Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477730 | XP_024634048.1 | 95.480 | 531 | 23 | 1 | 1 | 531 | 1 | 530 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477730 | sp|Q9SZD1|TCX5_ARATH | 40.585 | 547 | 248 | 17 | 13 | 531 | 24 | 521 | 1.73e-110 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477730 | A0A072V2F6 | 90.994 | 533 | 44 | 4 | 1 | 531 | 1 | 531 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0477730 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477730 | MtrunA17_Chr3g0139951 | 96.250 | 400 | 15 | 0 | 1 | 400 | 1 | 400 | 0.0 | 795 |
| Msa0477730 | MtrunA17_Chr6g0485811 | 47.294 | 425 | 195 | 10 | 125 | 530 | 107 | 521 | 5.40e-114 | 350 |
| Msa0477730 | MtrunA17_Chr8g0390351 | 45.227 | 440 | 215 | 11 | 109 | 530 | 44 | 475 | 1.44e-111 | 343 |
| Msa0477730 | MtrunA17_Chr3g0139941 | 69.231 | 130 | 7 | 2 | 402 | 531 | 1 | 97 | 1.06e-48 | 166 |
| Msa0477730 | MtrunA17_Chr1g0149101 | 44.604 | 139 | 73 | 4 | 148 | 282 | 498 | 636 | 8.53e-29 | 121 |
| Msa0477730 | MtrunA17_Chr5g0394661 | 48.800 | 125 | 60 | 4 | 148 | 269 | 488 | 611 | 4.08e-27 | 115 |
| Msa0477730 | MtrunA17_Chr1g0205031 | 36.719 | 128 | 68 | 5 | 143 | 267 | 409 | 526 | 6.77e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477730 | AT4G29000.1 | 40.585 | 547 | 248 | 17 | 13 | 531 | 24 | 521 | 1.76e-111 | 344 |
| Msa0477730 | AT2G20110.3 | 42.889 | 450 | 215 | 11 | 84 | 531 | 66 | 475 | 2.52e-103 | 321 |
| Msa0477730 | AT2G20110.1 | 42.889 | 450 | 215 | 11 | 84 | 531 | 66 | 475 | 4.96e-103 | 321 |
| Msa0477730 | AT2G20110.2 | 42.889 | 450 | 215 | 11 | 84 | 531 | 66 | 475 | 5.29e-103 | 321 |
| Msa0477730 | AT5G25790.1 | 36.531 | 490 | 254 | 15 | 49 | 532 | 11 | 449 | 6.72e-83 | 265 |
| Msa0477730 | AT5G25790.2 | 36.531 | 490 | 254 | 15 | 49 | 532 | 11 | 449 | 2.15e-82 | 265 |
| Msa0477730 | AT5G25790.3 | 36.327 | 490 | 251 | 16 | 49 | 532 | 11 | 445 | 2.82e-82 | 264 |
| Msa0477730 | AT3G16160.1 | 29.157 | 415 | 203 | 14 | 116 | 525 | 34 | 362 | 5.94e-34 | 132 |
| Msa0477730 | AT3G22760.2 | 41.401 | 157 | 87 | 3 | 126 | 280 | 186 | 339 | 1.31e-28 | 119 |
| Msa0477730 | AT3G22760.1 | 41.401 | 157 | 87 | 3 | 126 | 280 | 309 | 462 | 2.37e-28 | 119 |
| Msa0477730 | AT4G14770.1 | 46.774 | 124 | 64 | 2 | 148 | 269 | 375 | 498 | 3.46e-28 | 119 |
| Msa0477730 | AT4G14770.3 | 46.774 | 124 | 64 | 2 | 148 | 269 | 356 | 479 | 5.35e-28 | 119 |
| Msa0477730 | AT4G14770.2 | 46.774 | 124 | 64 | 2 | 148 | 269 | 355 | 478 | 5.43e-28 | 119 |
| Msa0477730 | AT3G22780.1 | 42.029 | 138 | 78 | 2 | 148 | 283 | 401 | 538 | 6.96e-28 | 118 |
| Msa0477730 | AT3G04850.1 | 44.615 | 130 | 70 | 2 | 142 | 269 | 447 | 576 | 4.44e-27 | 115 |
Find 132 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 3_3:+82041388 | None:intergenic |
| GCTAAAGTACTTACAATTTA+AGG | 0.122883 | 3_3:+82043238 | None:intergenic |
| ATTATTCTTGGTAGCATTAA+AGG | 0.161832 | 3_3:-82041193 | Msa0477730:CDS |
| TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 3_3:+82042533 | None:intergenic |
| CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 3_3:+82043044 | None:intergenic |
| ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 3_3:+82041866 | None:intergenic |
| GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 3_3:-82042589 | Msa0477730:CDS |
| TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 3_3:-82043310 | Msa0477730:CDS |
| CATGCAGAGAATGGAATTTC+CGG | 0.278353 | 3_3:+82045128 | None:intergenic |
| TACTTACAATTTAAGGCATT+TGG | 0.284828 | 3_3:+82043245 | None:intergenic |
| TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 3_3:+82042534 | None:intergenic |
| AAAATCACATACCTGAATTT+AGG | 0.297536 | 3_3:+82042041 | None:intergenic |
| TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 3_3:+82043043 | None:intergenic |
| AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 3_3:+82042576 | None:intergenic |
| TTGATATTGACATTCATAAT+AGG | 0.314713 | 3_3:-82041420 | Msa0477730:CDS |
| GTGTCTGAAATTCAATTAAT+AGG | 0.329611 | 3_3:-82042790 | Msa0477730:CDS |
| GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 3_3:-82041234 | Msa0477730:CDS |
| TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 3_3:-82044835 | Msa0477730:CDS |
| CTTGGTGAACTGATTATTCT+TGG | 0.340192 | 3_3:-82041205 | Msa0477730:CDS |
| TCCTCAGGCGCAAATGCATT+TGG | 0.353209 | 3_3:-82044706 | Msa0477730:CDS |
| AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 3_3:+82041531 | None:intergenic |
| CTACTAACCATAGAAACTTC+TGG | 0.357925 | 3_3:+82042964 | None:intergenic |
| TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 3_3:+82041463 | None:intergenic |
| ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 3_3:-82041223 | Msa0477730:CDS |
| AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 3_3:+82044534 | None:intergenic |
| TCTTGGTAGCATTAAAGGTT+AGG | 0.390061 | 3_3:-82041188 | None:intergenic |
| AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 3_3:-82041476 | Msa0477730:CDS |
| TTCGGTAATGGTTCTGCAAA+TGG | 0.394963 | 3_3:-82041343 | Msa0477730:CDS |
| AACACTCACAATACTTCTTA+AGG | 0.401328 | 3_3:+82042731 | None:intergenic |
| TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 3_3:-82042775 | Msa0477730:CDS |
| TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 3_3:-82042052 | Msa0477730:intron |
| GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 3_3:+82044781 | None:intergenic |
| TGTTTCCACGGCCGTCTCAC+TGG | 0.412786 | 3_3:+82044672 | None:intergenic |
| CGGTGAATCCACCGTGGGAG+TGG | 0.417054 | 3_3:+82045200 | None:intergenic |
| GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 3_3:-82042559 | Msa0477730:CDS |
| ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 3_3:-82042574 | Msa0477730:CDS |
| TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 3_3:-82041377 | Msa0477730:CDS |
| AGACGAAAACATGCAGAGAA+TGG | 0.447595 | 3_3:+82045119 | None:intergenic |
| GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 3_3:-82044544 | Msa0477730:CDS |
| TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 3_3:-82043126 | Msa0477730:CDS |
| AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 3_3:+82042097 | None:intergenic |
| CGACGCTGGATTTAACTAAT+CGG | 0.448613 | 3_3:-82044854 | Msa0477730:CDS |
| TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 3_3:-82041577 | Msa0477730:intron |
| CATGACTGCTCAACACCAAC+AGG | 0.467343 | 3_3:-82042461 | Msa0477730:intron |
| GGTTTAAGAAGAAACGTTGA+TGG | 0.467781 | 3_3:-82044889 | Msa0477730:exon |
| ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 3_3:+82041222 | None:intergenic |
| CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 3_3:-82041260 | Msa0477730:CDS |
| CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 3_3:-82041255 | Msa0477730:CDS |
| GAAACTTTACCTATGCGTTA+CGG | 0.476869 | 3_3:+82045035 | None:intergenic |
| AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 3_3:+82042098 | None:intergenic |
| TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 3_3:-82043318 | Msa0477730:CDS |
| GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 3_3:-82043048 | Msa0477730:CDS |
| GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 3_3:+82042113 | None:intergenic |
| GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 3_3:+82041227 | None:intergenic |
| GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 3_3:+82044606 | None:intergenic |
| GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 3_3:-82044868 | Msa0477730:CDS |
| CGGGAACAAAGGAAGCTGAC+AGG | 0.494375 | 3_3:+82042090 | None:intergenic |
| TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 3_3:+82042546 | None:intergenic |
| TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 3_3:+82043330 | None:intergenic |
| AGCGAAACTAACTGCGGGCG+CGG | 0.501792 | 3_3:+82044582 | None:intergenic |
| AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 3_3:-82042757 | Msa0477730:CDS |
| TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 3_3:-82044816 | Msa0477730:CDS |
| TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 3_3:-82041576 | Msa0477730:intron |
| CTGAAATTCAATTAATAGGA+AGG | 0.519135 | 3_3:-82042786 | Msa0477730:CDS |
| GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 3_3:-82041233 | Msa0477730:CDS |
| CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 3_3:-82041286 | Msa0477730:CDS |
| ATCCACCGTGGGAGTGGGAG+TGG | 0.522100 | 3_3:+82045206 | None:intergenic |
| ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 3_3:+82041468 | None:intergenic |
| GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 3_3:-82042580 | Msa0477730:CDS |
| CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 3_3:+82042707 | None:intergenic |
| AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 3_3:-82044677 | Msa0477730:CDS |
| CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 3_3:-82044536 | Msa0477730:CDS |
| GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 3_3:-82041861 | Msa0477730:intron |
| GGTGAATCCACCGTGGGAGT+GGG | 0.541138 | 3_3:+82045201 | None:intergenic |
| TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 3_3:+82044765 | None:intergenic |
| TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 3_3:+82044660 | None:intergenic |
| AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 3_3:+82044525 | None:intergenic |
| ACCGTCGGATTTGCCTCCTC+AGG | 0.544028 | 3_3:-82044721 | Msa0477730:CDS |
| TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 3_3:-82041946 | Msa0477730:intron |
| GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 3_3:+82044546 | None:intergenic |
| TCCAAATGCATTTGCGCCTG+AGG | 0.547952 | 3_3:+82044705 | None:intergenic |
| CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 3_3:+82044645 | None:intergenic |
| GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 3_3:-82043058 | Msa0477730:CDS |
| GGAGGCAAATCCGACGGTGT+CGG | 0.569363 | 3_3:+82044726 | None:intergenic |
| ATAGGCAGTGTCGGGAACAA+AGG | 0.570031 | 3_3:+82042079 | None:intergenic |
| GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 3_3:-82044813 | Msa0477730:CDS |
| AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 3_3:-82041564 | Msa0477730:CDS |
| CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 3_3:+82044740 | None:intergenic |
| AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 3_3:+82041276 | None:intergenic |
| TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 3_3:-82042611 | Msa0477730:CDS |
| TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 3_3:+82041397 | None:intergenic |
| AAATGCATTTGCGCCTGAGG+AGG | 0.589658 | 3_3:+82044708 | None:intergenic |
| GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 3_3:-82043037 | Msa0477730:CDS |
| TGACGGCGGAGAACGATCGC+CGG | 0.591548 | 3_3:+82045166 | None:intergenic |
| GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 3_3:+82044768 | None:intergenic |
| CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 3_3:+82044539 | None:intergenic |
| CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 3_3:-82043055 | Msa0477730:CDS |
| AATTACAATCCGTAACGCAT+AGG | 0.598835 | 3_3:-82045044 | Msa0477730:intron |
| CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 3_3:-82043317 | Msa0477730:CDS |
| GAATCAGCGAAACTAACTGC+GGG | 0.605382 | 3_3:+82044577 | None:intergenic |
| GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 3_3:+82044729 | None:intergenic |
| GCTAACCACTCCCACTCCCA+CGG | 0.609570 | 3_3:-82045211 | Msa0477730:five_prime_UTR |
| TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 3_3:+82042549 | None:intergenic |
| GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 3_3:-82043111 | Msa0477730:CDS |
| GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 3_3:-82044625 | Msa0477730:CDS |
| GGGAACAAAGGAAGCTGACA+GGG | 0.612362 | 3_3:+82042091 | None:intergenic |
| GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 3_3:+82044597 | None:intergenic |
| ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 3_3:-82043125 | Msa0477730:CDS |
| TGTTGCGGTGAATCCACCGT+GGG | 0.620785 | 3_3:+82045195 | None:intergenic |
| TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 3_3:-82041372 | Msa0477730:CDS |
| ATTCACCGCAACAAACTCTC+CGG | 0.623378 | 3_3:-82045185 | Msa0477730:five_prime_UTR |
| GCCTGAGGAGGCAAATCCGA+CGG | 0.632396 | 3_3:+82044720 | None:intergenic |
| GTCAATCTTTCTCGTCACAC+CGG | 0.633035 | 3_3:-82045147 | Msa0477730:five_prime_UTR |
| TCATAATAATCTGAACAATG+AGG | 0.638704 | 3_3:-82043070 | Msa0477730:CDS |
| GGTGTGACGAGAAAGATTGA+CGG | 0.639361 | 3_3:+82045149 | None:intergenic |
| TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 3_3:+82044609 | None:intergenic |
| GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 3_3:+82044789 | None:intergenic |
| TAACTAATCGGAAATTTGCG+CGG | 0.669670 | 3_3:-82044842 | Msa0477730:CDS |
| ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 3_3:+82042550 | None:intergenic |
| TCTACGACCTCCGACACCGT+CGG | 0.672076 | 3_3:-82044736 | Msa0477730:CDS |
| TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 3_3:-82041373 | Msa0477730:CDS |
| GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 3_3:+82044642 | None:intergenic |
| CGACGGACCTCCACATGCGG+CGG | 0.682146 | 3_3:+82044806 | None:intergenic |
| GTACGACGGACCTCCACATG+CGG | 0.684282 | 3_3:+82044803 | None:intergenic |
| GATCGCCGGAGAGTTTGTTG+CGG | 0.684618 | 3_3:+82045180 | None:intergenic |
| AACCACTCCCACTCCCACGG+TGG | 0.698359 | 3_3:-82045208 | Msa0477730:five_prime_UTR |
| TTGTTGCGGTGAATCCACCG+TGG | 0.703380 | 3_3:+82045194 | None:intergenic |
| TTCTTGAAGCAAGAAATCGA+CGG | 0.709627 | 3_3:+82045065 | None:intergenic |
| TGAATCAGCGAAACTAACTG+CGG | 0.724718 | 3_3:+82044576 | None:intergenic |
| GTGACGAGAAAGATTGACGG+CGG | 0.725574 | 3_3:+82045152 | None:intergenic |
| ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 3_3:+82044759 | None:intergenic |
| GGAAACAATCACCACCACAG+TGG | 0.761756 | 3_3:-82044656 | Msa0477730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAACTAATAAGATT+TGG | + | chr3_3:82042848-82042867 | None:intergenic | 10.0% |
| !!! | ATCTTATTAGTTTTTATAAA+AGG | - | chr3_3:82042849-82042868 | Msa0477730:intron | 10.0% |
| !! | TAAAAGATATTAATTACAAT+CGG | + | chr3_3:82044238-82044257 | None:intergenic | 10.0% |
| !! | AATATGAATATAAAAAAAAC+CGG | - | chr3_3:82044421-82044440 | Msa0477730:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTCCTGAA+TGG | - | chr3_3:82041970-82041989 | Msa0477730:intron | 15.0% |
| !!! | TTTTTTTTTTTTTCCTGAAT+GGG | - | chr3_3:82041971-82041990 | Msa0477730:intron | 15.0% |
| !!! | ATGAATTATTGACTTAAAAT+TGG | + | chr3_3:82042664-82042683 | None:intergenic | 15.0% |
| !!! | AATGATCAGTATATTTTTAT+TGG | + | chr3_3:82042897-82042916 | None:intergenic | 15.0% |
| !!! | CTTTCCATTTATATTTTATA+CGG | - | chr3_3:82042921-82042940 | Msa0477730:intron | 15.0% |
| !!! | TATTGATAGCTAAATTAATA+GGG | + | chr3_3:82044191-82044210 | None:intergenic | 15.0% |
| !!! | ATATTGATAGCTAAATTAAT+AGG | + | chr3_3:82044192-82044211 | None:intergenic | 15.0% |
| !!! | GGTTGCATTTTATTTATTTT+TGG | - | chr3_3:82041992-82042011 | Msa0477730:intron | 20.0% |
| !!! | ATTTTAGTATCAGAAACATA+AGG | - | chr3_3:82042480-82042499 | Msa0477730:CDS | 20.0% |
| !!! | TTTGTTAATGATTGCATTTT+CGG | - | chr3_3:82042781-82042800 | Msa0477730:CDS | 20.0% |
| !!! | ATATTTTTATTGGCAAGTTT+AGG | + | chr3_3:82042887-82042906 | None:intergenic | 20.0% |
| !! | AAATCAATGTGAAACTAATA+AGG | - | chr3_3:82044069-82044088 | Msa0477730:intron | 20.0% |
