Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474810 | RHN70095.1 | 88.650 | 326 | 23 | 2 | 1 | 312 | 7 | 332 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474810 | sp|Q8L3W1|VRN1_ARATH | 27.826 | 345 | 168 | 10 | 10 | 283 | 2 | 336 | 7.83e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474810 | A0A396J148 | 88.650 | 326 | 23 | 2 | 1 | 312 | 7 | 332 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0474810 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474810 | MtrunA17_Chr3g0131891 | 88.650 | 326 | 23 | 2 | 1 | 312 | 7 | 332 | 0.0 | 591 |
| Msa0474810 | MtrunA17_Chr7g0233561 | 63.580 | 324 | 94 | 4 | 1 | 300 | 6 | 329 | 2.53e-143 | 407 |
| Msa0474810 | MtrunA17_Chr7g0233531 | 67.972 | 281 | 81 | 3 | 28 | 300 | 1 | 280 | 7.12e-129 | 368 |
| Msa0474810 | MtrunA17_Chr7g0233541 | 63.973 | 297 | 83 | 6 | 28 | 300 | 1 | 297 | 1.16e-123 | 356 |
| Msa0474810 | MtrunA17_Chr7g0233521 | 59.322 | 295 | 83 | 6 | 28 | 300 | 1 | 280 | 1.40e-110 | 322 |
| Msa0474810 | MtrunA17_Chr7g0233571 | 59.361 | 219 | 61 | 6 | 1 | 194 | 1 | 216 | 3.81e-77 | 234 |
| Msa0474810 | MtrunA17_Chr8g0390841 | 33.333 | 327 | 168 | 11 | 11 | 301 | 37 | 349 | 1.53e-43 | 156 |
| Msa0474810 | MtrunA17_Chr1g0163071 | 33.993 | 303 | 137 | 9 | 28 | 283 | 1 | 287 | 5.85e-42 | 147 |
| Msa0474810 | MtrunA17_Chr1g0208771 | 30.476 | 315 | 159 | 11 | 29 | 301 | 13 | 309 | 9.30e-39 | 142 |
| Msa0474810 | MtrunA17_Chr3g0103181 | 31.164 | 292 | 161 | 10 | 10 | 282 | 9 | 279 | 3.31e-34 | 126 |
| Msa0474810 | MtrunA17_Chr1g0171611 | 31.071 | 280 | 165 | 9 | 10 | 281 | 6 | 265 | 2.13e-28 | 110 |
| Msa0474810 | MtrunA17_Chr1g0163231 | 27.972 | 286 | 178 | 8 | 10 | 281 | 6 | 277 | 2.20e-27 | 108 |
| Msa0474810 | MtrunA17_Chr1g0163181 | 30.526 | 285 | 166 | 9 | 22 | 281 | 14 | 291 | 6.58e-27 | 109 |
| Msa0474810 | MtrunA17_Chr4g0067431 | 29.739 | 306 | 174 | 11 | 11 | 282 | 13 | 311 | 5.41e-26 | 105 |
| Msa0474810 | MtrunA17_Chr1g0154161 | 29.252 | 294 | 188 | 9 | 11 | 291 | 28 | 314 | 8.18e-26 | 104 |
| Msa0474810 | MtrunA17_Chr1g0163261 | 28.754 | 313 | 193 | 10 | 10 | 307 | 6 | 303 | 2.21e-24 | 100 |
| Msa0474810 | MtrunA17_Chr1g0163221 | 27.682 | 289 | 185 | 8 | 11 | 282 | 9 | 290 | 1.20e-23 | 99.4 |
| Msa0474810 | MtrunA17_Chr3g0077451 | 25.670 | 261 | 160 | 5 | 27 | 286 | 10 | 237 | 3.51e-23 | 95.9 |
| Msa0474810 | MtrunA17_Chr3g0103151 | 45.545 | 101 | 47 | 2 | 10 | 104 | 9 | 107 | 1.38e-22 | 92.0 |
| Msa0474810 | MtrunA17_Chr3g0103191 | 44.554 | 101 | 48 | 2 | 10 | 104 | 9 | 107 | 3.65e-22 | 93.2 |
| Msa0474810 | MtrunA17_Chr3g0103171 | 27.306 | 271 | 169 | 9 | 29 | 282 | 6 | 265 | 5.22e-22 | 93.2 |
| Msa0474810 | MtrunA17_Chr1g0163251 | 30.797 | 276 | 164 | 9 | 22 | 281 | 14 | 278 | 1.82e-20 | 90.9 |
| Msa0474810 | MtrunA17_Chr1g0154131 | 26.837 | 313 | 181 | 10 | 11 | 290 | 177 | 474 | 4.76e-20 | 90.1 |
| Msa0474810 | MtrunA17_Chr1g0154171 | 24.545 | 330 | 183 | 9 | 11 | 282 | 21 | 342 | 3.09e-19 | 87.0 |
| Msa0474810 | MtrunA17_Chr5g0419201 | 36.364 | 110 | 59 | 2 | 13 | 111 | 16 | 125 | 1.02e-18 | 82.4 |
