AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475530 MtrunA17_Chr3g0132851 94.280 944 52 2 1 942 138 1081 0.0 1706
Msa0475530 MtrunA17_Chr8g0346141 76.238 202 38 2 1 201 141 333 1.40e-85 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475530 AT1G09710.5 43.902 123 56 4 28 149 140 250 1.42e-18 91.3
Msa0475530 AT1G09710.3 43.902 123 56 4 28 149 140 250 1.42e-18 91.3
Msa0475530 AT1G09710.1 43.902 123 56 4 28 149 169 279 1.49e-18 91.3
Msa0475530 AT1G09710.4 43.902 123 56 4 28 149 169 279 1.49e-18 91.3
Msa0475530 AT1G09710.2 43.902 123 56 4 28 149 169 279 2.23e-18 90.9
Msa0475530 AT1G58220.1 40.496 121 62 5 54 172 185 297 3.24e-16 84.3
Msa0475530 AT1G58220.2 40.496 121 62 5 54 172 185 297 4.68e-16 83.6
Msa0475530 AT1G69550.1 30.843 415 241 20 260 645 747 1144 5.00e-13 73.9
Msa0475530 AT1G69550.1 31.099 373 235 17 264 630 847 1203 4.86e-12 70.9

Find 279 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTAAGACACCCATTTC+TGG 0.210279 3_3:+78775248 Msa0475530:CDS
CGAAGGCAAACCAGCATAAA+TGG 0.211882 3_3:-78774886 None:intergenic
GGCACATTTGAATGAACTTT+TGG 0.225392 3_3:-78775212 None:intergenic
TCCTCTTTCACATTCTCTTT+TGG 0.232674 3_3:-78775541 None:intergenic
TGTGTTGCACTTCTCTTAAT+AGG 0.272964 3_3:-78771888 None:intergenic
AAACCTGCCATTGTTCATTC+TGG 0.279281 3_3:+78773640 Msa0475530:CDS
TGGTTTGCCTTCTGACAAAA+AGG 0.282228 3_3:+78774674 Msa0475530:CDS
AGCCTCAATTGTTGCGCTAC+TGG 0.294219 3_3:-78771574 Msa0475520:CDS
AGAAATGGGGTGAAGGGAAT+TGG 0.300076 3_3:+78771838 Msa0475530:CDS
AGAAGGCAAACCGGCAGAAT+TGG 0.302436 3_3:-78774064 None:intergenic
GTCTGTCTCGGGACAGTAAC+TGG 0.309971 3_3:-78771690 None:intergenic
TCCACTCTCAGTGGCCTTGT+TGG 0.316509 3_3:-78775737 None:intergenic
CCAGCAGAAATGGGTGTCTT+TGG 0.317731 3_3:-78774129 None:intergenic
GAATTACCAGCAGGCACATT+TGG 0.320594 3_3:-78774924 None:intergenic
TGACGGCATTCATCTTGTTT+TGG 0.324422 3_3:-78775865 None:intergenic
GGCACATTTGGATGAACCTT+TGG 0.325181 3_3:-78774912 None:intergenic
CCACTCTCAGTGGCCTTGTT+GGG 0.330071 3_3:-78775736 None:intergenic
GCCTCAATTGTTGCGCTACT+GGG 0.330390 3_3:-78771573 Msa0475520:CDS
TGGAAATGACAATTTGAATA+AGG 0.337671 3_3:+78775756 Msa0475530:CDS
ACAAAGACACCCATTTCTTC+TGG 0.340474 3_3:+78773763 Msa0475530:CDS
ACAAAGACACCCATTTCTTC+TGG 0.340474 3_3:+78774354 Msa0475530:CDS
ACGGGAAAATTTACAGTCAT+TGG 0.342085 3_3:-78771597 Msa0475520:CDS
TTCGCAGCCCTCTATCTTGA+TGG 0.342268 3_3:+78771647 Msa0475530:CDS
AGAAGGCATGCCAGCAGAAA+TGG 0.343246 3_3:-78773989 None:intergenic
GACACATTTGAATGAACCTT+TGG 0.345096 3_3:-78774240 None:intergenic
GGCACATTTGAATGAACCTT+TGG 0.345630 3_3:-78774987 None:intergenic
GGCACATTTGAATGAACCTT+TGG 0.345630 3_3:-78775062 None:intergenic
GGCACATTTGAATGAACCTT+TGG 0.345630 3_3:-78775137 None:intergenic
AAATGCTGCGCCACAATTGA+TGG 0.346361 3_3:+78773690 Msa0475530:CDS
CATGCCCACTGAGAAAGTTT+TGG 0.346414 3_3:+78775642 Msa0475530:CDS
ACGAAGACACCCATTTCTTC+TGG 0.349086 3_3:+78774801 Msa0475530:CDS
ACATTTACATTTGGCTGAAC+AGG 0.355845 3_3:-78773862 None:intergenic
TGAAGGAAAACCAGCGGAAA+TGG 0.356681 3_3:-78775186 None:intergenic
GCACATTTGAACGAATCTTT+TGG 0.357889 3_3:-78773792 None:intergenic
GCTACATTTGAACAAACCTT+TGG 0.358466 3_3:-78774090 None:intergenic
GACACCCATTTCTACTGGTT+TGG 0.359302 3_3:+78773837 Msa0475530:CDS
GTACATTTGAATGGACCTTT+TGG 0.361368 3_3:-78774761 None:intergenic
CCTTCTTTCTAAATTATGTA+TGG 0.362384 3_3:+78775997 Msa0475530:three_prime_UTR
TTGGTGCAAACCAGAAGAAA+TGG 0.364583 3_3:-78773773 None:intergenic
TAGAAATTAAACACAGGTAG+TGG 0.365511 3_3:+78775910 Msa0475530:three_prime_UTR
GGAAGGCAAACCAGCGGAAA+TGG 0.367136 3_3:-78775111 None:intergenic
AGAAGACAAACCAGAAGAAA+TGG 0.367364 3_3:-78774811 None:intergenic
AGAAGGCAAACCCGTGGAAA+TGG 0.370661 3_3:-78775336 None:intergenic
AGATGAATGCCGTCAAGGTT+TGG 0.374635 3_3:+78775873 Msa0475530:CDS
GCACATTTGAATAAACCTTT+TGG 0.375009 3_3:-78774014 None:intergenic
GAATGAACCTTTGGGTTAGA+AGG 0.377472 3_3:-78774231 None:intergenic
AGGAGCCAAACCAGTAGAAA+TGG 0.379537 3_3:-78773842 None:intergenic
CATGTCAAGGGCTAAATTTA+AGG 0.380459 3_3:-78772613 None:intergenic
GCACATTTGAATGAACCTTT+TGG 0.381110 3_3:-78773939 None:intergenic
GGAAGGCAAACCAGCAGAAA+TGG 0.385039 3_3:-78774439 None:intergenic
GGTAAATAGCAAACTGGATA+AGG 0.388102 3_3:+78775591 Msa0475530:CDS
GTTCATTCAAATGTACTTGC+CGG 0.388600 3_3:+78774171 Msa0475530:CDS
GCACATTTGAATGAACCTTT+TGG 0.388730 3_3:-78774314 None:intergenic
AGAAGGCAGACAACCAGAAA+TGG 0.392738 3_3:-78775261 None:intergenic
AGAAGGCAAACCAACAGAAA+TGG 0.393504 3_3:-78774664 None:intergenic
AGAAGGCAAACTAGCAGAAA+TGG 0.394922 3_3:-78774736 None:intergenic
ACACATTTAAATGAACCTTT+TGG 0.395379 3_3:-78774464 None:intergenic
AGAAGGCAAACCAACAGAAA+TGG 0.398241 3_3:-78774289 None:intergenic
AGAAGGCAAACCAACAGAAA+TGG 0.398241 3_3:-78774589 None:intergenic
AGAAGGCAAACCAGCAGAAA+TGG 0.398765 3_3:-78773914 None:intergenic
AGAAGGCAAACCAGCAGAAA+TGG 0.398765 3_3:-78774139 None:intergenic
AGAAGGCAAACCAGCAGAAA+TGG 0.398765 3_3:-78774214 None:intergenic
GTACATTTGAATGAACCTTT+TGG 0.399514 3_3:-78774164 None:intergenic
AGAAGGCAAACCAGAAGAAA+TGG 0.400120 3_3:-78774364 None:intergenic
ACACATTTGAATGAACCTTT+TGG 0.401149 3_3:-78774389 None:intergenic
CATTTATGCTGGTTTGCCTT+CGG 0.401318 3_3:+78774887 Msa0475530:CDS
CGTCTTCGTCAAAGAACTTC+CGG 0.405150 3_3:-78774565 None:intergenic
ACACGTTTGAATGAGCCTTT+TGG 0.405601 3_3:-78774614 None:intergenic
TACGGGATGCTGTTCAGAAA+TGG 0.406647 3_3:+78771823 Msa0475530:CDS
TCAAGTGCAGCCTCGTAATA+CGG 0.407114 3_3:+78773483 Msa0475530:CDS
TTTGACAAAGACACCCATTT+CGG 0.408706 3_3:+78774947 Msa0475530:CDS
GCACATTTGGATGAACCTTT+GGG 0.411239 3_3:-78774911 None:intergenic
AGAAGGCAAACCAGCCGAAA+TGG 0.415634 3_3:-78774961 None:intergenic
AAAAGCATGGTCAGAGGAAG+AGG 0.416790 3_3:+78771791 Msa0475530:CDS
TGTGACAAAGACACCCATTT+CGG 0.418344 3_3:+78775022 Msa0475530:CDS
TGTCTTTGGCAAAGAATTAC+CGG 0.420529 3_3:-78774115 None:intergenic
TTAGAAACCAAGGTAACAAT+TGG 0.423542 3_3:+78771741 Msa0475530:CDS
CCGTCAGGCACATTTACATT+TGG 0.427725 3_3:-78773871 None:intergenic
AGAAGGCAAAGCAGCCGAAA+TGG 0.429770 3_3:-78775036 None:intergenic
CTACATTTGAACAAACCTTT+GGG 0.433849 3_3:-78774089 None:intergenic
GAAATGGGGTGAAGGGAATT+GGG 0.437027 3_3:+78771839 Msa0475530:CDS
GAAGGCAAACCGGCAGAATT+GGG 0.438206 3_3:-78774063 None:intergenic
TGTCTTCGTCAAAGAATTAC+CGG 0.442809 3_3:-78774415 None:intergenic
TGTCTTCGTCAAAGAATTAC+CGG 0.442809 3_3:-78774490 None:intergenic
TTCTGTACCACCTCAACGTC+CGG 0.443726 3_3:+78773528 Msa0475530:CDS
CCAAAGACACCCATTTCTGC+TGG 0.445020 3_3:+78774129 Msa0475530:CDS
TATCCAGTTTGCTATTTACC+TGG 0.447550 3_3:-78775588 None:intergenic
TCTTTGAAGTTCGTGATGAA+TGG 0.451319 3_3:-78771623 None:intergenic
GCACATTTGAATGAACCTTT+GGG 0.452112 3_3:-78774986 None:intergenic
GCACATTTGAATGAACCTTT+GGG 0.452112 3_3:-78775061 None:intergenic
GCACATTTGAATGAACCTTT+GGG 0.452112 3_3:-78775136 None:intergenic
ACAGTGGTCGTGGTGGGTCC+AGG 0.456403 3_3:-78772543 None:intergenic
