AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470620 MtrunA17_Chr3g0125241 98.895 181 2 0 1 181 26 206 9.35e-132 367
Msa0470620 MtrunA17_Chr1g0159661 73.889 180 42 2 1 180 1 175 9.34e-93 268
Msa0470620 MtrunA17_Chr3g0142191 46.479 142 76 0 1 142 1 142 2.58e-44 146
Msa0470620 MtrunA17_Chr5g0404951 47.945 146 72 2 1 142 1 146 3.40e-41 138
Msa0470620 MtrunA17_Chr8g0351051 46.259 147 72 2 1 142 1 145 3.94e-38 131
Msa0470620 MtrunA17_Chr1g0164791 37.356 174 95 3 1 161 1 173 2.49e-35 123
Msa0470620 MtrunA17_Chr2g0284911 44.898 147 74 3 1 142 16 160 4.11e-35 124
Msa0470620 MtrunA17_Chr3g0077501 44.218 147 75 2 1 142 1 145 5.99e-35 122
Msa0470620 MtrunA17_Chr7g0220121 40.719 167 91 3 1 160 1 166 7.49e-35 123
Msa0470620 MtrunA17_Chr4g0061691 45.578 147 74 2 1 142 1 146 8.03e-35 122
Msa0470620 MtrunA17_Chr3g0097101 44.218 147 75 2 1 142 16 160 1.06e-34 122
Msa0470620 MtrunA17_Chr8g0366231 46.939 147 72 3 1 142 1 146 1.19e-34 122
Msa0470620 MtrunA17_Chr5g0420081 45.578 147 74 3 1 142 1 146 4.38e-34 120
Msa0470620 MtrunA17_Chr7g0220111 44.521 146 76 2 1 142 1 145 6.22e-34 120
Msa0470620 MtrunA17_Chr6g0455511 45.205 146 75 2 1 142 1 145 6.79e-34 120
Msa0470620 MtrunA17_Chr6g0474371 41.781 146 78 2 1 140 1 145 4.11e-33 116
Msa0470620 MtrunA17_Chr8g0380021 41.497 147 79 2 1 142 17 161 8.94e-33 117
Msa0470620 MtrunA17_Chr2g0279821 41.420 169 89 4 1 161 1 167 9.32e-33 117
Msa0470620 MtrunA17_Chr4g0061671 43.056 144 78 2 1 141 1 143 1.04e-32 115
Msa0470620 MtrunA17_Chr5g0411691 38.674 181 98 4 1 170 1 179 3.20e-32 115
Msa0470620 MtrunA17_Chr8g0351031 37.634 186 101 5 1 179 1 178 6.57e-32 114
Msa0470620 MtrunA17_Chr3g0122251 39.326 178 95 5 1 168 1 175 1.20e-31 114
Msa0470620 MtrunA17_Chr5g0420091 39.726 146 82 2 1 141 1 145 8.39e-31 111
Msa0470620 MtrunA17_Chr7g0246431 39.597 149 83 3 1 144 1 147 1.39e-30 110
Msa0470620 MtrunA17_Chr5g0412271 44.509 173 77 7 1 160 1 167 1.49e-30 111
Msa0470620 MtrunA17_Chr5g0412461 38.624 189 97 5 1 178 1 181 1.86e-30 110
Msa0470620 MtrunA17_Chr8g0351041 41.060 151 79 4 1 144 1 148 2.82e-30 108
Msa0470620 MtrunA17_Chr5g0427401 41.081 185 88 8 1 174 1 175 3.09e-30 110
Msa0470620 MtrunA17_Chr4g0057151 40.588 170 88 5 1 160 1 167 3.38e-30 109
Msa0470620 MtrunA17_Chr4g0049541 37.853 177 84 7 1 161 1 167 5.96e-29 107
Msa0470620 MtrunA17_Chr1g0204111 40.136 147 80 3 1 141 17 161 7.01e-28 104
Msa0470620 MtrunA17_Chr4g0018421 37.162 148 86 2 1 142 1 147 3.03e-27 102
Msa0470620 MtrunA17_Chr4g0020221 41.611 149 78 3 1 142 1 147 1.35e-25 99.0
Msa0470620 MtrunA17_Chr1g0173161 63.235 68 22 1 1 68 1 65 1.03e-24 92.0
Msa0470620 MtrunA17_Chr7g0246381 61.290 62 24 0 1 62 1 62 5.36e-24 89.7
Msa0470620 MtrunA17_Chr4g0049901 38.922 167 90 4 1 160 27 188 7.73e-24 94.0
Msa0470620 MtrunA17_Chr2g0308251 59.701 67 27 0 1 67 1 67 3.97e-23 87.8
Msa0470620 MtrunA17_Chr5g0427921 56.667 60 26 0 1 60 1 60 4.20e-23 87.0
Msa0470620 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 6.88e-23 87.8
Msa0470620 MtrunA17_Chr4g0044071 59.649 57 23 0 1 57 1 57 2.38e-20 81.6
Msa0470620 MtrunA17_Chr5g0425191 57.895 57 24 0 1 57 1 57 5.89e-20 80.1
Msa0470620 MtrunA17_Chr3g0134451 54.930 71 31 1 1 71 1 70 8.69e-19 82.0
Msa0470620 MtrunA17_Chr8g0379021 45.714 70 36 1 2 71 12 79 3.85e-17 75.1
Msa0470620 MtrunA17_Chr5g0417661 58.491 53 22 0 1 53 56 108 1.31e-16 72.4
Msa0470620 MtrunA17_Chr4g0060841 62.264 53 20 0 1 53 1 53 1.54e-16 75.9
Msa0470620 MtrunA17_Chr1g0208561 47.143 70 35 1 2 71 9 76 1.73e-16 74.3
Msa0470620 MtrunA17_Chr1g0208581 48.571 70 34 1 2 71 9 76 1.78e-16 74.3
Msa0470620 MtrunA17_Chr3g0089141 47.143 70 35 1 2 71 9 76 1.91e-16 74.3
Msa0470620 MtrunA17_Chr2g0333981 44.615 65 36 0 1 65 11 75 2.93e-16 72.8
Msa0470620 MtrunA17_Chr3g0099421 50.000 70 33 1 2 71 34 101 1.05e-15 72.8
Msa0470620 MtrunA17_Chr2g0325971 45.714 70 36 1 2 71 9 76 1.64e-15 71.6
Msa0470620 MtrunA17_Chr1g0206701 31.250 144 67 6 2 137 9 128 2.36e-15 71.2
Msa0470620 MtrunA17_Chr4g0052081 53.333 60 28 0 1 60 1 60 2.93e-15 70.1
Msa0470620 MtrunA17_Chr1g0187361 45.714 70 36 1 2 71 9 76 3.38e-15 70.9
Msa0470620 MtrunA17_Chr1g0188671 47.143 70 35 1 2 71 47 114 4.86e-15 71.2
Msa0470620 MtrunA17_Chr5g0419601 45.070 71 37 1 1 71 8 76 4.89e-15 70.5
Msa0470620 MtrunA17_Chr2g0317481 45.714 70 36 1 2 71 9 76 5.20e-15 70.5
Msa0470620 MtrunA17_Chr2g0317451 45.714 70 36 1 2 71 9 76 5.20e-15 70.5
Msa0470620 MtrunA17_Chr1g0166611 55.319 47 21 0 13 59 17 63 7.22e-15 67.8
Msa0470620 MtrunA17_Chr2g0292791 45.714 70 36 1 2 71 9 76 7.52e-15 70.1
Msa0470620 MtrunA17_Chr8g0355091 46.479 71 34 2 2 71 9 76 8.95e-15 69.7
Msa0470620 MtrunA17_Chr5g0422941 35.455 110 62 2 2 104 9 116 1.03e-14 69.7
Msa0470620 MtrunA17_Chr4g0052061 32.117 137 82 4 1 130 1 133 1.25e-14 67.8