| Msa0474810 | MtrunA17_Chr1g0163201 | 29.856 | 278 | 161 | 10 | 29 | 283 | 19 | 285 | 1.50e-18 | 85.5 |
| Msa0474810 | MtrunA17_Chr3g0077411 | 24.823 | 282 | 177 | 8 | 11 | 282 | 260 | 516 | 1.55e-18 | 85.9 |
| Msa0474810 | MtrunA17_Chr3g0077411 | 26.154 | 260 | 144 | 9 | 12 | 270 | 24 | 236 | 1.59e-14 | 73.9 |
| Msa0474810 | MtrunA17_Chr3g0077461 | 27.925 | 265 | 140 | 8 | 12 | 270 | 236 | 455 | 2.67e-18 | 85.1 |
| Msa0474810 | MtrunA17_Chr3g0077461 | 26.531 | 245 | 121 | 10 | 29 | 270 | 23 | 211 | 2.14e-11 | 64.3 |
| Msa0474810 | MtrunA17_Chr4g0033961 | 38.168 | 131 | 69 | 3 | 164 | 288 | 269 | 393 | 4.18e-18 | 84.3 |
| Msa0474810 | MtrunA17_Chr4g0033961 | 33.036 | 112 | 67 | 1 | 13 | 116 | 6 | 117 | 2.73e-14 | 73.2 |
| Msa0474810 | MtrunA17_Chr1g0154041 | 25.833 | 360 | 183 | 14 | 6 | 292 | 9 | 357 | 5.06e-18 | 84.3 |
| Msa0474810 | MtrunA17_Chr5g0429931 | 26.054 | 261 | 164 | 8 | 29 | 286 | 11 | 245 | 8.72e-18 | 81.3 |
| Msa0474810 | MtrunA17_Chr1g0162441 | 37.594 | 133 | 71 | 3 | 164 | 290 | 273 | 399 | 1.80e-17 | 82.4 |
| Msa0474810 | MtrunA17_Chr1g0162441 | 36.471 | 85 | 54 | 0 | 13 | 97 | 7 | 91 | 5.46e-14 | 72.0 |
| Msa0474810 | MtrunA17_Chr3g0077431 | 26.407 | 231 | 136 | 5 | 57 | 286 | 1 | 198 | 3.14e-16 | 75.9 |
| Msa0474810 | MtrunA17_Chr3g0077361 | 25.000 | 260 | 149 | 8 | 12 | 270 | 39 | 253 | 4.04e-14 | 72.8 |
| Msa0474810 | MtrunA17_Chr6g0467351 | 32.847 | 137 | 78 | 3 | 11 | 140 | 13 | 142 | 7.87e-14 | 69.7 |
| Msa0474810 | MtrunA17_Chr1g0163101 | 33.077 | 130 | 76 | 4 | 8 | 129 | 12 | 138 | 1.56e-13 | 67.8 |
| Msa0474810 | MtrunA17_Chr3g0077421 | 27.778 | 234 | 130 | 8 | 57 | 286 | 1 | 199 | 6.49e-13 | 66.6 |
| Msa0474810 | MtrunA17_Chr3g0077441 | 27.778 | 234 | 130 | 8 | 57 | 286 | 1 | 199 | 6.49e-13 | 66.6 |
| Msa0474810 | MtrunA17_Chr1g0163061 | 39.423 | 104 | 56 | 2 | 11 | 107 | 13 | 116 | 2.63e-12 | 65.9 |
| Msa0474810 | MtrunA17_Chr1g0163111 | 36.522 | 115 | 66 | 4 | 171 | 283 | 2 | 111 | 2.65e-12 | 65.5 |
| Msa0474810 | MtrunA17_Chr1g0154101 | 34.091 | 88 | 58 | 0 | 11 | 98 | 23 | 110 | 6.83e-12 | 66.2 |
| Msa0474810 | MtrunA17_Chr1g0154251 | 32.955 | 88 | 58 | 1 | 11 | 98 | 25 | 111 | 6.85e-12 | 65.9 |
| Msa0474810 | MtrunA17_Chr4g0009491 | 25.446 | 224 | 133 | 6 | 12 | 229 | 224 | 419 | 1.01e-11 | 65.1 |
| Msa0474810 | MtrunA17_Chr1g0163241 | 35.849 | 106 | 60 | 2 | 29 | 128 | 23 | 126 | 2.30e-11 | 61.6 |
| Msa0474810 | MtrunA17_Chr1g0163091 | 35.922 | 103 | 61 | 3 | 181 | 283 | 22 | 119 | 3.44e-11 | 60.8 |
| Msa0474810 | MtrunA17_Chr1g0154211 | 31.818 | 88 | 59 | 1 | 11 | 98 | 21 | 107 | 4.82e-11 | 63.2 |
| Msa0474810 | MtrunA17_Chr1g0162411 | 35.294 | 85 | 55 | 0 | 13 | 97 | 7 | 91 | 5.14e-11 | 63.2 |
| Msa0474810 | MtrunA17_Chr1g0163191 | 42.105 | 76 | 42 | 1 | 22 | 97 | 14 | 87 | 5.51e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474810 | AT3G18990.2 | 27.874 | 348 | 170 | 10 | 10 | 286 | 2 | 339 | 7.53e-30 | 117 |
| Msa0474810 | AT3G18990.1 | 27.826 | 345 | 168 | 10 | 10 | 283 | 2 | 336 | 7.96e-30 | 116 |
| Msa0474810 | AT4G33280.1 | 28.615 | 325 | 171 | 13 | 11 | 289 | 18 | 327 | 2.05e-17 | 82.0 |