| !!! | AGGTCTTGAAATTATTTTAT+AGG | + | chr3_3:82044344-82044363 | None:intergenic | 20.0% |
| !!! | TGTGATTTTTTTCAATCATT+AGG | - | chr3_3:82044375-82044394 | Msa0477730:intron | 20.0% |
| !! | ACATGAAATATTGTTAATTC+CGG | + | chr3_3:82044443-82044462 | None:intergenic | 20.0% |
| !! | TTAACAATATTTCATGTTGA+AGG | - | chr3_3:82044446-82044465 | Msa0477730:intron | 20.0% |
| !! | TTGATATTGACATTCATAAT+AGG | - | chr3_3:82044982-82045001 | Msa0477730:intron | 20.0% |
| ! | TTTGAAAACTCAATTCGAAA+CGG | - | chr3_3:82041406-82041425 | Msa0477730:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | - | chr3_3:82042086-82042105 | Msa0477730:CDS | 25.0% |
| !!! | TGTGTATGGTTTTTTTTTTG+TGG | + | chr3_3:82042134-82042153 | None:intergenic | 25.0% |
| ! | ATGATAAGAATGTTAGTGTA+TGG | - | chr3_3:82042258-82042277 | Msa0477730:intron | 25.0% |
| !! | CATAATTTAGAATGCAGAAT+TGG | - | chr3_3:82042433-82042452 | Msa0477730:intron | 25.0% |
| !!! | TTGGAGAACTTTTAAAGATA+TGG | - | chr3_3:82042582-82042601 | Msa0477730:CDS | 25.0% |
| !!! | AGAACTTTTAAAGATATGGA+TGG | - | chr3_3:82042586-82042605 | Msa0477730:CDS | 25.0% |
| !!! | CCAAGTTCTATTTTTAAACA+TGG | + | chr3_3:82042721-82042740 | None:intergenic | 25.0% |
| ! | CCATGTTTAAAAATAGAACT+TGG | - | chr3_3:82042718-82042737 | Msa0477730:CDS | 25.0% |
| !! | TTGTTAATGATTGCATTTTC+GGG | - | chr3_3:82042782-82042801 | Msa0477730:CDS | 25.0% |
| ! | TATAAATTTGCCACTAAACT+AGG | - | chr3_3:82042816-82042835 | Msa0477730:intron | 25.0% |
| !!! | ATAAAACAGTCTTTTTGAAG+GGG | + | chr3_3:82042948-82042967 | None:intergenic | 25.0% |
| !! | GATAAAACAGTCTTTTTGAA+GGG | + | chr3_3:82042949-82042968 | None:intergenic | 25.0% |
| !! | AGATAAAACAGTCTTTTTGA+AGG | + | chr3_3:82042950-82042969 | None:intergenic | 25.0% |
| !! | TACTTACAATTTAAGGCATT+TGG | + | chr3_3:82043160-82043179 | None:intergenic | 25.0% |
| !! | GCTAAAGTACTTACAATTTA+AGG | + | chr3_3:82043167-82043186 | None:intergenic | 25.0% |
| ! | TGTATGAAAAACTTTCATCA+AGG | - | chr3_3:82043192-82043211 | Msa0477730:intron | 25.0% |
| !! | ATTGTTATAAAGAAAGTGCA+CGG | + | chr3_3:82043234-82043253 | None:intergenic | 25.0% |
| ! | TCATAATAATCTGAACAATG+AGG | - | chr3_3:82043332-82043351 | Msa0477730:CDS | 25.0% |
| ! | GTTTGTTCAAGACATTTAAA+TGG | + | chr3_3:82043582-82043601 | None:intergenic | 25.0% |
| !! | GTGTCTGAAATTCAATTAAT+AGG | - | chr3_3:82043612-82043631 | Msa0477730:intron | 25.0% |
| ! | CTGAAATTCAATTAATAGGA+AGG | - | chr3_3:82043616-82043635 | Msa0477730:intron | 25.0% |
| !!! | AACTAAGAAGTTGATAAATG+CGG | + | chr3_3:82044128-82044147 | None:intergenic | 25.0% |
| !!! | AATTATTTTATAGGCAGTGT+CGG | + | chr3_3:82044335-82044354 | None:intergenic | 25.0% |
| ! | TAATTTCAAGACCTAAATTC+AGG | - | chr3_3:82044350-82044369 | Msa0477730:intron | 25.0% |
| ! | AAAATCACATACCTGAATTT+AGG | + | chr3_3:82044364-82044383 | None:intergenic | 25.0% |
| !! | AATTTGATGCATCTATTTTG+TGG | - | chr3_3:82044608-82044627 | Msa0477730:CDS | 25.0% |
| ! | ATCAAATGTGTGAAAAAGTA+GGG | + | chr3_3:82044775-82044794 | None:intergenic | 25.0% |
| ! | AAAACAATTACAATGTCAGT+CGG | + | chr3_3:82044806-82044825 | None:intergenic | 25.0% |
| ! | AATAGAAGCTTCATATTTCT+CGG | + | chr3_3:82044874-82044893 | None:intergenic | 25.0% |
| !! | ATTATTCTTGGTAGCATTAA+AGG | - | chr3_3:82045209-82045228 | Msa0477730:five_prime_UTR | 25.0% |
| ! | AAGCTTAACGAGATCATTTT+TGG | - | chr3_3:82041466-82041485 | Msa0477730:CDS | 30.0% |
| AAATAAAATGCAACCCATTC+AGG | + | chr3_3:82041987-82042006 | None:intergenic | 30.0% | |
| AAAAAACCATACACAAGTGA+AGG | - | chr3_3:82042139-82042158 | Msa0477730:intron | 30.0% | |
| ! | TAACAATTTCGGCATTTTGA+CGG | - | chr3_3:82042197-82042216 | Msa0477730:intron | 30.0% |
| TAATTAACTACACGTTGTGT+TGG | - | chr3_3:82042328-82042347 | Msa0477730:intron | 30.0% | |
| AATGCAGAATTGGATGTATT+AGG | - | chr3_3:82042443-82042462 | Msa0477730:intron | 30.0% | |
| ATGCAGAATTGGATGTATTA+GGG | - | chr3_3:82042444-82042463 | Msa0477730:intron | 30.0% | |
| ATGTATTAGGGATGTATGTT+TGG | - | chr3_3:82042456-82042475 | Msa0477730:intron | 30.0% | |
| TTAGCTTCTATTTGAAGACA+AGG | - | chr3_3:82042516-82042535 | Msa0477730:CDS | 30.0% | |
| TAGCTTCTATTTGAAGACAA+GGG | - | chr3_3:82042517-82042536 | Msa0477730:CDS | 30.0% | |
| !! | TACTAATGTAAAGAGCATCA+GGG | - | chr3_3:82042618-82042637 | Msa0477730:CDS | 30.0% |
| ATGCAATCATTAACAAACCT+CGG | + | chr3_3:82042778-82042797 | None:intergenic | 30.0% | |
| GGGACCGTATAAAATATAAA+TGG | + | chr3_3:82042928-82042947 | None:intergenic | 30.0% | |
| !!! | TTTAACCCTGCTTTATTTTG+AGG | + | chr3_3:82043093-82043112 | None:intergenic | 30.0% |
| TCAAAATAAAGCAGGGTTAA+AGG | - | chr3_3:82043092-82043111 | Msa0477730:CDS | 30.0% | |
| !!! | ATTTTTGGTCTGAAAGCATT+TGG | + | chr3_3:82043399-82043418 | None:intergenic | 30.0% |
| !!! | ATAGAAACTTCTGGTTTTTG+CGG | + | chr3_3:82043432-82043451 | None:intergenic | 30.0% |
| ! | CAGTCTTTTGAGCTAAAATT+TGG | - | chr3_3:82043504-82043523 | Msa0477730:intron | 30.0% |
| !! | GGTGCTGTTAATAACTATTA+TGG | - | chr3_3:82043525-82043544 | Msa0477730:intron | 30.0% |
| !!! | CTGATATTTTAGCTTACTTG+TGG | - | chr3_3:82043554-82043573 | Msa0477730:intron | 30.0% |