Msa0470620 MtrunA17_Chr3g0099411 44.286 70 37 1 2 71 9 76 1.32e-14 68.9
Msa0470620 MtrunA17_Chr1g0206721 44.286 70 37 1 2 71 9 76 1.72e-14 68.9
Msa0470620 MtrunA17_Chr8g0376821 40.000 65 39 0 1 65 1 65 2.03e-14 67.8
Msa0470620 MtrunA17_Chr1g0149391 48.485 66 33 1 2 66 9 74 2.49e-14 68.6
Msa0470620 MtrunA17_Chr1g0175611 40.000 65 39 0 1 65 1 65 4.18e-14 66.6
Msa0470620 MtrunA17_Chr1g0169761 40.000 65 39 0 1 65 1 65 5.31e-14 66.6
Msa0470620 MtrunA17_Chr1g0206991 42.857 70 38 1 2 71 9 76 6.87e-14 66.6
Msa0470620 MtrunA17_Chr5g0422421 48.485 66 33 1 2 66 9 74 1.10e-13 67.0
Msa0470620 MtrunA17_Chr1g0175601 40.000 65 39 0 1 65 1 65 1.13e-13 65.9
Msa0470620 MtrunA17_Chr1g0180591 30.345 145 71 5 1 121 1 139 1.28e-13 65.5
Msa0470620 MtrunA17_Chr8g0357771 41.935 62 36 0 1 62 1 62 1.36e-13 65.5
Msa0470620 MtrunA17_Chr2g0300421 46.667 60 32 0 2 61 9 68 4.46e-13 64.3
Msa0470620 MtrunA17_Chr4g0074101 36.923 65 41 0 1 65 1 65 6.02e-13 64.3
Msa0470620 MtrunA17_Chr2g0300441 31.783 129 67 4 2 111 7 133 7.62e-13 64.7
Msa0470620 MtrunA17_Chr6g0449851 46.774 62 33 0 1 62 1 62 8.33e-13 65.1
Msa0470620 MtrunA17_Chr6g0457851 26.797 153 94 4 1 138 11 160 1.22e-12 65.1
Msa0470620 MtrunA17_Chr3g0089151 41.429 70 39 1 2 71 9 76 1.65e-12 61.6
Msa0470620 MtrunA17_Chr8g0356071 40.000 65 39 0 1 65 1 65 2.03e-12 62.0
Msa0470620 MtrunA17_Chr4g0018951 48.077 52 27 0 14 65 24 75 2.10e-12 62.4
Msa0470620 MtrunA17_Chr3g0119901 38.028 71 42 1 1 71 8 76 2.21e-12 62.8
Msa0470620 MtrunA17_Chr3g0111841 45.000 60 33 0 8 67 2 61 4.04e-12 58.9
Msa0470620 MtrunA17_Chr3g0085241 38.028 71 42 1 1 71 40 108 4.79e-12 62.4
Msa0470620 MtrunA17_Chr1g0187351 38.028 71 42 1 11 81 1 69 1.07e-11 57.8
Msa0470620 MtrunA17_Chr1g0212151 27.922 154 93 4 1 139 1 151 1.20e-11 62.0
Msa0470620 MtrunA17_Chr2g0283941 38.806 67 41 0 5 71 5 71 3.48e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470620 AT5G20240.1 63.473 167 61 0 1 167 1 167 1.02e-73 221
Msa0470620 AT5G20240.2 67.133 143 47 0 1 143 1 143 4.77e-68 204
Msa0470620 AT3G54340.1 47.143 140 74 0 1 140 1 140 6.88e-41 138
Msa0470620 AT5G23260.1 39.766 171 100 2 1 169 17 186 4.27e-38 132
Msa0470620 AT5G23260.2 39.429 175 100 2 1 169 1 175 1.17e-37 130
Msa0470620 AT5G23260.4 39.429 175 100 2 1 169 17 191 1.73e-37 130
Msa0470620 AT2G42830.1 44.898 147 74 2 1 142 16 160 1.13e-36 127
Msa0470620 AT2G42830.2 44.898 147 74 2 1 142 16 160 1.20e-36 127
Msa0470620 AT3G58780.1 44.218 147 75 2 1 142 16 160 2.08e-36 127
Msa0470620 AT5G23260.3 39.181 171 92 2 1 169 1 161 2.54e-36 126
Msa0470620 AT3G58780.5 44.218 147 75 2 1 142 22 166 2.57e-36 127
Msa0470620 AT3G58780.4 44.138 145 74 2 1 140 16 158 6.63e-36 126
Msa0470620 AT3G58780.2 43.537 147 69 2 1 142 16 153 2.30e-35 124
Msa0470620 AT2G45650.1 44.521 146 75 2 1 142 1 144 9.01e-35 123
Msa0470620 AT5G15800.1 47.260 146 71 3 1 141 1 145 2.41e-34 122
Msa0470620 AT5G15800.2 47.260 146 71 3 1 141 1 145 2.66e-34 122
Msa0470620 AT3G57230.1 38.144 194 99 6 1 178 1 189 3.12e-34 121
Msa0470620 AT3G57230.4 38.144 194 99 6 1 178 1 189 3.12e-34 121
Msa0470620 AT3G02310.2 48.227 141 67 3 1 136 1 140 5.78e-34 119
Msa0470620 AT1G24260.1 43.537 147 67 3 1 136 1 142 7.32e-34 120
Msa0470620 AT1G24260.3 43.243 148 67 3 1 136 1 143 8.58e-34 120
Msa0470620 AT1G24260.2 43.243 148 67 3 1 136 1 143 1.16e-33 120
Msa0470620 AT5G13790.2 47.887 142 67 3 1 139 1 138 1.28e-33 120
Msa0470620 AT3G02310.1 43.678 174 88 5 1 165 1 173 1.42e-33 119
Msa0470620 AT5G13790.1 47.482 139 69 2 1 139 1 135 1.72e-33 120
Msa0470620 AT4G09960.6 42.177 147 78 2 1 142 2 146 1.77e-33 119
Msa0470620 AT4G09960.1 42.177 147 78 2 1 142 1 145 1.98e-33 119
Msa0470620 AT4G09960.5 42.177 147 78 2 1 142 11 155 2.32e-33 119
Msa0470620 AT1G26310.1 45.205 146 72 3 1 139 1 145 2.33e-33 119
Msa0470620 AT3G58780.3 38.824 170 76 2 1 142 16 185 2.74e-33 119
Msa0470620 AT4G09960.3 42.177 147 78 2 1 142 27 171 3.50e-33 119
Msa0470620 AT4G24540.1 45.562 169 81 5 1 160 1 167 3.97e-33 117
Msa0470620 AT4G09960.2 42.361 144 76 2 1 139 1 142 4.41e-33 117
Msa0470620 AT1G69120.2 44.444 144 74 3 1 139 1 143 5.80e-33 117
Msa0470620 AT3G30260.1 43.448 145 74 3 1 139 1 143 6.71e-33 118
Msa0470620 AT5G60910.1 42.604 169 87 4 1 160 1 168 7.04e-33 117
Msa0470620 AT2G45660.2 40.940 149 81 2 1 144 1 147 1.07e-32 115
Msa0470620 AT2G45660.1 39.412 170 92 3 1 161 1 168 1.13e-32 116
Msa0470620 AT1G69120.1 44.444 144 74 3 1 139 1 143 1.20e-32 117
Msa0470620 AT3G57230.2 41.497 147 74 3 1 140 1 142 2.07e-32 114
Msa0470620 AT3G61120.1 44.218 147 73 3 1 142 1 143 2.32e-32 116
Msa0470620 AT3G57390.3 37.234 188 102 4 1 175 1 185 2.37e-32 116
Msa0470620 AT4G09960.4 39.181 171 89 3 1 166 96 256 2.66e-32 118
Msa0470620 AT2G14210.1 41.618 173 82 5 1 160 1 167 2.96e-32 116
Msa0470620 AT2G14210.2 41.618 173 82 5 1 160 1 167 3.56e-32 115