TTCCCCTACGAAACCCAAAC+TGG 0.457860 3_3:+78773567 Msa0475530:CDS
GAAGGCAAACCAACAGAAAT+GGG 0.458305 3_3:-78774663 None:intergenic
TAACAGAACTTGTCTTGTCT+TGG 0.461383 3_3:-78775795 None:intergenic
TGGTTTGCCTTCTAACCAAA+AGG 0.461712 3_3:+78774374 Msa0475530:CDS
GAAGGCAAACCAGCAGTAAT+GGG 0.462850 3_3:-78774513 None:intergenic
TGGTTTGCCTTCTAATCAAA+AGG 0.462941 3_3:+78774524 Msa0475530:CDS
GAAGGCAAACCAACAGAAAT+GGG 0.463043 3_3:-78774588 None:intergenic
TGGTTTGTCTTCTGACAAGA+AGG 0.464975 3_3:+78774821 Msa0475530:CDS
AAAGACGGCAGTGCCAATCC+TGG 0.468113 3_3:+78772525 Msa0475530:CDS
TGGTTTGCCTTCTAACCAAA+AGG 0.469974 3_3:+78774599 Msa0475530:CDS
TGGTTTGCCTTCTAACCAAA+AGG 0.470646 3_3:+78773924 Msa0475530:CDS
TGGTTTGCCTTCTAACCAAA+AGG 0.470646 3_3:+78774149 Msa0475530:CDS
TGGTTTGCCTTCTAACCAAA+AGG 0.470646 3_3:+78774299 Msa0475530:CDS
TGGTTTGCCTTCCAACCAAA+AGG 0.471340 3_3:+78774449 Msa0475530:CDS
GAAGGCAAACCAACAGAAAT+GGG 0.471512 3_3:-78774288 None:intergenic
ACGGGATGCTGTTCAGAAAT+GGG 0.471647 3_3:+78771824 Msa0475530:CDS
TACCGACAGGTACATTTGAA+TGG 0.471655 3_3:-78774770 None:intergenic
GGTCGTGGTGGGTCCAGGAT+TGG 0.471827 3_3:-78772538 None:intergenic
CGGTTTGCCTTCTGACCCAA+AGG 0.475203 3_3:+78774074 Msa0475530:CDS
GAAGGCAAACCAGCCGAAAT+GGG 0.475417 3_3:-78774960 None:intergenic
ACACATTTGAATGAACCTTT+GGG 0.475923 3_3:-78774239 None:intergenic
GGCACGTTTGAATGAACCAT+TGG 0.476744 3_3:-78775287 None:intergenic
GGGTTTGCCTTCTGACCAAA+AGG 0.476808 3_3:+78775346 Msa0475530:CDS
TGGTGCAAACCAGAAGAAAT+GGG 0.478072 3_3:-78773772 None:intergenic
TACCTTGGTTTCTAAAGCAT+CGG 0.478903 3_3:-78771733 None:intergenic
GAAGGCAAAGCAGCCGAAAT+GGG 0.479043 3_3:-78775035 None:intergenic
ACAAAGACACCCATTTCTAC+TGG 0.480260 3_3:+78773832 Msa0475530:CDS
GTGTTTAATTTCTACTATCA+CGG 0.482348 3_3:-78775901 None:intergenic
TGCTTTGCCTTCTGACCCAA+AGG 0.483759 3_3:+78775046 Msa0475530:CDS
GTTCATTCAAATGTGTCTAC+TGG 0.484161 3_3:+78774246 Msa0475530:CDS
CCTCGCTCTTCACACCCTAC+AGG 0.484270 3_3:-78775688 None:intergenic
GTTCGTGATGAATGGCAAAC+GGG 0.485192 3_3:-78771615 None:intergenic
TACATCTACTACTGAGGGCC+AGG 0.486397 3_3:+78775570 Msa0475530:CDS
TCAAGGACACCCATTTCTGC+TGG 0.490710 3_3:+78773904 Msa0475530:CDS
AGAAGGCAAACCAGCAGTAA+TGG 0.491287 3_3:-78774514 None:intergenic
GAAGGCAAACCCGTGGAAAT+GGG 0.492020 3_3:-78775335 None:intergenic
TAGTTTGCCTTCTAACCAAA+AGG 0.493158 3_3:+78774746 Msa0475530:CDS
GGTACCACCAATTGTTACCT+TGG 0.493291 3_3:-78771748 None:intergenic
TTGTCTGCCTTCTGACCCAA+TGG 0.494426 3_3:+78775271 Msa0475530:CDS
GAAGGCATGCCAGCAGAAAT+GGG 0.501072 3_3:-78773988 None:intergenic
TGGCATGCCTTCTAACCAAA+AGG 0.501693 3_3:+78773999 Msa0475530:CDS
ACGAAGACACCCATTTCTGC+TGG 0.502699 3_3:+78773979 Msa0475530:CDS
AGGCCAGTTTGGGTTTCGTA+GGG 0.503490 3_3:-78773570 None:intergenic
GGCAGTATACTGTGCGTTGG+TGG 0.503805 3_3:-78772568 None:intergenic
GCTCCTGGAGTGACTGATCC+TGG 0.505141 3_3:+78772654 Msa0475530:CDS
ACAGTTGGCAGTGTCTGTCT+CGG 0.505188 3_3:-78771702 None:intergenic
GTTCATTCAAATGTGCCTAC+TGG 0.505345 3_3:+78774321 Msa0475530:CDS
ACGAAGACACCCATTTCTGC+TGG 0.505822 3_3:+78774429 Msa0475530:CDS
CTTTGGGTCAGAAGGCAAAC+CGG 0.505947 3_3:-78774073 None:intergenic
GAAGGCAAACCAGCAGAAAT+GGG 0.506520 3_3:-78773913 None:intergenic
GAAGGCAAACCAGCAGAAAT+GGG 0.506520 3_3:-78774138 None:intergenic
GAAGGCAAACCAGCAGAAAT+GGG 0.506520 3_3:-78774213 None:intergenic
GACAAAGACACCCATTTCCA+CGG 0.506875 3_3:+78775325 Msa0475530:CDS
GTGACGAGTTGCCAACTGTT+CGG 0.507694 3_3:-78772589 None:intergenic
ACAAAGACACCCATTTCTGC+TGG 0.507842 3_3:+78774204 Msa0475530:CDS
GAGGCCAGTTTGGGTTTCGT+AGG 0.509142 3_3:-78773571 None:intergenic
GAAGGCAGACAACCAGAAAT+GGG 0.510065 3_3:-78775260 None:intergenic
GAAGGAAAACCAGCGGAAAT+GGG 0.510470 3_3:-78775185 None:intergenic
GGGCCAGGTAAATAGCAAAC+TGG 0.510531 3_3:+78775585 Msa0475530:CDS
TTTGTCAGAGAACTAGCAAC+AGG 0.510682 3_3:-78774858 None:intergenic
TTAAACACAGGTAGTGGGTA+TGG 0.510799 3_3:+78775916 Msa0475530:three_prime_UTR
GAAGGCAAACTAGCAGAAAT+GGG 0.511130 3_3:-78774735 None:intergenic
TGACTGATCCATCAAGATAG+AGG 0.511332 3_3:-78771655 None:intergenic
GAAGGCAAACCAGCGGAAAT+GGG 0.512909 3_3:-78775110 None:intergenic
GAACCACAAGCTTGTTGAGC+CGG 0.513950 3_3:-78773547 None:intergenic
ACCAAAAGAGAATGTGAAAG+AGG 0.514590 3_3:+78775540 Msa0475530:CDS
CAGTTGGCAGTGTCTGTCTC+GGG 0.514798 3_3:-78771701 None:intergenic
CCCAACAAGGCCACTGAGAG+TGG 0.515227 3_3:+78775736 Msa0475530:CDS
ACAAAGACACCCATTTATGC+TGG 0.516867 3_3:+78774876 Msa0475530:CDS
AAGTGCAACACAATTGTCTC+AGG 0.517574 3_3:+78771899 Msa0475530:CDS
TGGTTTGCCTTCTAACCCAA+AGG 0.517852 3_3:+78774224 Msa0475530:CDS
CCCCAGTAGCGCAACAATTG+AGG 0.519910 3_3:+78771572 Msa0475530:five_prime_UTR
TGTTCCAAAACTTTCTCAGT+GGG 0.520708 3_3:-78775646 None:intergenic
GAAGGCAAACCAGCATAAAT+GGG 0.521393 3_3:-78774885 None:intergenic
AGTTCGTGATGAATGGCAAA+CGG 0.522557 3_3:-78771616 None:intergenic
ACGAAGACACCCATTACTGC+TGG 0.523061 3_3:+78774504 Msa0475530:CDS
TGGTTTGCCTTCTGACCCAA+AGG 0.523226 3_3:+78774971 Msa0475530:CDS
GTTCATTCAAATGTGCCTGC+TGG 0.523640 3_3:+78775218 Msa0475530:CDS
GAAGACAAACCAGAAGAAAT+GGG 0.524016 3_3:-78774810 None:intergenic
ACAGTATACTGCCGAACAGT+TGG 0.526770 3_3:+78772578 Msa0475530:CDS
GGAGCCAAACCAGTAGAAAT+GGG 0.526973 3_3:-78773841 None:intergenic
GAAGGCAAACCAGAAGAAAT+GGG 0.527291 3_3:-78774363 None:intergenic
GTTCATTCAAACGTGCCTGC+TGG 0.527496 3_3:+78775293 Msa0475530:CDS
GTGGTACCGCAGCTTCCAAA+AGG 0.530566 3_3:+78771763 Msa0475530:CDS
GGATGAACCTTTGGGTCCGA+AGG 0.531443 3_3:-78774903 None:intergenic
CCTCAATTGTTGCGCTACTG+GGG 0.535284 3_3:-78771572 Msa0475520:CDS
GCTCCAGAATGAACAATGGC+AGG 0.536117 3_3:-78773643 None:intergenic
ACAAAGCCACCCATTTCTGT+TGG 0.536679 3_3:+78774279 Msa0475530:CDS
GAAACCAAGGTAACAATTGG+TGG 0.536953 3_3:+78771744 Msa0475530:CDS
GAATGAACCTTTGGGTCAGA+AGG 0.537175 3_3:-78774978 None:intergenic
GAATGAACCTTTGGGTCAGA+AGG 0.537175 3_3:-78775053 None:intergenic
GTGGTCACAGTGGTCGTGGT+GGG 0.537427 3_3:-78772549 None:intergenic
GAAGGCAAACCAGCAGAAAT+GGG 0.538001 3_3:-78774438 None:intergenic
GTTCATTTAAATGTGTCTGC+CGG 0.539183 3_3:+78774471 Msa0475530:CDS
AATTGGGCTACCATGGCAAA+AGG 0.539271 3_3:+78771855 Msa0475530:CDS
ACGGCACTTCCAAACCTTGA+CGG 0.540493 3_3:-78775882 None:intergenic
GAACAAACCTTTGGGTCAGA+AGG 0.541604 3_3:-78774081 None:intergenic
ACGAAGACGCCCATTTCTGT+TGG 0.541687 3_3:+78774579 Msa0475530:CDS
ACGAAGACGCCCATTTCTGT+TGG 0.541687 3_3:+78774654 Msa0475530:CDS
GCTCATTCAAACGTGTCTGC+CGG 0.543810 3_3:+78774621 Msa0475530:CDS
GCTTGTTGAGCCGGACGTTG+AGG 0.544661 3_3:-78773538 None:intergenic
TGTCTTTGTCAAAGAACTAC+CGG 0.545024 3_3:-78774190 None:intergenic
CCATACATAATTTAGAAAGA+AGG 0.545426 3_3:-78775997 None:intergenic
GTTTGTTCAAATGTAGCTGC+CGG 0.545666 3_3:+78774096 Msa0475530:CDS
GCACGTTTGAATGAACCATT+GGG 0.548700 3_3:-78775286 None:intergenic
TGGTTTGCCTTCCGACCCAA+AGG 0.550577 3_3:+78775121 Msa0475530:CDS
ACAAAGACACCCATTTCGGC+TGG 0.551953 3_3:+78774951 Msa0475530:CDS
