chr3_3:72620515-72620534 | Msa0470520:intron | 25.0% |
| ! | CAAATCAATAGAAATGCTTA+GGG | - | chr3_3:72620730-72620749 | Msa0470520:intron | 25.0% |
| !! | TTTTCCTTGTAATAACTGTT+TGG | - | chr3_3:72621055-72621074 | Msa0470520:CDS | 25.0% |
| !!! | TTGTAACCTTTGAAACTTAA+AGG | + | chr3_3:72621099-72621118 | None:intergenic | 25.0% |
| ! | AAGTTTCAAAGGTTACAAAT+AGG | - | chr3_3:72621101-72621120 | Msa0470520:intron | 25.0% |
| !!! | TCATTTTCACCTTTTGAAAA+TGG | - | chr3_3:72621348-72621367 | Msa0470520:CDS | 25.0% |
| !! | GTGATTTTTCCATTTTCAAA+AGG | + | chr3_3:72621360-72621379 | None:intergenic | 25.0% |
| ! | TTTCAAAACAAACTCTAAGT+AGG | - | chr3_3:72621793-72621812 | Msa0470520:intron | 25.0% |
| !! | TATTGTTTTCAATTGTTGGA+AGG | + | chr3_3:72621895-72621914 | None:intergenic | 25.0% |
| !! | AAAGAAGAAAAAAGTGTACA+TGG | + | chr3_3:72621989-72622008 | None:intergenic | 25.0% |
| ! | CAGGAATCAAAGATAAAAAT+TGG | - | chr3_3:72622053-72622072 | Msa0470520:intron | 25.0% |
| !!! | AAGATAAAAATTGGTGTTGA+TGG | - | chr3_3:72622062-72622081 | Msa0470520:intron | 25.0% |
| ! | ATTATCATAAACTTTCCTAG+TGG | - | chr3_3:72622158-72622177 | Msa0470520:intron | 25.0% |
| CCACTTATAAACAAATTGTC+AGG | + | chr3_3:72618865-72618884 | None:intergenic | 30.0% | |
| ! | CCTGACAATTTGTTTATAAG+TGG | - | chr3_3:72618862-72618881 | Msa0470520:CDS | 30.0% |
| ! | GACAATTTGTTTATAAGTGG+GGG | - | chr3_3:72618865-72618884 | Msa0470520:CDS | 30.0% |
| ! | AGATCAATGTTACTTAAGAG+TGG | + | chr3_3:72619277-72619296 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCTTTAG+AGG | - | chr3_3:72619472-72619491 | Msa0470520:intron | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | - | chr3_3:72619568-72619587 | Msa0470520:intron | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | - | chr3_3:72619604-72619623 | Msa0470520:intron | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | - | chr3_3:72619794-72619813 | Msa0470520:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | + | chr3_3:72619959-72619978 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | - | chr3_3:72619957-72619976 | Msa0470520:intron | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | + | chr3_3:72620089-72620108 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | + | chr3_3:72620090-72620109 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | - | chr3_3:72620207-72620226 | Msa0470520:intron | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | - | chr3_3:72620208-72620227 | Msa0470520:intron | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr3_3:72620379-72620398 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr3_3:72620415-72620434 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | + | chr3_3:72620509-72620528 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | - | chr3_3:72620615-72620634 | Msa0470520:intron | 30.0% | |
| GCAAATCAATAGAAATGCTT+AGG | - | chr3_3:72620729-72620748 | Msa0470520:intron | 30.0% | |
| CTATTACAGAATCATTTCTC+TGG | - | chr3_3:72620934-72620953 | Msa0470520:intron | 30.0% | |
| !!! | TCATTTCTCTGGTTTTACAT+TGG | - | chr3_3:72620945-72620964 | Msa0470520:intron | 30.0% |
