AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472830 MtrunA17_Chr3g0128781 73.867 375 34 6 1 375 1 311 0.0 521
Msa0472830 MtrunA17_Chr5g0432701 40.526 380 143 11 7 375 51 358 4.53e-69 221
Msa0472830 MtrunA17_Chr3g0107491 46.875 192 61 6 7 159 38 227 3.71e-38 140
Msa0472830 MtrunA17_Chr3g0107491 46.835 158 73 5 222 375 227 377 8.34e-35 131
Msa0472830 MtrunA17_Chr6g0463571 46.591 176 69 6 7 159 28 201 1.57e-29 115
Msa0472830 MtrunA17_Chr2g0329551 37.975 237 79 8 7 185 72 298 2.59e-26 109
Msa0472830 MtrunA17_Chr4g0036071 57.732 97 40 1 90 185 341 437 5.00e-23 100
Msa0472830 MtrunA17_Chr1g0156051 70.000 50 15 0 92 141 370 419 6.38e-14 73.2
Msa0472830 MtrunA17_Chr1g0202051 33.588 131 75 2 24 154 51 169 1.06e-11 65.1
Msa0472830 MtrunA17_Chr2g0316551 57.692 52 22 0 107 158 206 257 7.94e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472830 AT2G40620.1 35.533 394 127 15 5 351 32 345 3.17e-45 159
Msa0472830 AT1G06850.2 60.606 99 36 2 78 175 116 212 2.76e-30 116
Msa0472830 AT1G06850.1 54.545 110 48 2 78 185 116 225 3.38e-29 115
Msa0472830 AT1G06850.1 40.361 166 72 4 205 364 182 326 5.12e-26 107
Msa0472830 AT1G43700.1 38.723 235 65 7 70 290 142 311 4.09e-29 115
Msa0472830 AT2G31370.5 41.206 199 66 7 7 159 58 251 2.37e-27 111
Msa0472830 AT2G31370.2 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT2G31370.4 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT2G31370.1 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT2G31370.7 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT2G31370.3 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT2G31370.6 41.206 199 66 7 7 159 58 251 2.93e-27 111
Msa0472830 AT1G06070.1 41.146 192 70 6 7 159 73 260 2.90e-26 109
Msa0472830 AT4G38900.2 62.069 87 30 1 92 178 377 460 6.63e-23 100
Msa0472830 AT4G38900.2 70.833 48 14 0 222 269 444 491 5.42e-13 70.5
Msa0472830 AT4G38900.3 62.069 87 30 1 92 178 377 460 6.63e-23 100
Msa0472830 AT4G38900.3 70.833 48 14 0 222 269 444 491 5.42e-13 70.5
Msa0472830 AT4G38900.1 58.065 93 30 2 92 178 377 466 1.13e-20 94.0
Msa0472830 AT4G38900.1 70.833 48 14 0 222 269 450 497 5.32e-13 70.9
Msa0472830 AT2G21230.2 46.032 126 66 2 66 190 328 452 1.48e-20 93.2
Msa0472830 AT2G21230.3 46.774 124 64 2 66 188 328 450 1.82e-20 93.2
Msa0472830 AT2G21230.4 47.107 121 62 2 66 185 328 447 5.24e-20 92.0
Msa0472830 AT2G21230.4 64.583 48 17 0 222 269 420 467 2.53e-11 65.5
Msa0472830 AT2G21230.1 47.107 121 62 2 66 185 328 447 5.24e-20 92.0
Msa0472830 AT2G21230.1 64.583 48 17 0 222 269 420 467 2.53e-11 65.5
Msa0472830 AT3G58120.2 43.210 81 36 1 109 189 202 272 3.82e-11 63.5
Msa0472830 AT3G58120.1 43.210 81 36 1 109 189 202 272 7.15e-11 63.2

Find 143 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTGTTCTGTACTTAA+TGG 0.146556 3_3:+75274010 Msa0472830:three_prime_UTR
TGATTCTATCGGCCAATTTC+AGG 0.184834 3_3:+75273505 Msa0472830:CDS
CATGTCACTACCCTGTTTAT+TGG 0.215779 3_3:+75273629 Msa0472830:three_prime_UTR
AACATGGTCCAAACGATCTT+AGG 0.241223 3_3:+75273375 Msa0472830:CDS
TTTGATTTGATTCAGGATTC+TGG 0.271099 3_3:+75271262 Msa0472830:intron
CAATGTCCAGCCCCTGAAAT+TGG 0.281734 3_3:-75273517 None:intergenic
ATGTCACTACCCTGTTTATT+GGG 0.283940 3_3:+75273630 Msa0472830:three_prime_UTR
GCCCACTCCACCTGTGAATA+TGG 0.284368 3_3:-75271896 None:intergenic
CACAATTGAGCAAGTTTATC+AGG 0.289271 3_3:-75271141 None:intergenic
TTTCATTCCCTCTCATCTAA+TGG 0.291764 3_3:+75273416 Msa0472830:CDS
CGTCTGTAGCGATGAGATTA+GGG 0.313339 3_3:+75271602 Msa0472830:CDS
GAGAAATGTTATTGAATAGA+AGG 0.328844 3_3:-75274035 None:intergenic
GCGTCTGTAGCGATGAGATT+AGG 0.338160 3_3:+75271601 Msa0472830:CDS
AACGTCCCAACCCTCATTAA+TGG 0.339576 3_3:-75271815 None:intergenic
TTAGACTTGAAATTAATTCA+TGG 0.342642 3_3:+75273874 Msa0472830:three_prime_UTR
GTTGCGGTGGTGGTGGATCT+TGG 0.360501 3_3:-75270960 None:intergenic
AAAGAAGGTTAAGTTCAAAA+AGG 0.362449 3_3:-75270711 None:intergenic
GAATTAATTTCAAGTCTAAC+AGG 0.366447 3_3:-75273870 None:intergenic
TAATGAGGGTTGGGACGTTA+TGG 0.370255 3_3:+75271819 Msa0472830:CDS
AGGGGCTGGACATTGGCAAC+AGG 0.370603 3_3:+75273525 Msa0472830:CDS
CTATGAACAACCCAATAAAC+AGG 0.371418 3_3:-75273640 None:intergenic
AAGCTTGAGAATATGAAAAT+TGG 0.377609 3_3:-75273331 None:intergenic
TCAAGGTACATGATCCATTA+TGG 0.378625 3_3:+75273921 Msa0472830:three_prime_UTR
TTCAATTATTTATTTGATTG+AGG 0.379194 3_3:+75273708 Msa0472830:three_prime_UTR