| Msa0474810 | AT4G01580.1 | 36.538 | 104 | 60 | 1 | 13 | 110 | 30 | 133 | 7.86e-16 | 74.7 |
| Msa0474810 | AT1G49475.1 | 35.185 | 108 | 63 | 2 | 13 | 114 | 34 | 140 | 5.79e-15 | 72.4 |
| Msa0474810 | AT3G18960.2 | 35.577 | 104 | 61 | 1 | 13 | 110 | 30 | 133 | 6.97e-15 | 72.4 |
| Msa0474810 | AT3G18960.1 | 35.577 | 104 | 61 | 1 | 13 | 110 | 30 | 133 | 8.04e-15 | 72.4 |
| Msa0474810 | AT3G18960.3 | 37.500 | 88 | 49 | 1 | 29 | 110 | 9 | 96 | 6.20e-12 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3_3:+77867462 | Msa0474810:CDS |
| CATATCAAAGTAAGATTAAT+TGG | 0.187322 | 3_3:+77869258 | Msa0474810:CDS |
| TATTTCTCCACAAGCTTTCT+TGG | 0.203077 | 3_3:-77867394 | None:intergenic |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3_3:+77867733 | Msa0474810:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3_3:-77867591 | None:intergenic |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3_3:+77869204 | Msa0474810:CDS |
| GACAAGAGTTGAAGCTAAAA+AGG | 0.273172 | 3_3:+77867645 | Msa0474810:CDS |
| TATGTTAAGCTACTTCTTCA+TGG | 0.302623 | 3_3:+77866484 | None:intergenic |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3_3:+77867449 | Msa0474810:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3_3:-77867454 | None:intergenic |
| AGAAAGCTTGTGGAGAAATA+TGG | 0.315667 | 3_3:+77867397 | Msa0474810:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3_3:-77868587 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3_3:-77869065 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3_3:-77867691 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3_3:+77869042 | Msa0474810:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3_3:+77869063 | Msa0474810:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3_3:+77867495 | Msa0474810:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3_3:+77868545 | Msa0474810:CDS |
| GCAGTAGTTGTGTTAATGTT+CGG | 0.444915 | 3_3:+77867758 | Msa0474810:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3_3:+77868546 | Msa0474810:CDS |
| TTACAAGCTTTCCTTGATGA+AGG | 0.456239 | 3_3:-77866565 | None:intergenic |
| TTAGCTTCAACTCTTGTCAA+AGG | 0.484921 | 3_3:-77867640 | None:intergenic |
| ATGATCTTGAAGAAGTGAAC+TGG | 0.487555 | 3_3:-77866530 | None:intergenic |
| TAGCTTCAACTCTTGTCAAA+GGG | 0.493656 | 3_3:-77867639 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3_3:-77867797 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3_3:+77869140 | Msa0474810:CDS |
| ACATGTGTAAAGACTCCAAA+TGG | 0.500501 | 3_3:+77867439 | Msa0474810:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3_3:-77869208 | None:intergenic |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3_3:+77867798 | Msa0474810:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3_3:+77867606 | Msa0474810:intron |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3_3:+77867500 | Msa0474810:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3_3:+77867805 | Msa0474810:CDS |
| TAATGTTCGGAAATTTCAAA+AGG | 0.529933 | 3_3:+77867771 | Msa0474810:CDS |
