AlfalfaGEDB | Msa0476040

M. sativa cultivar zhongmu-4 / Msa0476040

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476040	KEH35772.1	94.872	195	9	1	1	194	1	195	1.45e-119	347

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476040	sp\|Q6H805\|ORR24_ORYSJ	55.000	240	54	2	6	191	23	262	2.87e-77	245

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476040	A0A072V1R9	94.872	195	9	1	1	194	1	195	6.93e-120	347

TFs/TRs:

Gene ID	Type	Classification
Msa0476040	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476040	MtrunA17_Chr3g0134461	94.872	195	9	1	1	194	1	195	1.33e-123	347
Msa0476040	MtrunA17_Chr3g0134481	71.649	194	45	1	1	194	1	184	1.57e-92	268
Msa0476040	MtrunA17_Chr1g0149841	52.720	239	61	2	5	191	2	240	6.07e-76	236
Msa0476040	MtrunA17_Chr7g0275401	47.917	240	72	1	5	191	2	241	8.08e-70	214
Msa0476040	MtrunA17_Chr4g0067981	49.791	239	70	2	3	191	26	264	5.79e-69	222
Msa0476040	MtrunA17_Chr7g0275891	47.222	252	68	4	5	191	2	253	3.40e-68	211
Msa0476040	MtrunA17_Chr2g0294911	47.234	235	76	2	5	191	26	260	1.88e-65	211
Msa0476040	MtrunA17_Chr1g0149851	46.457	254	69	3	5	191	2	255	7.10e-65	208
Msa0476040	MtrunA17_Chr3g0137101	73.881	134	35	0	1	134	1	134	4.43e-63	206
Msa0476040	MtrunA17_Chr3g0137101	83.051	59	10	0	133	191	189	247	1.61e-25	102
Msa0476040	MtrunA17_Chr1g0161431	46.091	243	76	2	4	191	7	249	1.60e-62	204
Msa0476040	MtrunA17_Chr4g0074411	45.188	239	82	1	2	191	12	250	4.26e-61	200
Msa0476040	MtrunA17_Chr4g0074401	45.763	236	76	1	8	191	17	252	8.53e-60	196
Msa0476040	MtrunA17_Chr3g0123131	43.644	236	81	2	8	191	13	248	3.16e-58	191
Msa0476040	MtrunA17_Chr8g0376881	44.492	236	81	2	6	191	23	258	3.71e-56	185
Msa0476040	MtrunA17_Chr2g0304841	62.595	131	49	0	2	132	12	142	3.07e-50	172
Msa0476040	MtrunA17_Chr2g0304841	70.370	54	16	0	138	191	209	262	6.72e-18	80.9
Msa0476040	MtrunA17_Chr4g0009851	41.121	214	100	3	3	191	6	218	1.40e-49	163
Msa0476040	MtrunA17_Chr4g0074421	45.604	182	52	1	58	192	2	183	1.94e-46	151
Msa0476040	MtrunA17_Chr1g0149831	46.893	177	39	3	67	191	1	174	7.71e-43	143
Msa0476040	MtrunA17_Chr4g0009901	36.842	209	106	3	8	191	10	217	5.13e-40	137
Msa0476040	MtrunA17_Chr6g0471041	33.962	212	114	3	7	193	13	223	6.71e-32	119
Msa0476040	MtrunA17_Chr4g0009981	36.585	164	79	2	53	191	2	165	4.14e-31	114
Msa0476040	MtrunA17_Chr8g0391911	30.672	238	111	6	8	193	9	244	5.67e-27	103
Msa0476040	MtrunA17_Chr8g0383961	36.486	148	91	2	1	145	7	154	4.64e-22	90.1
Msa0476040	MtrunA17_Chr6g0456631	34.375	128	81	2	5	130	6	132	2.13e-21	86.3
Msa0476040	MtrunA17_Chr4g0011071	32.374	139	69	2	55	168	36	174	9.45e-21	84.7
Msa0476040	MtrunA17_Chr4g0009991	37.815	119	50	2	100	194	1	119	1.22e-19	80.5
Msa0476040	MtrunA17_Chr5g0400241	38.400	125	71	3	8	130	14	134	3.87e-19	84.3
Msa0476040	MtrunA17_Chr5g0400241	54.386	57	26	0	135	191	304	360	6.60e-13	66.2
Msa0476040	MtrunA17_Chr3g0127941	30.539	167	108	3	12	171	56	221	1.36e-18	82.8
Msa0476040	MtrunA17_Chr8g0345901	35.833	120	74	1	14	130	38	157	2.76e-18	82.0
Msa0476040	MtrunA17_Chr7g0276361	31.788	151	97	3	1	145	1	151	2.82e-18	82.0
Msa0476040	MtrunA17_Chr1g0181811	30.986	142	95	1	12	150	85	226	3.17e-17	79.0
Msa0476040	MtrunA17_Chr4g0054981	32.520	123	81	1	8	130	14	134	8.33e-17	77.8
Msa0476040	MtrunA17_Chr4g0054981	53.030	66	28	2	127	191	296	359	9.81e-13	65.9
Msa0476040	MtrunA17_Chr3g0091641	31.452	124	82	1	12	132	24	147	1.17e-16	77.4
Msa0476040	MtrunA17_Chr4g0030271	34.426	122	77	2	12	130	89	210	2.39e-16	76.6
Msa0476040	MtrunA17_Chr4g0061021	30.645	124	83	1	12	132	33	156	2.99e-16	76.3
Msa0476040	MtrunA17_Chr6g0473731	33.051	118	48	1	105	191	27	144	7.98e-16	74.7
Msa0476040	MtrunA17_Chr5g0423031	37.037	81	50	1	8	88	10	89	8.95e-15	69.3
Msa0476040	MtrunA17_Chr8g0350761	31.933	119	80	1	11	128	20	138	1.72e-12	65.1
Msa0476040	MtrunA17_Chr4g0010001	35.802	81	51	1	8	88	10	89	1.89e-12	60.8
Msa0476040	MtrunA17_Chr4g0040481	49.057	53	27	0	139	191	155	207	7.56e-12	63.2
Msa0476040	MtrunA17_Chr2g0324891	49.057	53	27	0	139	191	158	210	1.60e-11	62.4
Msa0476040	MtrunA17_Chr4g0031961	54.902	51	23	0	141	191	130	180	1.67e-11	62.0
Msa0476040	MtrunA17_Chr7g0255711	52.941	51	24	0	141	191	90	140	4.87e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476040	AT2G25180.1	52.321	237	65	2	3	191	8	244	1.51e-75	238
Msa0476040	AT4G31920.1	53.153	222	68	1	6	191	11	232	1.76e-75	236
Msa0476040	AT5G58080.1	45.570	237	81	2	2	191	8	243	4.22e-60	198
Msa0476040	AT1G67710.1	46.186	236	74	3	9	191	8	243	1.34e-58	192
Msa0476040	AT2G01760.1	40.650	246	87	3	5	191	4	249	1.55e-52	172
Msa0476040	AT2G01760.2	36.496	274	87	4	5	191	4	277	2.09e-46	157
Msa0476040	AT3G16857.1	53.103	145	56	1	8	152	33	165	3.66e-44	155
Msa0476040	AT3G16857.1	57.692	78	23	1	124	191	209	286	2.93e-20	88.2
Msa0476040	AT3G16857.2	53.103	145	56	1	8	152	33	165	4.46e-44	155
Msa0476040	AT3G16857.2	57.692	78	23	1	124	191	209	286	2.76e-20	88.2