| TTGTTGATCAGAATTGAGTT+TGG | - | chr3_3:72621005-72621024 | Msa0470520:CDS | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr3_3:72621119-72621138 | Msa0470520:intron | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr3_3:72621215-72621234 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr3_3:72621130-72621149 | Msa0470520:intron | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr3_3:72621186-72621205 | Msa0470520:CDS | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr3_3:72621130-72621149 | None:intergenic | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr3_3:72621215-72621234 | Msa0470520:CDS | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr3_3:72621119-72621138 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTACAGAT+AGG | + | chr3_3:72621242-72621261 | None:intergenic | 30.0% | |
| !! | CTGTAACCTTTGAAACTTAA+AGG | - | chr3_3:72621244-72621263 | Msa0470520:CDS | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr3_3:72621253-72621272 | None:intergenic | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | - | chr3_3:72621275-72621294 | Msa0470520:CDS | 30.0% | |
| GCATAAGATGATAAATGAGT+TGG | + | chr3_3:72621833-72621852 | None:intergenic | 30.0% | |
| ! | AAGAAAAAAGTGTACATGGA+TGG | + | chr3_3:72621985-72622004 | None:intergenic | 30.0% |
| ! | GGAAACATCATAATTTTTCC+CGG | - | chr3_3:72622200-72622219 | Msa0470520:intron | 30.0% |
| TGAAGCGTGAACATAAATGA+CGG | + | chr3_3:72618778-72618797 | None:intergenic | 35.0% | |
| TTAAGTTAAGAGTCCCACAT+CGG | - | chr3_3:72618828-72618847 | Msa0470520:CDS | 35.0% | |
| TTGAAATCTCTTCGAAATGG+TGG | + | chr3_3:72618938-72618957 | None:intergenic | 35.0% | |
| TCTCATAATGCTTCTCTATG+AGG | + | chr3_3:72619116-72619135 | None:intergenic | 35.0% | |
| !! | AGAGAAGCATTATGAGAGAA+TGG | - | chr3_3:72619119-72619138 | Msa0470520:intron | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | + | chr3_3:72619332-72619351 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | + | chr3_3:72619333-72619352 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | - | chr3_3:72619380-72619399 | Msa0470520:intron | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | - | chr3_3:72619441-72619460 | Msa0470520:intron | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | - | chr3_3:72619574-72619593 | Msa0470520:intron | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | - | chr3_3:72619805-72619824 | Msa0470520:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | - | chr3_3:72619806-72619825 | Msa0470520:intron | 35.0% | |
| CAAAAACATACATGCTTTGC+AGG | + | chr3_3:72619867-72619886 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | - | chr3_3:72620032-72620051 | Msa0470520:intron | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | - | chr3_3:72620213-72620232 | Msa0470520:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | + | chr3_3:72620271-72620290 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | + | chr3_3:72620272-72620291 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | - | chr3_3:72620300-72620319 | Msa0470520:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | + | chr3_3:72620309-72620328 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | + | chr3_3:72620565-72620584 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | + | chr3_3:72620582-72620601 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | + | chr3_3:72620604-72620623 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr3_3:72620607-72620626 | Msa0470520:intron | 35.0% | |