| CTGTGTGGGACATCCTGATT+CGG | 0.531424 | 3_3:-77869076 | None:intergenic |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3_3:+77868972 | Msa0474810:intron |
| GGACTAAGATTTGAACTCTC+AGG | 0.534942 | 3_3:+77869098 | Msa0474810:CDS |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3_3:+77867496 | Msa0474810:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3_3:+77869205 | Msa0474810:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3_3:-77867743 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3_3:+77867799 | Msa0474810:CDS |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3_3:-77867623 | None:intergenic |
| GATTTGAACTCTCAGGTGGA+TGG | 0.563558 | 3_3:+77869105 | Msa0474810:CDS |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3_3:-77868546 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3_3:+77867535 | Msa0474810:CDS |
| CTTACTCAAAACCTTCATCA+AGG | 0.582547 | 3_3:+77866554 | Msa0474810:CDS |
| GATGATGCCAAGAAAGCTTG+TGG | 0.596116 | 3_3:+77867387 | Msa0474810:intron |
| TTCAAATCTTAGTCCTGTGT+GGG | 0.598172 | 3_3:-77869090 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3_3:+77869005 | Msa0474810:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3_3:-77867740 | None:intergenic |
| CTAAGATTTGAACTCTCAGG+TGG | 0.618080 | 3_3:+77869101 | Msa0474810:CDS |
| GTTCAAATCTTAGTCCTGTG+TGG | 0.647989 | 3_3:-77869091 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3_3:-77868981 | None:intergenic |
| CGAATCAGGATGTCCCACAC+AGG | 0.680142 | 3_3:+77869077 | Msa0474810:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3_3:-77868550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATATTAAAAAACATAAAA+AGG | - | chr3_3:77866726-77866745 | None:intergenic | 10.0% |
| !! | ATCTGTAATATAAATTATTT+AGG | - | chr3_3:77867119-77867138 | None:intergenic | 10.0% |
| !!! | ATTAATCTGGTTTAATTAAT+TGG | + | chr3_3:77867362-77867381 | Msa0474810:intron | 15.0% |
| !! | TGTAAATTGGAAATTAAATT+TGG | + | chr3_3:77867462-77867481 | Msa0474810:CDS | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | + | chr3_3:77867895-77867914 | Msa0474810:intron | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | + | chr3_3:77868024-77868043 | Msa0474810:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | + | chr3_3:77868144-77868163 | Msa0474810:intron | 15.0% |
| !! | TGACATTTATATCAATATGA+TGG | - | chr3_3:77866995-77867014 | None:intergenic | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr3_3:77867475-77867494 | Msa0474810:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | - | chr3_3:77867567-77867586 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | + | chr3_3:77868061-77868080 | Msa0474810:intron | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | - | chr3_3:77868380-77868399 | None:intergenic | 20.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | + | chr3_3:77868431-77868450 | Msa0474810:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | + | chr3_3:77868675-77868694 | Msa0474810:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | - | chr3_3:77868680-77868699 | None:intergenic | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | + | chr3_3:77869258-77869277 | Msa0474810:CDS | 20.0% |