Msa0470620 AT3G57390.1 37.234 188 102 4 1 175 1 185 4.36e-32 116
Msa0470620 AT4G18960.1 43.151 146 76 2 2 142 18 161 1.04e-31 115
Msa0470620 AT5G51870.4 38.202 178 88 4 1 159 1 175 1.22e-31 114
Msa0470620 AT5G51870.1 40.761 184 93 6 1 177 1 175 1.29e-31 113
Msa0470620 AT5G51870.2 42.568 148 75 3 1 141 1 145 1.40e-31 112
Msa0470620 AT5G51870.3 38.202 178 88 4 1 159 11 185 1.81e-31 114
Msa0470620 AT5G51870.5 42.568 148 75 3 1 141 24 168 2.83e-31 112
Msa0470620 AT2G03710.3 39.189 148 76 2 1 139 1 143 2.83e-30 109
Msa0470620 AT2G03710.2 39.161 143 83 2 1 139 1 143 1.76e-29 109
Msa0470620 AT2G03710.1 39.161 143 83 2 1 139 1 143 1.84e-29 109
Msa0470620 AT4G22950.2 40.541 148 82 2 1 144 1 146 3.07e-29 106
Msa0470620 AT4G37940.3 36.943 157 79 3 1 146 1 148 7.37e-29 105
Msa0470620 AT4G22950.3 40.541 148 82 2 1 144 1 146 1.25e-28 106
Msa0470620 AT4G22950.1 40.541 148 82 2 1 144 1 146 1.25e-28 106
Msa0470620 AT4G37940.4 38.000 150 73 3 1 139 1 141 2.37e-28 105
Msa0470620 AT2G22540.3 40.000 170 89 4 1 160 1 167 2.81e-28 105
Msa0470620 AT2G22540.1 40.000 170 89 4 1 160 1 167 2.81e-28 105
Msa0470620 AT4G37940.1 38.000 150 73 3 1 139 1 141 2.83e-28 105
Msa0470620 AT4G11880.2 39.865 148 84 2 1 144 1 147 3.65e-28 103
Msa0470620 AT4G11880.3 39.865 148 84 2 1 144 1 147 3.65e-28 103
Msa0470620 AT5G62165.17 38.710 155 76 5 1 144 1 147 4.54e-28 103
Msa0470620 AT5G62165.12 38.710 155 76 5 1 144 1 147 4.54e-28 103
Msa0470620 AT5G62165.11 38.710 155 76 5 1 144 1 147 4.54e-28 103
Msa0470620 AT5G62165.6 39.216 153 74 5 1 142 1 145 5.33e-28 102
Msa0470620 AT5G62165.9 39.216 153 74 5 1 142 1 145 5.33e-28 102
Msa0470620 AT5G62165.7 39.216 153 74 5 1 142 1 145 5.33e-28 102
Msa0470620 AT5G62165.8 39.216 153 74 5 1 142 1 145 5.33e-28 102
Msa0470620 AT5G62165.13 39.216 153 74 5 1 142 1 145 5.33e-28 102
Msa0470620 AT5G10140.2 40.816 147 73 3 1 142 1 138 8.00e-28 102
Msa0470620 AT4G11880.4 39.865 148 84 2 1 144 1 147 9.06e-28 103
Msa0470620 AT4G11880.1 39.865 148 84 2 1 144 1 147 9.06e-28 103
Msa0470620 AT5G10140.3 40.816 147 73 3 1 142 1 138 1.65e-27 102
Msa0470620 AT5G10140.4 40.816 147 73 3 1 142 1 138 1.74e-27 102
Msa0470620 AT5G10140.1 40.816 147 73 3 1 142 1 138 2.19e-27 102
Msa0470620 AT5G62165.3 38.012 171 84 6 1 160 1 160 2.84e-27 102
Msa0470620 AT5G62165.1 38.012 171 84 6 1 160 1 160 2.84e-27 102
Msa0470620 AT5G62165.2 38.012 171 84 6 1 160 1 160 2.84e-27 102
Msa0470620 AT5G62165.10 40.000 150 71 5 1 139 1 142 1.31e-26 100
Msa0470620 AT5G62165.4 40.000 150 71 5 1 139 1 142 1.31e-26 100
Msa0470620 AT2G22630.1 36.601 153 77 3 1 142 1 144 2.77e-26 100
Msa0470620 AT2G22630.2 36.601 153 77 3 1 142 1 144 2.77e-26 100
Msa0470620 AT2G22540.2 38.235 170 87 4 1 160 1 162 3.90e-25 97.8
Msa0470620 AT5G51860.1 34.132 167 92 3 1 161 1 155 9.79e-24 93.6
Msa0470620 AT5G51860.2 34.337 166 91 3 1 160 1 154 1.02e-23 93.2
Msa0470620 AT5G65070.1 34.545 165 100 4 1 161 1 161 2.42e-23 92.0
Msa0470620 AT5G62165.14 54.795 73 31 1 1 73 1 71 5.50e-23 88.6
Msa0470620 AT1G31140.2 37.333 150 84 3 1 142 1 148 6.55e-23 91.3
Msa0470620 AT5G65060.3 34.146 164 100 3 1 160 1 160 9.84e-23 90.1
Msa0470620 AT1G31140.1 34.932 146 91 2 1 142 1 146 1.46e-22 90.5
Msa0470620 AT5G65060.1 33.951 162 99 3 1 158 1 158 1.48e-22 90.1
Msa0470620 AT1G71692.1 35.714 154 86 3 1 142 1 153 3.76e-22 89.4
Msa0470620 AT5G65070.4 35.000 140 87 2 1 140 1 136 7.93e-22 86.7
Msa0470620 AT5G65050.2 32.317 164 103 3 1 160 1 160 1.45e-21 87.0
Msa0470620 AT5G65050.3 32.317 164 103 3 1 160 1 160 2.02e-21 87.0
Msa0470620 AT5G65050.1 34.507 142 89 2 1 142 1 138 5.65e-21 85.5
Msa0470620 AT5G65050.5 34.146 164 89 6 1 160 1 149 6.44e-21 85.5
Msa0470620 AT5G65070.2 48.611 72 36 1 1 72 1 71 5.11e-20 84.0
Msa0470620 AT5G65070.5 48.611 72 36 1 1 72 1 71 6.24e-20 83.6
Msa0470620 AT5G65060.2 34.146 164 89 5 1 160 1 149 6.78e-20 82.8
Msa0470620 AT5G65080.3 34.014 147 83 5 1 142 8 145 1.45e-19 82.0
Msa0470620 AT1G77080.11 35.976 164 97 3 1 160 1 160 2.33e-19 81.3
Msa0470620 AT5G65070.3 29.082 196 101 3 1 161 1 193 2.35e-19 82.4
Msa0470620 AT1G77980.1 52.113 71 33 1 1 71 1 70 2.49e-19 84.0
Msa0470620 AT1G22130.1 52.113 71 33 1 1 71 1 70 3.30e-19 83.6
Msa0470620 AT1G77080.5 35.976 164 97 3 1 160 1 160 3.58e-19 80.5
Msa0470620 AT1G77080.4 35.976 164 97 3 1 160 1 160 5.10e-19 80.9
Msa0470620 AT1G18750.1 33.793 145 83 2 1 144 1 133 1.47e-18 82.4
Msa0470620 AT1G18750.4 33.793 145 83 2 1 144 1 133 1.76e-18 82.0
Msa0470620 AT5G65080.2 32.000 150 81 3 1 142 8 144 1.80e-18 79.3
Msa0470620 AT1G18750.3 44.156 77 43 0 1 77 1 77 2.83e-18 81.6
Msa0470620 AT1G77950.3 50.704 71 34 1 1 71 1 70 1.29e-17 78.2
Msa0470620 AT1G77950.2 50.704 71 34 1 1 71 1 70 1.29e-17 78.2
Msa0470620 AT1G77950.1 50.704 71 34 1 1 71 1 70 1.29e-17 78.2