| TAAATGTCTTGAACAAACTC+AGG | - | chr3_3:82043584-82043603 | Msa0477730:intron | 30.0% | |
| ! | TTAATAGGAAGGCACAATAA+AGG | - | chr3_3:82043627-82043646 | Msa0477730:intron | 30.0% |
| AACACTCACAATACTTCTTA+AGG | + | chr3_3:82043674-82043693 | None:intergenic | 30.0% | |
| ! | ATTTACAATTTTCAGAGCAG+AGG | + | chr3_3:82043710-82043729 | None:intergenic | 30.0% |
| ! | ATTGACTGCAAGAATTTTGA+AGG | - | chr3_3:82043732-82043751 | Msa0477730:intron | 30.0% |
| ! | AAAAACCAGGAAAGTTTTTC+TGG | - | chr3_3:82043891-82043910 | Msa0477730:intron | 30.0% |
| GCTTCTTTGCATTATTGATA+CGG | - | chr3_3:82043965-82043984 | Msa0477730:intron | 30.0% | |
| TTAGTTACTCTTTCTGTTGT+AGG | - | chr3_3:82044014-82044033 | Msa0477730:intron | 30.0% | |
| TAGTTACTCTTTCTGTTGTA+GGG | - | chr3_3:82044015-82044034 | Msa0477730:intron | 30.0% | |
| CCAAACATAGTGAATTTGAA+TGG | + | chr3_3:82044044-82044063 | None:intergenic | 30.0% | |
| CCATTCAAATTCACTATGTT+TGG | - | chr3_3:82044041-82044060 | Msa0477730:intron | 30.0% | |
| !! | ACTAAGAAGTTGATAAATGC+GGG | + | chr3_3:82044127-82044146 | None:intergenic | 30.0% |
| !!! | TTAGTTCTGTTTTAATCCCT+TGG | - | chr3_3:82044142-82044161 | Msa0477730:intron | 30.0% |
| AAATTAATAGGGAAGTAGCA+AGG | + | chr3_3:82044180-82044199 | None:intergenic | 30.0% | |
| !! | CGCTATCTTGAATTTTAATC+AGG | - | chr3_3:82044258-82044277 | Msa0477730:intron | 30.0% |
| !! | ATTATTTTATAGGCAGTGTC+GGG | + | chr3_3:82044334-82044353 | None:intergenic | 30.0% |
| !! | TTTTTCAATCATTAGGTGAG+CGG | - | chr3_3:82044382-82044401 | Msa0477730:intron | 30.0% |
| ! | TTTCCAAATTTTATGCTGCT+AGG | - | chr3_3:82044668-82044687 | Msa0477730:CDS | 30.0% |
| TCAAATGTGTGAAAAAGTAG+GGG | + | chr3_3:82044774-82044793 | None:intergenic | 30.0% | |
| GATCAAATGTGTGAAAAAGT+AGG | + | chr3_3:82044776-82044795 | None:intergenic | 30.0% | |
| TTCAAATTTCCAGAAATGAG+AGG | - | chr3_3:82044825-82044844 | Msa0477730:CDS | 30.0% | |
| TCAAATTTCCAGAAATGAGA+GGG | - | chr3_3:82044826-82044845 | Msa0477730:CDS | 30.0% | |
| CACATCAATTTAAGTGTTTC+TGG | + | chr3_3:82045017-82045036 | None:intergenic | 30.0% | |
| TAAATTGATGTGTGATGAAC+AGG | - | chr3_3:82045025-82045044 | Msa0477730:intron | 30.0% | |
| TTCTTGAAGCAAGAAATCGA+CGG | + | chr3_3:82041340-82041359 | None:intergenic | 35.0% | |
| AATTACAATCCGTAACGCAT+AGG | - | chr3_3:82041358-82041377 | Msa0477730:CDS | 35.0% | |
| GAAACTTTACCTATGCGTTA+CGG | + | chr3_3:82041370-82041389 | None:intergenic | 35.0% | |
| GGTTTAAGAAGAAACGTTGA+TGG | - | chr3_3:82041513-82041532 | Msa0477730:CDS | 35.0% | |
| TAACTAATCGGAAATTTGCG+CGG | - | chr3_3:82041560-82041579 | Msa0477730:CDS | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGTCCG+GGG | + | chr3_3:82042125-82042144 | None:intergenic | 35.0% |
| !!! | GTTTTTTTTTTGTGGTGTCC+GGG | + | chr3_3:82042126-82042145 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTTTGTGGTGTC+CGG | + | chr3_3:82042127-82042146 | None:intergenic | 35.0% |
| GTTGTTCGACCTAACAATTT+CGG | - | chr3_3:82042186-82042205 | Msa0477730:intron | 35.0% | |
| GTCAAAATGCCGAAATTGTT+AGG | + | chr3_3:82042198-82042217 | None:intergenic | 35.0% | |
| TTAAATGCAACACAATCCAC+AGG | + | chr3_3:82042234-82042253 | None:intergenic | 35.0% | |
| TGTGCGAAAAACATGATTCT+TGG | - | chr3_3:82042563-82042582 | Msa0477730:CDS | 35.0% | |
| !! | GTACTAATGTAAAGAGCATC+AGG | - | chr3_3:82042617-82042636 | Msa0477730:CDS | 35.0% |
| !!! | TATTTTGAGGCTGTGATCTA+GGG | + | chr3_3:82043080-82043099 | None:intergenic | 35.0% |
| !!! | TTATTTTGAGGCTGTGATCT+AGG | + | chr3_3:82043081-82043100 | None:intergenic | 35.0% |
| ! | TAGCTAATTTTGCAACTGCA+AGG | - | chr3_3:82043253-82043272 | Msa0477730:CDS | 35.0% |
| GCAAAAACCAGAAGTTTCTA+TGG | - | chr3_3:82043431-82043450 | Msa0477730:intron | 35.0% | |
| CTACTAACCATAGAAACTTC+TGG | + | chr3_3:82043441-82043460 | None:intergenic | 35.0% | |
| CTCCCTCATGTATTTATAGT+TGG | - | chr3_3:82043471-82043490 | Msa0477730:intron | 35.0% | |
| CGCCAACTATAAATACATGA+GGG | + | chr3_3:82043476-82043495 | None:intergenic | 35.0% | |
| ACGCCAACTATAAATACATG+AGG | + | chr3_3:82043477-82043496 | None:intergenic | 35.0% | |
| !! | ATTTTGAAGGAAGTGACGAA+TGG | - | chr3_3:82043745-82043764 | Msa0477730:intron | 35.0% |
| ! | TAGTCTAGTTCAAATCAGAC+AGG | - | chr3_3:82043791-82043810 | Msa0477730:intron | 35.0% |
| ! | TCTCTTCTTGGGTGTTATAT+GGG | + | chr3_3:82043871-82043890 | None:intergenic | 35.0% |
| ! | TTCTCTTCTTGGGTGTTATA+TGG | + | chr3_3:82043872-82043891 | None:intergenic | 35.0% |
| !!! | TCCTGGTTTTTTCTCTTCTT+GGG | + | chr3_3:82043882-82043901 | None:intergenic | 35.0% |
| !!! | TTCCTGGTTTTTTCTCTTCT+TGG | + | chr3_3:82043883-82043902 | None:intergenic | 35.0% |
| ATTTGCCAGAAAAACTTTCC+TGG | + | chr3_3:82043899-82043918 | None:intergenic | 35.0% | |
| CATTATTGATACGGTTTCGT+TGG | - | chr3_3:82043974-82043993 | Msa0477730:intron | 35.0% | |
| !! | CTAAGAAGTTGATAAATGCG+GGG | + | chr3_3:82044126-82044145 | None:intergenic | 35.0% |
| ! | AAGGAAATTGATGGTTCCAA+GGG | + | chr3_3:82044161-82044180 | None:intergenic | 35.0% |
| ! | GATTTTTCACATTCTGTGTC+TGG | + | chr3_3:82044492-82044511 | None:intergenic | 35.0% |
| ATTTGTCTTTGCAGCTTCTT+TGG | + | chr3_3:82044539-82044558 | None:intergenic | 35.0% | |