| ! | GAACAATCTATAACTCAAAT+TGG | - | chr3_3:77866592-77866611 | None:intergenic | 25.0% |
| !! | TGATGAATTTTACATGCTTT+AGG | - | chr3_3:77866824-77866843 | None:intergenic | 25.0% |
| !! | ATTTTCTTAAGCTTTTCTTG+TGG | + | chr3_3:77867184-77867203 | Msa0474810:intron | 25.0% |
| ! | CACTATCATACATATTAATC+TGG | + | chr3_3:77867349-77867368 | Msa0474810:intron | 25.0% |
| ! | AATTTCCAATTTACACCATT+TGG | - | chr3_3:77867457-77867476 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr3_3:77867485-77867504 | Msa0474810:CDS | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | - | chr3_3:77867694-77867713 | None:intergenic | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | + | chr3_3:77867771-77867790 | Msa0474810:CDS | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | - | chr3_3:77868364-77868383 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | + | chr3_3:77868600-77868619 | Msa0474810:intron | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | - | chr3_3:77868668-77868687 | None:intergenic | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | + | chr3_3:77869005-77869024 | Msa0474810:CDS | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | + | chr3_3:77869032-77869051 | Msa0474810:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | + | chr3_3:77869205-77869224 | Msa0474810:CDS | 25.0% |
| TCTTGTGACATACTAAAAGT+TGG | - | chr3_3:77866951-77866970 | None:intergenic | 30.0% | |
| !! | TCTATTACTTTAACTTGCTC+TGG | + | chr3_3:77867046-77867065 | Msa0474810:intron | 30.0% |
| TAGATGGAGTCTATAAACTA+TGG | + | chr3_3:77867148-77867167 | Msa0474810:intron | 30.0% | |
| AGATGGAGTCTATAAACTAT+GGG | + | chr3_3:77867149-77867168 | Msa0474810:intron | 30.0% | |
| ! | AATTCAGCCTTCTTTGTTTA+GGG | + | chr3_3:77867244-77867263 | Msa0474810:intron | 30.0% |
| ATTTGACAACTCGATGAAAT+TGG | + | chr3_3:77867288-77867307 | Msa0474810:intron | 30.0% | |
| ! | GTCTTTACACATGTAGTTTT+CGG | - | chr3_3:77867433-77867452 | None:intergenic | 30.0% |
| TGGCAAAATATGGTTTCAAA+AGG | + | chr3_3:77867495-77867514 | Msa0474810:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | + | chr3_3:77867496-77867515 | Msa0474810:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | + | chr3_3:77867500-77867519 | Msa0474810:CDS | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | - | chr3_3:77867561-77867580 | None:intergenic | 30.0% | |
| AAAGATGTGCACATGAAAAA+GGG | - | chr3_3:77867593-77867612 | None:intergenic | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | - | chr3_3:77867800-77867819 | None:intergenic | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | + | chr3_3:77867799-77867818 | Msa0474810:CDS | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | - | chr3_3:77867927-77867946 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTATTGTGTGTT+TGG | + | chr3_3:77867963-77867982 | Msa0474810:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | + | chr3_3:77868037-77868056 | Msa0474810:intron | 30.0% |