GTTCATTCAAATGTGCCTGC+TGG 0.552225 3_3:+78774993 Msa0475530:CDS
GTTCATTCAAATGTGCCTGC+TGG 0.552225 3_3:+78775068 Msa0475530:CDS
GTTCATTCAAATGTGCCTGC+TGG 0.552225 3_3:+78775143 Msa0475530:CDS
GGTAGATTCACTTAGTGTGC+GGG 0.552870 3_3:-78771550 Msa0475520:intron
GTTCATCCAAATGTGCCTGC+TGG 0.554521 3_3:+78774918 Msa0475530:CDS
GAATGAACCATTGGGTCAGA+AGG 0.554661 3_3:-78775278 None:intergenic
TGTTACCTCTGTGAAAGAAG+TGG 0.557752 3_3:+78775489 Msa0475530:CDS
TGAAGGGAATTGGGCTACCA+TGG 0.558056 3_3:+78771848 Msa0475530:CDS
GAATGAACCTTTGGGTCGGA+AGG 0.558911 3_3:-78775128 None:intergenic
GTTCATTCAAATGTGCATGT+TGG 0.559978 3_3:+78773946 Msa0475530:CDS
GTTCATTCAAATGTGTCTGC+CGG 0.566100 3_3:+78774396 Msa0475530:CDS
CTGTTCAGAAATGGGGTGAA+GGG 0.567453 3_3:+78771832 Msa0475530:CDS
GCTGTTCAGAAATGGGGTGA+AGG 0.567552 3_3:+78771831 Msa0475530:CDS
TTCGTCAAAGAACTAGCGGC+AGG 0.567710 3_3:-78774036 None:intergenic
GTTGGTGGTCACAGTGGTCG+TGG 0.569297 3_3:-78772553 None:intergenic
CAATGCCTCAAAATCCTGTA+GGG 0.570433 3_3:+78775674 Msa0475530:CDS
TGGTTTGCCTTCGGACCCAA+AGG 0.572356 3_3:+78774896 Msa0475530:CDS
ACAAAGACACCCATTTCCGC+TGG 0.573908 3_3:+78775101 Msa0475530:CDS
ACAAAGACACCCATTTCCGC+TGG 0.573908 3_3:+78775176 Msa0475530:CDS
ATTCGTTCAAATGTGCCTGC+TGG 0.574576 3_3:+78773799 Msa0475530:CDS
ACGAAGACACCCAATTCTGC+CGG 0.575366 3_3:+78774054 Msa0475530:CDS
TTTGTCAAAGTACTGCCAGC+AGG 0.576092 3_3:-78773745 None:intergenic
AGCTTCTACATCTACTACTG+AGG 0.578242 3_3:+78775564 Msa0475530:CDS
TTTGTCAAAGTATTACCAGC+AGG 0.579303 3_3:-78775083 None:intergenic
GCATCGGTTGATGATACAGT+TGG 0.580284 3_3:-78771717 None:intergenic
GTGGCACATACTGTTCCTGC+TGG 0.580631 3_3:+78773730 Msa0475530:CDS
GCTTGCGAAACCATCAATTG+TGG 0.581299 3_3:-78773700 None:intergenic
GGAAGAGGACAATTTGCTAC+GGG 0.583393 3_3:+78771806 Msa0475530:CDS
GCTCATTCAAACGTGCATGC+CGG 0.584056 3_3:+78774546 Msa0475530:CDS
TTTGTCAAAGAATTGCCAGC+AGG 0.584774 3_3:-78775308 None:intergenic
CGTCTTCGTCAAAGAACTGC+CGG 0.588005 3_3:-78774640 None:intergenic
ACAAAGACACCCATTTCCAC+GGG 0.588590 3_3:+78775326 Msa0475530:CDS
GAAAAGAAAAGCATGGTCAG+AGG 0.589169 3_3:+78771785 Msa0475530:CDS
AGGAAGAGGACAATTTGCTA+CGG 0.589284 3_3:+78771805 Msa0475530:CDS
TTTGTCAAAGAATTACCAGC+AGG 0.589821 3_3:-78774933 None:intergenic
TTTGTCAAAGAATTACCAGC+AGG 0.589821 3_3:-78775158 None:intergenic
GGTGGTCACAGTGGTCGTGG+TGG 0.590582 3_3:-78772550 None:intergenic
CTTGATAAAGACCTACCGTC+AGG 0.594696 3_3:-78773886 None:intergenic
AAACAAGATGAATGCCGTCA+AGG 0.596474 3_3:+78775868 Msa0475530:CDS
AGAAATTAAACACAGGTAGT+GGG 0.598738 3_3:+78775911 Msa0475530:three_prime_UTR
GCAATGCCTCAAAATCCTGT+AGG 0.601195 3_3:+78775673 Msa0475530:CDS
CTCAATTGTTGCGCTACTGG+GGG 0.601848 3_3:-78771571 Msa0475520:intron
GACTGATCCATCAAGATAGA+GGG 0.602991 3_3:-78771654 None:intergenic
TGGTACAGAACTATGAATTG+TGG 0.604104 3_3:-78773515 None:intergenic
ATGTAAATGTGCCTGACGGT+AGG 0.605541 3_3:+78773875 Msa0475530:CDS
GTCCATTCAAATGTACCTGT+CGG 0.607453 3_3:+78774768 Msa0475530:CDS
CGTCCGGCTCAACAAGCTTG+TGG 0.608478 3_3:+78773544 Msa0475530:CDS
TGTTGAGCCGGACGTTGAGG+TGG 0.610658 3_3:-78773535 None:intergenic
TTACCAGGATCAGTCACTCC+AGG 0.611192 3_3:-78772657 None:intergenic
TTTGTCACAGAATTACCAGC+AGG 0.612077 3_3:-78775008 None:intergenic
TTCGTCAAAGAACTACCGAC+AGG 0.613219 3_3:-78774783 None:intergenic
TTCGGCAGTATACTGTGCGT+TGG 0.613588 3_3:-78772571 None:intergenic
GTGTTCCAAAACTTTCTCAG+TGG 0.614086 3_3:-78775647 None:intergenic
CTGACGGTAGGTCTTTATCA+AGG 0.614368 3_3:+78773887 Msa0475530:CDS
TTAGTCAAAGAATTACCAGC+AGG 0.616971 3_3:-78775233 None:intergenic
AACCGATGCTTTAGAAACCA+AGG 0.629910 3_3:+78771731 Msa0475530:CDS
TTTGTCAAAGAATTACCAGT+AGG 0.631019 3_3:-78774336 None:intergenic
ATTTGAATGAACCTTTGGGT+CGG 0.631592 3_3:-78775132 None:intergenic
CGGGATGCTGTTCAGAAATG+GGG 0.635932 3_3:+78771825 Msa0475530:CDS
TTTGTCAAAGAACTACCAGC+AGG 0.638168 3_3:-78773814 None:intergenic
GGGTAGATTCACTTAGTGTG+CGG 0.638583 3_3:-78771551 Msa0475520:intron
GAGACTTGCGCCGTATTACG+AGG 0.638752 3_3:-78773493 None:intergenic
GTAGTGGGTATGGTATCTAG+TGG 0.639340 3_3:+78775926 Msa0475530:three_prime_UTR
CCAAAAGGAAAAGAAAAGCA+TGG 0.641628 3_3:+78771778 Msa0475530:CDS
ATTGTCATTTCCACTCTCAG+TGG 0.642211 3_3:-78775746 None:intergenic
GCTTCTACATCTACTACTGA+GGG 0.642250 3_3:+78775565 Msa0475530:CDS
CAATTGCAAAGTAATAATGT+CGG 0.647431 3_3:-78775970 None:intergenic
GGCCAGTTTGGGTTTCGTAG+GGG 0.653534 3_3:-78773569 None:intergenic
TGTCTTCGTCAAAGAACTAG+CGG 0.655088 3_3:-78774040 None:intergenic
CCTGTAGGGTGTGAAGAGCG+AGG 0.660534 3_3:+78775688 Msa0475530:CDS
ATAGCAAACTGGATAAGGCG+AGG 0.665777 3_3:+78775596 Msa0475530:CDS
TGGGTCTGAAGGAAAACCAG+CGG 0.666507 3_3:-78775192 None:intergenic
CCAAATGTAAATGTGCCTGA+CGG 0.666752 3_3:+78773871 Msa0475530:CDS
TTGGTCAGAAGGCAAACCCG+TGG 0.670344 3_3:-78775342 None:intergenic
GGCAAACCAACAGAAATGGG+TGG 0.678936 3_3:-78774285 None:intergenic
CTGTGCGTTGGTGGTCACAG+TGG 0.686988 3_3:-78772559 None:intergenic
TGATAGTAGAAATTAAACAC+AGG 0.689901 3_3:+78775904 Msa0475530:exon
TGGGTCGGAAGGCAAACCAG+CGG 0.717449 3_3:-78775117 None:intergenic
AGCGCTTTAAGAAAGAAAGA+CGG 0.720749 3_3:+78772510 Msa0475530:CDS
TTGTGCTCCAGAATGAACAA+TGG 0.741917 3_3:-78773647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTTTTTTTTG+AGG + chr3_3:78773218-78773237 Msa0475530:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+GGG + chr3_3:78773219-78773238 Msa0475530:intron 10.0%
!!! CTGTAAATATTATATTTTAC+TGG + chr3_3:78772194-78772213 Msa0475530:intron 15.0%
!!! TAAAAAGTATTACTATTTGA+TGG - chr3_3:78773117-78773136 None:intergenic 15.0%
!! AATTAACAGTAAAGGTAAAA+TGG - chr3_3:78772440-78772459 None:intergenic 20.0%
!! TAATAGTCAATTAACAGTAA+AGG - chr3_3:78772448-78772467 None:intergenic 20.0%
!!! ACAGATTATTATTGTTTTGA+TGG + chr3_3:78773159-78773178 Msa0475530:intron 20.0%
!!! AAGGAATTTTATACCTAATT+AGG + chr3_3:78773269-78773288 Msa0475530:intron 20.0%
!! TAAAGTAAACTGTTAAATGT+TGG + chr3_3:78773296-78773315 Msa0475530:intron 20.0%
!!! AGTTTCAATTTTTCAATGTA+AGG + chr3_3:78773350-78773369 Msa0475530:intron 20.0%
!! TCATTTATCTATTACTTTAG+TGG + chr3_3:78773408-78773427 Msa0475530:intron 20.0%
!!! AAAAAATTCTCCATTTTGTA+GGG - chr3_3:78775434-78775453 None:intergenic 20.0%
!!! AAAAAAATTCTCCATTTTGT+AGG - chr3_3:78775435-78775454 None:intergenic 20.0%
! ATGAAAGAAAAATCATCAGT+TGG + chr3_3:78772131-78772150 Msa0475530:intron 25.0%
! AAAATGGAAACAAAAACAAC+AGG - chr3_3:78772424-78772443 None:intergenic 25.0%
! AGGTTAACTTTATGTTATGT+TGG + chr3_3:78772813-78772832 Msa0475530:intron 25.0%
! AAATCCTTAGATACAATCAA+TGG - chr3_3:78772960-78772979 None:intergenic 25.0%
!!! GTATCTAAGGATTTTGTTAT+CGG + chr3_3:78772966-78772985 Msa0475530:intron 25.0%
! ATTTAGTTAACAGCTACTAA+AGG + chr3_3:78773250-78773269 Msa0475530:intron 25.0%
! GGAAATCTGAATAACTTATA+TGG + chr3_3:78773429-78773448 Msa0475530:intron 25.0%
!!! CACTTGATTTTTTATTGATG+TGG - chr3_3:78773470-78773489 None:intergenic 25.0%
!! ATTTAAATGAACCTTTTGGT+TGG - chr3_3:78774463-78774482 None:intergenic 25.0%
