AlfalfaGEDB | Msa0470930

M. sativa cultivar zhongmu-4 / Msa0470930

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470930	KEH35387.1	97.500	600	14	1	1	599	1	600	0.0	1221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470930	sp\|Q9C821\|PEK15_ARATH	43.345	293	158	4	295	581	129	419	2.34e-77	257

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470930	A0A072V0S7	97.500	600	14	1	1	599	1	600	0.0	1221

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470930	MtrunA17_Chr3g0125631	98.592	355	5	0	245	599	9	363	0.0	740
Msa0470930	MtrunA17_Chr3g0125621	95.935	246	9	1	1	245	1	246	1.16e-170	484
Msa0470930	MtrunA17_Chr8g0341881	52.104	309	146	2	275	582	371	678	2.24e-108	342
Msa0470930	MtrunA17_Chr2g0330471	49.679	312	155	2	273	583	371	681	8.47e-108	339
Msa0470930	MtrunA17_Chr8g0389251	48.220	309	158	2	275	582	370	677	4.72e-104	329
Msa0470930	MtrunA17_Chr3g0144481	43.366	309	166	5	297	598	77	383	2.42e-83	268
Msa0470930	MtrunA17_Chr3g0080901	43.505	331	173	6	253	579	70	390	5.05e-82	266
Msa0470930	MtrunA17_Chr1g0154291	43.082	318	171	4	273	581	236	552	6.27e-80	263
Msa0470930	MtrunA17_Chr7g0221191	44.637	289	153	5	297	580	383	669	9.65e-80	266
Msa0470930	MtrunA17_Chr5g0413511	44.291	289	154	4	297	580	47	333	2.95e-77	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470930	AT3G13690.2	49.838	309	153	2	275	582	377	684	5.17e-106	337
Msa0470930	AT3G13690.1	49.838	309	153	2	275	582	377	684	5.17e-106	337
Msa0470930	AT3G13690.3	49.838	309	153	2	275	582	377	684	5.17e-106	337
Msa0470930	AT5G56790.1	50.804	311	151	2	273	582	354	663	2.13e-105	332
Msa0470930	AT1G55200.3	49.026	308	155	2	276	582	346	652	1.41e-104	330
Msa0470930	AT1G55200.4	49.026	308	155	2	276	582	346	652	1.41e-104	330
Msa0470930	AT1G55200.1	49.026	308	155	2	276	582	346	652	1.41e-104	330
Msa0470930	AT1G55200.2	49.026	308	155	2	276	582	346	652	1.41e-104	330
Msa0470930	AT1G52290.1	43.345	293	158	4	295	581	129	419	2.38e-78	257
Msa0470930	AT5G38560.1	45.361	291	150	5	297	580	327	615	5.07e-78	261

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Find 117 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATGGTATTGCACTT+GGG	0.604657	3_3:+73127637	Msa0470930:CDS
AAAGCCAACTTCTCCATGAT+TGG	0.422720	3_3:-73128410	None:intergenic
AACAAATAGCTGCAAAAGTA+AGG	0.421055	3_3:+73127327	Msa0470930:CDS
AACAACAATCTCTCCGACAA+TGG	0.480539	3_3:+73128235	Msa0470930:CDS
AACTTGGACAAAGAATACAC+AGG	0.726749	3_3:-73126497	None:intergenic
AAGAATATAGTGATGCTGTT+GGG	0.403477	3_3:+73127419	Msa0470930:CDS
AAGATGGTATTGTTTCTGAA+GGG	0.632035	3_3:+73128130	Msa0470930:CDS
AAGGACAGAGTTATCTATCA+AGG	0.545429	3_3:+73127187	Msa0470930:CDS
AAGGATAACTTAATAGGTGA+AGG	0.563983	3_3:+73127263	Msa0470930:CDS
AAGGTTGTGCGATTTCTTGA+GGG	0.499596	3_3:+73128636	Msa0470930:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATATAATACTTACTAGGGT+GGG	-	chr3_3:73125722-73125741	None:intergenic	30.0%
TGATATAATACTTACTAGGG+TGG	-	chr3_3:73125723-73125742	None:intergenic	30.0%
TAGACAGATTATCTTACAAG+AGG	+	chr3_3:73126222-73126241	Msa0470930:CDS	30.0%
CATTACATGGTATCTTGTTA+AGG	-	chr3_3:73126400-73126419	None:intergenic	30.0%
ACATTGCAAAAGAATGAATG+TGG	-	chr3_3:73126768-73126787	None:intergenic	30.0%
GAAGAATACGAAGATAAAGA+CGG	-	chr3_3:73126931-73126950	None:intergenic	30.0%
TATCTATCAAGGAGTCAAAT+AGG	+	chr3_3:73127198-73127217	Msa0470930:CDS	30.0%
AAGGATAACTTAATAGGTGA+AGG	+	chr3_3:73127263-73127282	Msa0470930:CDS	30.0%
TGGATATGGTCATGTATATA+AGG	+	chr3_3:73127286-73127305	Msa0470930:CDS	30.0%
GGATATGGTCATGTATATAA+GGG	+	chr3_3:73127287-73127306	Msa0470930:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	73125556	73128716	73125556	ID=Msa0470930;Name=Msa0470930
chr3_3	mRNA	73125556	73128716	73125556	ID=Msa0470930-mRNA-1;Parent=Msa0470930;Name=Msa0470930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|10\|0\|599
chr3_3	exon	73125556	73125727	73125556	ID=Msa0470930-mRNA-1:exon:18469;Parent=Msa0470930-mRNA-1
chr3_3	exon	73125946	73126082	73125946	ID=Msa0470930-mRNA-1:exon:18470;Parent=Msa0470930-mRNA-1
chr3_3	exon	73126184	73126281	73126184	ID=Msa0470930-mRNA-1:exon:18471;Parent=Msa0470930-mRNA-1
chr3_3	exon	73126370	73126695	73126370	ID=Msa0470930-mRNA-1:exon:18472;Parent=Msa0470930-mRNA-1
chr3_3	exon	73127066	73127518	73127066	ID=Msa0470930-mRNA-1:exon:18473;Parent=Msa0470930-mRNA-1
chr3_3	exon	73127607	73127767	73127607	ID=Msa0470930-mRNA-1:exon:18474;Parent=Msa0470930-mRNA-1
chr3_3	exon	73127939	73128012	73127939	ID=Msa0470930-mRNA-1:exon:18475;Parent=Msa0470930-mRNA-1
chr3_3	exon	73128107	73128257	73128107	ID=Msa0470930-mRNA-1:exon:18476;Parent=Msa0470930-mRNA-1
chr3_3	exon	73128404	73128553	73128404	ID=Msa0470930-mRNA-1:exon:18477;Parent=Msa0470930-mRNA-1
chr3_3	exon	73128639	73128716	73128639	ID=Msa0470930-mRNA-1:exon:18478;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73125556	73125727	73125556	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73125946	73126082	73125946	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73126184	73126281	73126184	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73126370	73126695	73126370	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73127066	73127518	73127066	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73127607	73127767	73127607	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73127939	73128012	73127939	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73128107	73128257	73128107	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73128404	73128553	73128404	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1
chr3_3	CDS	73128639	73128716	73128639	ID=Msa0470930-mRNA-1:cds;Parent=Msa0470930-mRNA-1