Msa0470620 AT1G77950.4 50.704 71 34 1 1 71 1 70 1.29e-17 78.2
Msa0470620 AT1G77080.2 35.976 164 93 3 1 160 1 156 1.79e-17 76.6
Msa0470620 AT1G77080.12 36.620 142 82 2 1 142 1 134 6.56e-17 73.9
Msa0470620 AT1G77080.8 33.511 188 96 6 1 160 1 187 1.66e-16 74.7
Msa0470620 AT2G03060.2 38.202 89 55 0 1 89 1 89 3.78e-16 75.5
Msa0470620 AT2G03060.3 38.202 89 55 0 1 89 1 89 3.93e-16 75.5
Msa0470620 AT2G03060.7 38.202 89 55 0 1 89 1 89 3.93e-16 75.5
Msa0470620 AT2G03060.1 38.202 89 55 0 1 89 1 89 3.93e-16 75.5
Msa0470620 AT1G47760.1 31.788 151 85 4 1 143 1 141 6.97e-16 72.0
Msa0470620 AT4G37435.1 45.455 77 39 1 1 74 1 77 8.39e-16 72.0
Msa0470620 AT1G01530.1 44.776 67 36 1 1 66 6 72 1.81e-14 69.7
Msa0470620 AT1G65360.1 44.118 68 35 1 1 68 6 70 2.09e-14 68.9
Msa0470620 AT1G69540.1 54.717 53 24 0 1 53 1 53 6.40e-14 68.9
Msa0470620 AT1G69540.2 54.717 53 24 0 1 53 1 53 7.28e-14 68.9
Msa0470620 AT2G34440.1 38.356 73 43 1 1 73 1 71 9.96e-14 66.2
Msa0470620 AT1G72350.1 38.636 88 50 1 2 89 43 126 4.11e-13 65.5
Msa0470620 AT2G24840.1 42.254 71 39 1 1 71 62 130 4.26e-13 65.9
Msa0470620 AT4G36590.1 49.180 61 31 0 2 62 7 67 5.53e-13 65.5
Msa0470620 AT3G04100.1 37.838 74 44 1 2 75 14 85 9.12e-13 64.3
Msa0470620 AT5G60440.1 36.047 86 51 2 2 87 7 88 9.79e-13 65.5
Msa0470620 AT3G66656.1 36.923 65 41 0 1 65 1 65 2.59e-12 62.4
Msa0470620 AT1G28460.1 45.312 64 35 0 2 65 8 71 4.89e-12 62.0
Msa0470620 AT2G26320.1 39.437 71 43 0 1 71 17 87 5.86e-12 60.1
Msa0470620 AT1G29962.1 43.750 64 36 0 2 65 8 71 6.84e-12 61.6

Find 43 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTCTCTTTGGTGCTTC+TGG 0.183578 3_3:+72757926 Msa0470620:CDS
GTTAAGGTTGATTGATATTC+TGG 0.185614 3_3:+72758074 Msa0470620:intron
CAAGTTTCCCTTATTCTCTT+TGG 0.200754 3_3:+72757917 Msa0470620:CDS
CAGAAGCACCAAAGAGAATA+AGG 0.239625 3_3:-72757925 None:intergenic
TCCCTTGAAAATGGTCTTAC+TGG 0.307586 3_3:+72758827 Msa0470620:CDS
GATCTTGGAGGATGAAAATA+AGG 0.308110 3_3:+72759261 Msa0470620:CDS
TTATTTCCTTTGCTTTCTTA+AGG 0.309717 3_3:-72757877 None:intergenic
TACTGGTGTCCGTGAGAAAA+AGG 0.354637 3_3:+72758844 Msa0470620:CDS
TGAAATTGATAGAATCAAAA+AGG 0.362176 3_3:+72758622 Msa0470620:CDS
GACAGATACCAGAGAGCCTC+TGG 0.368842 3_3:+72758096 Msa0470620:CDS
TGATCAACAGCAACAGCATA+TGG 0.396271 3_3:+72759912 Msa0470620:intron
TATTGCTCAGGGAAAGATCT+TGG 0.406615 3_3:+72759246 Msa0470620:intron
CTTGAGGAATCCCTTGAAAA+TGG 0.411239 3_3:+72758818 Msa0470620:CDS
TTCTATCAATTTCATTGCTA+AGG 0.430130 3_3:-72758613 None:intergenic
ACTTATTCAAAGAGAAAGAA+TGG 0.449287 3_3:+72757851 Msa0470620:CDS
GGATTGAAAACTCAAGCAAC+AGG 0.469738 3_3:+72757822 Msa0470620:CDS
GAGCCTCTGGGAAAACCCTA+TGG 0.475629 3_3:+72758109 Msa0470620:CDS
TATTAATTTCAGGCACTTGA+AGG 0.478480 3_3:+72758754 Msa0470620:intron
GCTAGAAGAAGAAGATGGGA+AGG 0.493097 3_3:+72757780 None:intergenic
GGGGTAAGATTGAGATCAAG+AGG 0.495877 3_3:+72757801 Msa0470620:CDS
AGAAGCACCAAAGAGAATAA+GGG 0.502470 3_3:-72757924 None:intergenic
CAACAGCATATGGCACTTGA+AGG 0.504524 3_3:+72759922 Msa0470620:CDS
TAGAAGAAGAAGATGGGAAG+GGG 0.534165 3_3:+72757782 None:intergenic
CCTCATGCTTAGCATCCCAT+AGG 0.537774 3_3:-72758125 None:intergenic
ATAAGTGCTTACGTGGTGGA+AGG 0.543600 3_3:-72757971 None:intergenic
TTTCAGGCACTTGAAGGGAG+AGG 0.544750 3_3:+72758760 Msa0470620:intron
ATTAATTTCAGGCACTTGAA+GGG 0.550773 3_3:+72758755 Msa0470620:intron
GCATATGGCACTTGAAGGTG+TGG 0.571758 3_3:+72759927 Msa0470620:CDS
TCCTACAGATGGAAGTGCAT+AGG 0.572079 3_3:+72758981 Msa0470620:intron
AGCCTCTGGGAAAACCCTAT+GGG 0.575896 3_3:+72758110 Msa0470620:CDS
ACAGCATGCAAATTGACCTC+AGG 0.580242 3_3:+72758651 Msa0470620:CDS
CTAGAAGAAGAAGATGGGAA+GGG 0.582114 3_3:+72757781 None:intergenic
TGCTCAGGGAAAGATCTTGG+AGG 0.595250 3_3:+72759249 Msa0470620:intron
CTCATGCTTAGCATCCCATA+GGG 0.604792 3_3:-72758124 None:intergenic
ACAGATACCAGAGAGCCTCT+GGG 0.613351 3_3:+72758097 Msa0470620:CDS
TAAGTGCTTACGTGGTGGAA+GGG 0.616789 3_3:-72757970 None:intergenic
CAAAGAGCTGATGTCCCTTG+AGG 0.627732 3_3:+72758802 Msa0470620:CDS
TGGAATCCTTAAGAAAGCAA+AGG 0.631436 3_3:+72757871 Msa0470620:CDS
TGGGAAACATGCATGGACAA+TGG 0.636022 3_3:+72759947 Msa0470620:CDS
GAAGGTGTGGGAAACATGCA+TGG 0.644321 3_3:+72759940 Msa0470620:CDS
CATATGGCACTTGAAGGTGT+GGG 0.672701 3_3:+72759928 Msa0470620:CDS
CAGCTCTTTGTAATTCAGTG+AGG 0.683025 3_3:-72758789 None:intergenic
CCTATGGGATGCTAAGCATG+AGG 0.686598 3_3:+72758125 Msa0470620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATCTAATTTTTTTATTTTT+TGG + chr3_3:72758052-72758071 Msa0470620:intron 10.0%
!!! ATTTTTTTATTTTTTGGTTA+AGG + chr3_3:72758058-72758077 Msa0470620:intron 10.0%
!!! TTTGTTATTGAAAAATAATA+GGG - chr3_3:72759466-72759485 None:intergenic 10.0%
!!! ATTTGTTATTGAAAAATAAT+AGG - chr3_3:72759467-72759486 None:intergenic 10.0%