| AAAAGTGGTCATCATAGTCA+TGG | + | chr3_3:72620878-72620897 | None:intergenic | 35.0% | |
| CAATGAGGCATAGATAAAAG+TGG | + | chr3_3:72620893-72620912 | None:intergenic | 35.0% | |
| ! | CACTTTTATCTATGCCTCAT+TGG | - | chr3_3:72620891-72620910 | Msa0470520:intron | 35.0% |
| TTGAGTTTGGAAACCTTCAT+TGG | - | chr3_3:72621018-72621037 | Msa0470520:CDS | 35.0% | |
| TGAGTTTGGAAACCTTCATT+GGG | - | chr3_3:72621019-72621038 | Msa0470520:CDS | 35.0% | |
| AAGTGACTTTAACCCAATGA+AGG | + | chr3_3:72621034-72621053 | None:intergenic | 35.0% | |
| TTGGCCAAACAGTTATTACA+AGG | + | chr3_3:72621062-72621081 | None:intergenic | 35.0% | |
| ! | TTTGAAACTTAAAGGACCCA+GGG | + | chr3_3:72621091-72621110 | None:intergenic | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr3_3:72621182-72621201 | None:intergenic | 35.0% |
| GTTTCACGTTTGTAACAGAT+AGG | + | chr3_3:72621271-72621290 | None:intergenic | 35.0% | |
| GAAAAATCACTAATCCACAG+TGG | - | chr3_3:72621370-72621389 | Msa0470520:CDS | 35.0% | |
| ACATGTCATATTATCCACTG+TGG | + | chr3_3:72621387-72621406 | None:intergenic | 35.0% | |
| CTTGTCAATTGTGGTAAGTA+GGG | + | chr3_3:72621574-72621593 | None:intergenic | 35.0% | |
| GACTATCAATAGCACTTGTT+GGG | + | chr3_3:72621623-72621642 | None:intergenic | 35.0% | |
| TGACTATCAATAGCACTTGT+TGG | + | chr3_3:72621624-72621643 | None:intergenic | 35.0% | |
| ! | ACAAGTGCTATTGATAGTCA+TGG | - | chr3_3:72621624-72621643 | Msa0470520:CDS | 35.0% |
| TAGCTATTTGCAGTGAACTA+GGG | + | chr3_3:72621754-72621773 | None:intergenic | 35.0% | |
| ACTGCTTCTTAACTCTAGTA+TGG | - | chr3_3:72621861-72621880 | Msa0470520:intron | 35.0% | |
| CTGCTTCTTAACTCTAGTAT+GGG | - | chr3_3:72621862-72621881 | Msa0470520:intron | 35.0% | |
| !! | GTGTTGATGGCTATATAGTT+TGG | - | chr3_3:72622075-72622094 | Msa0470520:intron | 35.0% |
| ATCATAAACTTTCCTAGTGG+TGG | - | chr3_3:72622161-72622180 | Msa0470520:intron | 35.0% | |
| ! | ATCATAATTTTTCCCGGAAG+TGG | - | chr3_3:72622206-72622225 | Msa0470520:intron | 35.0% |
| GCAAATGTCATAAACTTTCC+CGG | - | chr3_3:72622245-72622264 | Msa0470520:CDS | 35.0% | |
| TGTTGTCAGGTTTCCGTTAT+CGG | - | chr3_3:72618747-72618766 | Msa0470520:CDS | 40.0% | |
| GAAGCGTGAACATAAATGAC+GGG | + | chr3_3:72618777-72618796 | None:intergenic | 40.0% | |
| ATCTCTTCGAAATGGTGGTT+GGG | + | chr3_3:72618933-72618952 | None:intergenic | 40.0% | |
| AATCTCTTCGAAATGGTGGT+TGG | + | chr3_3:72618934-72618953 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | + | chr3_3:72619065-72619084 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | - | chr3_3:72619065-72619084 | Msa0470520:intron | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | + | chr3_3:72619095-72619114 | None:intergenic | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | - | chr3_3:72619346-72619365 | Msa0470520:intron | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | - | chr3_3:72619437-72619456 | Msa0470520:intron | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | - | chr3_3:72619688-72619707 | Msa0470520:intron | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | - | chr3_3:72619704-72619723 | Msa0470520:intron | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | - | chr3_3:72619710-72619729 | Msa0470520:intron | 40.0% | |
