AlfalfaGEDB | Msa0470620

M. sativa cultivar zhongmu-4 / Msa0470620

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470620	AIT11843.1	99.448	181	1	0	1	181	1	181	6.15e-128	367

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470620	sp\|Q0HA25\|MADS9_VITVI	72.881	177	46	2	1	176	1	176	5.82e-91	267

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470620	A0A097EU04	99.448	181	1	0	1	181	1	181	2.94e-128	367

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TFs/TRs:

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Gene ID	Type	Classification
Msa0470620	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470620	MtrunA17_Chr3g0125241	98.895	181	2	0	1	181	26	206	9.35e-132	367
Msa0470620	MtrunA17_Chr1g0159661	73.889	180	42	2	1	180	1	175	9.34e-93	268
Msa0470620	MtrunA17_Chr3g0142191	46.479	142	76	0	1	142	1	142	2.58e-44	146
Msa0470620	MtrunA17_Chr5g0404951	47.945	146	72	2	1	142	1	146	3.40e-41	138
Msa0470620	MtrunA17_Chr8g0351051	46.259	147	72	2	1	142	1	145	3.94e-38	131
Msa0470620	MtrunA17_Chr1g0164791	37.356	174	95	3	1	161	1	173	2.49e-35	123
Msa0470620	MtrunA17_Chr2g0284911	44.898	147	74	3	1	142	16	160	4.11e-35	124
Msa0470620	MtrunA17_Chr3g0077501	44.218	147	75	2	1	142	1	145	5.99e-35	122
Msa0470620	MtrunA17_Chr7g0220121	40.719	167	91	3	1	160	1	166	7.49e-35	123
Msa0470620	MtrunA17_Chr4g0061691	45.578	147	74	2	1	142	1	146	8.03e-35	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470620	AT5G20240.1	63.473	167	61	0	1	167	1	167	1.02e-73	221
Msa0470620	AT5G20240.2	67.133	143	47	0	1	143	1	143	4.77e-68	204
Msa0470620	AT3G54340.1	47.143	140	74	0	1	140	1	140	6.88e-41	138
Msa0470620	AT5G23260.1	39.766	171	100	2	1	169	17	186	4.27e-38	132
Msa0470620	AT5G23260.2	39.429	175	100	2	1	169	1	175	1.17e-37	130
Msa0470620	AT5G23260.4	39.429	175	100	2	1	169	17	191	1.73e-37	130
Msa0470620	AT2G42830.1	44.898	147	74	2	1	142	16	160	1.13e-36	127
Msa0470620	AT2G42830.2	44.898	147	74	2	1	142	16	160	1.20e-36	127
Msa0470620	AT3G58780.1	44.218	147	75	2	1	142	16	160	2.08e-36	127
Msa0470620	AT5G23260.3	39.181	171	92	2	1	169	1	161	2.54e-36	126