ATCAGAGAGGTAGGTTGAAT+TGG 0.379412 3_3:+75271572 Msa0472830:CDS
TGCATGGCCCTAAGATCGTT+TGG 0.389186 3_3:-75273383 None:intergenic
CCATGCTGATACCTATGGTT+TGG 0.391118 3_3:+75273301 Msa0472830:CDS
AAAGACCTCTTGGCGCGTTT+AGG 0.396524 3_3:-75271174 None:intergenic
GGTCGAAATCGTCGGGGATT+CGG 0.403638 3_3:-75270894 None:intergenic
GAGTTTGGATCCGGAATTAT+CGG 0.405371 3_3:-75271016 None:intergenic
TTTGCATCAAAAGGCGTTGT+TGG 0.405645 3_3:-75273597 None:intergenic
CGACGATTTCGACCTCGAAA+TGG 0.407698 3_3:+75270903 Msa0472830:CDS
TACATCGATTCCGATAATTC+CGG 0.408499 3_3:+75271006 Msa0472830:CDS
CATGCTGATACCTATGGTTT+GGG 0.409516 3_3:+75273302 Msa0472830:CDS
TTAGTAAAATTTGCATCAAA+AGG 0.417524 3_3:-75273606 None:intergenic
AAACTGAGGCTGGTGGGGAC+TGG 0.421487 3_3:-75273441 None:intergenic
TCAATTATTTATTTGATTGA+GGG 0.422899 3_3:+75273709 Msa0472830:three_prime_UTR
ACCCACTTCGTATGATTTGT+CGG 0.426091 3_3:+75273469 Msa0472830:CDS
GATTCTATCGGCCAATTTCA+GGG 0.428325 3_3:+75273506 Msa0472830:CDS
GTGGTGGTGGATCTTGGAAC+TGG 0.429585 3_3:-75270954 None:intergenic
TTGTGCATAAATGACCATAA+TGG 0.434575 3_3:-75273935 None:intergenic
TATCGGCCAATTTCAGGGGC+TGG 0.448809 3_3:+75273511 Msa0472830:CDS
CATCGTTGCGGTTACCGATC+CGG 0.453334 3_3:-75270827 None:intergenic
GATAGGCTCAAGCTTGCTAC+TGG 0.454169 3_3:+75273266 Msa0472830:CDS
ATTGAGATCGACGGTGGAAC+GGG 0.455173 3_3:-75270858 None:intergenic
CATTGAAGAACGAAGTTGAT+AGG 0.457070 3_3:+75273249 Msa0472830:CDS
ATTTCGAGGTCGAAATCGTC+GGG 0.457489 3_3:-75270901 None:intergenic
TCTCATGTTCTGATGCCTGA+TGG 0.464397 3_3:+75273551 Msa0472830:CDS
AGTTGTTGTGGCCATTAATG+AGG 0.469035 3_3:+75271804 Msa0472830:intron
TGTGGCCATTAATGAGGGTT+GGG 0.470788 3_3:+75271810 Msa0472830:CDS
GAAGACGACGGGATTCAAAC+CGG 0.472913 3_3:+75270808 Msa0472830:five_prime_UTR
GGCGGTAGGAGAATTGAGTT+TGG 0.473174 3_3:-75271031 None:intergenic
AATTGAAACAAATGTCTTCA+AGG 0.480097 3_3:+75273825 Msa0472830:three_prime_UTR
TAGCTTAGCTTGTTGCTCCA+TGG 0.487772 3_3:-75272222 None:intergenic
TGTGTGTGGGAACGTCGAAT+TGG 0.488371 3_3:+75271870 Msa0472830:CDS
CTGATAAACTTGCTCAATTG+TGG 0.489201 3_3:+75271142 Msa0472830:CDS
ACAGAAACGGAGGGACCATC+AGG 0.491647 3_3:-75273566 None:intergenic
AGGAGAATTGAGTTTGGATC+CGG 0.498325 3_3:-75271025 None:intergenic
TCATATGAAGATTCTGTTCA+AGG 0.500008 3_3:+75271842 Msa0472830:CDS
TCTTCTTCCTTGTTGTCTGA+AGG 0.501718 3_3:+75271093 Msa0472830:CDS
GGAATTGCTACGGCGGTGAC+CGG 0.503401 3_3:-75271061 None:intergenic
CCAACCCATGCTGATACCTA+TGG 0.503575 3_3:+75273296 Msa0472830:CDS
CAATTTCAGGGGCTGGACAT+TGG 0.506474 3_3:+75273518 Msa0472830:CDS
TTGTGGCCATTAATGAGGGT+TGG 0.509108 3_3:+75271809 Msa0472830:CDS
AGATCAAACTGAGGCTGGTG+GGG 0.510809 3_3:-75273446 None:intergenic
GTTCCACCGTCGATCTCAAT+CGG 0.512206 3_3:+75270861 Msa0472830:CDS
ATTATCGGAATCGATGTAAG+AGG 0.514373 3_3:-75271001 None:intergenic
ACATGGTCCAAACGATCTTA+GGG 0.515048 3_3:+75273376 Msa0472830:CDS
TAGATCAAACTGAGGCTGGT+GGG 0.518122 3_3:-75273447 None:intergenic
TCGTCGTGTTGTTGCGGTGG+TGG 0.518420 3_3:-75270970 None:intergenic
TCGTGTTGTTGCGGTGGTGG+TGG 0.524797 3_3:-75270967 None:intergenic
TCTCCTACCGCCGCTAATGC+CGG 0.526393 3_3:+75271042 Msa0472830:CDS
CATTTCGAGGTCGAAATCGT+CGG 0.531230 3_3:-75270902 None:intergenic
ATGTATCAGCGGAATTGCTA+CGG 0.531936 3_3:-75271071 None:intergenic
TTTCTTCCACGTAGTTGTTG+TGG 0.532491 3_3:+75271792 Msa0472830:intron
TATTTGATTGAGGGTGTATG+TGG 0.536816 3_3:+75273718 Msa0472830:three_prime_UTR
TGGGTAGATCAAACTGAGGC+TGG 0.537417 3_3:-75273451 None:intergenic
ACGGCGGTGACCGGCATTAG+CGG 0.537421 3_3:-75271052 None:intergenic
AAAATACCGAGTTGAAGCTT+CGG 0.538764 3_3:+75272192 Msa0472830:CDS
CGTTTGGACCATGTTGTGGT+TGG 0.540715 3_3:-75273367 None:intergenic
GTTATGTGGTTGAGCTTGAA+AGG 0.547036 3_3:+75271327 Msa0472830:CDS
CGGAGAAGCGTCGAAGTCGA+AGG 0.552256 3_3:-75270929 None:intergenic
ATGAAAATGTTGCATTTGCA+TGG 0.556228 3_3:-75273399 None:intergenic
GGGGCTGGACATTGGCAACA+GGG 0.559117 3_3:+75273526 Msa0472830:CDS
GATTGAGATCGACGGTGGAA+CGG 0.569204 3_3:-75270859 None:intergenic
CGGAATCGATGTAAGAGGAA+AGG 0.570255 3_3:-75270996 None:intergenic
AGGAGATCGTCGTGTTGTTG+CGG 0.570948 3_3:-75270976 None:intergenic
CATATGAAGATTCTGTTCAA+GGG 0.573485 3_3:+75271843 Msa0472830:CDS
AGATCGTTTGGACCATGTTG+TGG 0.576424 3_3:-75273371 None:intergenic
AGAGAGGAAAGCTTGTTATG+TGG 0.577168 3_3:+75271313 Msa0472830:CDS
GACTGGATCCATTAGATGAG+AGG 0.584227 3_3:-75273424 None:intergenic