| ! | TGATGATGAAGACGATGATG+AGG | - | chr3_3:72619733-72619752 | Msa0470520:intron | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr3_3:72620053-72620072 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | - | chr3_3:72620076-72620095 | Msa0470520:intron | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | - | chr3_3:72620591-72620610 | Msa0470520:intron | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | - | chr3_3:72620634-72620653 | Msa0470520:intron | 40.0% |
| TGGAAGATAGCAATGCACAA+TGG | - | chr3_3:72620965-72620984 | Msa0470520:CDS | 40.0% | |
| !! | CTTTGAAACTTAAAGGACCC+AGG | + | chr3_3:72621092-72621111 | None:intergenic | 40.0% |
| ! | CTGGGTCCTTTAAGTTTCAA+AGG | - | chr3_3:72621090-72621109 | Msa0470520:intron | 40.0% |
| GGTTTCAGATAGGTCCTTAA+CGG | - | chr3_3:72621140-72621159 | Msa0470520:intron | 40.0% | |
| CTTTCTATCAACCTCCGTTA+AGG | + | chr3_3:72621157-72621176 | None:intergenic | 40.0% | |
| !! | CTTAACGGAGGTTGATAGAA+AGG | - | chr3_3:72621155-72621174 | Msa0470520:intron | 40.0% |
| GCTTGTCAATTGTGGTAAGT+AGG | + | chr3_3:72621575-72621594 | None:intergenic | 40.0% | |
| GCCATTGAAAGGTCAAATTG+GGG | + | chr3_3:72621601-72621620 | None:intergenic | 40.0% | |
| GGCCATTGAAAGGTCAAATT+GGG | + | chr3_3:72621602-72621621 | None:intergenic | 40.0% | |
| CTAGCTATTTGCAGTGAACT+AGG | + | chr3_3:72621755-72621774 | None:intergenic | 40.0% | |
| ACAAACTCTAAGTAGGAGCT+AGG | - | chr3_3:72621800-72621819 | Msa0470520:intron | 40.0% | |
| !! | ATTTGTAGTTGGTGAGACAC+AGG | - | chr3_3:72622034-72622053 | Msa0470520:intron | 40.0% |
| AACTTTCCTAGTGGTGGTAA+AGG | - | chr3_3:72622167-72622186 | Msa0470520:intron | 40.0% | |
| ACTTTCCTAGTGGTGGTAAA+GGG | - | chr3_3:72622168-72622187 | Msa0470520:intron | 40.0% | |
| ! | TTTTTCCCGGAAGTGGAAAA+CGG | - | chr3_3:72622213-72622232 | Msa0470520:intron | 40.0% |
| AATGTCATAAACTTTCCCGG+CGG | - | chr3_3:72622248-72622267 | Msa0470520:CDS | 40.0% | |
| AGGCGGAGGAAAAATAAATG+AGG | - | chr3_3:72622283-72622302 | Msa0470520:CDS | 40.0% | |
| GGCGGAGGAAAAATAAATGA+GGG | - | chr3_3:72622284-72622303 | Msa0470520:CDS | 40.0% | |
| TCAGAGCCTCTTCACGATTA+TGG | - | chr3_3:72618718-72618737 | Msa0470520:CDS | 45.0% | |
| CAGAGCCTCTTCACGATTAT+GGG | - | chr3_3:72618719-72618738 | Msa0470520:CDS | 45.0% | |
| !! | GATAACGGAAACCTGACAAC+AGG | + | chr3_3:72618748-72618767 | None:intergenic | 45.0% |
| GTTGTCAGGTTTCCGTTATC+GGG | - | chr3_3:72618748-72618767 | Msa0470520:CDS | 45.0% | |
| ! | TTAAGAGTCCCACATCGGTT+AGG | - | chr3_3:72618833-72618852 | Msa0470520:CDS | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | + | chr3_3:72618909-72618928 | None:intergenic | 45.0% | |
| GAAGAAGTTGAGGAACACCT+TGG | + | chr3_3:72619085-72619104 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | + | chr3_3:72619388-72619407 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | - | chr3_3:72619390-72619409 | Msa0470520:intron | 45.0% | |
| GTCAAAGCACACTCTATTGG+TGG | - | chr3_3:72619416-72619435 | Msa0470520:intron | 45.0% | |
| !! | GACAAAGGTAATGGATGAGG+AGG | - | chr3_3:72619577-72619596 | Msa0470520:intron | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | - | chr3_3:72619610-72619629 | Msa0470520:intron | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | - | chr3_3:72619629-72619648 | Msa0470520:intron | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | - | chr3_3:72619635-72619654 | Msa0470520:intron | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | - | chr3_3:72619638-72619657 | Msa0470520:intron | 45.0% |