Msa0476040	AT5G49240.1	32.365	241	112	2	5	194	35	275	2.20e-37	131
Msa0476040	AT1G67710.2	43.820	178	47	3	67	191	1	178	5.49e-35	128
Msa0476040	AT3G62670.1	34.599	237	106	5	2	191	31	265	1.50e-33	124
Msa0476040	AT3G16857.3	53.774	106	37	1	47	152	2	95	2.12e-31	120
Msa0476040	AT3G16857.3	57.692	78	23	1	124	191	139	216	2.95e-20	88.2
Msa0476040	AT1G49190.1	31.667	240	109	5	7	191	29	268	4.15e-31	117
Msa0476040	AT1G49190.2	39.200	125	76	0	7	131	29	153	4.70e-25	102
Msa0476040	AT1G67710.3	39.873	158	42	3	87	191	12	169	7.12e-24	97.8
Msa0476040	AT2G01760.3	33.152	184	64	5	67	191	1	184	1.97e-21	89.7
Msa0476040	AT2G46790.3	34.074	135	86	1	12	143	37	171	1.26e-19	85.9
Msa0476040	AT2G46790.1	34.074	135	86	1	12	143	37	171	1.36e-19	85.9
Msa0476040	AT5G24470.1	33.600	125	80	1	10	131	48	172	4.02e-19	84.7
Msa0476040	AT5G61380.1	33.065	124	80	1	12	132	19	142	1.12e-18	83.6
Msa0476040	AT5G02810.1	35.246	122	76	1	12	130	78	199	1.99e-16	77.0
Msa0476040	AT5G60100.7	33.858	127	80	2	8	130	59	185	2.48e-16	76.6
Msa0476040	AT5G60100.6	33.858	127	80	2	8	130	59	185	2.48e-16	76.6
Msa0476040	AT5G60100.4	33.858	127	80	2	8	130	59	185	2.48e-16	76.6
Msa0476040	AT5G60100.2	34.426	122	77	1	12	130	64	185	2.82e-16	76.6
Msa0476040	AT5G60100.5	34.426	122	77	1	12	130	64	185	5.93e-16	75.5
Msa0476040	AT5G60100.3	34.426	122	77	1	12	130	64	185	5.93e-16	75.5
Msa0476040	AT5G60100.1	34.426	122	77	1	12	130	64	185	5.93e-16	75.5
Msa0476040	AT4G18020.8	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.8	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.11	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.11	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.4	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.4	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.5	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.5	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.10	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.10	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.7	34.091	132	78	3	6	130	12	141	4.61e-15	73.2
Msa0476040	AT4G18020.7	48.485	66	32	1	128	191	280	345	1.24e-11	63.2
Msa0476040	AT4G18020.3	34.091	132	78	3	6	130	12	141	4.92e-15	73.2
Msa0476040	AT4G18020.3	48.485	66	32	1	128	191	280	345	1.44e-11	62.8
Msa0476040	AT4G18020.2	34.091	132	78	3	6	130	12	141	4.92e-15	73.2
Msa0476040	AT4G18020.2	48.485	66	32	1	128	191	280	345	1.44e-11	62.8
Msa0476040	AT4G18020.1	34.091	132	78	3	6	130	12	141	4.92e-15	73.2
Msa0476040	AT4G18020.1	48.485	66	32	1	128	191	280	345	1.44e-11	62.8
Msa0476040	AT4G18020.6	34.091	132	78	3	6	130	12	141	4.92e-15	73.2
Msa0476040	AT4G18020.6	48.485	66	32	1	128	191	280	345	1.44e-11	62.8
Msa0476040	AT4G18020.9	34.091	132	78	3	6	130	12	141	4.92e-15	73.2
Msa0476040	AT4G18020.9	48.485	66	32	1	128	191	280	345	1.44e-11	62.8
Msa0476040	AT5G44190.2	59.615	52	21	0	140	191	145	196	1.20e-13	68.6
Msa0476040	AT5G44190.1	59.615	52	21	0	140	191	145	196	1.46e-13	68.6
Msa0476040	AT5G07210.2	29.012	162	95	4	12	172	16	158	3.09e-13	67.8
Msa0476040	AT3G46640.3	54.237	59	25	1	135	191	135	193	2.43e-12	64.7
Msa0476040	AT3G46640.2	54.237	59	25	1	135	191	135	193	2.54e-12	64.7
Msa0476040	AT3G46640.1	54.237	59	25	1	135	191	135	193	2.54e-12	64.7
Msa0476040	AT5G59570.2	52.542	59	26	1	135	191	132	190	6.33e-12	63.5
Msa0476040	AT5G59570.1	52.542	59	26	1	135	191	132	190	6.33e-12	63.5
Msa0476040	AT2G40970.1	54.902	51	23	0	141	191	104	154	6.96e-12	62.8
Msa0476040	AT2G20570.1	54.717	53	24	0	139	191	150	202	9.44e-12	63.2
Msa0476040	AT2G20570.2	62.222	45	17	0	147	191	174	218	1.62e-11	62.8
Msa0476040	AT5G05090.1	52.941	51	24	0	141	191	80	130	3.89e-11	60.8
Msa0476040	AT3G10760.1	52.941	51	24	0	141	191	104	154	5.76e-11	60.8

Find 77 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGGTGCCTCTGAATTTC+TGG	0.024455	3_3:+79759829	Msa0476040:CDS
TTTCTTTCACTGAATGTTTC+TGG	0.116372	3_3:+79760397	Msa0476040:three_prime_UTR
ACCAATCATAATTTGCTCTT+TGG	0.298362	3_3:-79760730	None:intergenic
TTGCTCTTTGGCGGAATAGA+AGG	0.330157	3_3:-79760718	None:intergenic
GCTGTACCCGAAAAGATTCT+TGG	0.366985	3_3:+79760277	Msa0476040:CDS
TAGTAGAGAAGAGAAAATTA+TGG	0.377587	3_3:+79758807	Msa0476040:exon
TAGAGCAGCTAAAGACCATT+TGG	0.387046	3_3:+79759867	Msa0476040:CDS
AGCCTCAAGGAGTGCAGATC+AGG	0.403817	3_3:+79760516	Msa0476040:three_prime_UTR
AATGTTTCTGGTTTATGAAA+TGG	0.414593	3_3:+79760409	Msa0476040:three_prime_UTR
GCCAAAGAGCAAATTATGAT+TGG	0.416480	3_3:+79760729	Msa0476040:three_prime_UTR
AGGACGTGGCAAGCCATCTC+CGG	0.418300	3_3:+79760329	Msa0476040:CDS
CCATTTGGCAGCATGTAATT+CGG	0.418909	3_3:+79759882	Msa0476040:CDS
AAACCAACACGCTAGTAGTT+TGG	0.419478	3_3:+79760489	Msa0476040:three_prime_UTR
AGAAGAAGTCCCAGTCTGTT+TGG	0.426238	3_3:+79759936	Msa0476040:CDS
CACGCATTCCGATGGGAAAC+CGG	0.429749	3_3:-79758843	None:intergenic