AGTCGAAGGGATCCATTTCG+AGG 0.586525 3_3:-75270915 None:intergenic
TTGGTGCATTCCCAAACCAT+AGG 0.592111 3_3:-75273312 None:intergenic
CCGCGGCGAGGTCGAAAGAG+AGG 0.593130 3_3:+75271297 Msa0472830:CDS
GTTGTTGTGGCCATTAATGA+GGG 0.595819 3_3:+75271805 Msa0472830:intron
ACTGGATCCATTAGATGAGA+GGG 0.595904 3_3:-75273423 None:intergenic
GTAGATCAAACTGAGGCTGG+TGG 0.597370 3_3:-75273448 None:intergenic
GAATTGGACTCCATATTCAC+AGG 0.598417 3_3:+75271886 Msa0472830:CDS
TTCCGACAAATCATACGAAG+TGG 0.598591 3_3:-75273471 None:intergenic
ATTCTATCGGCCAATTTCAG+GGG 0.601347 3_3:+75273507 Msa0472830:CDS
GAAGCTTCGGTTACAAACCA+TGG 0.603767 3_3:+75272205 Msa0472830:CDS
ATGTTGTGGTTGGTGCATGA+AGG 0.606809 3_3:-75273357 None:intergenic
CAACAAGCTAAGCTATGTGA+TGG 0.613164 3_3:+75272230 Msa0472830:CDS
TTCGATTCCTTCAGACAACA+AGG 0.616363 3_3:-75271100 None:intergenic
ATTCAACCTACCTCTCTGAT+CGG 0.620440 3_3:-75271569 None:intergenic
GGAGAAGCGTCGAAGTCGAA+GGG 0.620947 3_3:-75270928 None:intergenic
ATAAATCCGATCAGAGAGGT+AGG 0.623366 3_3:+75271563 Msa0472830:CDS
TTGTAACCGAAGCTTCAACT+CGG 0.625038 3_3:-75272198 None:intergenic
AGATCGTCGTGTTGTTGCGG+TGG 0.629335 3_3:-75270973 None:intergenic
CTTGGCGCGTTTAGGATCAA+CGG 0.630373 3_3:-75271166 None:intergenic
CCTCTCTTTCGACCTCGCCG+CGG 0.634132 3_3:-75271297 None:intergenic
TCCGACAAATCATACGAAGT+GGG 0.636300 3_3:-75273470 None:intergenic
CCAAACCATAGGTATCAGCA+TGG 0.641882 3_3:-75273301 None:intergenic
TTCATGCACCAACCACAACA+TGG 0.648904 3_3:+75273359 Msa0472830:CDS
CAAGGAAGAAGATGTATCAG+CGG 0.650201 3_3:-75271082 None:intergenic
CTCTCTCACACACACTCGCG+CGG 0.652014 3_3:-75270757 None:intergenic
AATGTGATTGAAAATTGTCA+AGG 0.657322 3_3:+75273904 Msa0472830:three_prime_UTR
GGTGGATCTTGGAACTGGAG+CGG 0.658797 3_3:-75270949 None:intergenic
CGGGAACGACGACATCGTTG+CGG 0.659963 3_3:-75270839 None:intergenic
CGAATCGTCAATCCGCGGCG+AGG 0.660871 3_3:+75271285 Msa0472830:CDS
CCATAGGTATCAGCATGGGT+TGG 0.661247 3_3:-75273296 None:intergenic
CAAACCATAGGTATCAGCAT+GGG 0.662566 3_3:-75273300 None:intergenic
GTTCAAGGGAATCTGTGTGT+GGG 0.662638 3_3:+75271857 Msa0472830:CDS
TTGATCCTAAACGCGCCAAG+AGG 0.666281 3_3:+75271169 Msa0472830:CDS
GCTCAAGCTTGCTACTGGAG+AGG 0.667501 3_3:+75273271 Msa0472830:CDS
CCTCCGATTGAGATCGACGG+TGG 0.668695 3_3:-75270864 None:intergenic
CGACGGGATTCAAACCGGAT+CGG 0.671774 3_3:+75270813 Msa0472830:five_prime_UTR
TGACCGGCATTAGCGGCGGT+AGG 0.676875 3_3:-75271045 None:intergenic
ATGTTGTCAAGTGATTCTAT+CGG 0.677885 3_3:+75273494 Msa0472830:CDS
TGTTCAAGGGAATCTGTGTG+TGG 0.681982 3_3:+75271856 Msa0472830:CDS
GTCTGTAGCGATGAGATTAG+GGG 0.691568 3_3:+75271603 Msa0472830:CDS
CCACCGTCGATCTCAATCGG+AGG 0.695045 3_3:+75270864 Msa0472830:CDS
TGAAACAAATGTCTTCAAGG+TGG 0.697816 3_3:+75273828 Msa0472830:three_prime_UTR
GCGGTGACCGGCATTAGCGG+CGG 0.701383 3_3:-75271049 None:intergenic
GTACCTCCGATTGAGATCGA+CGG 0.703198 3_3:-75270867 None:intergenic
TGTAGCGATGAGATTAGGGG+TGG 0.704993 3_3:+75271606 Msa0472830:CDS
TATGAACAACCCAATAAACA+GGG 0.708468 3_3:-75273639 None:intergenic
TTTCGAGGTCGAAATCGTCG+GGG 0.718515 3_3:-75270900 None:intergenic
TCTGGCGAATCGTCAATCCG+CGG 0.722384 3_3:+75271280 Msa0472830:CDS
AGTGATAAATCCGATCAGAG+AGG 0.722453 3_3:+75271559 Msa0472830:CDS
TTGACACGAGTGAGACCCAG+AGG 0.732492 3_3:+75273664 Msa0472830:three_prime_UTR
TATCAGCGGAATTGCTACGG+CGG 0.735962 3_3:-75271068 None:intergenic
GAAGTGGGTAGATCAAACTG+AGG 0.775188 3_3:-75273455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATCTAAAAAAAC+CGG - chr3_3:75273781-75273800 None:intergenic 10.0%
!!! TAATATTTTTGATTCAACTT+AGG - chr3_3:75271430-75271449 None:intergenic 15.0%
!!! TAATTTTAGTCTCTTAAATT+TGG + chr3_3:75272415-75272434 Msa0472830:intron 15.0%
!! TTCAATTATTTATTTGATTG+AGG + chr3_3:75273708-75273727 Msa0472830:three_prime_UTR 15.0%
!! TCAATTATTTATTTGATTGA+GGG + chr3_3:75273709-75273728 Msa0472830:three_prime_UTR 15.0%
!!! AAAAAAGTACTAAATTTAAC+CGG + chr3_3:75273759-75273778 Msa0472830:three_prime_UTR 15.0%
!! AATAAGAGTGAGAATTATTT+AGG + chr3_3:75271668-75271687 Msa0472830:intron 20.0%
!! AAAAAAATAACCAAAGGATA+GGG - chr3_3:75271968-75271987 None:intergenic 20.0%
!! AAAAAAAATAACCAAAGGAT+AGG - chr3_3:75271969-75271988 None:intergenic 20.0%
!! TGGAAAAAAAAAATAACCAA+AGG - chr3_3:75271974-75271993 None:intergenic 20.0%
!!! TGGTTATTTTTTTTTTCCAT+TGG + chr3_3:75271975-75271994 Msa0472830:intron 20.0%
!!! GGTTATTTTTTTTTTCCATT+GGG + chr3_3:75271976-75271995 Msa0472830:intron 20.0%