| TGACGACGACGGTTATACAA+TGG | - | chr3_3:72619670-72619689 | Msa0470520:intron | 45.0% | |
| CGACGGTTATACAATGGTAG+AGG | - | chr3_3:72619676-72619695 | Msa0470520:intron | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | - | chr3_3:72619739-72619758 | Msa0470520:intron | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | - | chr3_3:72619966-72619985 | Msa0470520:intron | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | + | chr3_3:72620402-72620421 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | - | chr3_3:72620633-72620652 | Msa0470520:intron | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | - | chr3_3:72620638-72620657 | Msa0470520:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | - | chr3_3:72620704-72620723 | Msa0470520:intron | 45.0% | |
| TGCTTAGGGTGCACGTTATT+AGG | - | chr3_3:72620744-72620763 | Msa0470520:intron | 45.0% | |
| TTCAGATAGGTCCTTAACGG+AGG | - | chr3_3:72621143-72621162 | Msa0470520:intron | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr3_3:72621282-72621301 | Msa0470520:CDS | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr3_3:72621283-72621302 | Msa0470520:CDS | 45.0% | |
| GCCCCAATTTGACCTTTCAA+TGG | - | chr3_3:72621597-72621616 | Msa0470520:CDS | 45.0% | |
| GGGCCATTGAAAGGTCAAAT+TGG | + | chr3_3:72621603-72621622 | None:intergenic | 45.0% | |
| GATGGCTATATAGTTTGGCC+AGG | - | chr3_3:72622080-72622099 | Msa0470520:intron | 45.0% | |
| CTTTCCTAGTGGTGGTAAAG+GGG | - | chr3_3:72622169-72622188 | Msa0470520:intron | 45.0% | |
| TTTCCTAGTGGTGGTAAAGG+GGG | - | chr3_3:72622170-72622189 | Msa0470520:intron | 45.0% | |
| ! | TTTTCCCGGAAGTGGAAAAC+GGG | - | chr3_3:72622214-72622233 | Msa0470520:intron | 45.0% |
| !! | AAAAACTTAATAATAATAAT+CGG | + | chr3_3:72619173-72619192 | None:intergenic | 5.0% |
| !!! | AAATAATTTTTTTTTTTTTG+AGG | - | chr3_3:72621495-72621514 | Msa0470520:CDS | 5.0% |
| ATTATGGGCCACCTGTTGTC+AGG | - | chr3_3:72618734-72618753 | Msa0470520:CDS | 50.0% | |
| AACGGAAACCTGACAACAGG+TGG | + | chr3_3:72618745-72618764 | None:intergenic | 50.0% | |
| ! | GCGTGAACATAAATGACGGG+TGG | + | chr3_3:72618774-72618793 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr3_3:72618896-72618915 | Msa0470520:CDS | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr3_3:72618907-72618926 | Msa0470520:CDS | 50.0% |
| CGCGTCAAAGCACACTCTAT+TGG | - | chr3_3:72619413-72619432 | Msa0470520:intron | 50.0% | |
| ! | AAGCACACTCTATTGGTGGC+AGG | - | chr3_3:72619420-72619439 | Msa0470520:intron | 50.0% |
| TTGGAGGATGAGGAAGAGGA+AGG | - | chr3_3:72619614-72619633 | Msa0470520:intron | 50.0% | |
| ! | GGAGATGATGATGACGACGA+CGG | - | chr3_3:72619659-72619678 | Msa0470520:intron | 50.0% |
| CGATGATGAGGATGAGGATG+AGG | - | chr3_3:72619745-72619764 | Msa0470520:intron | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr3_3:72620403-72620422 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr3_3:72620400-72620419 | Msa0470520:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | - | chr3_3:72620637-72620656 | Msa0470520:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | - | chr3_3:72620707-72620726 | Msa0470520:intron | 50.0% | |