ACATTTACAGACCAAACAAC+CGG	0.435815	3_3:-79760607	None:intergenic
AATCATAATTTGCTCTTTGG+CGG	0.440127	3_3:-79760727	None:intergenic
GTTGCTGCTGTTAATCAGTT+AGG	0.449852	3_3:+79759983	Msa0476040:CDS
CCGAATTACATGCTGCCAAA+TGG	0.458584	3_3:-79759882	None:intergenic
AGCTTAAGTCCATCCATGTC+AGG	0.462326	3_3:-79759602	None:intergenic
TCCGATGGGAAACCGGTCAC+TGG	0.476693	3_3:-79758836	None:intergenic
TTTAGCTGCTCTAATCTCAC+AGG	0.481770	3_3:-79759857	None:intergenic
AAGAGCAAATTATGATTGGT+AGG	0.503759	3_3:+79760733	Msa0476040:three_prime_UTR
GGACGTGGCAAGCCATCTCC+GGG	0.509409	3_3:+79760330	Msa0476040:CDS
GGGGCTTCTTCTGAGCTCAT+GGG	0.512861	3_3:-79760585	None:intergenic
ACTAGAAAATTGCCCGGAGA+TGG	0.513115	3_3:-79760342	None:intergenic
GTCCCAGTCTGTTTGGTCTG+TGG	0.513687	3_3:+79759943	Msa0476040:CDS
CTATAATGAGCTAGTGATGA+AGG	0.515535	3_3:+79759799	Msa0476040:CDS
ATGCGTGTTCTCGCCGTCGA+CGG	0.517593	3_3:+79758859	Msa0476040:CDS
AAAGATGAGGATAAAGAGAA+TGG	0.519948	3_3:+79760547	Msa0476040:three_prime_UTR
GCTCCACAGACCAAACAGAC+TGG	0.522152	3_3:-79759946	None:intergenic
TTCTAAATCCGAGAGATAAG+TGG	0.525410	3_3:-79758887	None:intergenic
GGGACTTCTTCTGAGCTGAT+AGG	0.528115	3_3:-79759925	None:intergenic
TTAGATAAATTAAAGCGTAA+AGG	0.528607	3_3:-79760365	None:intergenic
GGTGCACATCAGCGATTACC+AGG	0.528972	3_3:-79759577	None:intergenic
CGGCGATTCCACTTATCTCT+CGG	0.532887	3_3:+79758879	Msa0476040:CDS
ACTTAAGCTGCTTGAACTTG+TGG	0.534364	3_3:+79759616	Msa0476040:CDS
GGCGAGAACACGCATTCCGA+TGG	0.535415	3_3:-79758851	None:intergenic
CTCCACAGACCAAACAGACT+GGG	0.537731	3_3:-79759945	None:intergenic
GTGCACCTGCCTGACATGGA+TGG	0.546404	3_3:+79759593	Msa0476040:CDS
AAATATTACAAGGGAGGACG+TGG	0.547028	3_3:+79760315	Msa0476040:CDS
TGAACTTACTTACGACCGGC+AGG	0.552218	3_3:-79759652	None:intergenic
AAAGTTAGCTCTGTGGGCTG+TGG	0.555004	3_3:+79760465	Msa0476040:three_prime_UTR
GTGAAGAAAGTTAGCTCTGT+GGG	0.556660	3_3:+79760459	Msa0476040:three_prime_UTR
CATTTACAGACCAAACAACC+GGG	0.558862	3_3:-79760606	None:intergenic
TTATGGATGACTCCAGTGAC+CGG	0.561206	3_3:+79758824	Msa0476040:exon
GCATGTAATTCGGAAGAAGA+AGG	0.566666	3_3:+79759892	Msa0476040:CDS
TGAACTTGTGGAACTTGAGA+CGG	0.569359	3_3:+79759628	Msa0476040:CDS
GAACTGAACTTACTTACGAC+CGG	0.571061	3_3:-79759656	None:intergenic
TGATGTGCACCTGCCTGACA+TGG	0.573968	3_3:+79759589	Msa0476040:CDS
TAAGTCCATCCATGTCAGGC+AGG	0.574028	3_3:-79759598	None:intergenic
CTCTTTGGCGGAATAGAAGG+AGG	0.575118	3_3:-79760715	None:intergenic
TCCAGTGACCGGTTTCCCAT+CGG	0.576158	3_3:+79758835	Msa0476040:CDS
GTAGTTTGGTGGCAGCCTCA+AGG	0.578073	3_3:+79760503	Msa0476040:three_prime_UTR
TGAATGTTGAAAATATTACA+AGG	0.578744	3_3:+79760305	Msa0476040:CDS
CCAACACGCTAGTAGTTTGG+TGG	0.581455	3_3:+79760492	Msa0476040:three_prime_UTR
ATCCTGATCTGCACTCCTTG+AGG	0.584552	3_3:-79760518	None:intergenic
GACCGTGGTATTGACATGAT+CGG	0.585397	3_3:-79758918	None:intergenic
ATGAGCTCAGAAGAAGCCCC+CGG	0.587881	3_3:+79760588	Msa0476040:three_prime_UTR
CCACCAAACTACTAGCGTGT+TGG	0.591206	3_3:-79760492	None:intergenic
CCAGAAATTCAGAGGCACCA+TGG	0.591294	3_3:-79759829	None:intergenic
ATAAGTGGAATCGCCGTCGA+CGG	0.593520	3_3:-79758872	None:intergenic
GGAACTTGAGACGGACCTGC+CGG	0.597204	3_3:+79759637	Msa0476040:CDS
AGGTTTCACCAGAAATTCAG+AGG	0.602943	3_3:-79759837	None:intergenic
TAAAGGACTAGAAAATTGCC+CGG	0.605859	3_3:-79760348	None:intergenic
GCGAGAACACGCATTCCGAT+GGG	0.617268	3_3:-79758850	None:intergenic
TCAGGATGAAGACAAAGATG+AGG	0.628542	3_3:+79760534	Msa0476040:three_prime_UTR
GAATGTTGAAAATATTACAA+GGG	0.643931	3_3:+79760306	Msa0476040:CDS
TAACAGCAGCAACAAACTTG+TGG	0.645143	3_3:-79759973	None:intergenic
TCGGAAGAAGAAGGACAATG+AGG	0.649373	3_3:+79759901	Msa0476040:CDS
TGTTGAAAATATTACAAGGG+AGG	0.651126	3_3:+79760309	Msa0476040:CDS
AAACAAAGACAAGTTTGACC+TGG	0.671629	3_3:+79759559	Msa0476040:CDS
CTCCGATCATGTCAATACCA+CGG	0.699650	3_3:+79758916	Msa0476040:CDS
TGTGAAGAAAGTTAGCTCTG+TGG	0.699756	3_3:+79760458	Msa0476040:three_prime_UTR
TTTACAGACCAAACAACCGG+GGG	0.705017	3_3:-79760604	None:intergenic
CGTGGTATTGACATGATCGG+AGG	0.711493	3_3:-79758915	None:intergenic
ATTTACAGACCAAACAACCG+GGG	0.719728	3_3:-79760605	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAATAAATCAAATAAAATT+GGG	-	chr3_3:79758964-79758983	None:intergenic	10.0%
!!	ATGAATAAATCAAATAAAAT+TGG	-	chr3_3:79758965-79758984	None:intergenic	10.0%
!!!	ATATTTATGTTATTTATGTA+TGG	+	chr3_3:79759477-79759496	Msa0476040:intron	10.0%
!!	AAAAAAATTTATAACAACAA+AGG	-	chr3_3:79759756-79759775	None:intergenic	10.0%
!!!	TTTTTTTTTTTTTTTATTGG+AGG	+	chr3_3:79760659-79760678	Msa0476040:three_prime_UTR	10.0%
!!	ATATTTAAAAAATTTAAGAG+GGG	+	chr3_3:79760814-79760833	Msa0476040:three_prime_UTR	10.0%
!!	TGAATAAATCAAATAAAATT+GGG	-	chr3_3:79758964-79758983	None:intergenic	10.0%
!!	ATGAATAAATCAAATAAAAT+TGG	-	chr3_3:79758965-79758984	None:intergenic	10.0%
!!!	ATATTTATGTTATTTATGTA+TGG	+	chr3_3:79759477-79759496	Msa0476040:intron	10.0%