!! ATATAAGGAATTTAACAAAC+TGG - chr3_3:75272083-75272102 None:intergenic 20.0%
!! TGTTAAATTCCTTATATTAG+TGG + chr3_3:75272086-75272105 Msa0472830:intron 20.0%
!! TATAAGTTATCTTGTAGTAT+CGG + chr3_3:75272518-75272537 Msa0472830:intron 20.0%
!! ATAGACAAAACATTAATGTT+TGG - chr3_3:75272582-75272601 None:intergenic 20.0%
!! TTAGTAAAATTTGCATCAAA+AGG - chr3_3:75273609-75273628 None:intergenic 20.0%
!!! ATTTGTTTCAATTCTTTTTG+GGG - chr3_3:75273818-75273837 None:intergenic 20.0%
!!! CATTTGTTTCAATTCTTTTT+GGG - chr3_3:75273819-75273838 None:intergenic 20.0%
!!! ACATTTGTTTCAATTCTTTT+TGG - chr3_3:75273820-75273839 None:intergenic 20.0%
!! TTAGACTTGAAATTAATTCA+TGG + chr3_3:75273874-75273893 Msa0472830:three_prime_UTR 20.0%
! AAAGAAGGTTAAGTTCAAAA+AGG - chr3_3:75270714-75270733 None:intergenic 25.0%
!! ACCTTCTTTTTATCATTGTA+AGG + chr3_3:75270725-75270744 Msa0472830:five_prime_UTR 25.0%
! TCCTTACAATGATAAAAAGA+AGG - chr3_3:75270729-75270748 None:intergenic 25.0%
! GAAAAAAAAAAAGAAGACGA+CGG + chr3_3:75270796-75270815 Msa0472830:five_prime_UTR 25.0%
! AAAAAAAAAAAGAAGACGAC+GGG + chr3_3:75270797-75270816 Msa0472830:five_prime_UTR 25.0%
! AGTTCAATTAAAGGAAACAA+AGG - chr3_3:75272054-75272073 None:intergenic 25.0%
! TTGTTTCCTTTAATTGAACT+TGG + chr3_3:75272054-75272073 Msa0472830:intron 25.0%
! TAAATTCCTTATATTAGTGG+TGG + chr3_3:75272089-75272108 Msa0472830:intron 25.0%
! AAATTCCTTATATTAGTGGT+GGG + chr3_3:75272090-75272109 Msa0472830:intron 25.0%
! TTCCATCAGTATAATATGAA+AGG + chr3_3:75272330-75272349 Msa0472830:intron 25.0%
! CATATTCTAACAGAAACTAT+AGG - chr3_3:75272460-75272479 None:intergenic 25.0%
!! TCATTGAATTGAAAAGTATG+AGG - chr3_3:75272552-75272571 None:intergenic 25.0%
! TACAGCATTTATCCTTTAAA+TGG - chr3_3:75272673-75272692 None:intergenic 25.0%
! AAAAAATTACATGTCAAACG+AGG - chr3_3:75272743-75272762 None:intergenic 25.0%
! TAGCTTACATTCTTAGTAAT+TGG + chr3_3:75272818-75272837 Msa0472830:intron 25.0%
! TTACATTCTTAGTAATTGGA+TGG + chr3_3:75272822-75272841 Msa0472830:intron 25.0%
! CAAGTAAAATAAAAACCGAA+AGG - chr3_3:75272937-75272956 None:intergenic 25.0%
!!! AAAACAGAAACACTACTTTT+AGG - chr3_3:75273127-75273146 None:intergenic 25.0%
! AAGCTTGAGAATATGAAAAT+TGG - chr3_3:75273334-75273353 None:intergenic 25.0%
!!! GTTGGTTTTATTAACAGAAA+CGG - chr3_3:75273582-75273601 None:intergenic 25.0%
! AACAAAAAATCAATACCTCT+GGG - chr3_3:75273682-75273701 None:intergenic 25.0%
! AAACAAAAAATCAATACCTC+TGG - chr3_3:75273683-75273702 None:intergenic 25.0%
! AATTGAAACAAATGTCTTCA+AGG + chr3_3:75273825-75273844 Msa0472830:three_prime_UTR 25.0%
!! GAATTAATTTCAAGTCTAAC+AGG - chr3_3:75273873-75273892 None:intergenic 25.0%
! AATGTGATTGAAAATTGTCA+AGG + chr3_3:75273904-75273923 Msa0472830:three_prime_UTR 25.0%
! TTCAATTGTTCTGTACTTAA+TGG + chr3_3:75274010-75274029 Msa0472830:three_prime_UTR 25.0%
! GAGAAATGTTATTGAATAGA+AGG - chr3_3:75274038-75274057 None:intergenic 25.0%
GTTCAAAAAGGAAATCTCTA+CGG - chr3_3:75270702-75270721 None:intergenic 30.0%
!!! GAACTTGTTTTTATAGATCG+TGG + chr3_3:75271238-75271257 Msa0472830:intron 30.0%
!! TTTGATTTGATTCAGGATTC+TGG + chr3_3:75271262-75271281 Msa0472830:intron 30.0%
! TGCTCAATTAAATCTTTTCC+AGG + chr3_3:75271388-75271407 Msa0472830:CDS 30.0%
!! TACTTGTTGTGAAGCTTAAA+TGG + chr3_3:75271509-75271528 Msa0472830:intron 30.0%
!! ACTTGTTGTGAAGCTTAAAT+GGG + chr3_3:75271510-75271529 Msa0472830:intron 30.0%
TCATATGAAGATTCTGTTCA+AGG + chr3_3:75271842-75271861 Msa0472830:CDS 30.0%
CATATGAAGATTCTGTTCAA+GGG + chr3_3:75271843-75271862 Msa0472830:CDS 30.0%
TGGGCCTTCAAAAAAAAAAA+GGG + chr3_3:75271914-75271933 Msa0472830:intron 30.0%
!!! GACTCCCTTTTTTTTTTTGA+AGG - chr3_3:75271921-75271940 None:intergenic 30.0%
!!! TTTTTTTTCCATTGGGCTAT+TGG + chr3_3:75271983-75272002 Msa0472830:intron 30.0%
!! TGGCAGTTCATTTTTCAAAA+TGG + chr3_3:75272023-75272042 Msa0472830:intron 30.0%
TGGAAACCAAGTTCAATTAA+AGG - chr3_3:75272063-75272082 None:intergenic 30.0%
TAAAGTGTAGCATATTAGCA+TGG - chr3_3:75272266-75272285 None:intergenic 30.0%
TCAGGGTTAAACTAAGTTAA+TGG - chr3_3:75272356-75272375 None:intergenic 30.0%
AGTCTCTTAAATTTGGTAGA+TGG + chr3_3:75272422-75272441 Msa0472830:intron 30.0%
GTCTCTTAAATTTGGTAGAT+GGG + chr3_3:75272423-75272442 Msa0472830:intron 30.0%
TATTAATATTTGAGCCTACG+TGG + chr3_3:75272603-75272622 Msa0472830:intron 30.0%
!! CAGCTCATTTAGTTTGTAAT+TGG - chr3_3:75272697-75272716 None:intergenic 30.0%