| ! | TTGATGCATCTATTTTGTGG+TGG | - | chr3_3:82044611-82044630 | Msa0477730:CDS | 35.0% |
| TGTCCTAGCAGCATAAAATT+TGG | + | chr3_3:82044674-82044693 | None:intergenic | 35.0% | |
| CTTGGTGAACTGATTATTCT+TGG | - | chr3_3:82045197-82045216 | Msa0477730:five_prime_UTR | 35.0% | |
| CATGCAGAGAATGGAATTTC+CGG | + | chr3_3:82041277-82041296 | None:intergenic | 40.0% | |
| AGACGAAAACATGCAGAGAA+TGG | + | chr3_3:82041286-82041305 | None:intergenic | 40.0% | |
| !! | ATCGTTGAGTTGTCTTTTGC+AGG | - | chr3_3:82041492-82041511 | Msa0477730:CDS | 40.0% |
| CGACGCTGGATTTAACTAAT+CGG | - | chr3_3:82041548-82041567 | Msa0477730:CDS | 40.0% | |
| ! | ATTTTCAGTCACCAGTGAGA+CGG | - | chr3_3:82041719-82041738 | Msa0477730:intron | 40.0% |
| TGAATCAGCGAAACTAACTG+CGG | + | chr3_3:82041829-82041848 | None:intergenic | 40.0% | |
| TGTTGATGCATATCGAACAC+CGG | - | chr3_3:82042351-82042370 | Msa0477730:intron | 40.0% | |
| CAGAAACATAAGGCTTATGC+TGG | - | chr3_3:82042490-82042509 | Msa0477730:CDS | 40.0% | |
| ! | TTGGTGATTGCCTAGTTTAG+TGG | + | chr3_3:82042829-82042848 | None:intergenic | 40.0% |
| TCACAGCCTCAAAATAAAGC+AGG | - | chr3_3:82043084-82043103 | Msa0477730:CDS | 40.0% | |
| CACAGCCTCAAAATAAAGCA+GGG | - | chr3_3:82043085-82043104 | Msa0477730:CDS | 40.0% | |
| TCATTCCAATTGCCTCCTTT+CGG | + | chr3_3:82043362-82043381 | None:intergenic | 40.0% | |
| ATGTCTTGAACAAACTCAGG+AGG | - | chr3_3:82043587-82043606 | Msa0477730:intron | 40.0% | |
| AAAGGATGTCACTGCAAGAA+AGG | - | chr3_3:82043645-82043664 | Msa0477730:intron | 40.0% | |
| GCAACTAATGCTGCCATTAA+TGG | - | chr3_3:82043813-82043832 | Msa0477730:intron | 40.0% | |
| AAGTCCAACTGCTCCATTAA+TGG | + | chr3_3:82043829-82043848 | None:intergenic | 40.0% | |
| ATTAATGGAGCAGTTGGACT+TGG | - | chr3_3:82043828-82043847 | Msa0477730:intron | 40.0% | |
| TGTTATATGGGTTCCAGAGA+TGG | + | chr3_3:82043859-82043878 | None:intergenic | 40.0% | |
| ACCCAAGAAGAGAAAAAACC+AGG | - | chr3_3:82043878-82043897 | Msa0477730:intron | 40.0% | |
| !! | TAATGCAAAGAAGCACCTGT+TGG | + | chr3_3:82043959-82043978 | None:intergenic | 40.0% |
| ! | CAAGGAAATTGATGGTTCCA+AGG | + | chr3_3:82044162-82044181 | None:intergenic | 40.0% |
| GGAAGTAGCAAGGAAATTGA+TGG | + | chr3_3:82044170-82044189 | None:intergenic | 40.0% | |
| GATAAGGGAGATGAAGCTAT+AGG | + | chr3_3:82044292-82044311 | None:intergenic | 40.0% | |
| TTCATGTTGAAGGTCTGTGT+TGG | - | chr3_3:82044456-82044475 | Msa0477730:intron | 40.0% | |
| ! | TTTTCACATTCTGTGTCTGG+AGG | + | chr3_3:82044489-82044508 | None:intergenic | 40.0% |
| !!! | TGCAGGTTTTGACTAACACA+TGG | - | chr3_3:82044558-82044577 | Msa0477730:CDS | 40.0% |
| ATGTGTGAAAAAGTAGGGGA+CGG | + | chr3_3:82044770-82044789 | None:intergenic | 40.0% | |
| TTTGCATGATTCTCCGAAAC+AGG | + | chr3_3:82044942-82044961 | None:intergenic | 40.0% | |
| !! | TTAAGTGTTTCTGGTGACAG+TGG | + | chr3_3:82045008-82045027 | None:intergenic | 40.0% |
| TTGATGTGTGATGAACAGGA+TGG | - | chr3_3:82045029-82045048 | Msa0477730:intron | 40.0% | |
| TGATGTGTGATGAACAGGAT+GGG | - | chr3_3:82045030-82045049 | Msa0477730:intron | 40.0% | |
| ! | GAACAGGATGGGATGTTTTT+CGG | - | chr3_3:82045041-82045060 | Msa0477730:intron | 40.0% |
| !! | GATGGGATGTTTTTCGGTAA+TGG | - | chr3_3:82045047-82045066 | Msa0477730:five_prime_UTR | 40.0% |
| ! | TTCGGTAATGGTTCTGCAAA+TGG | - | chr3_3:82045059-82045078 | Msa0477730:five_prime_UTR | 40.0% |
| CAAAAGTCTTCCAACTCTGA+TGG | - | chr3_3:82045116-82045135 | Msa0477730:five_prime_UTR | 40.0% | |
| ATTCACCGCAACAAACTCTC+CGG | - | chr3_3:82041217-82041236 | Msa0477730:CDS | 45.0% | |
| GGTGTGACGAGAAAGATTGA+CGG | + | chr3_3:82041256-82041275 | None:intergenic | 45.0% | |
| GTCAATCTTTCTCGTCACAC+CGG | - | chr3_3:82041255-82041274 | Msa0477730:CDS | 45.0% | |
| ! | ATGGTTTGTGACAGTGACTG+CGG | + | chr3_3:82041646-82041665 | None:intergenic | 45.0% |
| ! | TGTGGTGGTGATTGTTTCCA+CGG | + | chr3_3:82041745-82041764 | None:intergenic | 45.0% |
| GATTGAAAATGCGGCATCAC+CGG | + | chr3_3:82041799-82041818 | None:intergenic | 45.0% | |
| GAATCAGCGAAACTAACTGC+GGG | + | chr3_3:82041828-82041847 | None:intergenic | 45.0% | |
| TTACCAAAGCTAAGCTCACG+GGG | + | chr3_3:82042064-82042083 | None:intergenic | 45.0% | |
| CTTACCAAAGCTAAGCTCAC+GGG | + | chr3_3:82042065-82042084 | None:intergenic | 45.0% | |
| CCTTACCAAAGCTAAGCTCA+CGG | + | chr3_3:82042066-82042085 | None:intergenic | 45.0% | |
| CCAACACCTTCACTTGTGTA+TGG | + | chr3_3:82042148-82042167 | None:intergenic | 45.0% | |
| ! | CCATACACAAGTGAAGGTGT+TGG | - | chr3_3:82042145-82042164 | Msa0477730:intron | 45.0% |
| TTAGGTCGAACAACATGACC+GGG | + | chr3_3:82042180-82042199 | None:intergenic | 45.0% | |
| GTTAGGTCGAACAACATGAC+CGG | + | chr3_3:82042181-82042200 | None:intergenic | 45.0% | |
| CATTCCAATTGCCTCCTTTC+GGG | + | chr3_3:82043361-82043380 | None:intergenic | 45.0% | |
| !! | TGCGGACTGCTTGCAATTTT+TGG | + | chr3_3:82043414-82043433 | None:intergenic | 45.0% |
| ! | ATTTTCAGAGCAGAGGACGT+TGG | + | chr3_3:82043703-82043722 | None:intergenic | 45.0% |
| ATATGGGTTCCAGAGATGGA+GGG | + | chr3_3:82043855-82043874 | None:intergenic | 45.0% | |
| TATATGGGTTCCAGAGATGG+AGG | + | chr3_3:82043856-82043875 | None:intergenic | 45.0% | |