!! ACACATTTAAATGAACCTTT+TGG - chr3_3:78774467-78774486 None:intergenic 25.0%
!!! TTTAAAACCTTTTTGTCAGA+AGG - chr3_3:78774684-78774703 None:intergenic 25.0%
! CATGTCGTAAGAAATTAATA+GGG - chr3_3:78775386-78775405 None:intergenic 25.0%
! ATATTTATCTCCCTACAAAA+TGG + chr3_3:78775421-78775440 Msa0475530:intron 25.0%
! TGGAAATGACAATTTGAATA+AGG + chr3_3:78775756-78775775 Msa0475530:CDS 25.0%
!! GTGTTTAATTTCTACTATCA+CGG - chr3_3:78775904-78775923 None:intergenic 25.0%
! TGATAGTAGAAATTAAACAC+AGG + chr3_3:78775904-78775923 Msa0475530:exon 25.0%
! CAATTGCAAAGTAATAATGT+CGG - chr3_3:78775973-78775992 None:intergenic 25.0%
! CCATACATAATTTAGAAAGA+AGG - chr3_3:78776000-78776019 None:intergenic 25.0%
! CCTTCTTTCTAAATTATGTA+TGG + chr3_3:78775997-78776016 Msa0475530:three_prime_UTR 25.0%
TTAGAAACCAAGGTAACAAT+TGG + chr3_3:78771741-78771760 Msa0475530:CDS 30.0%
! CACATAATACGACAACTTTT+AGG - chr3_3:78771937-78771956 None:intergenic 30.0%
! GTGATTTTTCTCTTCTAACA+TGG + chr3_3:78771954-78771973 Msa0475530:intron 30.0%
ATACCAGCTAGATCTATTAT+TGG + chr3_3:78771997-78772016 Msa0475530:intron 30.0%
TACCAGCTAGATCTATTATT+GGG + chr3_3:78771998-78772017 Msa0475530:intron 30.0%
GTACAGATGTACACTAAATA+TGG - chr3_3:78772077-78772096 None:intergenic 30.0%
ATCTCTTCCTTGATTCTAAA+AGG + chr3_3:78772108-78772127 Msa0475530:intron 30.0%
!!! CTTTCATCCTTTTAGAATCA+AGG - chr3_3:78772118-78772137 None:intergenic 30.0%
ACAAAATGTGTAATCTGTGA+TGG + chr3_3:78772335-78772354 Msa0475530:intron 30.0%
ATTAATACTACACGTTGTCA+TGG + chr3_3:78772464-78772483 Msa0475530:intron 30.0%
CAAATCTCTTTCAATGGTTT+GGG - chr3_3:78772913-78772932 None:intergenic 30.0%
CAAACCATTGAAAGAGATTT+GGG + chr3_3:78772912-78772931 Msa0475530:intron 30.0%
AAACCATTGAAAGAGATTTG+GGG + chr3_3:78772913-78772932 Msa0475530:intron 30.0%
TTTGATGGAATTCAGAGAAT+GGG - chr3_3:78773102-78773121 None:intergenic 30.0%
ATTTGATGGAATTCAGAGAA+TGG - chr3_3:78773103-78773122 None:intergenic 30.0%
TTTACTTTACTCGCCTAATT+AGG - chr3_3:78773285-78773304 None:intergenic 30.0%
TGAATAACTTATATGGTTGC+AGG + chr3_3:78773436-78773455 Msa0475530:intron 30.0%
!! GAATAAACCTTTTGGTTAGA+AGG - chr3_3:78774009-78774028 None:intergenic 30.0%
! GCACATTTGAATAAACCTTT+TGG - chr3_3:78774017-78774036 None:intergenic 30.0%
CTACATTTGAACAAACCTTT+GGG - chr3_3:78774092-78774111 None:intergenic 30.0%
! GTACATTTGAATGAACCTTT+TGG - chr3_3:78774167-78774186 None:intergenic 30.0%
ACACATTTGAATGAACCTTT+GGG - chr3_3:78774242-78774261 None:intergenic 30.0%
TTTGTCAAAGAATTACCAGT+AGG - chr3_3:78774339-78774358 None:intergenic 30.0%
! ACACATTTGAATGAACCTTT+TGG - chr3_3:78774242-78774261 None:intergenic 30.0%
! GCACATTTGAATGAACTTTT+GGG - chr3_3:78775214-78775233 None:intergenic 30.0%
AAGAAATTAATAGGGCACAT+TGG - chr3_3:78775378-78775397 None:intergenic 30.0%
GCATGTCGTAAGAAATTAAT+AGG - chr3_3:78775387-78775406 None:intergenic 30.0%
! TTTTTGTCTATTGTCTCAAC+AGG + chr3_3:78775459-78775478 Msa0475530:intron 30.0%
! TTCAAATTTTACTCCCAACA+AGG + chr3_3:78775723-78775742 Msa0475530:CDS 30.0%
TAGAAATTAAACACAGGTAG+TGG + chr3_3:78775910-78775929 Msa0475530:three_prime_UTR 30.0%
AGAAATTAAACACAGGTAGT+GGG + chr3_3:78775911-78775930 Msa0475530:three_prime_UTR 30.0%
!!! TATGGTATCTAGTGGATTTT+AGG + chr3_3:78775934-78775953 Msa0475530:three_prime_UTR 30.0%
ACGGGAAAATTTACAGTCAT+TGG - chr3_3:78771600-78771619 Msa0475520:CDS 35.0%
!! TCTTTGAAGTTCGTGATGAA+TGG - chr3_3:78771626-78771645 None:intergenic 35.0%
!! TACCTTGGTTTCTAAAGCAT+CGG - chr3_3:78771736-78771755 None:intergenic 35.0%
! CCATGCTTTTCTTTTCCTTT+TGG - chr3_3:78771781-78771800 None:intergenic 35.0%
CCAAAAGGAAAAGAAAAGCA+TGG + chr3_3:78771778-78771797 Msa0475530:CDS 35.0%
TGTGTTGCACTTCTCTTAAT+AGG - chr3_3:78771891-78771910 None:intergenic 35.0%
TGTGTAATCTGTGATGGTTT+AGG + chr3_3:78772341-78772360 Msa0475530:intron 35.0%
!! AGCGCTTTAAGAAAGAAAGA+CGG + chr3_3:78772510-78772529 Msa0475530:CDS 35.0%
CATGTCAAGGGCTAAATTTA+AGG - chr3_3:78772616-78772635 None:intergenic 35.0%
! CTTTTTGAATGGCATGTCAA+GGG - chr3_3:78772628-78772647 None:intergenic 35.0%
! ACTTTTTGAATGGCATGTCA+AGG - chr3_3:78772629-78772648 None:intergenic 35.0%
AGAGTCAAATGACAATTACC+AGG - chr3_3:78772675-78772694 None:intergenic 35.0%
CAAATACAGCTAGCAAATTC+TGG - chr3_3:78772732-78772751 None:intergenic 35.0%
CATAAAGTTAACCTGAGACT+CGG - chr3_3:78772807-78772826 None:intergenic 35.0%
ATGATTGTCTTCTCTAGACT+TGG + chr3_3:78772845-78772864 Msa0475530:intron 35.0%
TGATTGTCTTCTCTAGACTT+GGG + chr3_3:78772846-78772865 Msa0475530:intron 35.0%
CCAAATCTCTTTCAATGGTT+TGG - chr3_3:78772914-78772933 None:intergenic 35.0%
CCAAACCATTGAAAGAGATT+TGG + chr3_3:78772911-78772930 Msa0475530:intron 35.0%
AACCATTGAAAGAGATTTGG+GGG + chr3_3:78772914-78772933 Msa0475530:intron 35.0%
! GTTGCCATTGATTGTATCTA+AGG + chr3_3:78772953-78772972 Msa0475530:intron 35.0%
GTAGCAAAGAACACAAACTA+CGG - chr3_3:78773141-78773160 None:intergenic 35.0%
!! ATGTTGGCTCATAAATCTTC+TGG + chr3_3:78773312-78773331 Msa0475530:intron 35.0%
TAACTTATATGGTTGCAGGT+AGG + chr3_3:78773440-78773459 Msa0475530:intron 35.0%
TGGTACAGAACTATGAATTG+TGG - chr3_3:78773518-78773537 None:intergenic 35.0%
!!! CTTTGAGACTGAATTTTCAG+AGG - chr3_3:78773593-78773612 None:intergenic 35.0%
! GCACATTTGAACGAATCTTT+TGG - chr3_3:78773795-78773814 None:intergenic 35.0%
ACATTTACATTTGGCTGAAC+AGG - chr3_3:78773865-78773884 None:intergenic 35.0%
!! GAATGAACCTTTTGGTTAGA+AGG - chr3_3:78773934-78773953 None:intergenic 35.0%
! GCACATTTGAATGAACCTTT+TGG - chr3_3:78773942-78773961 None:intergenic 35.0%
GTTCATTCAAATGTGCATGT+TGG + chr3_3:78773946-78773965 Msa0475530:CDS 35.0%
GCTACATTTGAACAAACCTT+TGG - chr3_3:78774093-78774112 None:intergenic 35.0%
TGTCTTTGGCAAAGAATTAC+CGG - chr3_3:78774118-78774137 None:intergenic 35.0%
!! GAATGAACCTTTTGGTTAGA+AGG - chr3_3:78773934-78773953 None:intergenic 35.0%
GTTCATTCAAATGTACTTGC+CGG + chr3_3:78774171-78774190 Msa0475530:CDS 35.0%
TGTCTTTGTCAAAGAACTAC+CGG - chr3_3:78773821-78773840 None:intergenic 35.0%
GACACATTTGAATGAACCTT+TGG - chr3_3:78774243-78774262 None:intergenic 35.0%
GTTCATTCAAATGTGTCTAC+TGG + chr3_3:78774246-78774265 Msa0475530:CDS 35.0%
!! GAATGAACCTTTTGGTTAGA+AGG - chr3_3:78773934-78773953 None:intergenic 35.0%
! GCACATTTGAATGAACCTTT+TGG - chr3_3:78773942-78773961 None:intergenic 35.0%
!! GAATGAACCTTTTGGTTAGA+AGG - chr3_3:78773934-78773953 None:intergenic 35.0%
TGTCTTCGTCAAAGAATTAC+CGG - chr3_3:78774418-78774437 None:intergenic 35.0%
!! AAATGAACCTTTTGGTTGGA+AGG - chr3_3:78774459-78774478 None:intergenic 35.0%
GTTCATTTAAATGTGTCTGC+CGG + chr3_3:78774471-78774490 Msa0475530:CDS 35.0%
TGTCTTCGTCAAAGAATTAC+CGG - chr3_3:78774418-78774437 None:intergenic 35.0%
! TGGTTTGCCTTCTAATCAAA+AGG + chr3_3:78774524-78774543 Msa0475530:CDS 35.0%
!! GAATGAGCCTTTTGATTAGA+AGG - chr3_3:78774534-78774553 None:intergenic 35.0%
! TAGTTTGCCTTCTAACCAAA+AGG + chr3_3:78774746-78774765 Msa0475530:CDS 35.0%