!!! CATCTAATTTTTTTATTTTT+TGG + chr3_3:72758052-72758071 Msa0470620:intron 10.0%
!!! ATTTTTTTATTTTTTGGTTA+AGG + chr3_3:72758058-72758077 Msa0470620:intron 10.0%
!!! TTTGTTATTGAAAAATAATA+GGG - chr3_3:72759466-72759485 None:intergenic 10.0%
!!! ATTTGTTATTGAAAAATAAT+AGG - chr3_3:72759467-72759486 None:intergenic 10.0%
!!! TTTTTGTTTTTCTTTTTGTT+AGG + chr3_3:72758016-72758035 Msa0470620:intron 15.0%
!!! TTTTGTTTTTCTTTTTGTTA+GGG + chr3_3:72758017-72758036 Msa0470620:intron 15.0%
!! ATATAATATGTTATTGAGAA+AGG + chr3_3:72758300-72758319 Msa0470620:intron 15.0%
!!! TATTGTTCTTTTTTCTTTTT+TGG + chr3_3:72758565-72758584 Msa0470620:intron 15.0%
!!! ATAAATTTTGATTATAGCTA+GGG - chr3_3:72758709-72758728 None:intergenic 15.0%
!!! TATAAATTTTGATTATAGCT+AGG - chr3_3:72758710-72758729 None:intergenic 15.0%
!! TTTATAAATATCATTGATCA+AGG + chr3_3:72758724-72758743 Msa0470620:intron 15.0%
!! TTATAAATATCATTGATCAA+GGG + chr3_3:72758725-72758744 Msa0470620:intron 15.0%
!!! TTTTTTAAAATTTTGCCTTA+CGG + chr3_3:72758946-72758965 Msa0470620:intron 15.0%
!!! TTTTGTTAGACATATAATTA+CGG - chr3_3:72759108-72759127 None:intergenic 15.0%
!! AGTTAAGCAAAAATAAAAAA+AGG - chr3_3:72759210-72759229 None:intergenic 15.0%
!! TCAATATTTATGTTCTAATA+TGG + chr3_3:72759361-72759380 Msa0470620:intron 15.0%
!!! TTTTTGTTTTTCTTTTTGTT+AGG + chr3_3:72758016-72758035 Msa0470620:intron 15.0%
!!! TTTTGTTTTTCTTTTTGTTA+GGG + chr3_3:72758017-72758036 Msa0470620:intron 15.0%
!! ATATAATATGTTATTGAGAA+AGG + chr3_3:72758300-72758319 Msa0470620:intron 15.0%
!!! TATTGTTCTTTTTTCTTTTT+TGG + chr3_3:72758565-72758584 Msa0470620:intron 15.0%
!!! ATAAATTTTGATTATAGCTA+GGG - chr3_3:72758709-72758728 None:intergenic 15.0%
!!! TATAAATTTTGATTATAGCT+AGG - chr3_3:72758710-72758729 None:intergenic 15.0%
!! TTTATAAATATCATTGATCA+AGG + chr3_3:72758724-72758743 Msa0470620:intron 15.0%
!! TTATAAATATCATTGATCAA+GGG + chr3_3:72758725-72758744 Msa0470620:intron 15.0%
!!! TTTTTTAAAATTTTGCCTTA+CGG + chr3_3:72758946-72758965 Msa0470620:intron 15.0%
!!! TTTTGTTAGACATATAATTA+CGG - chr3_3:72759108-72759127 None:intergenic 15.0%
!! AGTTAAGCAAAAATAAAAAA+AGG - chr3_3:72759210-72759229 None:intergenic 15.0%
!! TCAATATTTATGTTCTAATA+TGG + chr3_3:72759361-72759380 Msa0470620:intron 15.0%
!! AACAAAAAAGTTTCAAAGAA+GGG - chr3_3:72758004-72758023 None:intergenic 20.0%
!! AAACAAAAAAGTTTCAAAGA+AGG - chr3_3:72758005-72758024 None:intergenic 20.0%
!!! TTTTTGCTAAAAATATGTTG+AGG + chr3_3:72758214-72758233 Msa0470620:intron 20.0%
!! AAATAATCTTAGCAAAGAAA+AGG - chr3_3:72758397-72758416 None:intergenic 20.0%
!! ATCTAATACCTAGAAAATTA+AGG - chr3_3:72758432-72758451 None:intergenic 20.0%
!! TGAAATTGATAGAATCAAAA+AGG + chr3_3:72758622-72758641 Msa0470620:CDS 20.0%
!! AAATATTTGTATAATACCTG+AGG - chr3_3:72758670-72758689 None:intergenic 20.0%
!!! AATTAATTACCTTTTTCTCA+CGG - chr3_3:72758856-72758875 None:intergenic 20.0%
!! AGAAAATGTTAATTAGTAAG+TGG + chr3_3:72759508-72759527 Msa0470620:intron 20.0%
!! CAATATCAAATAGTTTACTA+TGG + chr3_3:72759776-72759795 Msa0470620:intron 20.0%
!! TGTTGATCAAAAATGAAAAA+AGG - chr3_3:72759901-72759920 None:intergenic 20.0%
!! AACAAAAAAGTTTCAAAGAA+GGG - chr3_3:72758004-72758023 None:intergenic 20.0%
!! AAACAAAAAAGTTTCAAAGA+AGG - chr3_3:72758005-72758024 None:intergenic 20.0%
!!! TTTTTGCTAAAAATATGTTG+AGG + chr3_3:72758214-72758233 Msa0470620:intron 20.0%
!! AAATAATCTTAGCAAAGAAA+AGG - chr3_3:72758397-72758416 None:intergenic 20.0%
!! ATCTAATACCTAGAAAATTA+AGG - chr3_3:72758432-72758451 None:intergenic 20.0%
!! TGAAATTGATAGAATCAAAA+AGG + chr3_3:72758622-72758641 Msa0470620:CDS 20.0%
!! AAATATTTGTATAATACCTG+AGG - chr3_3:72758670-72758689 None:intergenic 20.0%
!!! AATTAATTACCTTTTTCTCA+CGG - chr3_3:72758856-72758875 None:intergenic 20.0%
!! AGAAAATGTTAATTAGTAAG+TGG + chr3_3:72759508-72759527 Msa0470620:intron 20.0%
!! CAATATCAAATAGTTTACTA+TGG + chr3_3:72759776-72759795 Msa0470620:intron 20.0%
!! TGTTGATCAAAAATGAAAAA+AGG - chr3_3:72759901-72759920 None:intergenic 20.0%
! ACTTATTCAAAGAGAAAGAA+TGG + chr3_3:72757851-72757870 Msa0470620:CDS 25.0%
! TTATTTCCTTTGCTTTCTTA+AGG - chr3_3:72757880-72757899 None:intergenic 25.0%
! GTATTAGATAACAAAGATGA+TGG + chr3_3:72758443-72758462 Msa0470620:intron 25.0%
!! GAAGTCAAAAATGAACATTT+TGG - chr3_3:72758536-72758555 None:intergenic 25.0%
!!! TTTTCTTTTTTGGTGTGTTT+TGG + chr3_3:72758575-72758594 Msa0470620:intron 25.0%
! TTCTATCAATTTCATTGCTA+AGG - chr3_3:72758616-72758635 None:intergenic 25.0%
! AGGGTACATATATTAATTTC+AGG + chr3_3:72758744-72758763 Msa0470620:intron 25.0%
! TAATAAGCCCTGATATATAT+AGG + chr3_3:72759385-72759404 Msa0470620:intron 25.0%
! AACTAAAAGCTTTCAACAAT+TGG - chr3_3:72759586-72759605 None:intergenic 25.0%
!!! TTGTTGAAAGCTTTTAGTTA+AGG + chr3_3:72759587-72759606 Msa0470620:intron 25.0%
!!! TGTTGAAAGCTTTTAGTTAA+GGG + chr3_3:72759588-72759607 Msa0470620:intron 25.0%