| TACAATCGGATGTCAGAGCA+TGG | + | chr3_3:82044224-82044243 | None:intergenic | 45.0% | |
| AAGGAAGCTGACAGGGATAA+GGG | + | chr3_3:82044307-82044326 | None:intergenic | 45.0% | |
| AAAGGAAGCTGACAGGGATA+AGG | + | chr3_3:82044308-82044327 | None:intergenic | 45.0% | |
| GAAGCTGCAAAGACAAATGC+AGG | - | chr3_3:82044541-82044560 | Msa0477730:CDS | 45.0% | |
| TGTGTGAAAAAGTAGGGGAC+GGG | + | chr3_3:82044769-82044788 | None:intergenic | 45.0% | |
| AAATGAGAGGGAAAGCTGCT+AGG | - | chr3_3:82044838-82044857 | Msa0477730:CDS | 45.0% | |
| AGATGTTGCCAAGCCTGTTT+CGG | - | chr3_3:82044926-82044945 | Msa0477730:intron | 45.0% | |
| ATGATTCTCCGAAACAGGCT+TGG | + | chr3_3:82044937-82044956 | None:intergenic | 45.0% | |
| AGCAGTGTATCCATCAGAGT+TGG | + | chr3_3:82045129-82045148 | None:intergenic | 45.0% | |
| CTGTTTATGCAGAGCAGGAA+AGG | - | chr3_3:82045147-82045166 | Msa0477730:five_prime_UTR | 45.0% | |
| GCTTATCCTGACCAAGTTCA+GGG | - | chr3_3:82045169-82045188 | Msa0477730:five_prime_UTR | 45.0% | |
| ACCAAGTTCAGGGATGTTCT+TGG | - | chr3_3:82045179-82045198 | Msa0477730:five_prime_UTR | 45.0% | |
| ACCAAGAACATCCCTGAACT+TGG | + | chr3_3:82045183-82045202 | None:intergenic | 45.0% | |
| GTGACGAGAAAGATTGACGG+CGG | + | chr3_3:82041253-82041272 | None:intergenic | 50.0% | |
| TCGGAAATTTGCGCGGCAAT+TGG | - | chr3_3:82041567-82041586 | Msa0477730:CDS | 50.0% | |
| AAATGCATTTGCGCCTGAGG+AGG | + | chr3_3:82041697-82041716 | None:intergenic | 50.0% | |
| TCCTCAGGCGCAAATGCATT+TGG | - | chr3_3:82041696-82041715 | Msa0477730:intron | 50.0% | |
| TCCAAATGCATTTGCGCCTG+AGG | + | chr3_3:82041700-82041719 | None:intergenic | 50.0% | |
| GGAAACAATCACCACCACAG+TGG | - | chr3_3:82041746-82041765 | Msa0477730:intron | 50.0% | |
| ! | GGAAGCTTTGGTGTGGAGTA+CGG | + | chr3_3:82041859-82041878 | None:intergenic | 50.0% |
| GTACTCCACACCAAAGCTTC+CGG | - | chr3_3:82041858-82041877 | Msa0477730:intron | 50.0% | |
| AACCTCTTCACCGGAAGCTT+TGG | + | chr3_3:82041871-82041890 | None:intergenic | 50.0% | |
| AGCGCTTGAAACCTCTTCAC+CGG | + | chr3_3:82041880-82041899 | None:intergenic | 50.0% | |
| TCACGGGGACACTTGTGTAT+GGG | + | chr3_3:82042049-82042068 | None:intergenic | 50.0% | |
| !! | CCGTGAGCTTAGCTTTGGTA+AGG | - | chr3_3:82042063-82042082 | Msa0477730:CDS | 50.0% |
| TAGGTCGAACAACATGACCG+GGG | + | chr3_3:82042179-82042198 | None:intergenic | 50.0% | |
| !! | GGCATTTTGACGGTTGAGCT+AGG | - | chr3_3:82042207-82042226 | Msa0477730:intron | 50.0% |
| ! | CTCCATACGAAAAGCGTGTC+CGG | + | chr3_3:82042373-82042392 | None:intergenic | 50.0% |
| GAGCATCAGGGATGAAAGTC+TGG | - | chr3_3:82042630-82042649 | Msa0477730:CDS | 50.0% | |
| GCAATCTGAGCATCATTCCG+AGG | - | chr3_3:82042758-82042777 | Msa0477730:CDS | 50.0% | |
| GCTAGGAGACTCGTTTCTGA+AGG | + | chr3_3:82043058-82043077 | None:intergenic | 50.0% | |
| TACTGTGAGTGCTATGCAGC+TGG | - | chr3_3:82043276-82043295 | Msa0477730:CDS | 50.0% | |
| ACTGTGAGTGCTATGCAGCT+GGG | - | chr3_3:82043277-82043296 | Msa0477730:CDS | 50.0% | |
| GCAGCTGGGATCTATTGTGA+TGG | - | chr3_3:82043291-82043310 | Msa0477730:CDS | 50.0% | |
| GGAGGCAATTGGAATGACAC+TGG | - | chr3_3:82043365-82043384 | Msa0477730:intron | 50.0% | |
| GCTGCCATTAATGGAGCAGT+TGG | - | chr3_3:82043822-82043841 | Msa0477730:intron | 50.0% | |
| CATGACTGCTCAACACCAAC+AGG | - | chr3_3:82043941-82043960 | Msa0477730:intron | 50.0% | |
| GGGAACAAAGGAAGCTGACA+GGG | + | chr3_3:82044314-82044333 | None:intergenic | 50.0% | |
| ! | ATAGGCAGTGTCGGGAACAA+AGG | + | chr3_3:82044326-82044345 | None:intergenic | 50.0% |
| GCAGCTTTCCCTCTCATTTC+TGG | + | chr3_3:82044837-82044856 | None:intergenic | 50.0% | |
| ! | CACTGCTGTTTATGCAGAGC+AGG | - | chr3_3:82045142-82045161 | Msa0477730:five_prime_UTR | 50.0% |
| GGCTTATCCTGACCAAGTTC+AGG | - | chr3_3:82045168-82045187 | Msa0477730:five_prime_UTR | 50.0% | |
| GAACATCCCTGAACTTGGTC+AGG | + | chr3_3:82045178-82045197 | None:intergenic | 50.0% | |
| TGTTGCGGTGAATCCACCGT+GGG | + | chr3_3:82041210-82041229 | None:intergenic | 55.0% | |
| TTGTTGCGGTGAATCCACCG+TGG | + | chr3_3:82041211-82041230 | None:intergenic | 55.0% | |
| !! | GATCGCCGGAGAGTTTGTTG+CGG | + | chr3_3:82041225-82041244 | None:intergenic | 55.0% |
| GGCGACAATGTCAGGTACGA+CGG | + | chr3_3:82041616-82041635 | None:intergenic | 55.0% | |
| TGAAAATGCGGCATCACCGG+CGG | + | chr3_3:82041796-82041815 | None:intergenic | 55.0% | |
| GGGCGCGGTGATTGAAAATG+CGG | + | chr3_3:82041808-82041827 | None:intergenic | 55.0% | |
| ! | CTTCACCGGAAGCTTTGGTG+TGG | + | chr3_3:82041866-82041885 | None:intergenic | 55.0% |
| CACCAAAGCTTCCGGTGAAG+AGG | - | chr3_3:82041866-82041885 | Msa0477730:CDS | 55.0% | |
| CTCACGGGGACACTTGTGTA+TGG | + | chr3_3:82042050-82042069 | None:intergenic | 55.0% | |
| TGTCCCCGTGAGCTTAGCTT+TGG | - | chr3_3:82042058-82042077 | Msa0477730:CDS | 55.0% | |
| AAGGTCCGAGTTTCGAACCC+CGG | - | chr3_3:82042105-82042124 | Msa0477730:CDS | 55.0% | |
| !! | AGGTGTTGGTGTTCGAACCC+CGG | - | chr3_3:82042159-82042178 | Msa0477730:intron | 55.0% |
| ! | CACCGGACACGCTTTTCGTA+TGG | - | chr3_3:82042368-82042387 | Msa0477730:intron | 55.0% |
| ! | TGAGGCTGTGATCTAGGGCT+AGG | + | chr3_3:82043075-82043094 | None:intergenic | 55.0% |