!!	AAAAAAATTTATAACAACAA+AGG	-	chr3_3:79759756-79759775	None:intergenic	10.0%
!!!	TTTTTTTTTTTTTTTATTGG+AGG	+	chr3_3:79760659-79760678	Msa0476040:three_prime_UTR	10.0%
!!	ATATTTAAAAAATTTAAGAG+GGG	+	chr3_3:79760814-79760833	Msa0476040:three_prime_UTR	10.0%
!!!	TATGTTATTTATACACATTT+TGG	+	chr3_3:79759357-79759376	Msa0476040:intron	15.0%
!!	ATTATTAATCAATGATTGTT+TGG	+	chr3_3:79759726-79759745	Msa0476040:intron	15.0%
!!	GTAAAATGAGAAATAAAATT+CGG	-	chr3_3:79760082-79760101	None:intergenic	15.0%
!!!	TATGTTATTTATACACATTT+TGG	+	chr3_3:79759357-79759376	Msa0476040:intron	15.0%
!!	ATTATTAATCAATGATTGTT+TGG	+	chr3_3:79759726-79759745	Msa0476040:intron	15.0%
!!	GTAAAATGAGAAATAAAATT+CGG	-	chr3_3:79760082-79760101	None:intergenic	15.0%
!!	TGATCATAATTGATAAGTAA+AGG	+	chr3_3:79759018-79759037	Msa0476040:intron	20.0%
!!!	TAGATATGATTTTAGTTTGT+TGG	+	chr3_3:79759083-79759102	Msa0476040:intron	20.0%
!!!	TTATGTTATTTATGTATGGT+TGG	+	chr3_3:79759481-79759500	Msa0476040:intron	20.0%
!!!	TATGTTATTTATGTATGGTT+GGG	+	chr3_3:79759482-79759501	Msa0476040:intron	20.0%
!!	AATAAAAATTGTTTGTGTTG+CGG	-	chr3_3:79760035-79760054	None:intergenic	20.0%
!!!	TTTAATTTATTTTCAATCCG+AGG	+	chr3_3:79760117-79760136	Msa0476040:intron	20.0%
!!	TGAAAAAAACTTATGATGAT+AGG	+	chr3_3:79760141-79760160	Msa0476040:intron	20.0%
!!	TGAATGTTGAAAATATTACA+AGG	+	chr3_3:79760305-79760324	Msa0476040:CDS	20.0%
!!	GAATGTTGAAAATATTACAA+GGG	+	chr3_3:79760306-79760325	Msa0476040:CDS	20.0%
!!	TTAGATAAATTAAAGCGTAA+AGG	-	chr3_3:79760368-79760387	None:intergenic	20.0%
!!	TGATCATAATTGATAAGTAA+AGG	+	chr3_3:79759018-79759037	Msa0476040:intron	20.0%
!!!	TAGATATGATTTTAGTTTGT+TGG	+	chr3_3:79759083-79759102	Msa0476040:intron	20.0%
!!!	TTATGTTATTTATGTATGGT+TGG	+	chr3_3:79759481-79759500	Msa0476040:intron	20.0%
!!!	TATGTTATTTATGTATGGTT+GGG	+	chr3_3:79759482-79759501	Msa0476040:intron	20.0%
!!	AATAAAAATTGTTTGTGTTG+CGG	-	chr3_3:79760035-79760054	None:intergenic	20.0%
!!!	TTTAATTTATTTTCAATCCG+AGG	+	chr3_3:79760117-79760136	Msa0476040:intron	20.0%
!!	TGAAAAAAACTTATGATGAT+AGG	+	chr3_3:79760141-79760160	Msa0476040:intron	20.0%
!!	TGAATGTTGAAAATATTACA+AGG	+	chr3_3:79760305-79760324	Msa0476040:CDS	20.0%
!!	GAATGTTGAAAATATTACAA+GGG	+	chr3_3:79760306-79760325	Msa0476040:CDS	20.0%
!!	TTAGATAAATTAAAGCGTAA+AGG	-	chr3_3:79760368-79760387	None:intergenic	20.0%
!	TAGTAGAGAAGAGAAAATTA+TGG	+	chr3_3:79758807-79758826	Msa0476040:exon	25.0%
!	CATGCATTATACACATAAAT+TGG	-	chr3_3:79758997-79759016	None:intergenic	25.0%
!	TATGTATATGTAGAGAGATA+CGG	+	chr3_3:79759042-79759061	Msa0476040:intron	25.0%
!	CACATTTATAAACACTATAC+AGG	-	chr3_3:79759203-79759222	None:intergenic	25.0%
!	GAACTTACTTTGAATTCATT+TGG	+	chr3_3:79759251-79759270	Msa0476040:intron	25.0%
!	ATTGTTCCTATACTATAACA+AGG	-	chr3_3:79759430-79759449	None:intergenic	25.0%
!!	ATGTTATTTATGTATGGTTG+GGG	+	chr3_3:79759483-79759502	Msa0476040:intron	25.0%
!!!	TCATAAGTTTTTTTCAACCT+CGG	-	chr3_3:79760137-79760156	None:intergenic	25.0%
!	TCATGTTAATGTTGTATTAC+TGG	+	chr3_3:79760249-79760268	Msa0476040:intron	25.0%
!!!	AATGTTTCTGGTTTATGAAA+TGG	+	chr3_3:79760409-79760428	Msa0476040:three_prime_UTR	25.0%
!	TTTAAAAAATTTAAGAGGGG+AGG	+	chr3_3:79760817-79760836	Msa0476040:three_prime_UTR	25.0%
!	TAGTAGAGAAGAGAAAATTA+TGG	+	chr3_3:79758807-79758826	Msa0476040:exon	25.0%
!	CATGCATTATACACATAAAT+TGG	-	chr3_3:79758997-79759016	None:intergenic	25.0%
!	TATGTATATGTAGAGAGATA+CGG	+	chr3_3:79759042-79759061	Msa0476040:intron	25.0%
!	CACATTTATAAACACTATAC+AGG	-	chr3_3:79759203-79759222	None:intergenic	25.0%
!	GAACTTACTTTGAATTCATT+TGG	+	chr3_3:79759251-79759270	Msa0476040:intron	25.0%
!	ATTGTTCCTATACTATAACA+AGG	-	chr3_3:79759430-79759449	None:intergenic	25.0%
!!	ATGTTATTTATGTATGGTTG+GGG	+	chr3_3:79759483-79759502	Msa0476040:intron	25.0%
!!!	TCATAAGTTTTTTTCAACCT+CGG	-	chr3_3:79760137-79760156	None:intergenic	25.0%
!	TCATGTTAATGTTGTATTAC+TGG	+	chr3_3:79760249-79760268	Msa0476040:intron	25.0%
!!!	AATGTTTCTGGTTTATGAAA+TGG	+	chr3_3:79760409-79760428	Msa0476040:three_prime_UTR	25.0%
!	TTTAAAAAATTTAAGAGGGG+AGG	+	chr3_3:79760817-79760836	Msa0476040:three_prime_UTR	25.0%
	CTTTGAATTCATTTGGACTT+TGG	+	chr3_3:79759258-79759277	Msa0476040:intron	30.0%
!	CAAACTCCTTGTTATAGTAT+AGG	+	chr3_3:79759421-79759440	Msa0476040:intron	30.0%
	TAATGAAACACTTCATGACA+TGG	-	chr3_3:79760212-79760231	None:intergenic	30.0%
!	ATCAAACCAAGAATCTTTTC+GGG	-	chr3_3:79760286-79760305	None:intergenic	30.0%
!	CATCAAACCAAGAATCTTTT+CGG	-	chr3_3:79760287-79760306	None:intergenic	30.0%
	TGTTGAAAATATTACAAGGG+AGG	+	chr3_3:79760309-79760328	Msa0476040:CDS	30.0%
	TTTCTTTCACTGAATGTTTC+TGG	+	chr3_3:79760397-79760416	Msa0476040:three_prime_UTR	30.0%
	AAAGATGAGGATAAAGAGAA+TGG	+	chr3_3:79760547-79760566	Msa0476040:three_prime_UTR	30.0%
!!	AATCATAATTTGCTCTTTGG+CGG	-	chr3_3:79760730-79760749	None:intergenic	30.0%