CAATTACAAACTAAATGAGC+TGG + chr3_3:75272695-75272714 Msa0472830:intron 30.0%
TTGGATGGTATATTAACACT+TGG + chr3_3:75272837-75272856 Msa0472830:intron 30.0%
! TTCATTCATTTGGAAAGTGT+GGG + chr3_3:75272867-75272886 Msa0472830:intron 30.0%
ATGTACAACGATTTGAAAAC+TGG - chr3_3:75273095-75273114 None:intergenic 30.0%
ATGAAAATGTTGCATTTGCA+TGG - chr3_3:75273402-75273421 None:intergenic 30.0%
ATGTTGTCAAGTGATTCTAT+CGG + chr3_3:75273494-75273513 Msa0472830:CDS 30.0%
!! GTTTTATTAACAGAAACGGA+GGG - chr3_3:75273578-75273597 None:intergenic 30.0%
TATGAACAACCCAATAAACA+GGG - chr3_3:75273642-75273661 None:intergenic 30.0%
TTGTGCATAAATGACCATAA+TGG - chr3_3:75273938-75273957 None:intergenic 30.0%
ATTATCGGAATCGATGTAAG+AGG - chr3_3:75271004-75271023 None:intergenic 35.0%
!! TACATCGATTCCGATAATTC+CGG + chr3_3:75271006-75271025 Msa0472830:CDS 35.0%
CACAATTGAGCAAGTTTATC+AGG - chr3_3:75271144-75271163 None:intergenic 35.0%
! CTGATAAACTTGCTCAATTG+TGG + chr3_3:75271142-75271161 Msa0472830:CDS 35.0%
GCATTAAAAGAAAGACCTCT+TGG - chr3_3:75271187-75271206 None:intergenic 35.0%
!! TCGTGGATTTGATTTGATTC+AGG + chr3_3:75271255-75271274 Msa0472830:intron 35.0%
TTATGGTAAACCGTTATGGA+AGG + chr3_3:75271755-75271774 Msa0472830:intron 35.0%
GTGGGCCTTCAAAAAAAAAA+AGG + chr3_3:75271913-75271932 Msa0472830:intron 35.0%
GAAATCCCACCACTAATATA+AGG - chr3_3:75272098-75272117 None:intergenic 35.0%
!!! CTTTTTCAGAGAGATACAAC+TGG + chr3_3:75272158-75272177 Msa0472830:intron 35.0%
! AAAATACCGAGTTGAAGCTT+CGG + chr3_3:75272192-75272211 Msa0472830:CDS 35.0%
GGCCTTTCATATTATACTGA+TGG - chr3_3:75272335-75272354 None:intergenic 35.0%
CCGATGCTTACATTAATTCA+GGG - chr3_3:75272373-75272392 None:intergenic 35.0%
CCCTGAATTAATGTAAGCAT+CGG + chr3_3:75272370-75272389 Msa0472830:intron 35.0%
ACCGATGCTTACATTAATTC+AGG - chr3_3:75272374-75272393 None:intergenic 35.0%
TGACATGGTAGTCCATTTAA+AGG + chr3_3:75272658-75272677 Msa0472830:intron 35.0%
TGGTCTAGACTTCATTCATT+TGG + chr3_3:75272857-75272876 Msa0472830:intron 35.0%
CTTCATTCATTTGGAAAGTG+TGG + chr3_3:75272866-75272885 Msa0472830:intron 35.0%
GAAGTAGTGATAGATGAACA+TGG - chr3_3:75273015-75273034 None:intergenic 35.0%
!!! GGTTTTGATTCATGGTTCAT+TGG - chr3_3:75273051-75273070 None:intergenic 35.0%
!!! GTAGTGAAGGTTTTGATTCA+TGG - chr3_3:75273059-75273078 None:intergenic 35.0%
ACTAGTCATTGAAGTAGTGA+AGG - chr3_3:75273072-75273091 None:intergenic 35.0%
! CATTGAAGAACGAAGTTGAT+AGG + chr3_3:75273249-75273268 Msa0472830:CDS 35.0%
TTTCATTCCCTCTCATCTAA+TGG + chr3_3:75273416-75273435 Msa0472830:CDS 35.0%
!!! GGTTTTATTAACAGAAACGG+AGG - chr3_3:75273579-75273598 None:intergenic 35.0%
ATGTCACTACCCTGTTTATT+GGG + chr3_3:75273630-75273649 Msa0472830:three_prime_UTR 35.0%
CTATGAACAACCCAATAAAC+AGG - chr3_3:75273643-75273662 None:intergenic 35.0%
! TATTTGATTGAGGGTGTATG+TGG + chr3_3:75273718-75273737 Msa0472830:three_prime_UTR 35.0%
TGAAACAAATGTCTTCAAGG+TGG + chr3_3:75273828-75273847 Msa0472830:three_prime_UTR 35.0%
TCAAGGTACATGATCCATTA+TGG + chr3_3:75273921-75273940 Msa0472830:three_prime_UTR 35.0%
GAGTTTGGATCCGGAATTAT+CGG - chr3_3:75271019-75271038 None:intergenic 40.0%
AGGAGAATTGAGTTTGGATC+CGG - chr3_3:75271028-75271047 None:intergenic 40.0%
ATGTATCAGCGGAATTGCTA+CGG - chr3_3:75271074-75271093 None:intergenic 40.0%
CAAGGAAGAAGATGTATCAG+CGG - chr3_3:75271085-75271104 None:intergenic 40.0%
! TCTTCTTCCTTGTTGTCTGA+AGG + chr3_3:75271093-75271112 Msa0472830:CDS 40.0%
TTCGATTCCTTCAGACAACA+AGG - chr3_3:75271103-75271122 None:intergenic 40.0%
!! AGAGAGGAAAGCTTGTTATG+TGG + chr3_3:75271313-75271332 Msa0472830:CDS 40.0%
GTTATGTGGTTGAGCTTGAA+AGG + chr3_3:75271327-75271346 Msa0472830:CDS 40.0%
GGCAATGATGAGTAATAACC+TGG - chr3_3:75271409-75271428 None:intergenic 40.0%
AGTGATAAATCCGATCAGAG+AGG + chr3_3:75271559-75271578 Msa0472830:CDS 40.0%
ATAAATCCGATCAGAGAGGT+AGG + chr3_3:75271563-75271582 Msa0472830:CDS 40.0%
ATTCAACCTACCTCTCTGAT+CGG - chr3_3:75271572-75271591 None:intergenic 40.0%
! ATCAGAGAGGTAGGTTGAAT+TGG + chr3_3:75271572-75271591 Msa0472830:CDS 40.0%
TACCGTTTGTGTAATGCGTA+TGG + chr3_3:75271703-75271722 Msa0472830:intron 40.0%
CACCATACGCATTACACAAA+CGG - chr3_3:75271708-75271727 None:intergenic 40.0%
! TTTGAGGTTGCCTTCCATAA+CGG - chr3_3:75271768-75271787 None:intergenic 40.0%
TTATGGAAGGCAACCTCAAA+CGG + chr3_3:75271768-75271787 Msa0472830:intron 40.0%
TTTCTTCCACGTAGTTGTTG+TGG + chr3_3:75271792-75271811 Msa0472830:intron 40.0%