| GAACAATGAGGCTGCCCGAA+AGG | - | chr3_3:82043344-82043363 | Msa0477730:intron | 55.0% | |
| CGGGAACAAAGGAAGCTGAC+AGG | + | chr3_3:82044315-82044334 | None:intergenic | 55.0% | |
| GCTAACCACTCCCACTCCCA+CGG | - | chr3_3:82041191-82041210 | Msa0477730:CDS | 60.0% | |
| GGTGAATCCACCGTGGGAGT+GGG | + | chr3_3:82041204-82041223 | None:intergenic | 60.0% | |
| GGAGAAGAGCGAAACGACGC+TGG | - | chr3_3:82041534-82041553 | Msa0477730:CDS | 60.0% | |
| TTGGATTTCGCCGCCGCATG+TGG | - | chr3_3:82041586-82041605 | Msa0477730:intron | 60.0% | |
| GTACGACGGACCTCCACATG+CGG | + | chr3_3:82041602-82041621 | None:intergenic | 60.0% | |
| TGTGACAGTGACTGCGGCGT+CGG | + | chr3_3:82041640-82041659 | None:intergenic | 60.0% | |
| ! | CGGTGTCGGAGGTCGTAGAA+TGG | + | chr3_3:82041665-82041684 | None:intergenic | 60.0% |
| TCTACGACCTCCGACACCGT+CGG | - | chr3_3:82041666-82041685 | Msa0477730:intron | 60.0% | |
| GGAGGCAAATCCGACGGTGT+CGG | + | chr3_3:82041679-82041698 | None:intergenic | 60.0% | |
| ACCGTCGGATTTGCCTCCTC+AGG | - | chr3_3:82041681-82041700 | Msa0477730:intron | 60.0% | |
| GCCTGAGGAGGCAAATCCGA+CGG | + | chr3_3:82041685-82041704 | None:intergenic | 60.0% | |
| TGTTTCCACGGCCGTCTCAC+TGG | + | chr3_3:82041733-82041752 | None:intergenic | 60.0% | |
| GTTCTCTGCTGCTGCCACTG+TGG | + | chr3_3:82041763-82041782 | None:intergenic | 60.0% | |
| GAGAACGTCACAGTCTCCGC+CGG | - | chr3_3:82041777-82041796 | Msa0477730:intron | 60.0% | |
| AGCGAAACTAACTGCGGGCG+CGG | + | chr3_3:82041823-82041842 | None:intergenic | 60.0% | |
| GGTGTCCGGGGTTCGAAACT+CGG | + | chr3_3:82042113-82042132 | None:intergenic | 60.0% | |
| GACGGTTGAGCTAGGACCTG+TGG | - | chr3_3:82042215-82042234 | Msa0477730:intron | 60.0% | |
| CAATGAGGCTGCCCGAAAGG+AGG | - | chr3_3:82043347-82043366 | Msa0477730:intron | 60.0% | |
| GCTGCCCGAAAGGAGGCAAT+TGG | - | chr3_3:82043354-82043373 | Msa0477730:intron | 60.0% | |
| CAGAGCAGAGGACGTTGGCA+TGG | + | chr3_3:82043698-82043717 | None:intergenic | 60.0% | |
| GGACTTGGACCCTCCATCTC+TGG | - | chr3_3:82043843-82043862 | Msa0477730:intron | 60.0% | |
| AACCACTCCCACTCCCACGG+TGG | - | chr3_3:82041194-82041213 | Msa0477730:CDS | 65.0% | |
| ATCCACCGTGGGAGTGGGAG+TGG | + | chr3_3:82041199-82041218 | None:intergenic | 65.0% | |
| CGGTGAATCCACCGTGGGAG+TGG | + | chr3_3:82041205-82041224 | None:intergenic | 65.0% | |
| TGACGGCGGAGAACGATCGC+CGG | + | chr3_3:82041239-82041258 | None:intergenic | 65.0% | |
| GATTTCGCCGCCGCATGTGG+AGG | - | chr3_3:82041589-82041608 | Msa0477730:intron | 65.0% | |
| ! | GCGTCGGTGGCGACAATGTC+AGG | + | chr3_3:82041624-82041643 | None:intergenic | 65.0% |
| ! | GGCAAATCCGACGGTGTCGG+AGG | + | chr3_3:82041676-82041695 | None:intergenic | 65.0% |
| AGTCACCAGTGAGACGGCCG+TGG | - | chr3_3:82041725-82041744 | Msa0477730:intron | 65.0% | |
| CTCTGCTGCTGCCACTGTGG+TGG | + | chr3_3:82041760-82041779 | None:intergenic | 65.0% | |
| CGACGGACCTCCACATGCGG+CGG | + | chr3_3:82041599-82041618 | None:intergenic | 70.0% | |
| ! | GACAGTGACTGCGGCGTCGG+TGG | + | chr3_3:82041637-82041656 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82041189 | 82045235 | 82041189 | ID=Msa0477730;Name=Msa0477730 |
| chr3_3 | mRNA | 82041189 | 82045235 | 82041189 | ID=Msa0477730-mRNA-1;Parent=Msa0477730;Name=Msa0477730-mRNA-1;_AED=0.22;_eAED=0.22;_QI=209|1|0.87|1|0.85|0.75|8|0|532 |
| chr3_3 | exon | 82041189 | 82041586 | 82041189 | ID=Msa0477730-mRNA-1:exon:22783;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82041862 | 82041956 | 82041862 | ID=Msa0477730-mRNA-1:exon:22782;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82042053 | 82042144 | 82042053 | ID=Msa0477730-mRNA-1:exon:22781;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82042462 | 82042818 | 82042462 | ID=Msa0477730-mRNA-1:exon:22780;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82042972 | 82043149 | 82042972 | ID=Msa0477730-mRNA-1:exon:22779;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82043252 | 82043362 | 82043252 | ID=Msa0477730-mRNA-1:exon:22778;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82044525 | 82044910 | 82044525 | ID=Msa0477730-mRNA-1:exon:22777;Parent=Msa0477730-mRNA-1 |
| chr3_3 | exon | 82045045 | 82045235 | 82045045 | ID=Msa0477730-mRNA-1:exon:22776;Parent=Msa0477730-mRNA-1 |
| chr3_3 | five_prime_UTR | 82045045 | 82045235 | 82045045 | ID=Msa0477730-mRNA-1:five_prime_utr;Parent=Msa0477730-mRNA-1 |
| chr3_3 | five_prime_UTR | 82044893 | 82044910 | 82044893 | ID=Msa0477730-mRNA-1:five_prime_utr;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82044525 | 82044892 | 82044525 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82043252 | 82043362 | 82043252 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82042972 | 82043149 | 82042972 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82042462 | 82042818 | 82042462 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82042053 | 82042144 | 82042053 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82041862 | 82041956 | 82041862 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| chr3_3 | CDS | 82041189 | 82041586 | 82041189 | ID=Msa0477730-mRNA-1:cds;Parent=Msa0477730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