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Find 43 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGATACCAGAGAGCCTCT+GGG	0.613351	3_3:+72758097	Msa0470620:CDS
ACAGCATGCAAATTGACCTC+AGG	0.580242	3_3:+72758651	Msa0470620:CDS
ACTTATTCAAAGAGAAAGAA+TGG	0.449287	3_3:+72757851	Msa0470620:CDS
AGAAGCACCAAAGAGAATAA+GGG	0.502470	3_3:-72757924	None:intergenic
AGCCTCTGGGAAAACCCTAT+GGG	0.575896	3_3:+72758110	Msa0470620:CDS
ATAAGTGCTTACGTGGTGGA+AGG	0.543600	3_3:-72757971	None:intergenic
ATTAATTTCAGGCACTTGAA+GGG	0.550773	3_3:+72758755	Msa0470620:intron
CAAAGAGCTGATGTCCCTTG+AGG	0.627732	3_3:+72758802	Msa0470620:CDS
CAACAGCATATGGCACTTGA+AGG	0.504524	3_3:+72759922	Msa0470620:CDS
CAAGTTTCCCTTATTCTCTT+TGG	0.200754	3_3:+72757917	Msa0470620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATATATAAGTGCTTACG+TGG	-	chr3_3:72757981-72758000	None:intergenic	30.0%
TCTCAATATATGAACAGATC+TGG	+	chr3_3:72758347-72758366	Msa0470620:intron	30.0%
TATTAATTTCAGGCACTTGA+AGG	+	chr3_3:72758754-72758773	Msa0470620:intron	30.0%
ATTAATTTCAGGCACTTGAA+GGG	+	chr3_3:72758755-72758774	Msa0470620:intron	30.0%
TCATGAGCCTATATATATCA+GGG	-	chr3_3:72759395-72759414	None:intergenic	30.0%
ATCATGAGCCTATATATATC+AGG	-	chr3_3:72759396-72759415	None:intergenic	30.0%
TGATATATATAGGCTCATGA+TGG	+	chr3_3:72759395-72759414	Msa0470620:intron	30.0%
AACATATATAAGTGCTTACG+TGG	-	chr3_3:72757981-72758000	None:intergenic	30.0%
TCTCAATATATGAACAGATC+TGG	+	chr3_3:72758347-72758366	Msa0470620:intron	30.0%
TATTAATTTCAGGCACTTGA+AGG	+	chr3_3:72758754-72758773	Msa0470620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	72757794	72759975	72757794	ID=Msa0470620;Name=Msa0470620
chr3_3	mRNA	72757794	72759975	72757794	ID=Msa0470620-mRNA-1;Parent=Msa0470620;Name=Msa0470620-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|0.85\|1\|1\|7\|0\|181
chr3_3	exon	72757794	72757981	72757794	ID=Msa0470620-mRNA-1:exon:18284;Parent=Msa0470620-mRNA-1
chr3_3	exon	72758080	72758146	72758080	ID=Msa0470620-mRNA-1:exon:18285;Parent=Msa0470620-mRNA-1
chr3_3	exon	72758611	72758672	72758611	ID=Msa0470620-mRNA-1:exon:18286;Parent=Msa0470620-mRNA-1
chr3_3	exon	72758766	72758865	72758766	ID=Msa0470620-mRNA-1:exon:18287;Parent=Msa0470620-mRNA-1
chr3_3	exon	72758989	72759018	72758989	ID=Msa0470620-mRNA-1:exon:18288;Parent=Msa0470620-mRNA-1
chr3_3	exon	72759256	72759300	72759256	ID=Msa0470620-mRNA-1:exon:18289;Parent=Msa0470620-mRNA-1
chr3_3	exon	72759922	72759975	72759922	ID=Msa0470620-mRNA-1:exon:18290;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72757794	72757981	72757794	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72758080	72758146	72758080	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72758611	72758672	72758611	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72758766	72758865	72758766	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72758989	72759018	72758989	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72759256	72759300	72759256	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3	CDS	72759922	72759975	72759922	ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1

Gene Sequence

>Msa0470620

ATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGAATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTTTGTGATGCTCAAGTTTCCCTTATTCTCTTTGGTGCTTCTGGTAAGATGCATGAATACATCAGCCCTTCCACCACGTTGATTGATATTCTGGACAGATACCAGAGAGCCTCTGGGAAAACCCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGACAGCATGCAAATTGACCTCAGGCACTTGAAGGGAGAGGACATTACCTCACTGAATTACAAAGAGCTGATGTCCCTTGAGGAATCCCTTGAAAATGGTCTTACTGGTGTCCGTGAGAAAAAGATGGAAGTGCATAGGATGTTCAAGAGAAATGGAAAGATCTTGGAGGATGAAAATAAGGAACTCAATTTTCTTCTGCAACAGCATATGGCACTTGAAGGTGTGGGAAACATGCATGGACAATGGATTTAA

Protein sequence

>Msa0470620

MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIDLRHLKGEDITSLNYKELMSLEESLENGLTGVREKKMEVHRMFKRNGKILEDENKELNFLLQQHMALEGVGNMHGQWI*