AGTTGTTGTGGCCATTAATG+AGG + chr3_3:75271804-75271823 Msa0472830:intron 40.0%
GTTGTTGTGGCCATTAATGA+GGG + chr3_3:75271805-75271824 Msa0472830:intron 40.0%
GAATTGGACTCCATATTCAC+AGG + chr3_3:75271886-75271905 Msa0472830:CDS 40.0%
AAAGCAAACCAATAGCCCAA+TGG - chr3_3:75271994-75272013 None:intergenic 40.0%
!!! TGGTTTGCTTTTCACTCTTG+TGG + chr3_3:75272003-75272022 Msa0472830:intron 40.0%
TTGTAACCGAAGCTTCAACT+CGG - chr3_3:75272201-75272220 None:intergenic 40.0%
CAACAAGCTAAGCTATGTGA+TGG + chr3_3:75272230-75272249 Msa0472830:CDS 40.0%
CAGCAAAACAAGAAGAAACG+AGG - chr3_3:75272292-75272311 None:intergenic 40.0%
!!! CTCGTTTCTTCTTGTTTTGC+TGG + chr3_3:75272290-75272309 Msa0472830:intron 40.0%
! ATTTGAGCCTACGTGGATTA+TGG + chr3_3:75272610-75272629 Msa0472830:intron 40.0%
TCACAAACCATAATCCACGT+AGG - chr3_3:75272620-75272639 None:intergenic 40.0%
CTACAGTGATTGAAGCCTTT+CGG + chr3_3:75272919-75272938 Msa0472830:intron 40.0%
CAAACCATAGGTATCAGCAT+GGG - chr3_3:75273303-75273322 None:intergenic 40.0%
CATGCTGATACCTATGGTTT+GGG + chr3_3:75273302-75273321 Msa0472830:CDS 40.0%
AACATGGTCCAAACGATCTT+AGG + chr3_3:75273375-75273394 Msa0472830:CDS 40.0%
ACATGGTCCAAACGATCTTA+GGG + chr3_3:75273376-75273395 Msa0472830:CDS 40.0%
ACTGGATCCATTAGATGAGA+GGG - chr3_3:75273426-75273445 None:intergenic 40.0%
! ACCCACTTCGTATGATTTGT+CGG + chr3_3:75273469-75273488 Msa0472830:CDS 40.0%
TCCGACAAATCATACGAAGT+GGG - chr3_3:75273473-75273492 None:intergenic 40.0%
TTCCGACAAATCATACGAAG+TGG - chr3_3:75273474-75273493 None:intergenic 40.0%
TGATTCTATCGGCCAATTTC+AGG + chr3_3:75273505-75273524 Msa0472830:CDS 40.0%
GATTCTATCGGCCAATTTCA+GGG + chr3_3:75273506-75273525 Msa0472830:CDS 40.0%
ATTCTATCGGCCAATTTCAG+GGG + chr3_3:75273507-75273526 Msa0472830:CDS 40.0%
!! TTTGCATCAAAAGGCGTTGT+TGG - chr3_3:75273600-75273619 None:intergenic 40.0%
CATGTCACTACCCTGTTTAT+TGG + chr3_3:75273629-75273648 Msa0472830:three_prime_UTR 40.0%
ATTTCGAGGTCGAAATCGTC+GGG - chr3_3:75270904-75270923 None:intergenic 45.0%
CATTTCGAGGTCGAAATCGT+CGG - chr3_3:75270905-75270924 None:intergenic 45.0%
CGGAATCGATGTAAGAGGAA+AGG - chr3_3:75270999-75271018 None:intergenic 45.0%
CGTCTGTAGCGATGAGATTA+GGG + chr3_3:75271602-75271621 Msa0472830:CDS 45.0%
GTCTGTAGCGATGAGATTAG+GGG + chr3_3:75271603-75271622 Msa0472830:CDS 45.0%
AGCACTCTGACGCTTAAGTT+AGG + chr3_3:75271637-75271656 Msa0472830:intron 45.0%
GCACTCTGACGCTTAAGTTA+GGG + chr3_3:75271638-75271657 Msa0472830:intron 45.0%
GGGGTTATGGTAAACCGTTA+TGG + chr3_3:75271751-75271770 Msa0472830:intron 45.0%
ACGTGGAAGAAATCCGTTTG+AGG - chr3_3:75271784-75271803 None:intergenic 45.0%
TAATGGCCACAACAACTACG+TGG - chr3_3:75271801-75271820 None:intergenic 45.0%
TTGTGGCCATTAATGAGGGT+TGG + chr3_3:75271809-75271828 Msa0472830:CDS 45.0%
TGTGGCCATTAATGAGGGTT+GGG + chr3_3:75271810-75271829 Msa0472830:CDS 45.0%
AACGTCCCAACCCTCATTAA+TGG - chr3_3:75271818-75271837 None:intergenic 45.0%
TAATGAGGGTTGGGACGTTA+TGG + chr3_3:75271819-75271838 Msa0472830:CDS 45.0%
TGTTCAAGGGAATCTGTGTG+TGG + chr3_3:75271856-75271875 Msa0472830:CDS 45.0%
GTTCAAGGGAATCTGTGTGT+GGG + chr3_3:75271857-75271876 Msa0472830:CDS 45.0%
TTGGACTCCATATTCACAGG+TGG + chr3_3:75271889-75271908 Msa0472830:intron 45.0%
TCCATATTCACAGGTGGAGT+GGG + chr3_3:75271895-75271914 Msa0472830:intron 45.0%
! ATAGGGCAACTGTTCTGGAT+TGG - chr3_3:75271951-75271970 None:intergenic 45.0%
AAAGGATAGGGCAACTGTTC+TGG - chr3_3:75271956-75271975 None:intergenic 45.0%
AGAACAGTTGCCCTATCCTT+TGG + chr3_3:75271955-75271974 Msa0472830:intron 45.0%
GAAGCTTCGGTTACAAACCA+TGG + chr3_3:75272205-75272224 Msa0472830:CDS 45.0%
!! TAGCTTAGCTTGTTGCTCCA+TGG - chr3_3:75272225-75272244 None:intergenic 45.0%
GTCAACTGTCTCAGATGACA+TGG + chr3_3:75272643-75272662 Msa0472830:intron 45.0%
CCAAACCATAGGTATCAGCA+TGG - chr3_3:75273304-75273323 None:intergenic 45.0%
CCATGCTGATACCTATGGTT+TGG + chr3_3:75273301-75273320 Msa0472830:CDS 45.0%
TTGGTGCATTCCCAAACCAT+AGG - chr3_3:75273315-75273334 None:intergenic 45.0%
! ATGTTGTGGTTGGTGCATGA+AGG - chr3_3:75273360-75273379 None:intergenic 45.0%
TTCATGCACCAACCACAACA+TGG + chr3_3:75273359-75273378 Msa0472830:CDS 45.0%
AGATCGTTTGGACCATGTTG+TGG - chr3_3:75273374-75273393 None:intergenic 45.0%
GACTGGATCCATTAGATGAG+AGG - chr3_3:75273427-75273446 None:intergenic 45.0%
TAGATCAAACTGAGGCTGGT+GGG - chr3_3:75273450-75273469 None:intergenic 45.0%