| TTGAGTGCAAAAATCATCTT+TGG | - | chr3_3:77868122-77868141 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | + | chr3_3:77868221-77868240 | Msa0474810:intron | 30.0% |
| TTGAGTGTAAAATTCACTCT+TGG | - | chr3_3:77868281-77868300 | None:intergenic | 30.0% | |
| ! | GATTGTGAAGTGTTTATGTT+TGG | - | chr3_3:77868338-77868357 | None:intergenic | 30.0% |
| TTATCAGCATCAACAATCAT+TGG | - | chr3_3:77868483-77868502 | None:intergenic | 30.0% | |
| ! | GATTTGGTTATTGATGTTGT+TGG | - | chr3_3:77868652-77868671 | None:intergenic | 30.0% |
| GAAGACAATAACTTGAAAGT+TGG | + | chr3_3:77869140-77869159 | Msa0474810:CDS | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | + | chr3_3:77869204-77869223 | Msa0474810:CDS | 30.0% | |
| ATGATCTTGAAGAAGTGAAC+TGG | - | chr3_3:77866533-77866552 | None:intergenic | 35.0% | |
| CTTACTCAAAACCTTCATCA+AGG | + | chr3_3:77866554-77866573 | Msa0474810:CDS | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr3_3:77866568-77866587 | None:intergenic | 35.0% | |
| TCATCAATTTAGTCTGTTGC+TGG | + | chr3_3:77866838-77866857 | Msa0474810:intron | 35.0% | |
| !! | TTTAACTTGCTCTGGAAGAA+TGG | + | chr3_3:77867054-77867073 | Msa0474810:intron | 35.0% |
| ! | TACAGATGAGCTTTTCTAGA+TGG | + | chr3_3:77867132-77867151 | Msa0474810:intron | 35.0% |
| ! | TTGTGGACTGTGAAAGTTAT+GGG | + | chr3_3:77867201-77867220 | Msa0474810:intron | 35.0% |
| ! | CAATTCAGCCTTCTTTGTTT+AGG | + | chr3_3:77867243-77867262 | Msa0474810:intron | 35.0% |
| ! | GTAGATGTTGTCTAAAGTAG+TGG | + | chr3_3:77867310-77867329 | Msa0474810:intron | 35.0% |
| TATTTCTCCACAAGCTTTCT+TGG | - | chr3_3:77867397-77867416 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | + | chr3_3:77867397-77867416 | Msa0474810:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | + | chr3_3:77867439-77867458 | Msa0474810:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | + | chr3_3:77867449-77867468 | Msa0474810:CDS | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | - | chr3_3:77867594-77867613 | None:intergenic | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | - | chr3_3:77867642-77867661 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | - | chr3_3:77867643-77867662 | None:intergenic | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | + | chr3_3:77867645-77867664 | Msa0474810:CDS | 35.0% | |
| AAAAAGGTCTTCAACTGTCA+AGG | + | chr3_3:77867661-77867680 | Msa0474810:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | - | chr3_3:77867746-77867765 | None:intergenic | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | + | chr3_3:77867758-77867777 | Msa0474810:CDS | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | + | chr3_3:77867798-77867817 | Msa0474810:CDS | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | + | chr3_3:77867805-77867824 | Msa0474810:CDS | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | + | chr3_3:77867919-77867938 | Msa0474810:intron | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | + | chr3_3:77867932-77867951 | Msa0474810:intron | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | + | chr3_3:77867943-77867962 | Msa0474810:intron | 35.0% | |