| TGTTTGGCCAAATACCTCCC+TGG | - | chr3_3:72621071-72621090 | Msa0470520:intron | 50.0% | |
| GTTTGGCCAAATACCTCCCT+GGG | - | chr3_3:72621072-72621091 | Msa0470520:intron | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr3_3:72621293-72621312 | None:intergenic | 50.0% |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr3_3:72621286-72621305 | None:intergenic | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr3_3:72621286-72621305 | Msa0470520:CDS | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr3_3:72621293-72621312 | Msa0470520:CDS | 50.0% |
| GTTAGGCCAAATACCTCCCT+GGG | + | chr3_3:72621302-72621321 | None:intergenic | 50.0% | |
| AGTTAGGCCAAATACCTCCC+TGG | + | chr3_3:72621303-72621322 | None:intergenic | 50.0% | |
| TGGGGCATGCTTGTCAATTG+TGG | + | chr3_3:72621583-72621602 | None:intergenic | 50.0% | |
| ! | GCACTTGTTGGGCCATTGAA+AGG | + | chr3_3:72621612-72621631 | None:intergenic | 50.0% |
| GGCTATATAGTTTGGCCAGG+CGG | - | chr3_3:72622083-72622102 | Msa0470520:intron | 50.0% | |
| ! | GCAATATGGCAAAGCACCAG+TGG | - | chr3_3:72622110-72622129 | Msa0470520:intron | 50.0% |
| AGCACCAGTGGAAGCTCAAA+TGG | - | chr3_3:72622122-72622141 | Msa0470520:intron | 50.0% | |
| ACCAGTGGAAGCTCAAATGG+AGG | - | chr3_3:72622125-72622144 | Msa0470520:intron | 50.0% | |
| AGTGGAAGCTCAAATGGAGG+CGG | - | chr3_3:72622128-72622147 | Msa0470520:intron | 50.0% | |
| TTTCCCGGAAGTGGAAAACG+GGG | - | chr3_3:72622215-72622234 | Msa0470520:intron | 50.0% | |
| GAGGGACATAAGTCAAGCGT+TGG | - | chr3_3:72622302-72622321 | Msa0470520:CDS | 50.0% | |
| GGTGGCCCATAATCGTGAAG+AGG | + | chr3_3:72618727-72618746 | None:intergenic | 55.0% | |
| !! | AATGACGGGTGGCCCGATAA+CGG | + | chr3_3:72618763-72618782 | None:intergenic | 55.0% |
| ATGTGCAACCCTGAGCGTGA+GGG | - | chr3_3:72618799-72618818 | Msa0470520:CDS | 55.0% | |
| ! | GTCCCACATCGGTTAGGAGT+TGG | - | chr3_3:72618839-72618858 | Msa0470520:CDS | 55.0% |
| GGCCAACTCCTAACCGATGT+GGG | + | chr3_3:72618844-72618863 | None:intergenic | 55.0% | |
| AGGCCAACTCCTAACCGATG+TGG | + | chr3_3:72618845-72618864 | None:intergenic | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | - | chr3_3:72618887-72618906 | Msa0470520:CDS | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr3_3:72618895-72618914 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr3_3:72618895-72618914 | Msa0470520:CDS | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr3_3:72618897-72618916 | Msa0470520:CDS | 55.0% |
| GAGGAACACCTTGGCAGTGT+TGG | + | chr3_3:72619076-72619095 | None:intergenic | 55.0% | |
| GCCTCCATTTGAGCTTCCAC+TGG | + | chr3_3:72622129-72622148 | None:intergenic | 55.0% | |
| ! | ACCACCCCGTTTTCCACTTC+CGG | + | chr3_3:72622222-72622241 | None:intergenic | 55.0% |
| GTCATAAACTTTCCCGGCGG+TGG | - | chr3_3:72622251-72622270 | Msa0470520:CDS | 55.0% | |
| AACTTTCCCGGCGGTGGAAA+CGG | - | chr3_3:72622257-72622276 | Msa0470520:CDS | 55.0% | |
| GATGTGCAACCCTGAGCGTG+AGG | - | chr3_3:72618798-72618817 | Msa0470520:CDS | 60.0% | |
| TGTGCAACCCTGAGCGTGAG+GGG | - | chr3_3:72618800-72618819 | Msa0470520:CDS | 60.0% | |
| AACACACCCCCTCACGCTCA+GGG | + | chr3_3:72618810-72618829 | None:intergenic | 60.0% | |
| TAACACACCCCCTCACGCTC+AGG | + | chr3_3:72618811-72618830 | None:intergenic | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr3_3:72618900-72618919 | None:intergenic | 60.0% |