Gene Sequence

>Msa0470930

ATGGACAGTCCTCCTTCTCCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCACGATATTAAGCTCGTCATCAATCATGTTCGTGACAGGGGTATCATTCTCTCTTCCGGTGATAGATTGCTTGTGCTCTGCATCTTGCATAAGGTGTCCCACCCTATGGGATACCAGACATTAGCCTGTCCTGAGTCTTTTGCTGGCACCAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTATATGCAAATGAGCTTTTATCATGTCTTGAAGATTTTGAAATCCAAGGGGTTACCATTGACATTCAAGTCACAGCAGGTTTTCCAATTAGACAGATTATCTTACAAGAGGTTAAAAACTATAATGCATCTTGGATTGTACTTGATAGATACCTTCGACGCGACATGAGATTCCACCTTAACAAGATACCATGTAATGTAGCATTAGTTAAAGATGACTTGTCTGTGGATATATGGAAATCTCAAAATGCACATGACAAAATTGCAGAAACAAAACCTGTGTATTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAGCAGTCTATTATCTCTTGCAAAAGTTATCCACATTCCTTAGCTTCTTCTGATAGCTCTGGCACTATTAAGAGCTATTCAATGCATTCATATAACAGTTCATTACATTCTAGGTCTTCTTCTAAGCATGAAAGATCAGGTATAAGCATCAAAGGAGAACATAGACATCTCATGACTTCTCAAATTGGCCAAAAGCAAAATCAATGTGTGTTTCTACCAAAATCTTCAGGTGCACCAATTCTATGTGTTGGTTGTGGAATAAGGACAGAGTTATCTATCAAGGAGTCAAATAGGTTCAGCTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTTCTTAAAGATGGACAACAAATAGCTGCAAAAGTAAGGAAAGAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCTGAAGTGTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGGTACTGTTGCAAAGAAAATAAAAATATTCTCATATATGAATATATTTGCAATAAGTCTCTTCATTGGCATTTATTTGAAAATAGTGAAGCAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGATTGCAAAGGGATTGCGTTTTCTACATGAGGAATGTCGTGGTGGTCCTATTATTCACAGGGACATGAGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTAGCTGACTTTGGCCTTGCTAAATGGAATACTGGTGATGATTCTCATCAAACAAGGATAATGGGAACATTTGGATATCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGGACAGATGTGTATTCTTATGGTGTTACTATGTTACAGTTGATATCAGGACGTCAAGTGGCCAATTTAAATAATCCAGATCAGCAACAACAATCTCTCCGACAATGGGCTGAACCAATCATGGAGAAGTTGGCTTTACATGAACTGATTGATCCTCGTTTGGGTGAATCATATGACACTTATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGTATGCAAAGAAACCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGATTTCTTGAGGGAGAAAGTTACCATTTCCATACTCTGGAAGATGAATTTGTACCAAACCATAACACTTGA

Protein sequence

>Msa0470930

MDSPPSPSCIIVACDATRDRNEHDIKLVINHVRDRGIILSSGDRLLVLCILHKVSHPMGYQTLACPESFAGTNFRAMEEEVRKKVHVYANELLSCLEDFEIQGVTIDIQVTAGFPIRQIILQEVKNYNASWIVLDRYLRRDMRFHLNKIPCNVALVKDDLSVDIWKSQNAHDKIAETKPVYSLSKFVSLSDCHSMQDIEQSIISCKSYPHSLASSDSSGTIKSYSMHSYNSSLHSRSSSKHERSGISIKGEHRHLMTSQIGQKQNQCVFLPKSSGAPILCVGCGIRTELSIKESNRFSYSEIQLATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKEESAQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSEAVLDWPQRYGIALGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLADFGLAKWNTGDDSHQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTMLQLISGRQVANLNNPDQQQQSLRQWAEPIMEKLALHELIDPRLGESYDTYELYLMAKAANFCMQRNPEMRPSMREVVRFLEGESYHFHTLEDEFVPNHNT*