! GTACATTTGAATGGACCTTT+TGG - chr3_3:78774764-78774783 None:intergenic 35.0%
GAAGACAAACCAGAAGAAAT+GGG - chr3_3:78774813-78774832 None:intergenic 35.0%
AGAAGACAAACCAGAAGAAA+TGG - chr3_3:78774814-78774833 None:intergenic 35.0%
TTTGTCAAAGAATTACCAGC+AGG - chr3_3:78774936-78774955 None:intergenic 35.0%
TTTGACAAAGACACCCATTT+CGG + chr3_3:78773759-78773778 Msa0475530:CDS 35.0%
GCACATTTGAATGAACCTTT+GGG - chr3_3:78773942-78773961 None:intergenic 35.0%
GCACATTTGAATGAACCTTT+GGG - chr3_3:78773942-78773961 None:intergenic 35.0%
! TTTGTCAAAGTATTACCAGC+AGG - chr3_3:78775086-78775105 None:intergenic 35.0%
ATTTGAATGAACCTTTGGGT+CGG - chr3_3:78774238-78774257 None:intergenic 35.0%
GCACATTTGAATGAACCTTT+GGG - chr3_3:78773942-78773961 None:intergenic 35.0%
TTTGTCAAAGAATTACCAGC+AGG - chr3_3:78774936-78774955 None:intergenic 35.0%
! GGCACATTTGAATGAACTTT+TGG - chr3_3:78775215-78775234 None:intergenic 35.0%
TTAGTCAAAGAATTACCAGC+AGG - chr3_3:78775236-78775255 None:intergenic 35.0%
! GAATAAACCTTTTGGTCAGA+AGG - chr3_3:78775356-78775375 None:intergenic 35.0%
! GCACATTGGAATAAACCTTT+TGG - chr3_3:78775364-78775383 None:intergenic 35.0%
! TTTTTCCACTTCTTTCACAG+AGG - chr3_3:78775497-78775516 None:intergenic 35.0%
! TTTCACATTCTCTTTTGGTG+TGG - chr3_3:78775539-78775558 None:intergenic 35.0%
ACCAAAAGAGAATGTGAAAG+AGG + chr3_3:78775540-78775559 Msa0475530:CDS 35.0%
! TCCTCTTTCACATTCTCTTT+TGG - chr3_3:78775544-78775563 None:intergenic 35.0%
!! TATCCAGTTTGCTATTTACC+TGG - chr3_3:78775591-78775610 None:intergenic 35.0%
GGTAAATAGCAAACTGGATA+AGG + chr3_3:78775591-78775610 Msa0475530:CDS 35.0%
TGTTCCAAAACTTTCTCAGT+GGG - chr3_3:78775649-78775668 None:intergenic 35.0%
TAACAGAACTTGTCTTGTCT+TGG - chr3_3:78775798-78775817 None:intergenic 35.0%
! GCAAATTTTTACAGCATGAG+TGG + chr3_3:78776026-78776045 Msa0475530:three_prime_UTR 35.0%
AGTTCGTGATGAATGGCAAA+CGG - chr3_3:78771619-78771638 None:intergenic 40.0%
GACTGATCCATCAAGATAGA+GGG - chr3_3:78771657-78771676 None:intergenic 40.0%
TGACTGATCCATCAAGATAG+AGG - chr3_3:78771658-78771677 None:intergenic 40.0%
!! AACCGATGCTTTAGAAACCA+AGG + chr3_3:78771731-78771750 Msa0475530:CDS 40.0%
GAAACCAAGGTAACAATTGG+TGG + chr3_3:78771744-78771763 Msa0475530:CDS 40.0%
!! TCTTTTCCTTTTGGAAGCTG+CGG - chr3_3:78771772-78771791 None:intergenic 40.0%
! GAAAAGAAAAGCATGGTCAG+AGG + chr3_3:78771785-78771804 Msa0475530:CDS 40.0%
!! AGGAAGAGGACAATTTGCTA+CGG + chr3_3:78771805-78771824 Msa0475530:CDS 40.0%
AAGTGCAACACAATTGTCTC+AGG + chr3_3:78771899-78771918 Msa0475530:CDS 40.0%
TGGTATAGATAGATCTGCCA+AGG - chr3_3:78771983-78772002 None:intergenic 40.0%
CTCCCAATAATAGATCTAGC+TGG - chr3_3:78772003-78772022 None:intergenic 40.0%
TATTGTAGTTGTGCCTGTTG+AGG + chr3_3:78772047-78772066 Msa0475530:intron 40.0%
TAAATATGGTCAGCCTCAAC+AGG - chr3_3:78772063-78772082 None:intergenic 40.0%
TACTGGAATCTGATGACTGA+TGG + chr3_3:78772211-78772230 Msa0475530:intron 40.0%
TAAACCGTTGTCATCTAGTC+AGG + chr3_3:78772248-78772267 Msa0475530:intron 40.0%
TACATGTAAAACTCCGTTGC+CGG - chr3_3:78772316-78772335 None:intergenic 40.0%
!! TGTTTTGCGTTTAGTTTCGC+AGG + chr3_3:78772383-78772402 Msa0475530:intron 40.0%
TGGTCTATCCAAATACTCAG+AGG + chr3_3:78772484-78772503 Msa0475530:intron 40.0%
TCTATCCAAATACTCAGAGG+TGG + chr3_3:78772487-78772506 Msa0475530:intron 40.0%
! GGAGCAGCTAACTTTTTGAA+TGG - chr3_3:78772639-78772658 None:intergenic 40.0%
TTCAAAAAGTTAGCTGCTCC+TGG + chr3_3:78772639-78772658 Msa0475530:CDS 40.0%
!! CAGCTAGCAAATTCTGGAAT+TGG - chr3_3:78772726-78772745 None:intergenic 40.0%
TCTTCTCTAGACTTGGGAAT+AGG + chr3_3:78772852-78772871 Msa0475530:intron 40.0%
TTCCCCCAAATCTCTTTCAA+TGG - chr3_3:78772919-78772938 None:intergenic 40.0%
TGAAAGAGATTTGGGGGAAA+AGG + chr3_3:78772920-78772939 Msa0475530:intron 40.0%
CATTTCTTGCAGTTCATTGC+AGG + chr3_3:78773053-78773072 Msa0475530:intron 40.0%
!! TTGCAGGAGTTTTAATGCCT+TGG + chr3_3:78773069-78773088 Msa0475530:intron 40.0%
! GAATTTTCAGAGGCCAGTTT+GGG - chr3_3:78773583-78773602 None:intergenic 40.0%
! TGAATTTTCAGAGGCCAGTT+TGG - chr3_3:78773584-78773603 None:intergenic 40.0%
AAACCTGCCATTGTTCATTC+TGG + chr3_3:78773640-78773659 Msa0475530:CDS 40.0%
TTGTGCTCCAGAATGAACAA+TGG - chr3_3:78773650-78773669 None:intergenic 40.0%
GGTTTCGCAAGCAAAAAATG+TGG + chr3_3:78773711-78773730 Msa0475530:CDS 40.0%
ACAAAGACACCCATTTCTTC+TGG + chr3_3:78773763-78773782 Msa0475530:CDS 40.0%
TGGTGCAAACCAGAAGAAAT+GGG - chr3_3:78773775-78773794 None:intergenic 40.0%
TTGGTGCAAACCAGAAGAAA+TGG - chr3_3:78773776-78773795 None:intergenic 40.0%
TTTGTCAAAGAACTACCAGC+AGG - chr3_3:78773817-78773836 None:intergenic 40.0%
ACAAAGACACCCATTTCTAC+TGG + chr3_3:78773832-78773851 Msa0475530:CDS 40.0%
CCAAATGTAAATGTGCCTGA+CGG + chr3_3:78773871-78773890 Msa0475530:CDS 40.0%
! TGGTTTGCCTTCTAACCAAA+AGG + chr3_3:78773924-78773943 Msa0475530:CDS 40.0%
TGTCTTCGTCAAAGAACTAG+CGG - chr3_3:78774043-78774062 None:intergenic 40.0%
GTTTGTTCAAATGTAGCTGC+CGG + chr3_3:78774096-78774115 Msa0475530:CDS 40.0%
! TGGTTTGCCTTCTAACCAAA+AGG + chr3_3:78773924-78773943 Msa0475530:CDS 40.0%
! GAATGAACCTTTGGGTTAGA+AGG - chr3_3:78774234-78774253 None:intergenic 40.0%
GAAGGCAAACCAACAGAAAT+GGG - chr3_3:78774291-78774310 None:intergenic 40.0%
AGAAGGCAAACCAACAGAAA+TGG - chr3_3:78774292-78774311 None:intergenic 40.0%
! TGGTTTGCCTTCTAACCAAA+AGG + chr3_3:78773924-78773943 Msa0475530:CDS 40.0%
GTTCATTCAAATGTGCCTAC+TGG + chr3_3:78774321-78774340 Msa0475530:CDS 40.0%
ACAAAGACACCCATTTCTTC+TGG + chr3_3:78773763-78773782 Msa0475530:CDS 40.0%
GAAGGCAAACCAGAAGAAAT+GGG - chr3_3:78774366-78774385 None:intergenic 40.0%
AGAAGGCAAACCAGAAGAAA+TGG - chr3_3:78774367-78774386 None:intergenic 40.0%
! TGGTTTGCCTTCTAACCAAA+AGG + chr3_3:78773924-78773943 Msa0475530:CDS 40.0%
GTTCATTCAAATGTGTCTGC+CGG + chr3_3:78774396-78774415 Msa0475530:CDS 40.0%
GAAGGCAAACCAACAGAAAT+GGG - chr3_3:78774291-78774310 None:intergenic 40.0%
AGAAGGCAAACCAACAGAAA+TGG - chr3_3:78774292-78774311 None:intergenic 40.0%
! TGGTTTGCCTTCTAACCAAA+AGG + chr3_3:78773924-78773943 Msa0475530:CDS 40.0%
!! GAATGAGCCTTTTGGTTAGA+AGG - chr3_3:78774609-78774628 None:intergenic 40.0%
! ACACGTTTGAATGAGCCTTT+TGG - chr3_3:78774617-78774636 None:intergenic 40.0%
GAAGGCAAACCAACAGAAAT+GGG - chr3_3:78774291-78774310 None:intergenic 40.0%
AGAAGGCAAACCAACAGAAA+TGG - chr3_3:78774292-78774311 None:intergenic 40.0%
! TGGTTTGCCTTCTGACAAAA+AGG + chr3_3:78774674-78774693 Msa0475530:CDS 40.0%
GAAGGCAAACTAGCAGAAAT+GGG - chr3_3:78774738-78774757 None:intergenic 40.0%
AGAAGGCAAACTAGCAGAAA+TGG - chr3_3:78774739-78774758 None:intergenic 40.0%
!! GAATGGACCTTTTGGTTAGA+AGG - chr3_3:78774756-78774775 None:intergenic 40.0%
GTCCATTCAAATGTACCTGT+CGG + chr3_3:78774768-78774787 Msa0475530:CDS 40.0%
TACCGACAGGTACATTTGAA+TGG - chr3_3:78774773-78774792 None:intergenic 40.0%
! TGGTTTGTCTTCTGACAAGA+AGG + chr3_3:78774821-78774840 Msa0475530:CDS 40.0%
TTTGTCAGAGAACTAGCAAC+AGG - chr3_3:78774861-78774880 None:intergenic 40.0%
ACAAAGACACCCATTTATGC+TGG + chr3_3:78774876-78774895 Msa0475530:CDS 40.0%