| TGCCATATTGCGTGTCCGCC+TGG | + | chr3_3:72622101-72622120 | None:intergenic | 60.0% | |
| GGAAGCTCAAATGGAGGCGG+TGG | - | chr3_3:72622131-72622150 | Msa0470520:intron | 60.0% | |
| AGCTCAAATGGAGGCGGTGG+TGG | - | chr3_3:72622134-72622153 | Msa0470520:intron | 60.0% | |
| CCACCCCCTTTACCACCACT+AGG | + | chr3_3:72622176-72622195 | None:intergenic | 60.0% | |
| CCTAGTGGTGGTAAAGGGGG+TGG | - | chr3_3:72622173-72622192 | Msa0470520:intron | 60.0% | |
| AGTGGTGGTAAAGGGGGTGG+AGG | - | chr3_3:72622176-72622195 | Msa0470520:intron | 60.0% | |
| ! | CCACCCCGTTTTCCACTTCC+GGG | + | chr3_3:72622221-72622240 | None:intergenic | 60.0% |
| ACTTTCCCGGCGGTGGAAAC+GGG | - | chr3_3:72622258-72622277 | Msa0470520:CDS | 60.0% | |
| GTGCAACCCTGAGCGTGAGG+GGG | - | chr3_3:72618801-72618820 | Msa0470520:CDS | 65.0% | |
| GGCCAGGCGGACACGCAATA+TGG | - | chr3_3:72622096-72622115 | Msa0470520:intron | 65.0% | |
| GGTGGTAAAGGGGGTGGAGG+TGG | - | chr3_3:72622179-72622198 | Msa0470520:intron | 65.0% | |
| CCCGGAAGTGGAAAACGGGG+TGG | - | chr3_3:72622218-72622237 | Msa0470520:intron | 65.0% | |
| CTTTCCCGGCGGTGGAAACG+GGG | - | chr3_3:72622259-72622278 | Msa0470520:CDS | 65.0% | |
| TTTCCCGGCGGTGGAAACGG+GGG | - | chr3_3:72622260-72622279 | Msa0470520:CDS | 65.0% | |
| CCTCCCCCGTTTCCACCGCC+GGG | + | chr3_3:72622266-72622285 | None:intergenic | 75.0% | |
| GCCTCCCCCGTTTCCACCGC+CGG | + | chr3_3:72622267-72622286 | None:intergenic | 75.0% | |
| GGCGGTGGAAACGGGGGAGG+CGG | - | chr3_3:72622266-72622285 | Msa0470520:CDS | 75.0% | |
| GGTGGAAACGGGGGAGGCGG+AGG | - | chr3_3:72622269-72622288 | Msa0470520:CDS | 75.0% | |
| ! | CCCGGCGGTGGAAACGGGGG+AGG | - | chr3_3:72622263-72622282 | Msa0470520:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72618712 | 72622346 | 72618712 | ID=Msa0470520;Name=Msa0470520 |
| chr3_3 | mRNA | 72618712 | 72622346 | 72618712 | ID=Msa0470520-mRNA-1;Parent=Msa0470520;Name=Msa0470520-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.83|1|1|6|0|441 |
| chr3_3 | exon | 72622244 | 72622346 | 72622244 | ID=Msa0470520-mRNA-1:exon:18240;Parent=Msa0470520-mRNA-1 |
| chr3_3 | exon | 72621183 | 72621734 | 72621183 | ID=Msa0470520-mRNA-1:exon:18239;Parent=Msa0470520-mRNA-1 |
| chr3_3 | exon | 72620961 | 72621079 | 72620961 | ID=Msa0470520-mRNA-1:exon:18238;Parent=Msa0470520-mRNA-1 |
| chr3_3 | exon | 72620637 | 72620714 | 72620637 | ID=Msa0470520-mRNA-1:exon:18237;Parent=Msa0470520-mRNA-1 |
| chr3_3 | exon | 72620353 | 72620521 | 72620353 | ID=Msa0470520-mRNA-1:exon:18236;Parent=Msa0470520-mRNA-1 |
| chr3_3 | exon | 72618712 | 72619016 | 72618712 | ID=Msa0470520-mRNA-1:exon:18235;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72622244 | 72622346 | 72622244 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72621183 | 72621734 | 72621183 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72620961 | 72621079 | 72620961 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72620637 | 72620714 | 72620637 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72620353 | 72620521 | 72620353 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| chr3_3 | CDS | 72618712 | 72619016 | 72618712 | ID=Msa0470520-mRNA-1:cds;Parent=Msa0470520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