!!	ACCAATCATAATTTGCTCTT+TGG	-	chr3_3:79760733-79760752	None:intergenic	30.0%
	AAGAGCAAATTATGATTGGT+AGG	+	chr3_3:79760733-79760752	Msa0476040:three_prime_UTR	30.0%
	CTTTGAATTCATTTGGACTT+TGG	+	chr3_3:79759258-79759277	Msa0476040:intron	30.0%
!	CAAACTCCTTGTTATAGTAT+AGG	+	chr3_3:79759421-79759440	Msa0476040:intron	30.0%
	TAATGAAACACTTCATGACA+TGG	-	chr3_3:79760212-79760231	None:intergenic	30.0%
!	ATCAAACCAAGAATCTTTTC+GGG	-	chr3_3:79760286-79760305	None:intergenic	30.0%
!	CATCAAACCAAGAATCTTTT+CGG	-	chr3_3:79760287-79760306	None:intergenic	30.0%
	TGTTGAAAATATTACAAGGG+AGG	+	chr3_3:79760309-79760328	Msa0476040:CDS	30.0%
	TTTCTTTCACTGAATGTTTC+TGG	+	chr3_3:79760397-79760416	Msa0476040:three_prime_UTR	30.0%
	AAAGATGAGGATAAAGAGAA+TGG	+	chr3_3:79760547-79760566	Msa0476040:three_prime_UTR	30.0%
!!	AATCATAATTTGCTCTTTGG+CGG	-	chr3_3:79760730-79760749	None:intergenic	30.0%
!!	ACCAATCATAATTTGCTCTT+TGG	-	chr3_3:79760733-79760752	None:intergenic	30.0%
	AAGAGCAAATTATGATTGGT+AGG	+	chr3_3:79760733-79760752	Msa0476040:three_prime_UTR	30.0%
	TTCTAAATCCGAGAGATAAG+TGG	-	chr3_3:79758890-79758909	None:intergenic	35.0%
!	GTTTGTTGGAAATTCTGCTT+CGG	+	chr3_3:79759097-79759116	Msa0476040:intron	35.0%
	TGCTGATAAAAAGTTTGACC+TGG	+	chr3_3:79759319-79759338	Msa0476040:intron	35.0%
	AACAAGGAGTTTGTGAAACT+AGG	-	chr3_3:79759414-79759433	None:intergenic	35.0%
	AACAGCTAGTGAAGCAAAAA+CGG	+	chr3_3:79759517-79759536	Msa0476040:CDS	35.0%
	AAACAAAGACAAGTTTGACC+TGG	+	chr3_3:79759559-79759578	Msa0476040:CDS	35.0%
	CTATAATGAGCTAGTGATGA+AGG	+	chr3_3:79759799-79759818	Msa0476040:CDS	35.0%
	GAAATAAAATTCGGTCAAGC+TGG	-	chr3_3:79760073-79760092	None:intergenic	35.0%
!	TTATGATGATAGGTGCTACA+TGG	+	chr3_3:79760151-79760170	Msa0476040:intron	35.0%
	TAATGTTGTATTACTGGCAG+AGG	+	chr3_3:79760255-79760274	Msa0476040:intron	35.0%
	TAAAGGACTAGAAAATTGCC+CGG	-	chr3_3:79760351-79760370	None:intergenic	35.0%
	ACATTTACAGACCAAACAAC+CGG	-	chr3_3:79760610-79760629	None:intergenic	35.0%
!!!	TTCATGACTTCCGTTTTTTC+TGG	+	chr3_3:79760687-79760706	Msa0476040:three_prime_UTR	35.0%
!	GGAGGTTTTTCCAGAAAAAA+CGG	-	chr3_3:79760700-79760719	None:intergenic	35.0%
	GCCAAAGAGCAAATTATGAT+TGG	+	chr3_3:79760729-79760748	Msa0476040:three_prime_UTR	35.0%
	TTCTAAATCCGAGAGATAAG+TGG	-	chr3_3:79758890-79758909	None:intergenic	35.0%
!	GTTTGTTGGAAATTCTGCTT+CGG	+	chr3_3:79759097-79759116	Msa0476040:intron	35.0%
	TGCTGATAAAAAGTTTGACC+TGG	+	chr3_3:79759319-79759338	Msa0476040:intron	35.0%
	AACAAGGAGTTTGTGAAACT+AGG	-	chr3_3:79759414-79759433	None:intergenic	35.0%
	AACAGCTAGTGAAGCAAAAA+CGG	+	chr3_3:79759517-79759536	Msa0476040:CDS	35.0%
	AAACAAAGACAAGTTTGACC+TGG	+	chr3_3:79759559-79759578	Msa0476040:CDS	35.0%
	CTATAATGAGCTAGTGATGA+AGG	+	chr3_3:79759799-79759818	Msa0476040:CDS	35.0%
	GAAATAAAATTCGGTCAAGC+TGG	-	chr3_3:79760073-79760092	None:intergenic	35.0%
!	TTATGATGATAGGTGCTACA+TGG	+	chr3_3:79760151-79760170	Msa0476040:intron	35.0%
	TAATGTTGTATTACTGGCAG+AGG	+	chr3_3:79760255-79760274	Msa0476040:intron	35.0%
	TAAAGGACTAGAAAATTGCC+CGG	-	chr3_3:79760351-79760370	None:intergenic	35.0%
	ACATTTACAGACCAAACAAC+CGG	-	chr3_3:79760610-79760629	None:intergenic	35.0%
!!!	TTCATGACTTCCGTTTTTTC+TGG	+	chr3_3:79760687-79760706	Msa0476040:three_prime_UTR	35.0%
!	GGAGGTTTTTCCAGAAAAAA+CGG	-	chr3_3:79760700-79760719	None:intergenic	35.0%
	GCCAAAGAGCAAATTATGAT+TGG	+	chr3_3:79760729-79760748	Msa0476040:three_prime_UTR	35.0%
	AAAAGAAAAGAAGCAGACCG+TGG	-	chr3_3:79758936-79758955	None:intergenic	40.0%
	AATTAACCACCTCAAAGCCA+AGG	-	chr3_3:79759157-79759176	None:intergenic	40.0%
	CAGGTCATATCTAAGCAATG+TGG	-	chr3_3:79759184-79759203	None:intergenic	40.0%
	ATACCATAACAGCGATTACC+AGG	-	chr3_3:79759340-79759359	None:intergenic	40.0%
	GATCAAAGACTCCTAAGTCA+TGG	+	chr3_3:79759379-79759398	Msa0476040:intron	40.0%
	GGTCAAACATACCATGACTT+AGG	-	chr3_3:79759393-79759412	None:intergenic	40.0%
!!!	GTCTTTGTTTTCTCGCAACA+TGG	-	chr3_3:79759549-79759568	None:intergenic	40.0%
	ACTTAAGCTGCTTGAACTTG+TGG	+	chr3_3:79759616-79759635	Msa0476040:CDS	40.0%
	TGAACTTGTGGAACTTGAGA+CGG	+	chr3_3:79759628-79759647	Msa0476040:CDS	40.0%
	GAACTGAACTTACTTACGAC+CGG	-	chr3_3:79759659-79759678	None:intergenic	40.0%
	AGGTTTCACCAGAAATTCAG+AGG	-	chr3_3:79759840-79759859	None:intergenic	40.0%
	TTTAGCTGCTCTAATCTCAC+AGG	-	chr3_3:79759860-79759879	None:intergenic	40.0%
	TAGAGCAGCTAAAGACCATT+TGG	+	chr3_3:79759867-79759886	Msa0476040:CDS	40.0%
	CCATTTGGCAGCATGTAATT+CGG	+	chr3_3:79759882-79759901	Msa0476040:CDS	40.0%
	GCATGTAATTCGGAAGAAGA+AGG	+	chr3_3:79759892-79759911	Msa0476040:CDS	40.0%
	TAACAGCAGCAACAAACTTG+TGG	-	chr3_3:79759976-79759995	None:intergenic	40.0%
	GTTGCTGCTGTTAATCAGTT+AGG	+	chr3_3:79759983-79760002	Msa0476040:CDS	40.0%
	TCAAGCTGGAGGAAATTGAT+AGG	-	chr3_3:79760059-79760078	None:intergenic	40.0%