| ! | TCACGTATAAGTGAGTTGAA+CGG | - | chr3_3:77868309-77868328 | None:intergenic | 35.0% |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | - | chr3_3:77868461-77868480 | None:intergenic | 35.0% |
| TGCAACTTACCAGAAGAAAA+TGG | - | chr3_3:77868590-77868609 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | + | chr3_3:77868949-77868968 | Msa0474810:intron | 35.0% |
| TTCAAATCTTAGTCCTGTGT+GGG | - | chr3_3:77869093-77869112 | None:intergenic | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | - | chr3_3:77869211-77869230 | None:intergenic | 35.0% | |
| GATGGTACATGCTACTATCT+CGG | - | chr3_3:77866977-77866996 | None:intergenic | 40.0% | |
| TGATGTAGTCAGCTGCAATA+TGG | - | chr3_3:77867080-77867099 | None:intergenic | 40.0% | |
| ! | CTTGTGGACTGTGAAAGTTA+TGG | + | chr3_3:77867200-77867219 | Msa0474810:intron | 40.0% |
| GAAGGCTGAATTGAGTAAAC+AGG | - | chr3_3:77867236-77867255 | None:intergenic | 40.0% | |
| CGAATTGCCCTAAACAAAGA+AGG | - | chr3_3:77867254-77867273 | None:intergenic | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | + | chr3_3:77867535-77867554 | Msa0474810:CDS | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | + | chr3_3:77867606-77867625 | Msa0474810:intron | 40.0% |
| CAAAGGGCTATTTATCTCCA+AGG | - | chr3_3:77867626-77867645 | None:intergenic | 40.0% | |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | + | chr3_3:77867733-77867752 | Msa0474810:CDS | 40.0% |
| ACTGCTTCCAATTTCAAAGG+AGG | - | chr3_3:77867743-77867762 | None:intergenic | 40.0% | |
| !! | AATGCCAGTCATTTTCCACA+TGG | - | chr3_3:77867950-77867969 | None:intergenic | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | + | chr3_3:77867974-77867993 | Msa0474810:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | + | chr3_3:77867975-77867994 | Msa0474810:intron | 40.0% |
| CCATTTCACGTTCAACTCAT+CGG | + | chr3_3:77868187-77868206 | Msa0474810:intron | 40.0% | |
| ! | GTGTTCCATTTCGATTTTGC+AGG | + | chr3_3:77868453-77868472 | Msa0474810:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr3_3:77868545-77868564 | Msa0474810:CDS | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr3_3:77868546-77868565 | Msa0474810:CDS | 40.0% |
| AGTCTGCCAAGCAAAAGAAA+AGG | - | chr3_3:77868958-77868977 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | + | chr3_3:77868972-77868991 | Msa0474810:intron | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | - | chr3_3:77868984-77869003 | None:intergenic | 40.0% | |
| AAGTGTCAAATGGCAGAGTT+TGG | + | chr3_3:77869042-77869061 | Msa0474810:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | - | chr3_3:77869094-77869113 | None:intergenic | 40.0% | |
| GGACTAAGATTTGAACTCTC+AGG | + | chr3_3:77869098-77869117 | Msa0474810:CDS | 40.0% | |
| CTAAGATTTGAACTCTCAGG+TGG | + | chr3_3:77869101-77869120 | Msa0474810:CDS | 40.0% | |
| CTGAATTGAGTAAACAGGCC+GGG | - | chr3_3:77867231-77867250 | None:intergenic | 45.0% | |
| GCTGAATTGAGTAAACAGGC+CGG | - | chr3_3:77867232-77867251 | None:intergenic | 45.0% | |
| ! | TTGTTTAGGGCAATTCGAGC+TGG | + | chr3_3:77867257-77867276 | Msa0474810:intron | 45.0% |