GAAGGCAAACCAGCATAAAT+GGG - chr3_3:78774888-78774907 None:intergenic 40.0%
!! CATTTATGCTGGTTTGCCTT+CGG + chr3_3:78774887-78774906 Msa0475530:CDS 40.0%
GCACATTTGGATGAACCTTT+GGG - chr3_3:78774914-78774933 None:intergenic 40.0%
GGCACATTTGAATGAACCTT+TGG - chr3_3:78774318-78774337 None:intergenic 40.0%
TTTGTCACAGAATTACCAGC+AGG - chr3_3:78775011-78775030 None:intergenic 40.0%
TGTGACAAAGACACCCATTT+CGG + chr3_3:78775022-78775041 Msa0475530:CDS 40.0%
GGCACATTTGAATGAACCTT+TGG - chr3_3:78774318-78774337 None:intergenic 40.0%
GGCACATTTGAATGAACCTT+TGG - chr3_3:78774318-78774337 None:intergenic 40.0%
!! GAATGAACTTTTGGGTCTGA+AGG - chr3_3:78775206-78775225 None:intergenic 40.0%
TTGACTAAGACACCCATTTC+TGG + chr3_3:78775248-78775267 Msa0475530:CDS 40.0%
GCACGTTTGAATGAACCATT+GGG - chr3_3:78775289-78775308 None:intergenic 40.0%
TTTGTCAAAGAATTGCCAGC+AGG - chr3_3:78775311-78775330 None:intergenic 40.0%
TGTTACCTCTGTGAAAGAAG+TGG + chr3_3:78775489-78775508 Msa0475530:CDS 40.0%
AGCTTCTACATCTACTACTG+AGG + chr3_3:78775564-78775583 Msa0475530:CDS 40.0%
GCTTCTACATCTACTACTGA+GGG + chr3_3:78775565-78775584 Msa0475530:CDS 40.0%
GTGTTCCAAAACTTTCTCAG+TGG - chr3_3:78775650-78775669 None:intergenic 40.0%
CAATGCCTCAAAATCCTGTA+GGG + chr3_3:78775674-78775693 Msa0475530:CDS 40.0%
! ATTGTCATTTCCACTCTCAG+TGG - chr3_3:78775749-78775768 None:intergenic 40.0%
!! TGACGGCATTCATCTTGTTT+TGG - chr3_3:78775868-78775887 None:intergenic 40.0%
AAACAAGATGAATGCCGTCA+AGG + chr3_3:78775868-78775887 Msa0475530:CDS 40.0%
!! TTAAACACAGGTAGTGGGTA+TGG + chr3_3:78775916-78775935 Msa0475530:three_prime_UTR 40.0%
GGTAGATTCACTTAGTGTGC+GGG - chr3_3:78771553-78771572 Msa0475520:intron 45.0%
GGGTAGATTCACTTAGTGTG+CGG - chr3_3:78771554-78771573 Msa0475520:intron 45.0%
GTTCGTGATGAATGGCAAAC+GGG - chr3_3:78771618-78771637 None:intergenic 45.0%
!! GCATCGGTTGATGATACAGT+TGG - chr3_3:78771720-78771739 None:intergenic 45.0%
GGTACCACCAATTGTTACCT+TGG - chr3_3:78771751-78771770 None:intergenic 45.0%
! AAAAGCATGGTCAGAGGAAG+AGG + chr3_3:78771791-78771810 Msa0475530:CDS 45.0%
!! GGAAGAGGACAATTTGCTAC+GGG + chr3_3:78771806-78771825 Msa0475530:CDS 45.0%
TACGGGATGCTGTTCAGAAA+TGG + chr3_3:78771823-78771842 Msa0475530:CDS 45.0%
ACGGGATGCTGTTCAGAAAT+GGG + chr3_3:78771824-78771843 Msa0475530:CDS 45.0%
CTGTTCAGAAATGGGGTGAA+GGG + chr3_3:78771832-78771851 Msa0475530:CDS 45.0%
AGAAATGGGGTGAAGGGAAT+TGG + chr3_3:78771838-78771857 Msa0475530:CDS 45.0%
GAAATGGGGTGAAGGGAATT+GGG + chr3_3:78771839-78771858 Msa0475530:CDS 45.0%
AATTGGGCTACCATGGCAAA+AGG + chr3_3:78771855-78771874 Msa0475530:CDS 45.0%
! AAAGCTGTCTCCTTTTGCCA+TGG - chr3_3:78771868-78771887 None:intergenic 45.0%
CTGACCTGACTAGATGACAA+CGG - chr3_3:78772255-78772274 None:intergenic 45.0%
ACATGTAAAACTCCGTTGCC+GGG - chr3_3:78772315-78772334 None:intergenic 45.0%
ACAGTATACTGCCGAACAGT+TGG + chr3_3:78772578-78772597 Msa0475530:CDS 45.0%
! AAGTTAACCTGAGACTCGGT+CGG - chr3_3:78772803-78772822 None:intergenic 45.0%
ACTTGGGAATAGGCTGTTAG+TGG + chr3_3:78772862-78772881 Msa0475530:intron 45.0%
AACTGCAAGAAATGACCTGC+AGG - chr3_3:78773047-78773066 None:intergenic 45.0%
AGAGAATGGGAAAGTCACCA+AGG - chr3_3:78773089-78773108 None:intergenic 45.0%
TCAAGTGCAGCCTCGTAATA+CGG + chr3_3:78773483-78773502 Msa0475530:CDS 45.0%
AAATGCTGCGCCACAATTGA+TGG + chr3_3:78773690-78773709 Msa0475530:CDS 45.0%
GCTTGCGAAACCATCAATTG+TGG - chr3_3:78773703-78773722 None:intergenic 45.0%
!! TTTGTCAAAGTACTGCCAGC+AGG - chr3_3:78773748-78773767 None:intergenic 45.0%
ATTCGTTCAAATGTGCCTGC+TGG + chr3_3:78773799-78773818 Msa0475530:CDS 45.0%
! GACACCCATTTCTACTGGTT+TGG + chr3_3:78773837-78773856 Msa0475530:CDS 45.0%
GGAGCCAAACCAGTAGAAAT+GGG - chr3_3:78773844-78773863 None:intergenic 45.0%
AGGAGCCAAACCAGTAGAAA+TGG - chr3_3:78773845-78773864 None:intergenic 45.0%
CCGTCAGGCACATTTACATT+TGG - chr3_3:78773874-78773893 None:intergenic 45.0%
ATGTAAATGTGCCTGACGGT+AGG + chr3_3:78773875-78773894 Msa0475530:CDS 45.0%
CTTGATAAAGACCTACCGTC+AGG - chr3_3:78773889-78773908 None:intergenic 45.0%
CTGACGGTAGGTCTTTATCA+AGG + chr3_3:78773887-78773906 Msa0475530:CDS 45.0%
GAAGGCAAACCAGCAGAAAT+GGG - chr3_3:78773916-78773935 None:intergenic 45.0%
AGAAGGCAAACCAGCAGAAA+TGG - chr3_3:78773917-78773936 None:intergenic 45.0%
TGGCATGCCTTCTAACCAAA+AGG + chr3_3:78773999-78774018 Msa0475530:CDS 45.0%
GAACAAACCTTTGGGTCAGA+AGG - chr3_3:78774084-78774103 None:intergenic 45.0%
GAAGGCAAACCAGCAGAAAT+GGG - chr3_3:78773916-78773935 None:intergenic 45.0%
AGAAGGCAAACCAGCAGAAA+TGG - chr3_3:78773917-78773936 None:intergenic 45.0%
ACAAAGACACCCATTTCTGC+TGG + chr3_3:78774204-78774223 Msa0475530:CDS 45.0%
GAAGGCAAACCAGCAGAAAT+GGG - chr3_3:78773916-78773935 None:intergenic 45.0%
AGAAGGCAAACCAGCAGAAA+TGG - chr3_3:78773917-78773936 None:intergenic 45.0%
! TGGTTTGCCTTCTAACCCAA+AGG + chr3_3:78774224-78774243 Msa0475530:CDS 45.0%
ACAAAGCCACCCATTTCTGT+TGG + chr3_3:78774279-78774298 Msa0475530:CDS 45.0%
GAAGGCAAACCAGCAGAAAT+GGG - chr3_3:78773916-78773935 None:intergenic 45.0%
! TGGTTTGCCTTCCAACCAAA+AGG + chr3_3:78774449-78774468 Msa0475530:CDS 45.0%
GAAGGCAAACCAGCAGTAAT+GGG - chr3_3:78774516-78774535 None:intergenic 45.0%
AGAAGGCAAACCAGCAGTAA+TGG - chr3_3:78774517-78774536 None:intergenic 45.0%
CGTCTTCGTCAAAGAACTTC+CGG - chr3_3:78774568-78774587 None:intergenic 45.0%
TTCGTCAAAGAACTACCGAC+AGG - chr3_3:78774786-78774805 None:intergenic 45.0%
ACGAAGACACCCATTTCTTC+TGG + chr3_3:78774801-78774820 Msa0475530:CDS 45.0%
CGAAGGCAAACCAGCATAAA+TGG - chr3_3:78774889-78774908 None:intergenic 45.0%
GGCACATTTGGATGAACCTT+TGG - chr3_3:78774915-78774934 None:intergenic 45.0%
GAATTACCAGCAGGCACATT+TGG - chr3_3:78774927-78774946 None:intergenic 45.0%
GAATGAACCTTTGGGTCAGA+AGG - chr3_3:78774981-78775000 None:intergenic 45.0%
GTTCATTCAAATGTGCCTGC+TGG + chr3_3:78774993-78775012 Msa0475530:CDS 45.0%
GAATGAACCTTTGGGTCAGA+AGG - chr3_3:78774981-78775000 None:intergenic 45.0%
GTTCATTCAAATGTGCCTGC+TGG + chr3_3:78774993-78775012 Msa0475530:CDS 45.0%
GTTCATTCAAATGTGCCTGC+TGG + chr3_3:78774993-78775012 Msa0475530:CDS 45.0%
GAAGGAAAACCAGCGGAAAT+GGG - chr3_3:78775188-78775207 None:intergenic 45.0%
TGAAGGAAAACCAGCGGAAA+TGG - chr3_3:78775189-78775208 None:intergenic 45.0%
GTTCATTCAAATGTGCCTGC+TGG + chr3_3:78774993-78775012 Msa0475530:CDS 45.0%
GAAGGCAGACAACCAGAAAT+GGG - chr3_3:78775263-78775282 None:intergenic 45.0%
AGAAGGCAGACAACCAGAAA+TGG - chr3_3:78775264-78775283 None:intergenic 45.0%
GAATGAACCATTGGGTCAGA+AGG - chr3_3:78775281-78775300 None:intergenic 45.0%
GGCACGTTTGAATGAACCAT+TGG - chr3_3:78775290-78775309 None:intergenic 45.0%
GACAAAGACACCCATTTCCA+CGG + chr3_3:78775325-78775344 Msa0475530:CDS 45.0%
ACAAAGACACCCATTTCCAC+GGG + chr3_3:78775326-78775345 Msa0475530:CDS 45.0%
ATAGCAAACTGGATAAGGCG+AGG + chr3_3:78775596-78775615 Msa0475530:CDS 45.0%
! CATGCCCACTGAGAAAGTTT+TGG + chr3_3:78775642-78775661 Msa0475530:CDS 45.0%
GCAATGCCTCAAAATCCTGT+AGG + chr3_3:78775673-78775692 Msa0475530:CDS 45.0%