	ATAAAATTCGGTCAAGCTGG+AGG	-	chr3_3:79760070-79760089	None:intergenic	40.0%
	AAATATTACAAGGGAGGACG+TGG	+	chr3_3:79760315-79760334	Msa0476040:CDS	40.0%
!!	TGTGAAGAAAGTTAGCTCTG+TGG	+	chr3_3:79760458-79760477	Msa0476040:three_prime_UTR	40.0%
!!	GTGAAGAAAGTTAGCTCTGT+GGG	+	chr3_3:79760459-79760478	Msa0476040:three_prime_UTR	40.0%
	AAACCAACACGCTAGTAGTT+TGG	+	chr3_3:79760489-79760508	Msa0476040:three_prime_UTR	40.0%
	TCAGGATGAAGACAAAGATG+AGG	+	chr3_3:79760534-79760553	Msa0476040:three_prime_UTR	40.0%
	ATTTACAGACCAAACAACCG+GGG	-	chr3_3:79760608-79760627	None:intergenic	40.0%
	CATTTACAGACCAAACAACC+GGG	-	chr3_3:79760609-79760628	None:intergenic	40.0%
!!	GTAGGTTTTAATCTGCGATG+CGG	+	chr3_3:79760751-79760770	Msa0476040:three_prime_UTR	40.0%
	AAAAGAAAAGAAGCAGACCG+TGG	-	chr3_3:79758936-79758955	None:intergenic	40.0%
	AATTAACCACCTCAAAGCCA+AGG	-	chr3_3:79759157-79759176	None:intergenic	40.0%
	CAGGTCATATCTAAGCAATG+TGG	-	chr3_3:79759184-79759203	None:intergenic	40.0%
	ATACCATAACAGCGATTACC+AGG	-	chr3_3:79759340-79759359	None:intergenic	40.0%
	GATCAAAGACTCCTAAGTCA+TGG	+	chr3_3:79759379-79759398	Msa0476040:intron	40.0%
	GGTCAAACATACCATGACTT+AGG	-	chr3_3:79759393-79759412	None:intergenic	40.0%
!!!	GTCTTTGTTTTCTCGCAACA+TGG	-	chr3_3:79759549-79759568	None:intergenic	40.0%
	ACTTAAGCTGCTTGAACTTG+TGG	+	chr3_3:79759616-79759635	Msa0476040:CDS	40.0%
	TGAACTTGTGGAACTTGAGA+CGG	+	chr3_3:79759628-79759647	Msa0476040:CDS	40.0%
	GAACTGAACTTACTTACGAC+CGG	-	chr3_3:79759659-79759678	None:intergenic	40.0%
	AGGTTTCACCAGAAATTCAG+AGG	-	chr3_3:79759840-79759859	None:intergenic	40.0%
	TTTAGCTGCTCTAATCTCAC+AGG	-	chr3_3:79759860-79759879	None:intergenic	40.0%
	TAGAGCAGCTAAAGACCATT+TGG	+	chr3_3:79759867-79759886	Msa0476040:CDS	40.0%
	CCATTTGGCAGCATGTAATT+CGG	+	chr3_3:79759882-79759901	Msa0476040:CDS	40.0%
	GCATGTAATTCGGAAGAAGA+AGG	+	chr3_3:79759892-79759911	Msa0476040:CDS	40.0%
	TAACAGCAGCAACAAACTTG+TGG	-	chr3_3:79759976-79759995	None:intergenic	40.0%
	GTTGCTGCTGTTAATCAGTT+AGG	+	chr3_3:79759983-79760002	Msa0476040:CDS	40.0%
	TCAAGCTGGAGGAAATTGAT+AGG	-	chr3_3:79760059-79760078	None:intergenic	40.0%
	ATAAAATTCGGTCAAGCTGG+AGG	-	chr3_3:79760070-79760089	None:intergenic	40.0%
	AAATATTACAAGGGAGGACG+TGG	+	chr3_3:79760315-79760334	Msa0476040:CDS	40.0%
!!	TGTGAAGAAAGTTAGCTCTG+TGG	+	chr3_3:79760458-79760477	Msa0476040:three_prime_UTR	40.0%
!!	GTGAAGAAAGTTAGCTCTGT+GGG	+	chr3_3:79760459-79760478	Msa0476040:three_prime_UTR	40.0%
	AAACCAACACGCTAGTAGTT+TGG	+	chr3_3:79760489-79760508	Msa0476040:three_prime_UTR	40.0%
	TCAGGATGAAGACAAAGATG+AGG	+	chr3_3:79760534-79760553	Msa0476040:three_prime_UTR	40.0%
	ATTTACAGACCAAACAACCG+GGG	-	chr3_3:79760608-79760627	None:intergenic	40.0%
	CATTTACAGACCAAACAACC+GGG	-	chr3_3:79760609-79760628	None:intergenic	40.0%
!!	GTAGGTTTTAATCTGCGATG+CGG	+	chr3_3:79760751-79760770	Msa0476040:three_prime_UTR	40.0%
	TTATGGATGACTCCAGTGAC+CGG	+	chr3_3:79758824-79758843	Msa0476040:exon	45.0%
	CTCCGATCATGTCAATACCA+CGG	+	chr3_3:79758916-79758935	Msa0476040:CDS	45.0%
!!	GACCGTGGTATTGACATGAT+CGG	-	chr3_3:79758921-79758940	None:intergenic	45.0%
	TGACCTGGTAATCGCTGTTA+TGG	+	chr3_3:79759334-79759353	Msa0476040:intron	45.0%
	AGCTTAAGTCCATCCATGTC+AGG	-	chr3_3:79759605-79759624	None:intergenic	45.0%
!	GTGATGAAGGCAGTTTTCCA+TGG	+	chr3_3:79759812-79759831	Msa0476040:CDS	45.0%
	CCGAATTACATGCTGCCAAA+TGG	-	chr3_3:79759885-79759904	None:intergenic	45.0%
	TCGGAAGAAGAAGGACAATG+AGG	+	chr3_3:79759901-79759920	Msa0476040:CDS	45.0%
	AGAAGAAGTCCCAGTCTGTT+TGG	+	chr3_3:79759936-79759955	Msa0476040:CDS	45.0%
	GCTGTACCCGAAAAGATTCT+TGG	+	chr3_3:79760277-79760296	Msa0476040:CDS	45.0%
	ACTAGAAAATTGCCCGGAGA+TGG	-	chr3_3:79760345-79760364	None:intergenic	45.0%
	TTTACAGACCAAACAACCGG+GGG	-	chr3_3:79760607-79760626	None:intergenic	45.0%
	TTGCTCTTTGGCGGAATAGA+AGG	-	chr3_3:79760721-79760740	None:intergenic	45.0%
	TTATGGATGACTCCAGTGAC+CGG	+	chr3_3:79758824-79758843	Msa0476040:exon	45.0%
	CTCCGATCATGTCAATACCA+CGG	+	chr3_3:79758916-79758935	Msa0476040:CDS	45.0%
!!	GACCGTGGTATTGACATGAT+CGG	-	chr3_3:79758921-79758940	None:intergenic	45.0%
	TGACCTGGTAATCGCTGTTA+TGG	+	chr3_3:79759334-79759353	Msa0476040:intron	45.0%
	AGCTTAAGTCCATCCATGTC+AGG	-	chr3_3:79759605-79759624	None:intergenic	45.0%
!	GTGATGAAGGCAGTTTTCCA+TGG	+	chr3_3:79759812-79759831	Msa0476040:CDS	45.0%
	CCGAATTACATGCTGCCAAA+TGG	-	chr3_3:79759885-79759904	None:intergenic	45.0%
	TCGGAAGAAGAAGGACAATG+AGG	+	chr3_3:79759901-79759920	Msa0476040:CDS	45.0%
	AGAAGAAGTCCCAGTCTGTT+TGG	+	chr3_3:79759936-79759955	Msa0476040:CDS	45.0%
	GCTGTACCCGAAAAGATTCT+TGG	+	chr3_3:79760277-79760296	Msa0476040:CDS	45.0%
	ACTAGAAAATTGCCCGGAGA+TGG	-	chr3_3:79760345-79760364	None:intergenic	45.0%
	TTTACAGACCAAACAACCGG+GGG	-	chr3_3:79760607-79760626	None:intergenic	45.0%
	TTGCTCTTTGGCGGAATAGA+AGG	-	chr3_3:79760721-79760740	None:intergenic	45.0%