! TGTTTAATGCTATTGTTGAT+TGG - chr3_3:72759858-72759877 None:intergenic 25.0%
! ACTTATTCAAAGAGAAAGAA+TGG + chr3_3:72757851-72757870 Msa0470620:CDS 25.0%
! TTATTTCCTTTGCTTTCTTA+AGG - chr3_3:72757880-72757899 None:intergenic 25.0%
! GTATTAGATAACAAAGATGA+TGG + chr3_3:72758443-72758462 Msa0470620:intron 25.0%
!! GAAGTCAAAAATGAACATTT+TGG - chr3_3:72758536-72758555 None:intergenic 25.0%
!!! TTTTCTTTTTTGGTGTGTTT+TGG + chr3_3:72758575-72758594 Msa0470620:intron 25.0%
! TTCTATCAATTTCATTGCTA+AGG - chr3_3:72758616-72758635 None:intergenic 25.0%
! AGGGTACATATATTAATTTC+AGG + chr3_3:72758744-72758763 Msa0470620:intron 25.0%
! TAATAAGCCCTGATATATAT+AGG + chr3_3:72759385-72759404 Msa0470620:intron 25.0%
! AACTAAAAGCTTTCAACAAT+TGG - chr3_3:72759586-72759605 None:intergenic 25.0%
!!! TTGTTGAAAGCTTTTAGTTA+AGG + chr3_3:72759587-72759606 Msa0470620:intron 25.0%
!!! TGTTGAAAGCTTTTAGTTAA+GGG + chr3_3:72759588-72759607 Msa0470620:intron 25.0%
! TGTTTAATGCTATTGTTGAT+TGG - chr3_3:72759858-72759877 None:intergenic 25.0%
AACATATATAAGTGCTTACG+TGG - chr3_3:72757981-72758000 None:intergenic 30.0%
! GTTAAGGTTGATTGATATTC+TGG + chr3_3:72758074-72758093 Msa0470620:intron 30.0%
TCTCAATATATGAACAGATC+TGG + chr3_3:72758347-72758366 Msa0470620:intron 30.0%
! AGCTGAATCCTTAATTTTCT+AGG + chr3_3:72758421-72758440 Msa0470620:intron 30.0%
TATTAATTTCAGGCACTTGA+AGG + chr3_3:72758754-72758773 Msa0470620:intron 30.0%
ATTAATTTCAGGCACTTGAA+GGG + chr3_3:72758755-72758774 Msa0470620:intron 30.0%
!! TCCTTTTGATCACTTTTCAA+GGG - chr3_3:72759138-72759157 None:intergenic 30.0%
!! TTCCTTTTGATCACTTTTCA+AGG - chr3_3:72759139-72759158 None:intergenic 30.0%
! TAAGGAACTCAATTTTCTTC+TGG + chr3_3:72759279-72759298 Msa0470620:CDS 30.0%
TCATGAGCCTATATATATCA+GGG - chr3_3:72759395-72759414 None:intergenic 30.0%
ATCATGAGCCTATATATATC+AGG - chr3_3:72759396-72759415 None:intergenic 30.0%
TGATATATATAGGCTCATGA+TGG + chr3_3:72759395-72759414 Msa0470620:intron 30.0%
! GCTTTCAACAATTGGTAATT+GGG - chr3_3:72759578-72759597 None:intergenic 30.0%
! AGCTTTCAACAATTGGTAAT+TGG - chr3_3:72759579-72759598 None:intergenic 30.0%
AACATATATAAGTGCTTACG+TGG - chr3_3:72757981-72758000 None:intergenic 30.0%
! GTTAAGGTTGATTGATATTC+TGG + chr3_3:72758074-72758093 Msa0470620:intron 30.0%
TCTCAATATATGAACAGATC+TGG + chr3_3:72758347-72758366 Msa0470620:intron 30.0%
! AGCTGAATCCTTAATTTTCT+AGG + chr3_3:72758421-72758440 Msa0470620:intron 30.0%
TATTAATTTCAGGCACTTGA+AGG + chr3_3:72758754-72758773 Msa0470620:intron 30.0%
ATTAATTTCAGGCACTTGAA+GGG + chr3_3:72758755-72758774 Msa0470620:intron 30.0%
!! TCCTTTTGATCACTTTTCAA+GGG - chr3_3:72759138-72759157 None:intergenic 30.0%
!! TTCCTTTTGATCACTTTTCA+AGG - chr3_3:72759139-72759158 None:intergenic 30.0%
! TAAGGAACTCAATTTTCTTC+TGG + chr3_3:72759279-72759298 Msa0470620:CDS 30.0%
TCATGAGCCTATATATATCA+GGG - chr3_3:72759395-72759414 None:intergenic 30.0%
ATCATGAGCCTATATATATC+AGG - chr3_3:72759396-72759415 None:intergenic 30.0%
TGATATATATAGGCTCATGA+TGG + chr3_3:72759395-72759414 Msa0470620:intron 30.0%
! GCTTTCAACAATTGGTAATT+GGG - chr3_3:72759578-72759597 None:intergenic 30.0%
! AGCTTTCAACAATTGGTAAT+TGG - chr3_3:72759579-72759598 None:intergenic 30.0%
TGGAATCCTTAAGAAAGCAA+AGG + chr3_3:72757871-72757890 Msa0470620:CDS 35.0%
CAAGTTTCCCTTATTCTCTT+TGG + chr3_3:72757917-72757936 Msa0470620:CDS 35.0%
!! AGAAGCACCAAAGAGAATAA+GGG - chr3_3:72757927-72757946 None:intergenic 35.0%
ATATATAAGTGCTTACGTGG+TGG - chr3_3:72757978-72757997 None:intergenic 35.0%
! AGATCTAGTCACAGAGTTTT+TGG - chr3_3:72758248-72758267 None:intergenic 35.0%
TCTGTGACTAGATCTACATT+TGG + chr3_3:72758253-72758272 Msa0470620:intron 35.0%
!! TGAACATTTTGGTGTAGATC+TGG - chr3_3:72758525-72758544 None:intergenic 35.0%
!! ATTTTCAAGGGATTCCTCAA+GGG - chr3_3:72758819-72758838 None:intergenic 35.0%
! ACCAGTAAGACCATTTTCAA+GGG - chr3_3:72758831-72758850 None:intergenic 35.0%
! TTCTTTGTTTGTCCTACAGA+TGG + chr3_3:72758970-72758989 Msa0470620:intron 35.0%
TCCCTTGAAAAGTGATCAAA+AGG + chr3_3:72759134-72759153 Msa0470620:intron 35.0%
TGATTCCTTTGATATTGCTC+AGG + chr3_3:72759234-72759253 Msa0470620:intron 35.0%
GATTCCTTTGATATTGCTCA+GGG + chr3_3:72759235-72759254 Msa0470620:intron 35.0%
GATCTTGGAGGATGAAAATA+AGG + chr3_3:72759261-72759280 Msa0470620:CDS 35.0%
! CTCAATTTTCTTCTGGTAAG+TGG + chr3_3:72759286-72759305 Msa0470620:intron 35.0%
! AATTTTCTTCTGGTAAGTGG+TGG + chr3_3:72759289-72759308 Msa0470620:intron 35.0%
GAGTTGAAGAGCTAACTTAT+TGG - chr3_3:72759543-72759562 None:intergenic 35.0%
TGGAATCCTTAAGAAAGCAA+AGG + chr3_3:72757871-72757890 Msa0470620:CDS 35.0%
CAAGTTTCCCTTATTCTCTT+TGG + chr3_3:72757917-72757936 Msa0470620:CDS 35.0%
!! AGAAGCACCAAAGAGAATAA+GGG - chr3_3:72757927-72757946 None:intergenic 35.0%
ATATATAAGTGCTTACGTGG+TGG - chr3_3:72757978-72757997 None:intergenic 35.0%