! TCACACCCTACAGGATTTTG+AGG - chr3_3:78775682-78775701 None:intergenic 45.0%
AGATGAATGCCGTCAAGGTT+TGG + chr3_3:78775873-78775892 Msa0475530:CDS 45.0%
!! GTAGTGGGTATGGTATCTAG+TGG + chr3_3:78775926-78775945 Msa0475530:three_prime_UTR 45.0%
CTCAATTGTTGCGCTACTGG+GGG - chr3_3:78771574-78771593 Msa0475520:CDS 50.0%
CCTCAATTGTTGCGCTACTG+GGG - chr3_3:78771575-78771594 Msa0475520:CDS 50.0%
GCCTCAATTGTTGCGCTACT+GGG - chr3_3:78771576-78771595 Msa0475520:CDS 50.0%
AGCCTCAATTGTTGCGCTAC+TGG - chr3_3:78771577-78771596 Msa0475520:CDS 50.0%
TTCGCAGCCCTCTATCTTGA+TGG + chr3_3:78771647-78771666 Msa0475530:CDS 50.0%
ACAGTTGGCAGTGTCTGTCT+CGG - chr3_3:78771705-78771724 None:intergenic 50.0%
CGGGATGCTGTTCAGAAATG+GGG + chr3_3:78771825-78771844 Msa0475530:CDS 50.0%
GCTGTTCAGAAATGGGGTGA+AGG + chr3_3:78771831-78771850 Msa0475530:CDS 50.0%
TGAAGGGAATTGGGCTACCA+TGG + chr3_3:78771848-78771867 Msa0475530:CDS 50.0%
CTCTTCTAACATGGCAGCCT+TGG + chr3_3:78771963-78771982 Msa0475530:intron 50.0%
CGTTGTCATCTAGTCAGGTC+AGG + chr3_3:78772253-78772272 Msa0475530:intron 50.0%
GATTTGAACCCGGGAGAACT+GGG - chr3_3:78772293-78772312 None:intergenic 50.0%
TTCGGCAGTATACTGTGCGT+TGG - chr3_3:78772574-78772593 None:intergenic 50.0%
GTGACGAGTTGCCAACTGTT+CGG - chr3_3:78772592-78772611 None:intergenic 50.0%
TTACCAGGATCAGTCACTCC+AGG - chr3_3:78772660-78772679 None:intergenic 50.0%
AATGACCTGCAGGATGGTGA+CGG - chr3_3:78773037-78773056 None:intergenic 50.0%
GCAAGAAATGACCTGCAGGA+TGG - chr3_3:78773043-78773062 None:intergenic 50.0%
TTCTGTACCACCTCAACGTC+CGG + chr3_3:78773528-78773547 Msa0475530:CDS 50.0%
!! GAACCACAAGCTTGTTGAGC+CGG - chr3_3:78773550-78773569 None:intergenic 50.0%
TTCCCCTACGAAACCCAAAC+TGG + chr3_3:78773567-78773586 Msa0475530:CDS 50.0%
! AGGCCAGTTTGGGTTTCGTA+GGG - chr3_3:78773573-78773592 None:intergenic 50.0%
GCTCCAGAATGAACAATGGC+AGG - chr3_3:78773646-78773665 None:intergenic 50.0%
TCAAGGACACCCATTTCTGC+TGG + chr3_3:78773904-78773923 Msa0475530:CDS 50.0%
ACGAAGACACCCATTTCTGC+TGG + chr3_3:78773979-78773998 Msa0475530:CDS 50.0%
! GAAGGCATGCCAGCAGAAAT+GGG - chr3_3:78773991-78774010 None:intergenic 50.0%
! AGAAGGCATGCCAGCAGAAA+TGG - chr3_3:78773992-78774011 None:intergenic 50.0%
TTCGTCAAAGAACTAGCGGC+AGG - chr3_3:78774039-78774058 None:intergenic 50.0%
ACGAAGACACCCAATTCTGC+CGG + chr3_3:78774054-78774073 Msa0475530:CDS 50.0%
GAAGGCAAACCGGCAGAATT+GGG - chr3_3:78774066-78774085 None:intergenic 50.0%
AGAAGGCAAACCGGCAGAAT+TGG - chr3_3:78774067-78774086 None:intergenic 50.0%
CTTTGGGTCAGAAGGCAAAC+CGG - chr3_3:78774076-78774095 None:intergenic 50.0%
CCAGCAGAAATGGGTGTCTT+TGG - chr3_3:78773982-78774001 None:intergenic 50.0%
CCAAAGACACCCATTTCTGC+TGG + chr3_3:78774129-78774148 Msa0475530:CDS 50.0%
GGCAAACCAACAGAAATGGG+TGG - chr3_3:78774288-78774307 None:intergenic 50.0%
ACGAAGACACCCATTTCTGC+TGG + chr3_3:78773979-78773998 Msa0475530:CDS 50.0%
GGAAGGCAAACCAGCAGAAA+TGG - chr3_3:78774442-78774461 None:intergenic 50.0%
ACGAAGACACCCATTACTGC+TGG + chr3_3:78774504-78774523 Msa0475530:CDS 50.0%
GCTCATTCAAACGTGCATGC+CGG + chr3_3:78774546-78774565 Msa0475530:CDS 50.0%
ACGAAGACGCCCATTTCTGT+TGG + chr3_3:78774579-78774598 Msa0475530:CDS 50.0%
GCTCATTCAAACGTGTCTGC+CGG + chr3_3:78774621-78774640 Msa0475530:CDS 50.0%
CGTCTTCGTCAAAGAACTGC+CGG - chr3_3:78774643-78774662 None:intergenic 50.0%
ACGAAGACGCCCATTTCTGT+TGG + chr3_3:78774579-78774598 Msa0475530:CDS 50.0%
GTTCATCCAAATGTGCCTGC+TGG + chr3_3:78774918-78774937 Msa0475530:CDS 50.0%
ACAAAGACACCCATTTCGGC+TGG + chr3_3:78774951-78774970 Msa0475530:CDS 50.0%
GAAGGCAAACCAGCCGAAAT+GGG - chr3_3:78774963-78774982 None:intergenic 50.0%
AGAAGGCAAACCAGCCGAAA+TGG - chr3_3:78774964-78774983 None:intergenic 50.0%
! TGGTTTGCCTTCTGACCCAA+AGG + chr3_3:78774971-78774990 Msa0475530:CDS 50.0%
GAAGGCAAAGCAGCCGAAAT+GGG - chr3_3:78775038-78775057 None:intergenic 50.0%
AGAAGGCAAAGCAGCCGAAA+TGG - chr3_3:78775039-78775058 None:intergenic 50.0%
TGCTTTGCCTTCTGACCCAA+AGG + chr3_3:78775046-78775065 Msa0475530:CDS 50.0%
ACAAAGACACCCATTTCCGC+TGG + chr3_3:78775101-78775120 Msa0475530:CDS 50.0%
GAAGGCAAACCAGCGGAAAT+GGG - chr3_3:78775113-78775132 None:intergenic 50.0%
GAATGAACCTTTGGGTCGGA+AGG - chr3_3:78775131-78775150 None:intergenic 50.0%
ACAAAGACACCCATTTCCGC+TGG + chr3_3:78775101-78775120 Msa0475530:CDS 50.0%
TGGGTCTGAAGGAAAACCAG+CGG - chr3_3:78775195-78775214 None:intergenic 50.0%
TTGTCTGCCTTCTGACCCAA+TGG + chr3_3:78775271-78775290 Msa0475530:CDS 50.0%
GTTCATTCAAACGTGCCTGC+TGG + chr3_3:78775293-78775312 Msa0475530:CDS 50.0%
GAAGGCAAACCCGTGGAAAT+GGG - chr3_3:78775338-78775357 None:intergenic 50.0%
AGAAGGCAAACCCGTGGAAA+TGG - chr3_3:78775339-78775358 None:intergenic 50.0%
GGGTTTGCCTTCTGACCAAA+AGG + chr3_3:78775346-78775365 Msa0475530:CDS 50.0%
GAAAAAAGACTCGCTGAGCC+TGG + chr3_3:78775511-78775530 Msa0475530:CDS 50.0%
!! TTCTCTTTTGGTGTGGAGCC+AGG - chr3_3:78775532-78775551 None:intergenic 50.0%
TACATCTACTACTGAGGGCC+AGG + chr3_3:78775570-78775589 Msa0475530:CDS 50.0%
GGGCCAGGTAAATAGCAAAC+TGG + chr3_3:78775585-78775604 Msa0475530:CDS 50.0%
ACGGCACTTCCAAACCTTGA+CGG - chr3_3:78775885-78775904 None:intergenic 50.0%
CCCCAGTAGCGCAACAATTG+AGG + chr3_3:78771572-78771591 Msa0475530:five_prime_UTR 55.0%
GTCTGTCTCGGGACAGTAAC+TGG - chr3_3:78771693-78771712 None:intergenic 55.0%
CAGTTGGCAGTGTCTGTCTC+GGG - chr3_3:78771704-78771723 None:intergenic 55.0%
GTGGTACCGCAGCTTCCAAA+AGG + chr3_3:78771763-78771782 Msa0475530:CDS 55.0%
TCTAGTCAGGTCAGGATGCC+TGG + chr3_3:78772261-78772280 Msa0475530:intron 55.0%
CTAGTCAGGTCAGGATGCCT+GGG + chr3_3:78772262-78772281 Msa0475530:intron 55.0%
TGGGTATCACCCAGTTCTCC+CGG + chr3_3:78772281-78772300 Msa0475530:intron 55.0%
GGATTTGAACCCGGGAGAAC+TGG - chr3_3:78772294-78772313 None:intergenic 55.0%
GTTCTCCCGGGTTCAAATCC+CGG + chr3_3:78772294-78772313 Msa0475530:intron 55.0%
GCGCTCCACCTCTGAGTATT+TGG - chr3_3:78772495-78772514 None:intergenic 55.0%
AAAGACGGCAGTGCCAATCC+TGG + chr3_3:78772525-78772544 Msa0475530:CDS 55.0%
GGCAGTATACTGTGCGTTGG+TGG - chr3_3:78772571-78772590 None:intergenic 55.0%
CTAACTACCGACCGAGTCTC+AGG + chr3_3:78772793-78772812 Msa0475530:intron 55.0%
GAGACTTGCGCCGTATTACG+AGG - chr3_3:78773496-78773515 None:intergenic 55.0%
! GGCCAGTTTGGGTTTCGTAG+GGG - chr3_3:78773572-78773591 None:intergenic 55.0%
! GAGGCCAGTTTGGGTTTCGT+AGG - chr3_3:78773574-78773593 None:intergenic 55.0%
GTGGCACATACTGTTCCTGC+TGG + chr3_3:78773730-78773749 Msa0475530:CDS 55.0%
CGGTTTGCCTTCTGACCCAA+AGG + chr3_3:78774074-78774093 Msa0475530:CDS 55.0%
! TGGTTTGCCTTCGGACCCAA+AGG + chr3_3:78774896-78774915 Msa0475530:CDS 55.0%
GGATGAACCTTTGGGTCCGA+AGG - chr3_3:78774906-78774925 None:intergenic 55.0%
GGAAGGCAAACCAGCGGAAA+TGG - chr3_3:78775114-78775133 None:intergenic 55.0%
! TGGTTTGCCTTCCGACCCAA+AGG + chr3_3:78775121-78775140 Msa0475530:CDS 55.0%
TTGGTCAGAAGGCAAACCCG+TGG - chr3_3:78775345-78775364 None:intergenic 55.0%