!!!	AGTTTTTTTTTTTTTTTTAT+TGG	+	chr3_3:79760656-79760675	Msa0476040:three_prime_UTR	5.0%
!!!	TAAATTTTTTAAATATAACA+AGG	-	chr3_3:79760810-79760829	None:intergenic	5.0%
!!	TTATATTTAAAAAATTTAAG+AGG	+	chr3_3:79760812-79760831	Msa0476040:three_prime_UTR	5.0%
!!	TATATTTAAAAAATTTAAGA+GGG	+	chr3_3:79760813-79760832	Msa0476040:three_prime_UTR	5.0%
!!!	AGTTTTTTTTTTTTTTTTAT+TGG	+	chr3_3:79760656-79760675	Msa0476040:three_prime_UTR	5.0%
!!!	TAAATTTTTTAAATATAACA+AGG	-	chr3_3:79760810-79760829	None:intergenic	5.0%
!!	TTATATTTAAAAAATTTAAG+AGG	+	chr3_3:79760812-79760831	Msa0476040:three_prime_UTR	5.0%
!!	TATATTTAAAAAATTTAAGA+GGG	+	chr3_3:79760813-79760832	Msa0476040:three_prime_UTR	5.0%
	ATAAGTGGAATCGCCGTCGA+CGG	-	chr3_3:79758875-79758894	None:intergenic	50.0%
	CGGCGATTCCACTTATCTCT+CGG	+	chr3_3:79758879-79758898	Msa0476040:CDS	50.0%
!!	CGTGGTATTGACATGATCGG+AGG	-	chr3_3:79758918-79758937	None:intergenic	50.0%
	CAGCAAATGCCGCAATTAGG+CGG	-	chr3_3:79759134-79759153	None:intergenic	50.0%
	AGGCAGCAAATGCCGCAATT+AGG	-	chr3_3:79759137-79759156	None:intergenic	50.0%
!	AATTGCGGCATTTGCTGCCT+TGG	+	chr3_3:79759137-79759156	Msa0476040:intron	50.0%
!!	CATTTGCTGCCTTGGCTTTG+AGG	+	chr3_3:79759145-79759164	Msa0476040:intron	50.0%
	TAAGTCCATCCATGTCAGGC+AGG	-	chr3_3:79759601-79759620	None:intergenic	50.0%
	TGAACTTACTTACGACCGGC+AGG	-	chr3_3:79759655-79759674	None:intergenic	50.0%
!!	CCAGAAATTCAGAGGCACCA+TGG	-	chr3_3:79759832-79759851	None:intergenic	50.0%
	CCATGGTGCCTCTGAATTTC+TGG	+	chr3_3:79759829-79759848	Msa0476040:CDS	50.0%
	GGGACTTCTTCTGAGCTGAT+AGG	-	chr3_3:79759928-79759947	None:intergenic	50.0%
	CTCCACAGACCAAACAGACT+GGG	-	chr3_3:79759948-79759967	None:intergenic	50.0%
	TGTTTGTGTTGCGGTCAGAG+TGG	-	chr3_3:79760026-79760045	None:intergenic	50.0%
!!	AAAGTTAGCTCTGTGGGCTG+TGG	+	chr3_3:79760465-79760484	Msa0476040:three_prime_UTR	50.0%
	CCACCAAACTACTAGCGTGT+TGG	-	chr3_3:79760495-79760514	None:intergenic	50.0%
	CCAACACGCTAGTAGTTTGG+TGG	+	chr3_3:79760492-79760511	Msa0476040:three_prime_UTR	50.0%
	ATCCTGATCTGCACTCCTTG+AGG	-	chr3_3:79760521-79760540	None:intergenic	50.0%
	CTCTTTGGCGGAATAGAAGG+AGG	-	chr3_3:79760718-79760737	None:intergenic	50.0%
	ATAAGTGGAATCGCCGTCGA+CGG	-	chr3_3:79758875-79758894	None:intergenic	50.0%
	CGGCGATTCCACTTATCTCT+CGG	+	chr3_3:79758879-79758898	Msa0476040:CDS	50.0%
!!	CGTGGTATTGACATGATCGG+AGG	-	chr3_3:79758918-79758937	None:intergenic	50.0%
	CAGCAAATGCCGCAATTAGG+CGG	-	chr3_3:79759134-79759153	None:intergenic	50.0%
	AGGCAGCAAATGCCGCAATT+AGG	-	chr3_3:79759137-79759156	None:intergenic	50.0%
!	AATTGCGGCATTTGCTGCCT+TGG	+	chr3_3:79759137-79759156	Msa0476040:intron	50.0%
!!	CATTTGCTGCCTTGGCTTTG+AGG	+	chr3_3:79759145-79759164	Msa0476040:intron	50.0%
	TAAGTCCATCCATGTCAGGC+AGG	-	chr3_3:79759601-79759620	None:intergenic	50.0%
	TGAACTTACTTACGACCGGC+AGG	-	chr3_3:79759655-79759674	None:intergenic	50.0%
!!	CCAGAAATTCAGAGGCACCA+TGG	-	chr3_3:79759832-79759851	None:intergenic	50.0%
	CCATGGTGCCTCTGAATTTC+TGG	+	chr3_3:79759829-79759848	Msa0476040:CDS	50.0%
	GGGACTTCTTCTGAGCTGAT+AGG	-	chr3_3:79759928-79759947	None:intergenic	50.0%
	CTCCACAGACCAAACAGACT+GGG	-	chr3_3:79759948-79759967	None:intergenic	50.0%
	TGTTTGTGTTGCGGTCAGAG+TGG	-	chr3_3:79760026-79760045	None:intergenic	50.0%
!!	AAAGTTAGCTCTGTGGGCTG+TGG	+	chr3_3:79760465-79760484	Msa0476040:three_prime_UTR	50.0%
	CCACCAAACTACTAGCGTGT+TGG	-	chr3_3:79760495-79760514	None:intergenic	50.0%
	CCAACACGCTAGTAGTTTGG+TGG	+	chr3_3:79760492-79760511	Msa0476040:three_prime_UTR	50.0%
	ATCCTGATCTGCACTCCTTG+AGG	-	chr3_3:79760521-79760540	None:intergenic	50.0%
	CTCTTTGGCGGAATAGAAGG+AGG	-	chr3_3:79760718-79760737	None:intergenic	50.0%
!	TCCAGTGACCGGTTTCCCAT+CGG	+	chr3_3:79758835-79758854	Msa0476040:CDS	55.0%
	CACGCATTCCGATGGGAAAC+CGG	-	chr3_3:79758846-79758865	None:intergenic	55.0%
	GCGAGAACACGCATTCCGAT+GGG	-	chr3_3:79758853-79758872	None:intergenic	55.0%
	ATGCCGCAATTAGGCGGCAA+GGG	-	chr3_3:79759128-79759147	None:intergenic	55.0%
	AATGCCGCAATTAGGCGGCA+AGG	-	chr3_3:79759129-79759148	None:intergenic	55.0%
!!	TTGCTGCCTTGGCTTTGAGG+TGG	+	chr3_3:79759148-79759167	Msa0476040:intron	55.0%
	GGTGCACATCAGCGATTACC+AGG	-	chr3_3:79759580-79759599	None:intergenic	55.0%
	TGATGTGCACCTGCCTGACA+TGG	+	chr3_3:79759589-79759608	Msa0476040:CDS	55.0%
	GTCCCAGTCTGTTTGGTCTG+TGG	+	chr3_3:79759943-79759962	Msa0476040:CDS	55.0%
	GCTCCACAGACCAAACAGAC+TGG	-	chr3_3:79759949-79759968	None:intergenic	55.0%
!	GTAGTTTGGTGGCAGCCTCA+AGG	+	chr3_3:79760503-79760522	Msa0476040:three_prime_UTR	55.0%
!	AGCCTCAAGGAGTGCAGATC+AGG	+	chr3_3:79760516-79760535	Msa0476040:three_prime_UTR	55.0%
	GGGGCTTCTTCTGAGCTCAT+GGG	-	chr3_3:79760588-79760607	None:intergenic	55.0%
	ATGAGCTCAGAAGAAGCCCC+CGG	+	chr3_3:79760588-79760607	Msa0476040:three_prime_UTR	55.0%
	AGAAGAAGCCCCCGGTTGTT+TGG	+	chr3_3:79760596-79760615	Msa0476040:three_prime_UTR	55.0%