! AGATCTAGTCACAGAGTTTT+TGG - chr3_3:72758248-72758267 None:intergenic 35.0%
TCTGTGACTAGATCTACATT+TGG + chr3_3:72758253-72758272 Msa0470620:intron 35.0%
!! TGAACATTTTGGTGTAGATC+TGG - chr3_3:72758525-72758544 None:intergenic 35.0%
!! ATTTTCAAGGGATTCCTCAA+GGG - chr3_3:72758819-72758838 None:intergenic 35.0%
! ACCAGTAAGACCATTTTCAA+GGG - chr3_3:72758831-72758850 None:intergenic 35.0%
! TTCTTTGTTTGTCCTACAGA+TGG + chr3_3:72758970-72758989 Msa0470620:intron 35.0%
TCCCTTGAAAAGTGATCAAA+AGG + chr3_3:72759134-72759153 Msa0470620:intron 35.0%
TGATTCCTTTGATATTGCTC+AGG + chr3_3:72759234-72759253 Msa0470620:intron 35.0%
GATTCCTTTGATATTGCTCA+GGG + chr3_3:72759235-72759254 Msa0470620:intron 35.0%
GATCTTGGAGGATGAAAATA+AGG + chr3_3:72759261-72759280 Msa0470620:CDS 35.0%
! CTCAATTTTCTTCTGGTAAG+TGG + chr3_3:72759286-72759305 Msa0470620:intron 35.0%
! AATTTTCTTCTGGTAAGTGG+TGG + chr3_3:72759289-72759308 Msa0470620:intron 35.0%
GAGTTGAAGAGCTAACTTAT+TGG - chr3_3:72759543-72759562 None:intergenic 35.0%
GGATTGAAAACTCAAGCAAC+AGG + chr3_3:72757822-72757841 Msa0470620:CDS 40.0%
!! CAGAAGCACCAAAGAGAATA+AGG - chr3_3:72757928-72757947 None:intergenic 40.0%
!! CTTATTCTCTTTGGTGCTTC+TGG + chr3_3:72757926-72757945 Msa0470620:CDS 40.0%
TGAAAAAACACGCAGTCAAG+AGG - chr3_3:72758474-72758493 None:intergenic 40.0%
!! TGTAGATCTGGTTCTAAAGC+TGG - chr3_3:72758513-72758532 None:intergenic 40.0%
CAGCTCTTTGTAATTCAGTG+AGG - chr3_3:72758792-72758811 None:intergenic 40.0%
!! CATTTTCAAGGGATTCCTCA+AGG - chr3_3:72758820-72758839 None:intergenic 40.0%
CTTGAGGAATCCCTTGAAAA+TGG + chr3_3:72758818-72758837 Msa0470620:CDS 40.0%
! TCCCTTGAAAATGGTCTTAC+TGG + chr3_3:72758827-72758846 Msa0470620:CDS 40.0%
! CACCAGTAAGACCATTTTCA+AGG - chr3_3:72758832-72758851 None:intergenic 40.0%
GGACAAACAAAGAAACCGTA+AGG - chr3_3:72758964-72758983 None:intergenic 40.0%
CTTTCCCTGAGCAATATCAA+AGG - chr3_3:72759242-72759261 None:intergenic 40.0%
TATTGCTCAGGGAAAGATCT+TGG + chr3_3:72759246-72759265 Msa0470620:intron 40.0%
TGATCAACAGCAACAGCATA+TGG + chr3_3:72759912-72759931 Msa0470620:intron 40.0%
GGATTGAAAACTCAAGCAAC+AGG + chr3_3:72757822-72757841 Msa0470620:CDS 40.0%
!! CAGAAGCACCAAAGAGAATA+AGG - chr3_3:72757928-72757947 None:intergenic 40.0%
!! CTTATTCTCTTTGGTGCTTC+TGG + chr3_3:72757926-72757945 Msa0470620:CDS 40.0%
TGAAAAAACACGCAGTCAAG+AGG - chr3_3:72758474-72758493 None:intergenic 40.0%
!! TGTAGATCTGGTTCTAAAGC+TGG - chr3_3:72758513-72758532 None:intergenic 40.0%
CAGCTCTTTGTAATTCAGTG+AGG - chr3_3:72758792-72758811 None:intergenic 40.0%
!! CATTTTCAAGGGATTCCTCA+AGG - chr3_3:72758820-72758839 None:intergenic 40.0%
CTTGAGGAATCCCTTGAAAA+TGG + chr3_3:72758818-72758837 Msa0470620:CDS 40.0%
! TCCCTTGAAAATGGTCTTAC+TGG + chr3_3:72758827-72758846 Msa0470620:CDS 40.0%
! CACCAGTAAGACCATTTTCA+AGG - chr3_3:72758832-72758851 None:intergenic 40.0%
GGACAAACAAAGAAACCGTA+AGG - chr3_3:72758964-72758983 None:intergenic 40.0%
CTTTCCCTGAGCAATATCAA+AGG - chr3_3:72759242-72759261 None:intergenic 40.0%
TATTGCTCAGGGAAAGATCT+TGG + chr3_3:72759246-72759265 Msa0470620:intron 40.0%
TGATCAACAGCAACAGCATA+TGG + chr3_3:72759912-72759931 Msa0470620:intron 40.0%
GGGGTAAGATTGAGATCAAG+AGG + chr3_3:72757801-72757820 Msa0470620:CDS 45.0%
! TAAGTGCTTACGTGGTGGAA+GGG - chr3_3:72757973-72757992 None:intergenic 45.0%
! ATAAGTGCTTACGTGGTGGA+AGG - chr3_3:72757974-72757993 None:intergenic 45.0%
CTCATGCTTAGCATCCCATA+GGG - chr3_3:72758127-72758146 None:intergenic 45.0%
ACAGCATGCAAATTGACCTC+AGG + chr3_3:72758651-72758670 Msa0470620:CDS 45.0%
TACTGGTGTCCGTGAGAAAA+AGG + chr3_3:72758844-72758863 Msa0470620:CDS 45.0%
! TCCTACAGATGGAAGTGCAT+AGG + chr3_3:72758981-72759000 Msa0470620:intron 45.0%
TCCTATGCACTTCCATCTGT+AGG - chr3_3:72758985-72759004 None:intergenic 45.0%
CAACAGCATATGGCACTTGA+AGG + chr3_3:72759922-72759941 Msa0470620:CDS 45.0%
! CATATGGCACTTGAAGGTGT+GGG + chr3_3:72759928-72759947 Msa0470620:CDS 45.0%
TGGGAAACATGCATGGACAA+TGG + chr3_3:72759947-72759966 Msa0470620:CDS 45.0%
GGGGTAAGATTGAGATCAAG+AGG + chr3_3:72757801-72757820 Msa0470620:CDS 45.0%
! TAAGTGCTTACGTGGTGGAA+GGG - chr3_3:72757973-72757992 None:intergenic 45.0%
! ATAAGTGCTTACGTGGTGGA+AGG - chr3_3:72757974-72757993 None:intergenic 45.0%
CTCATGCTTAGCATCCCATA+GGG - chr3_3:72758127-72758146 None:intergenic 45.0%
ACAGCATGCAAATTGACCTC+AGG + chr3_3:72758651-72758670 Msa0470620:CDS 45.0%
TACTGGTGTCCGTGAGAAAA+AGG + chr3_3:72758844-72758863 Msa0470620:CDS 45.0%
! TCCTACAGATGGAAGTGCAT+AGG + chr3_3:72758981-72759000 Msa0470620:intron 45.0%
TCCTATGCACTTCCATCTGT+AGG - chr3_3:72758985-72759004 None:intergenic 45.0%
CAACAGCATATGGCACTTGA+AGG + chr3_3:72759922-72759941 Msa0470620:CDS 45.0%
! CATATGGCACTTGAAGGTGT+GGG + chr3_3:72759928-72759947 Msa0470620:CDS 45.0%