| ! | TGTTTAGGGCAATTCGAGCT+GGG | + | chr3_3:77867258-77867277 | Msa0474810:intron | 45.0% |
| GATGATGCCAAGAAAGCTTG+TGG | + | chr3_3:77867387-77867406 | Msa0474810:intron | 45.0% | |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | + | chr3_3:77867976-77867995 | Msa0474810:intron | 45.0% |
| ! | CCGATGAGTTGAACGTGAAA+TGG | - | chr3_3:77868190-77868209 | None:intergenic | 45.0% |
| CCCATGACAACAACAAAGGA+TGG | - | chr3_3:77868549-77868568 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr3_3:77868553-77868572 | None:intergenic | 45.0% | |
| ! | CGTTGAGCACCATTTTCTTC+TGG | + | chr3_3:77868578-77868597 | Msa0474810:CDS | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr3_3:77869068-77869087 | None:intergenic | 45.0% |
| GATTTGAACTCTCAGGTGGA+TGG | + | chr3_3:77869105-77869124 | Msa0474810:CDS | 45.0% | |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | - | chr3_3:77868409-77868428 | None:intergenic | 5.0% |
| GTGAAAGTTATGGGCTTGCC+CGG | + | chr3_3:77867210-77867229 | Msa0474810:intron | 50.0% | |
| ACAGTGGGGAGAGTCAAAAG+TGG | + | chr3_3:77867990-77868009 | Msa0474810:intron | 50.0% | |
| CTGTGTGGGACATCCTGATT+CGG | - | chr3_3:77869079-77869098 | None:intergenic | 50.0% | |
| TTAGGGCAATTCGAGCTGGG+CGG | + | chr3_3:77867261-77867280 | Msa0474810:intron | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr3_3:77869063-77869082 | Msa0474810:CDS | 55.0% |
| CGAATCAGGATGTCCCACAC+AGG | + | chr3_3:77869077-77869096 | Msa0474810:CDS | 55.0% | |
| TAGGGCAATTCGAGCTGGGC+GGG | + | chr3_3:77867262-77867281 | Msa0474810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 77866493 | 77869313 | 77866493 | ID=Msa0474810;Name=Msa0474810 |
| chr3_3 | mRNA | 77866493 | 77869313 | 77866493 | ID=Msa0474810-mRNA-1;Parent=Msa0474810;Name=Msa0474810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=10|0|0|0.8|0.75|0.6|5|0|312 |
| chr3_3 | exon | 77866493 | 77866583 | 77866493 | ID=Msa0474810-mRNA-1:exon:20873;Parent=Msa0474810-mRNA-1 |
| chr3_3 | exon | 77867388 | 77867600 | 77867388 | ID=Msa0474810-mRNA-1:exon:20874;Parent=Msa0474810-mRNA-1 |
| chr3_3 | exon | 77867619 | 77867826 | 77867619 | ID=Msa0474810-mRNA-1:exon:20875;Parent=Msa0474810-mRNA-1 |
| chr3_3 | exon | 77868505 | 77868599 | 77868505 | ID=Msa0474810-mRNA-1:exon:20876;Parent=Msa0474810-mRNA-1 |
| chr3_3 | exon | 77868975 | 77869313 | 77868975 | ID=Msa0474810-mRNA-1:exon:20877;Parent=Msa0474810-mRNA-1 |
| chr3_3 | five_prime_UTR | 77866493 | 77866502 | 77866493 | ID=Msa0474810-mRNA-1:five_prime_utr;Parent=Msa0474810-mRNA-1 |
| chr3_3 | CDS | 77866503 | 77866583 | 77866503 | ID=Msa0474810-mRNA-1:cds;Parent=Msa0474810-mRNA-1 |
| chr3_3 | CDS | 77867388 | 77867600 | 77867388 | ID=Msa0474810-mRNA-1:cds;Parent=Msa0474810-mRNA-1 |
| chr3_3 | CDS | 77867619 | 77867826 | 77867619 | ID=Msa0474810-mRNA-1:cds;Parent=Msa0474810-mRNA-1 |
| chr3_3 | CDS | 77868505 | 77868599 | 77868505 | ID=Msa0474810-mRNA-1:cds;Parent=Msa0474810-mRNA-1 |
| chr3_3 | CDS | 77868975 | 77869313 | 77868975 | ID=Msa0474810-mRNA-1:cds;Parent=Msa0474810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