!	TCCAGTGACCGGTTTCCCAT+CGG	+	chr3_3:79758835-79758854	Msa0476040:CDS	55.0%
	CACGCATTCCGATGGGAAAC+CGG	-	chr3_3:79758846-79758865	None:intergenic	55.0%
	GCGAGAACACGCATTCCGAT+GGG	-	chr3_3:79758853-79758872	None:intergenic	55.0%
	ATGCCGCAATTAGGCGGCAA+GGG	-	chr3_3:79759128-79759147	None:intergenic	55.0%
	AATGCCGCAATTAGGCGGCA+AGG	-	chr3_3:79759129-79759148	None:intergenic	55.0%
!!	TTGCTGCCTTGGCTTTGAGG+TGG	+	chr3_3:79759148-79759167	Msa0476040:intron	55.0%
	GGTGCACATCAGCGATTACC+AGG	-	chr3_3:79759580-79759599	None:intergenic	55.0%
	TGATGTGCACCTGCCTGACA+TGG	+	chr3_3:79759589-79759608	Msa0476040:CDS	55.0%
	GTCCCAGTCTGTTTGGTCTG+TGG	+	chr3_3:79759943-79759962	Msa0476040:CDS	55.0%
	GCTCCACAGACCAAACAGAC+TGG	-	chr3_3:79759949-79759968	None:intergenic	55.0%
!	GTAGTTTGGTGGCAGCCTCA+AGG	+	chr3_3:79760503-79760522	Msa0476040:three_prime_UTR	55.0%
!	AGCCTCAAGGAGTGCAGATC+AGG	+	chr3_3:79760516-79760535	Msa0476040:three_prime_UTR	55.0%
	GGGGCTTCTTCTGAGCTCAT+GGG	-	chr3_3:79760588-79760607	None:intergenic	55.0%
	ATGAGCTCAGAAGAAGCCCC+CGG	+	chr3_3:79760588-79760607	Msa0476040:three_prime_UTR	55.0%
	AGAAGAAGCCCCCGGTTGTT+TGG	+	chr3_3:79760596-79760615	Msa0476040:three_prime_UTR	55.0%
	TCCGATGGGAAACCGGTCAC+TGG	-	chr3_3:79758839-79758858	None:intergenic	60.0%
	GGCGAGAACACGCATTCCGA+TGG	-	chr3_3:79758854-79758873	None:intergenic	60.0%
	ATGCGTGTTCTCGCCGTCGA+CGG	+	chr3_3:79758859-79758878	Msa0476040:CDS	60.0%
	CGCAATTAGGCGGCAAGGGA+CGG	-	chr3_3:79759124-79759143	None:intergenic	60.0%
	CGTCCCTTGCCGCCTAATTG+CGG	+	chr3_3:79759122-79759141	Msa0476040:intron	60.0%
	GTGCACCTGCCTGACATGGA+TGG	+	chr3_3:79759593-79759612	Msa0476040:CDS	60.0%
	GGAACTTGAGACGGACCTGC+CGG	+	chr3_3:79759637-79759656	Msa0476040:CDS	60.0%
	AGGACGTGGCAAGCCATCTC+CGG	+	chr3_3:79760329-79760348	Msa0476040:CDS	60.0%
	GGGGGCTTCTTCTGAGCTCA+TGG	-	chr3_3:79760589-79760608	None:intergenic	60.0%
	TCCGATGGGAAACCGGTCAC+TGG	-	chr3_3:79758839-79758858	None:intergenic	60.0%
	GGCGAGAACACGCATTCCGA+TGG	-	chr3_3:79758854-79758873	None:intergenic	60.0%
	ATGCGTGTTCTCGCCGTCGA+CGG	+	chr3_3:79758859-79758878	Msa0476040:CDS	60.0%
	CGCAATTAGGCGGCAAGGGA+CGG	-	chr3_3:79759124-79759143	None:intergenic	60.0%
	CGTCCCTTGCCGCCTAATTG+CGG	+	chr3_3:79759122-79759141	Msa0476040:intron	60.0%
	GTGCACCTGCCTGACATGGA+TGG	+	chr3_3:79759593-79759612	Msa0476040:CDS	60.0%
	GGAACTTGAGACGGACCTGC+CGG	+	chr3_3:79759637-79759656	Msa0476040:CDS	60.0%
	AGGACGTGGCAAGCCATCTC+CGG	+	chr3_3:79760329-79760348	Msa0476040:CDS	60.0%
	GGGGGCTTCTTCTGAGCTCA+TGG	-	chr3_3:79760589-79760608	None:intergenic	60.0%
	GGACGTGGCAAGCCATCTCC+GGG	+	chr3_3:79760330-79760349	Msa0476040:CDS	65.0%
	GGACGTGGCAAGCCATCTCC+GGG	+	chr3_3:79760330-79760349	Msa0476040:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	79758779	79760846	79758779	ID=Msa0476040;Name=Msa0476040
chr3_3	mRNA	79758779	79760846	79758779	ID=Msa0476040-mRNA-1;Parent=Msa0476040;Name=Msa0476040-mRNA-1;_AED=0.28;_eAED=0.28;_QI=47\|1\|1\|1\|1\|1\|4\|483\|194
chr3_3	exon	79758779	79758937	79758779	ID=Msa0476040-mRNA-1:exon:21625;Parent=Msa0476040-mRNA-1
chr3_3	exon	79759513	79759665	79759513	ID=Msa0476040-mRNA-1:exon:21626;Parent=Msa0476040-mRNA-1
chr3_3	exon	79759783	79760013	79759783	ID=Msa0476040-mRNA-1:exon:21627;Parent=Msa0476040-mRNA-1
chr3_3	exon	79760275	79760846	79760275	ID=Msa0476040-mRNA-1:exon:21628;Parent=Msa0476040-mRNA-1
chr3_3	five_prime_UTR	79758779	79758825	79758779	ID=Msa0476040-mRNA-1:five_prime_utr;Parent=Msa0476040-mRNA-1
chr3_3	CDS	79758826	79758937	79758826	ID=Msa0476040-mRNA-1:cds;Parent=Msa0476040-mRNA-1
chr3_3	CDS	79759513	79759665	79759513	ID=Msa0476040-mRNA-1:cds;Parent=Msa0476040-mRNA-1
chr3_3	CDS	79759783	79760013	79759783	ID=Msa0476040-mRNA-1:cds;Parent=Msa0476040-mRNA-1
chr3_3	CDS	79760275	79760363	79760275	ID=Msa0476040-mRNA-1:cds;Parent=Msa0476040-mRNA-1
chr3_3	three_prime_UTR	79760364	79760846	79760364	ID=Msa0476040-mRNA-1:three_prime_utr;Parent=Msa0476040-mRNA-1

Gene Sequence

>Msa0476040

ATGGATGACTCCAGTGACCGGTTTCCCATCGGAATGCGTGTTCTCGCCGTCGACGGCGATTCCACTTATCTCTCGGATTTAGAAACTCGCCTCCGATCATGTCAATACCACGTAACAACAGCTAGTGAAGCAAAAACGGCATTGACCATGTTGCGAGAAAACAAAGACAAGTTTGACCTGGTAATCGCTGATGTGCACCTGCCTGACATGGATGGACTTAAGCTGCTTGAACTTGTGGAACTTGAGACGGACCTGCCGGTCGTAATGTTTTCTGAATATAGCTATAATGAGCTAGTGATGAAGGCAGTTTTCCATGGTGCCTCTGAATTTCTGGTGAAACCTGTGAGATTAGAGCAGCTAAAGACCATTTGGCAGCATGTAATTCGGAAGAAGAAGGACAATGAGGACCTATCAGCTCAGAAGAAGTCCCAGTCTGTTTGGTCTGTGGAGCTGCACCACAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCCGAAAAGATTCTTGGTTTGATGAATGTTGAAAATATTACAAGGGAGGACGTGGCAAGCCATCTCCGGGCAATTTTCTAG

Protein sequence

>Msa0476040

MDDSSDRFPIGMRVLAVDGDSTYLSDLETRLRSCQYHVTTASEAKTALTMLRENKDKFDLVIADVHLPDMDGLKLLELVELETDLPVVMFSEYSYNELVMKAVFHGASEFLVKPVRLEQLKTIWQHVIRKKKDNEDLSAQKKSQSVWSVELHHKFVAAVNQLGIDKAVPEKILGLMNVENITREDVASHLRAIF*