TGGGAAACATGCATGGACAA+TGG + chr3_3:72759947-72759966 Msa0470620:CDS 45.0%
!!! TTTTCATATTTATTTATTTT+TGG + chr3_3:72758152-72758171 Msa0470620:intron 5.0%
!! AAAAAGTAAATAAATAAATA+AGG + chr3_3:72759082-72759101 Msa0470620:intron 5.0%
!!! TTTTCATATTTATTTATTTT+TGG + chr3_3:72758152-72758171 Msa0470620:intron 5.0%
!! AAAAAGTAAATAAATAAATA+AGG + chr3_3:72759082-72759101 Msa0470620:intron 5.0%
ACAGATACCAGAGAGCCTCT+GGG + chr3_3:72758097-72758116 Msa0470620:CDS 50.0%
! AGCCTCTGGGAAAACCCTAT+GGG + chr3_3:72758110-72758129 Msa0470620:CDS 50.0%
! ATCCCATAGGGTTTTCCCAG+AGG - chr3_3:72758115-72758134 None:intergenic 50.0%
CCTCATGCTTAGCATCCCAT+AGG - chr3_3:72758128-72758147 None:intergenic 50.0%
CCTATGGGATGCTAAGCATG+AGG + chr3_3:72758125-72758144 Msa0470620:CDS 50.0%
TGGGATGCTAAGCATGAGGT+AGG + chr3_3:72758129-72758148 Msa0470620:intron 50.0%
TTTCAGGCACTTGAAGGGAG+AGG + chr3_3:72758760-72758779 Msa0470620:intron 50.0%
CAAAGAGCTGATGTCCCTTG+AGG + chr3_3:72758802-72758821 Msa0470620:CDS 50.0%
TGCTCAGGGAAAGATCTTGG+AGG + chr3_3:72759249-72759268 Msa0470620:intron 50.0%
GCATATGGCACTTGAAGGTG+TGG + chr3_3:72759927-72759946 Msa0470620:CDS 50.0%
! GAAGGTGTGGGAAACATGCA+TGG + chr3_3:72759940-72759959 Msa0470620:CDS 50.0%
ACAGATACCAGAGAGCCTCT+GGG + chr3_3:72758097-72758116 Msa0470620:CDS 50.0%
! AGCCTCTGGGAAAACCCTAT+GGG + chr3_3:72758110-72758129 Msa0470620:CDS 50.0%
! ATCCCATAGGGTTTTCCCAG+AGG - chr3_3:72758115-72758134 None:intergenic 50.0%
CCTCATGCTTAGCATCCCAT+AGG - chr3_3:72758128-72758147 None:intergenic 50.0%
CCTATGGGATGCTAAGCATG+AGG + chr3_3:72758125-72758144 Msa0470620:CDS 50.0%
TGGGATGCTAAGCATGAGGT+AGG + chr3_3:72758129-72758148 Msa0470620:intron 50.0%
TTTCAGGCACTTGAAGGGAG+AGG + chr3_3:72758760-72758779 Msa0470620:intron 50.0%
CAAAGAGCTGATGTCCCTTG+AGG + chr3_3:72758802-72758821 Msa0470620:CDS 50.0%
TGCTCAGGGAAAGATCTTGG+AGG + chr3_3:72759249-72759268 Msa0470620:intron 50.0%
GCATATGGCACTTGAAGGTG+TGG + chr3_3:72759927-72759946 Msa0470620:CDS 50.0%
! GAAGGTGTGGGAAACATGCA+TGG + chr3_3:72759940-72759959 Msa0470620:CDS 50.0%
GACAGATACCAGAGAGCCTC+TGG + chr3_3:72758096-72758115 Msa0470620:CDS 55.0%
! GAGCCTCTGGGAAAACCCTA+TGG + chr3_3:72758109-72758128 Msa0470620:CDS 55.0%
GACAGATACCAGAGAGCCTC+TGG + chr3_3:72758096-72758115 Msa0470620:CDS 55.0%
! GAGCCTCTGGGAAAACCCTA+TGG + chr3_3:72758109-72758128 Msa0470620:CDS 55.0%
! GGGTTTTCCCAGAGGCTCTC+TGG - chr3_3:72758107-72758126 None:intergenic 60.0%
! GGGTTTTCCCAGAGGCTCTC+TGG - chr3_3:72758107-72758126 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72757794 72759975 72757794 ID=Msa0470620;Name=Msa0470620
chr3_3 mRNA 72757794 72759975 72757794 ID=Msa0470620-mRNA-1;Parent=Msa0470620;Name=Msa0470620-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.85|1|1|7|0|181
chr3_3 exon 72757794 72757981 72757794 ID=Msa0470620-mRNA-1:exon:18284;Parent=Msa0470620-mRNA-1
chr3_3 exon 72758080 72758146 72758080 ID=Msa0470620-mRNA-1:exon:18285;Parent=Msa0470620-mRNA-1
chr3_3 exon 72758611 72758672 72758611 ID=Msa0470620-mRNA-1:exon:18286;Parent=Msa0470620-mRNA-1
chr3_3 exon 72758766 72758865 72758766 ID=Msa0470620-mRNA-1:exon:18287;Parent=Msa0470620-mRNA-1
chr3_3 exon 72758989 72759018 72758989 ID=Msa0470620-mRNA-1:exon:18288;Parent=Msa0470620-mRNA-1
chr3_3 exon 72759256 72759300 72759256 ID=Msa0470620-mRNA-1:exon:18289;Parent=Msa0470620-mRNA-1
chr3_3 exon 72759922 72759975 72759922 ID=Msa0470620-mRNA-1:exon:18290;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72757794 72757981 72757794 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72758080 72758146 72758080 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72758611 72758672 72758611 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72758766 72758865 72758766 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72758989 72759018 72758989 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72759256 72759300 72759256 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
chr3_3 CDS 72759922 72759975 72759922 ID=Msa0470620-mRNA-1:cds;Parent=Msa0470620-mRNA-1
Gene Sequence

>Msa0470620

ATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGAATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTTTGTGATGCTCAAGTTTCCCTTATTCTCTTTGGTGCTTCTGGTAAGATGCATGAATACATCAGCCCTTCCACCACGTTGATTGATATTCTGGACAGATACCAGAGAGCCTCTGGGAAAACCCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGACAGCATGCAAATTGACCTCAGGCACTTGAAGGGAGAGGACATTACCTCACTGAATTACAAAGAGCTGATGTCCCTTGAGGAATCCCTTGAAAATGGTCTTACTGGTGTCCGTGAGAAAAAGATGGAAGTGCATAGGATGTTCAAGAGAAATGGAAAGATCTTGGAGGATGAAAATAAGGAACTCAATTTTCTTCTGCAACAGCATATGGCACTTGAAGGTGTGGGAAACATGCATGGACAATGGATTTAA
Protein sequence

>Msa0470620

MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIDLRHLKGEDITSLNYKELMSLEESLENGLTGVREKKMEVHRMFKRNGKILEDENKELNFLLQQHMALEGVGNMHGQWI*