GAAGTGGGTAGATCAAACTG+AGG - chr3_3:75273458-75273477 None:intergenic 45.0%
TCTCATGTTCTGATGCCTGA+TGG + chr3_3:75273551-75273570 Msa0472830:CDS 45.0%
!!! ATAATTATTATTTTTAAAAC+TGG - chr3_3:75273203-75273222 None:intergenic 5.0%
TGTGAGAGAGAGAGAGAGAG+CGG + chr3_3:75270770-75270789 Msa0472830:five_prime_UTR 50.0%
GAAGACGACGGGATTCAAAC+CGG + chr3_3:75270808-75270827 Msa0472830:five_prime_UTR 50.0%
ATTGAGATCGACGGTGGAAC+GGG - chr3_3:75270861-75270880 None:intergenic 50.0%
GATTGAGATCGACGGTGGAA+CGG - chr3_3:75270862-75270881 None:intergenic 50.0%
GTTCCACCGTCGATCTCAAT+CGG + chr3_3:75270861-75270880 Msa0472830:CDS 50.0%
GTACCTCCGATTGAGATCGA+CGG - chr3_3:75270870-75270889 None:intergenic 50.0%
TTTCGAGGTCGAAATCGTCG+GGG - chr3_3:75270903-75270922 None:intergenic 50.0%
CGACGATTTCGACCTCGAAA+TGG + chr3_3:75270903-75270922 Msa0472830:CDS 50.0%
AGTCGAAGGGATCCATTTCG+AGG - chr3_3:75270918-75270937 None:intergenic 50.0%
! AGGAGATCGTCGTGTTGTTG+CGG - chr3_3:75270979-75270998 None:intergenic 50.0%
GGCGGTAGGAGAATTGAGTT+TGG - chr3_3:75271034-75271053 None:intergenic 50.0%
TATCAGCGGAATTGCTACGG+CGG - chr3_3:75271071-75271090 None:intergenic 50.0%
! CTTGGCGCGTTTAGGATCAA+CGG - chr3_3:75271169-75271188 None:intergenic 50.0%
TTGATCCTAAACGCGCCAAG+AGG + chr3_3:75271169-75271188 Msa0472830:CDS 50.0%
AAAGACCTCTTGGCGCGTTT+AGG - chr3_3:75271177-75271196 None:intergenic 50.0%
GCGTCTGTAGCGATGAGATT+AGG + chr3_3:75271601-75271620 Msa0472830:CDS 50.0%
TGTAGCGATGAGATTAGGGG+TGG + chr3_3:75271606-75271625 Msa0472830:CDS 50.0%
GCGTATGGTGCATATGTCGA+AGG + chr3_3:75271718-75271737 Msa0472830:intron 50.0%
GCATATGTCGAAGGAATCCC+AGG + chr3_3:75271727-75271746 Msa0472830:intron 50.0%
TATGTCGAAGGAATCCCAGG+AGG + chr3_3:75271730-75271749 Msa0472830:intron 50.0%
ATGTCGAAGGAATCCCAGGA+GGG + chr3_3:75271731-75271750 Msa0472830:intron 50.0%
GGTTTACCATAACCCCTCCT+GGG - chr3_3:75271747-75271766 None:intergenic 50.0%
TGTGTGTGGGAACGTCGAAT+TGG + chr3_3:75271870-75271889 Msa0472830:CDS 50.0%
CTCCATATTCACAGGTGGAG+TGG + chr3_3:75271894-75271913 Msa0472830:intron 50.0%
TGCAACGACTTGAGCTGACA+TGG - chr3_3:75272775-75272794 None:intergenic 50.0%
!! GATAGGCTCAAGCTTGCTAC+TGG + chr3_3:75273266-75273285 Msa0472830:CDS 50.0%
CCATAGGTATCAGCATGGGT+TGG - chr3_3:75273299-75273318 None:intergenic 50.0%
CCAACCCATGCTGATACCTA+TGG + chr3_3:75273296-75273315 Msa0472830:CDS 50.0%
CGTTTGGACCATGTTGTGGT+TGG - chr3_3:75273370-75273389 None:intergenic 50.0%
TGCATGGCCCTAAGATCGTT+TGG - chr3_3:75273386-75273405 None:intergenic 50.0%
AGATCAAACTGAGGCTGGTG+GGG - chr3_3:75273449-75273468 None:intergenic 50.0%
GTAGATCAAACTGAGGCTGG+TGG - chr3_3:75273451-75273470 None:intergenic 50.0%
TGGGTAGATCAAACTGAGGC+TGG - chr3_3:75273454-75273473 None:intergenic 50.0%
CAATGTCCAGCCCCTGAAAT+TGG - chr3_3:75273520-75273539 None:intergenic 50.0%
CAATTTCAGGGGCTGGACAT+TGG + chr3_3:75273518-75273537 Msa0472830:CDS 50.0%
CGACGGGATTCAAACCGGAT+CGG + chr3_3:75270813-75270832 Msa0472830:five_prime_UTR 55.0%
CATCGTTGCGGTTACCGATC+CGG - chr3_3:75270830-75270849 None:intergenic 55.0%
GGTCGAAATCGTCGGGGATT+CGG - chr3_3:75270897-75270916 None:intergenic 55.0%
!! GGAGAAGCGTCGAAGTCGAA+GGG - chr3_3:75270931-75270950 None:intergenic 55.0%
GGTGGATCTTGGAACTGGAG+CGG - chr3_3:75270952-75270971 None:intergenic 55.0%
!! GTGGTGGTGGATCTTGGAAC+TGG - chr3_3:75270957-75270976 None:intergenic 55.0%
! AGATCGTCGTGTTGTTGCGG+TGG - chr3_3:75270976-75270995 None:intergenic 55.0%
TCTGGCGAATCGTCAATCCG+CGG + chr3_3:75271280-75271299 Msa0472830:CDS 55.0%
TGTCGAAGGAATCCCAGGAG+GGG + chr3_3:75271732-75271751 Msa0472830:intron 55.0%
AGGAATCCCAGGAGGGGTTA+TGG + chr3_3:75271738-75271757 Msa0472830:intron 55.0%
CGGTTTACCATAACCCCTCC+TGG - chr3_3:75271748-75271767 None:intergenic 55.0%
GCCCACTCCACCTGTGAATA+TGG - chr3_3:75271899-75271918 None:intergenic 55.0%
!! GCTCAAGCTTGCTACTGGAG+AGG + chr3_3:75273271-75273290 Msa0472830:CDS 55.0%
TATCGGCCAATTTCAGGGGC+TGG + chr3_3:75273511-75273530 Msa0472830:CDS 55.0%
ACAGAAACGGAGGGACCATC+AGG - chr3_3:75273569-75273588 None:intergenic 55.0%
TTGACACGAGTGAGACCCAG+AGG + chr3_3:75273664-75273683 Msa0472830:three_prime_UTR 55.0%
CTCTCTCACACACACTCGCG+CGG - chr3_3:75270760-75270779 None:intergenic 60.0%
CGGGAACGACGACATCGTTG+CGG - chr3_3:75270842-75270861 None:intergenic 60.0%
CCTCCGATTGAGATCGACGG+TGG - chr3_3:75270867-75270886 None:intergenic 60.0%
CCACCGTCGATCTCAATCGG+AGG + chr3_3:75270864-75270883 Msa0472830:CDS 60.0%