!! CCACTCTCAGTGGCCTTGTT+GGG - chr3_3:78775739-78775758 None:intergenic 55.0%
!! TCCACTCTCAGTGGCCTTGT+TGG - chr3_3:78775740-78775759 None:intergenic 55.0%
GGGAGAACTGGGTGATACCC+AGG - chr3_3:78772282-78772301 None:intergenic 60.0%
GGGTATCACCCAGTTCTCCC+GGG + chr3_3:78772282-78772301 Msa0475530:intron 60.0%
CGTTGCCGGGATTTGAACCC+GGG - chr3_3:78772302-78772321 None:intergenic 60.0%
CCGTTGCCGGGATTTGAACC+CGG - chr3_3:78772303-78772322 None:intergenic 60.0%
CCGGGTTCAAATCCCGGCAA+CGG + chr3_3:78772300-78772319 Msa0475530:intron 60.0%
GTGGTCACAGTGGTCGTGGT+GGG - chr3_3:78772552-78772571 None:intergenic 60.0%
!! GTTGGTGGTCACAGTGGTCG+TGG - chr3_3:78772556-78772575 None:intergenic 60.0%
!! CTGTGCGTTGGTGGTCACAG+TGG - chr3_3:78772562-78772581 None:intergenic 60.0%
GCTCCTGGAGTGACTGATCC+TGG + chr3_3:78772654-78772673 Msa0475530:CDS 60.0%
CATTGCCGTCACCATCCTGC+AGG + chr3_3:78773029-78773048 Msa0475530:intron 60.0%
TGTTGAGCCGGACGTTGAGG+TGG - chr3_3:78773538-78773557 None:intergenic 60.0%
! GCTTGTTGAGCCGGACGTTG+AGG - chr3_3:78773541-78773560 None:intergenic 60.0%
CGTCCGGCTCAACAAGCTTG+TGG + chr3_3:78773544-78773563 Msa0475530:CDS 60.0%
TGGGTCGGAAGGCAAACCAG+CGG - chr3_3:78775120-78775139 None:intergenic 60.0%
CCTCGCTCTTCACACCCTAC+AGG - chr3_3:78775691-78775710 None:intergenic 60.0%
CCTGTAGGGTGTGAAGAGCG+AGG + chr3_3:78775688-78775707 Msa0475530:CDS 60.0%
CCCAACAAGGCCACTGAGAG+TGG + chr3_3:78775736-78775755 Msa0475530:CDS 60.0%
!! GGTCGTGGTGGGTCCAGGAT+TGG - chr3_3:78772541-78772560 None:intergenic 65.0%
!! ACAGTGGTCGTGGTGGGTCC+AGG - chr3_3:78772546-78772565 None:intergenic 65.0%
GGTGGTCACAGTGGTCGTGG+TGG - chr3_3:78772553-78772572 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78771535 78776086 78771535 ID=Msa0475530;Name=Msa0475530
chr3_3 mRNA 78771535 78776086 78771535 ID=Msa0475530-mRNA-1;Parent=Msa0475530;Name=Msa0475530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=65|1|0.75|1|1|1|4|180|942
chr3_3 exon 78771535 78771920 78771535 ID=Msa0475530-mRNA-1:exon:21252;Parent=Msa0475530-mRNA-1
chr3_3 exon 78772504 78772675 78772504 ID=Msa0475530-mRNA-1:exon:21253;Parent=Msa0475530-mRNA-1
chr3_3 exon 78773458 78775367 78773458 ID=Msa0475530-mRNA-1:exon:21254;Parent=Msa0475530-mRNA-1
chr3_3 exon 78775481 78776086 78775481 ID=Msa0475530-mRNA-1:exon:21255;Parent=Msa0475530-mRNA-1
chr3_3 five_prime_UTR 78771535 78771599 78771535 ID=Msa0475530-mRNA-1:five_prime_utr;Parent=Msa0475530-mRNA-1
chr3_3 CDS 78771600 78771920 78771600 ID=Msa0475530-mRNA-1:cds;Parent=Msa0475530-mRNA-1
chr3_3 CDS 78772504 78772675 78772504 ID=Msa0475530-mRNA-1:cds;Parent=Msa0475530-mRNA-1
chr3_3 CDS 78773458 78775367 78773458 ID=Msa0475530-mRNA-1:cds;Parent=Msa0475530-mRNA-1
chr3_3 CDS 78775481 78775906 78775481 ID=Msa0475530-mRNA-1:cds;Parent=Msa0475530-mRNA-1
chr3_3 three_prime_UTR 78775907 78776086 78775907 ID=Msa0475530-mRNA-1:three_prime_utr;Parent=Msa0475530-mRNA-1
Gene Sequence

>Msa0475530

ATGACTGTAAATTTTCCCGTTTGCCATTCATCACGAACTTCAAAGATTTCGCAGCCCTCTATCTTGATGGATCAGTCAAGCATTATGTTTCCAGTTACTGTCCCGAGACAGACACTGCCAACTGTATCATCAACCGATGCTTTAGAAACCAAGGTAACAATTGGTGGTACCGCAGCTTCCAAAAGGAAAAGAAAAGCATGGTCAGAGGAAGAGGACAATTTGCTACGGGATGCTGTTCAGAAATGGGGTGAAGGGAATTGGGCTACCATGGCAAAAGGAGACAGCTTTCCTATTAAGAGAAGTGCAACACAATTGTCTCAGAGGTGGAGCGCTTTAAGAAAGAAAGACGGCAGTGCCAATCCTGGACCCACCACGACCACTGTGACCACCAACGCACAGTATACTGCCGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCCCTTGACATGCCATTCAAAAAGTTAGCTGCTCCTGGAGTGACTGATCCTGGTAGGACATCCACATCAATAAAAAATCAAGTGCAGCCTCGTAATACGGCGCAAGTCTCCACAATTCATAGTTCTGTACCACCTCAACGTCCGGCTCAACAAGCTTGTGGTTCCCCTACGAAACCCAAACTGGCCTCTGAAAATTCAGTCTCAAAGTGTAATGCAATGTCAGCTCGTGAGTCAAAACCTGCCATTGTTCATTCTGGAGCACAAACACAAACTGTTTCGCGAACAAATGCTGCGCCACAATTGATGGTTTCGCAAGCAAAAAATGTGGCACATACTGTTCCTGCTGGCAGTACTTTGACAAAGACACCCATTTCTTCTGGTTTGCACCAAAAGATTCGTTCAAATGTGCCTGCTGGTAGTTCTTTGACAAAGACACCCATTTCTACTGGTTTGGCTCCTGTTCAGCCAAATGTAAATGTGCCTGACGGTAGGTCTTTATCAAGGACACCCATTTCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTGCATGTTGGTAGTTCTTTGACGAAGACACCCATTTCTGCTGGCATGCCTTCTAACCAAAAGGTTTATTCAAATGTGCCTGCCGCTAGTTCTTTGACGAAGACACCCAATTCTGCCGGTTTGCCTTCTGACCCAAAGGTTTGTTCAAATGTAGCTGCCGGTAATTCTTTGCCAAAGACACCCATTTCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTACTTGCCGGTAGTTCTTTGACAAAGACACCCATTTCTGCTGGTTTGCCTTCTAACCCAAAGGTTCATTCAAATGTGTCTACTGGTAGTTCTTTGACAAAGCCACCCATTTCTGTTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTGCCTACTGGTAATTCTTTGACAAAGACACCCATTTCTTCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTGTCTGCCGGTAATTCTTTGACGAAGACACCCATTTCTGCTGGTTTGCCTTCCAACCAAAAGGTTCATTTAAATGTGTCTGCCGGTAATTCTTTGACGAAGACACCCATTACTGCTGGTTTGCCTTCTAATCAAAAGGCTCATTCAAACGTGCATGCCGGAAGTTCTTTGACGAAGACGCCCATTTCTGTTGGTTTGCCTTCTAACCAAAAGGCTCATTCAAACGTGTCTGCCGGCAGTTCTTTGACGAAGACGCCCATTTCTGTTGGTTTGCCTTCTGACAAAAAGGTTTTAAATGTGCATGCTGCTAGTTCTCTGACAAAGACACCCATTTCTGCTAGTTTGCCTTCTAACCAAAAGGTCCATTCAAATGTACCTGTCGGTAGTTCTTTGACGAAGACACCCATTTCTTCTGGTTTGTCTTCTGACAAGAAGGTTCATTCAAATGTACCTGTTGCTAGTTCTCTGACAAAGACACCCATTTATGCTGGTTTGCCTTCGGACCCAAAGGTTCATCCAAATGTGCCTGCTGGTAATTCTTTGACAAAGACACCCATTTCGGCTGGTTTGCCTTCTGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTGTGACAAAGACACCCATTTCGGCTGCTTTGCCTTCTGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATACTTTGACAAAGACACCCATTTCCGCTGGTTTGCCTTCCGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACAAAGACACCCATTTCCGCTGGTTTTCCTTCAGACCCAAAAGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACTAAGACACCCATTTCTGGTTGTCTGCCTTCTGACCCAATGGTTCATTCAAACGTGCCTGCTGGCAATTCTTTGACAAAGACACCCATTTCCACGGGTTTGCCTTCTGACCAAAAGGATAAACATGTTACCTCTGTGAAAGAAGTGGAAAAAAGACTCGCTGAGCCTGGCTCCACACCAAAAGAGAATGTGAAAGAGGAAGCTTCTACATCTACTACTGAGGGCCAGGTAAATAGCAAACTGGATAAGGCGAGGCTAGATTTAGATAAAGCTAAAAGCATGCCCACTGAGAAAGTTTTGGAACACAAAGCAATGCCTCAAAATCCTGTAGGGTGTGAAGAGCGAGGAAGTGTCAAGAGTTCAAATTTTACTCCCAACAAGGCCACTGAGAGTGGAAATGACAATTTGAATAAGGAAAGTCAAAATCTAAACCAAGACAAGACAAGTTCTGTTAATGAAAACTCTCAGCATCAGAACGCGAAAGAGAAACTCGTAAATTTGCCAAAACAAGATGAATGCCGTCAAGGTTTGGAAGTGCCGTGA
Protein sequence

>Msa0475530

MTVNFPVCHSSRTSKISQPSILMDQSSIMFPVTVPRQTLPTVSSTDALETKVTIGGTAASKRKRKAWSEEEDNLLRDAVQKWGEGNWATMAKGDSFPIKRSATQLSQRWSALRKKDGSANPGPTTTTVTTNAQYTAEQLATRHSLNLALDMPFKKLAAPGVTDPGRTSTSIKNQVQPRNTAQVSTIHSSVPPQRPAQQACGSPTKPKLASENSVSKCNAMSARESKPAIVHSGAQTQTVSRTNAAPQLMVSQAKNVAHTVPAGSTLTKTPISSGLHQKIRSNVPAGSSLTKTPISTGLAPVQPNVNVPDGRSLSRTPISAGLPSNQKVHSNVHVGSSLTKTPISAGMPSNQKVYSNVPAASSLTKTPNSAGLPSDPKVCSNVAAGNSLPKTPISAGLPSNQKVHSNVLAGSSLTKTPISAGLPSNPKVHSNVSTGSSLTKPPISVGLPSNQKVHSNVPTGNSLTKTPISSGLPSNQKVHSNVSAGNSLTKTPISAGLPSNQKVHLNVSAGNSLTKTPITAGLPSNQKAHSNVHAGSSLTKTPISVGLPSNQKAHSNVSAGSSLTKTPISVGLPSDKKVLNVHAASSLTKTPISASLPSNQKVHSNVPVGSSLTKTPISSGLSSDKKVHSNVPVASSLTKTPIYAGLPSDPKVHPNVPAGNSLTKTPISAGLPSDPKVHSNVPAGNSVTKTPISAALPSDPKVHSNVPAGNTLTKTPISAGLPSDPKVHSNVPAGNSLTKTPISAGFPSDPKVHSNVPAGNSLTKTPISGCLPSDPMVHSNVPAGNSLTKTPISTGLPSDQKDKHVTSVKEVEKRLAEPGSTPKENVKEEASTSTTEGQVNSKLDKARLDLDKAKSMPTEKVLEHKAMPQNPVGCEERGSVKSSNFTPNKATESGNDNLNKESQNLNQDKTSSVNENSQHQNAKEKLVNLPKQDECRQGLEVP*