!! CGGAGAAGCGTCGAAGTCGA+AGG - chr3_3:75270932-75270951 None:intergenic 60.0%
!! GTTGCGGTGGTGGTGGATCT+TGG - chr3_3:75270963-75270982 None:intergenic 60.0%
! TCGTGTTGTTGCGGTGGTGG+TGG - chr3_3:75270970-75270989 None:intergenic 60.0%
! TCGTCGTGTTGTTGCGGTGG+TGG - chr3_3:75270973-75270992 None:intergenic 60.0%
TCTCCTACCGCCGCTAATGC+CGG + chr3_3:75271042-75271061 Msa0472830:CDS 60.0%
GGAATTGCTACGGCGGTGAC+CGG - chr3_3:75271064-75271083 None:intergenic 60.0%
AAACTGAGGCTGGTGGGGAC+TGG - chr3_3:75273444-75273463 None:intergenic 60.0%
AGGGGCTGGACATTGGCAAC+AGG + chr3_3:75273525-75273544 Msa0472830:CDS 60.0%
GGGGCTGGACATTGGCAACA+GGG + chr3_3:75273526-75273545 Msa0472830:CDS 60.0%
TGACCGGCATTAGCGGCGGT+AGG - chr3_3:75271048-75271067 None:intergenic 65.0%
ACGGCGGTGACCGGCATTAG+CGG - chr3_3:75271055-75271074 None:intergenic 65.0%
CGAATCGTCAATCCGCGGCG+AGG + chr3_3:75271285-75271304 Msa0472830:CDS 65.0%
CCTCTCTTTCGACCTCGCCG+CGG - chr3_3:75271300-75271319 None:intergenic 65.0%
GCGGTGACCGGCATTAGCGG+CGG - chr3_3:75271052-75271071 None:intergenic 70.0%
CCGCGGCGAGGTCGAAAGAG+AGG + chr3_3:75271297-75271316 Msa0472830:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75270666 75274063 75270666 ID=Msa0472830;Name=Msa0472830
chr3_3 mRNA 75270666 75274063 75270666 ID=Msa0472830-mRNA-1;Parent=Msa0472830;Name=Msa0472830-mRNA-1;_AED=0.09;_eAED=0.11;_QI=181|0.4|0.66|1|1|1|6|450|375
chr3_3 exon 75270666 75271190 75270666 ID=Msa0472830-mRNA-1:exon:19467;Parent=Msa0472830-mRNA-1
chr3_3 exon 75271277 75271409 75271277 ID=Msa0472830-mRNA-1:exon:19468;Parent=Msa0472830-mRNA-1
chr3_3 exon 75271541 75271627 75271541 ID=Msa0472830-mRNA-1:exon:19469;Parent=Msa0472830-mRNA-1
chr3_3 exon 75271806 75271907 75271806 ID=Msa0472830-mRNA-1:exon:19470;Parent=Msa0472830-mRNA-1
chr3_3 exon 75272167 75272251 75272167 ID=Msa0472830-mRNA-1:exon:19471;Parent=Msa0472830-mRNA-1
chr3_3 exon 75273237 75274063 75273237 ID=Msa0472830-mRNA-1:exon:19472;Parent=Msa0472830-mRNA-1
chr3_3 five_prime_UTR 75270666 75270846 75270666 ID=Msa0472830-mRNA-1:five_prime_utr;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75270847 75271190 75270847 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75271277 75271409 75271277 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75271541 75271627 75271541 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75271806 75271907 75271806 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75272167 75272251 75272167 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 CDS 75273237 75273613 75273237 ID=Msa0472830-mRNA-1:cds;Parent=Msa0472830-mRNA-1
chr3_3 three_prime_UTR 75273614 75274063 75273614 ID=Msa0472830-mRNA-1:three_prime_utr;Parent=Msa0472830-mRNA-1
Gene Sequence

>Msa0472830

ATGTCGTCGTTCCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGATTTCGACCTCGAAATGGATCCCTTCGACTTCGACGCTTCTCCGCTCCAGTTCCAAGATCCACCACCACCGCAACAACACGACGATCTCCTTTCCTCTTACATCGATTCCGATAATTCCGGATCCAAACTCAATTCTCCTACCGCCGCTAATGCCGGTCACCGCCGTAGCAATTCCGCTGATACATCTTCTTCCTTGTTGTCTGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTTGCTCAATTGTGGACCGTTGATCCTAAACGCGCCAAGAGGATTCTGGCGAATCGTCAATCCGCGGCGAGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGGAAAATTCATACTCTTCAAACTGAAGCAACTACTCTTTCTGCTCAATTAAATCTTTTCCAGTTAATGTCAAGAATAGTAAGTGATAAATCCGATCAGAGAGGTAGGTTGAATTGGAGAGAAGCGTCTGTAGCGATGAGATTAGGGGTGTTGTTGTGGCCATTAATGAGGGTTGGGACGTTATGGTCATATGAAGATTCTGTTCAAGGGAATCTGTGTGTGGGAACGTCGAATTGGACTCCATATTCACAGAGAGATACAACTGGTCTGTCAAGTGAAAATACCGAGTTGAAGCTTCGGTTACAAACCATGGAGCAACAAGCTAAGCTATGTGATGCTCTAAATGAAGCATTGAAGAACGAAGTTGATAGGCTCAAGCTTGCTACTGGAGAGGTACCAACCCATGCTGATACCTATGGTTTGGGAATGCACCAATTTTCATATTCTCAAGCTTCATCCTTCATGCACCAACCACAACATGGTCCAAACGATCTTAGGGCCATGCAAATGCAACATTTTCATTCCCTCTCATCTAATGGATCCAGTCCCCACCAGCCTCAGTTTGATCTACCCACTTCGTATGATTTGTCGGAAATGTTGTCAAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATTGGCAACAGGGTTTCTCATGTTCTGATGCCTGATGGTCCCTCCGTTTCTGTTAATAAAACCAACAACGCCTTTTGA
Protein sequence

>Msa0472830

MSSFPFHRRSQSEVHFRIPDDFDLEMDPFDFDASPLQFQDPPPPQQHDDLLSSYIDSDNSGSKLNSPTAANAGHRRSNSADTSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQLMSRIVSDKSDQRGRLNWREASVAMRLGVLLWPLMRVGTLWSYEDSVQGNLCVGTSNWTPYSQRDTTGLSSENTELKLRLQTMEQQAKLCDALNEALKNEVDRLKLATGEVPTHADTYGLGMHQFSYSQASSFMHQPQHGPNDLRAMQMQHFHSLSSNGSSPHQPQFDLPTSYDLSEMLSSDSIGQFQGLDIGNRVSHVLMPDGPSVSVNKTNNAF*