Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479350 | XP_013462189.1 | 96.939 | 294 | 7 | 1 | 1 | 292 | 1 | 294 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479350 | sp|Q9FXH7|SRS7_ARATH | 43.804 | 347 | 127 | 17 | 1 | 286 | 1 | 340 | 1.06e-69 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479350 | A0A072V2G0 | 96.939 | 294 | 7 | 1 | 1 | 292 | 1 | 294 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0479350 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479350 | MtrunA17_Chr3g0142171 | 96.939 | 294 | 7 | 1 | 1 | 292 | 1 | 294 | 0.0 | 593 |
| Msa0479350 | MtrunA17_Chr1g0155791 | 54.369 | 309 | 91 | 14 | 25 | 288 | 32 | 335 | 7.06e-71 | 222 |
| Msa0479350 | MtrunA17_Chr8g0372461 | 52.459 | 244 | 88 | 9 | 57 | 286 | 97 | 326 | 5.72e-63 | 201 |
| Msa0479350 | MtrunA17_Chr5g0404781 | 42.683 | 328 | 143 | 15 | 1 | 289 | 1 | 322 | 1.50e-59 | 192 |
| Msa0479350 | MtrunA17_Chr4g0035591 | 46.203 | 158 | 62 | 5 | 81 | 236 | 17 | 153 | 4.21e-38 | 133 |
| Msa0479350 | MtrunA17_Chr5g0441921 | 46.203 | 158 | 69 | 4 | 84 | 227 | 124 | 279 | 3.56e-31 | 119 |
| Msa0479350 | MtrunA17_Chr3g0082511 | 41.250 | 160 | 68 | 7 | 84 | 224 | 134 | 286 | 7.13e-28 | 109 |
| Msa0479350 | MtrunA17_Chr8g0353111 | 37.705 | 183 | 88 | 5 | 84 | 242 | 124 | 304 | 2.73e-27 | 108 |
| Msa0479350 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 81 | 118 | 147 | 184 | 1.07e-12 | 65.5 |
| Msa0479350 | MtrunA17_Chr0c01g0489181 | 57.895 | 38 | 16 | 0 | 81 | 118 | 64 | 101 | 3.14e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479350 | AT1G19790.2 | 43.804 | 347 | 127 | 17 | 1 | 286 | 1 | 340 | 1.08e-70 | 222 |
| Msa0479350 | AT1G19790.1 | 43.804 | 347 | 127 | 17 | 1 | 286 | 1 | 340 | 1.08e-70 | 222 |
| Msa0479350 | AT1G75520.1 | 42.017 | 357 | 124 | 16 | 1 | 288 | 1 | 343 | 1.51e-63 | 204 |
| Msa0479350 | AT5G66350.1 | 52.489 | 221 | 73 | 9 | 84 | 286 | 120 | 326 | 8.50e-58 | 188 |
| Msa0479350 | AT5G66350.3 | 51.852 | 216 | 73 | 8 | 84 | 281 | 120 | 322 | 2.83e-56 | 184 |
| Msa0479350 | AT5G66350.2 | 52.336 | 214 | 71 | 8 | 84 | 279 | 120 | 320 | 3.64e-56 | 184 |
| Msa0479350 | AT3G51060.1 | 50.877 | 228 | 85 | 10 | 82 | 286 | 142 | 365 | 6.94e-56 | 185 |
| Msa0479350 | AT2G18120.1 | 44.500 | 200 | 85 | 6 | 30 | 227 | 32 | 207 | 4.18e-44 | 150 |
| Msa0479350 | AT4G36260.1 | 47.514 | 181 | 39 | 5 | 78 | 225 | 88 | 245 | 3.48e-42 | 148 |
| Msa0479350 | AT2G18120.2 | 42.929 | 198 | 89 | 5 | 30 | 227 | 32 | 205 | 1.85e-41 | 143 |
| Msa0479350 | AT2G21400.2 | 39.535 | 215 | 95 | 8 | 75 | 285 | 1 | 184 | 7.83e-40 | 138 |
| Msa0479350 | AT2G21400.4 | 40.191 | 209 | 90 | 8 | 81 | 285 | 6 | 183 | 1.29e-39 | 137 |
| Msa0479350 | AT2G21400.3 | 48.667 | 150 | 51 | 4 | 75 | 224 | 1 | 124 | 2.20e-38 | 134 |
| Msa0479350 | AT2G21400.1 | 40.000 | 210 | 84 | 8 | 76 | 285 | 1 | 168 | 3.86e-38 | 133 |
| Msa0479350 | AT5G12330.1 | 44.375 | 160 | 68 | 4 | 84 | 224 | 112 | 269 | 1.52e-30 | 117 |
| Msa0479350 | AT5G12330.2 | 44.375 | 160 | 68 | 4 | 84 | 224 | 112 | 269 | 1.52e-30 | 117 |
| Msa0479350 | AT5G12330.4 | 45.000 | 160 | 67 | 5 | 84 | 224 | 199 | 356 | 3.23e-30 | 118 |
| Msa0479350 | AT5G33210.2 | 57.955 | 88 | 34 | 3 | 82 | 166 | 15 | 102 | 1.05e-25 | 98.6 |
| Msa0479350 | AT5G33210.1 | 58.621 | 87 | 33 | 3 | 82 | 165 | 50 | 136 | 4.99e-25 | 99.0 |
| Msa0479350 | AT3G54430.1 | 36.486 | 148 | 77 | 4 | 80 | 224 | 37 | 170 | 6.88e-22 | 90.9 |
| Msa0479350 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 9.70e-21 | 89.0 |
Find 74 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3_3:-84310048 | Msa0479350:CDS |
| CACGTATTAATTAGGATGTT+GGG | 0.319065 | 3_3:+84309882 | None:intergenic |
| AGCTCCGCTTAATGCTTTCA+TGG | 0.345186 | 3_3:-84309929 | Msa0479350:CDS |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3_3:+84310069 | None:intergenic |
| GACCAACACACGTATTAATT+AGG | 0.356284 | 3_3:+84309874 | None:intergenic |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3_3:-84311103 | Msa0479350:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3_3:+84310056 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3_3:-84311163 | Msa0479350:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3_3:-84310896 | Msa0479350:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3_3:+84310927 | None:intergenic |
| GTGGTAGGGATGGGTGGTTG+AGG | 0.413319 | 3_3:+84310818 | None:intergenic |
| CGTTCACGGCGTTTAGCAGC+TGG | 0.414213 | 3_3:+84310941 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3_3:-84310216 | Msa0479350:CDS |
| ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3_3:-84311198 | Msa0479350:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3_3:-84310246 | Msa0479350:intron |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3_3:-84310057 | Msa0479350:CDS |
| TGGTAGGGATGGGTGGTTGA+GGG | 0.435264 | 3_3:+84310819 | None:intergenic |
| GGGATGGGTGGTTGAGGGCA+AGG | 0.438435 | 3_3:+84310824 | None:intergenic |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3_3:-84310967 | Msa0479350:CDS |
| ACACGTATTAATTAGGATGT+TGG | 0.450226 | 3_3:+84309881 | None:intergenic |
| TACGCGCATTGCTCATGATC+TGG | 0.452659 | 3_3:+84310153 | None:intergenic |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3_3:-84310247 | Msa0479350:intron |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3_3:-84310096 | Msa0479350:CDS |
| GTTCTCCAGGAGTAACGTTT+CGG | 0.464963 | 3_3:-84310203 | Msa0479350:CDS |
| TGGTTGAGGGCAAGGAAGAG+AGG | 0.470671 | 3_3:+84310832 | None:intergenic |
| CTTAATGCTTTCATGGCAGC+TGG | 0.471683 | 3_3:-84309922 | Msa0479350:CDS |
| TGAGCAATGCGCGTATCAAA+CGG | 0.474401 | 3_3:-84310145 | Msa0479350:CDS |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3_3:+84310045 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3_3:-84311157 | Msa0479350:CDS |
| AGTAAAGTGAAGGGTCGAAA+TGG | 0.489246 | 3_3:+84309953 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3_3:+84310896 | None:intergenic |
| AATAATTATATACCTGTGGT+AGG | 0.506589 | 3_3:+84310803 | None:intergenic |
| ACACACCGAAACGTTACTCC+TGG | 0.517806 | 3_3:+84310198 | None:intergenic |
| AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3_3:-84311210 | Msa0479350:CDS |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3_3:-84310045 | Msa0479350:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3_3:-84310132 | Msa0479350:CDS |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3_3:-84311068 | Msa0479350:CDS |
| TTATATACCTGTGGTAGGGA+TGG | 0.531535 | 3_3:+84310808 | None:intergenic |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3_3:-84311093 | Msa0479350:CDS |
| GAACTTGTTGTAAGAGTCGA+GGG | 0.537704 | 3_3:-84311000 | Msa0479350:CDS |
| ACGTATTAATTAGGATGTTG+GGG | 0.540164 | 3_3:+84309883 | None:intergenic |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3_3:-84310042 | Msa0479350:CDS |
| ATACCTGTGGTAGGGATGGG+TGG | 0.544823 | 3_3:+84310812 | None:intergenic |
| CGACACACAGAAATTAATCA+AGG | 0.547183 | 3_3:-84310860 | Msa0479350:CDS |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3_3:+84310216 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3_3:-84310181 | Msa0479350:CDS |
| TATATACCTGTGGTAGGGAT+GGG | 0.567730 | 3_3:+84310809 | None:intergenic |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3_3:-84310129 | Msa0479350:CDS |
| ATAATTATATACCTGTGGTA+GGG | 0.570372 | 3_3:+84310804 | None:intergenic |
| ACTCCTGGAGAACTCACCTC+TGG | 0.575897 | 3_3:+84310213 | None:intergenic |
| AGCGGAGCTGAGTAAAGTGA+AGG | 0.586546 | 3_3:+84309943 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3_3:-84311158 | Msa0479350:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3_3:-84311085 | Msa0479350:CDS |
| TGAGTACTGCAACAAATGGA+TGG | 0.592588 | 3_3:-84311316 | None:intergenic |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3_3:+84310072 | None:intergenic |
| CAACCACCCATCCCTACCAC+AGG | 0.593236 | 3_3:-84310815 | Msa0479350:intron |
| GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3_3:-84311211 | Msa0479350:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3_3:-84311230 | Msa0479350:CDS |
| AGAACTTGTTGTAAGAGTCG+AGG | 0.607559 | 3_3:-84311001 | Msa0479350:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3_3:+84310009 | None:intergenic |
| AGGGTCGAAATGGATACCGC+TGG | 0.616747 | 3_3:+84309963 | None:intergenic |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3_3:+84311175 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3_3:+84310217 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3_3:-84311082 | Msa0479350:CDS |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3_3:-84310966 | Msa0479350:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3_3:-84310128 | Msa0479350:CDS |
| GCGGAGCTGAGTAAAGTGAA+GGG | 0.659711 | 3_3:+84309944 | None:intergenic |
| GCTGCCATGAAAGCATTAAG+CGG | 0.661845 | 3_3:+84309925 | None:intergenic |
| GAGTACTGCAACAAATGGAT+GGG | 0.667849 | 3_3:-84311315 | None:intergenic |
| GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3_3:-84309979 | Msa0479350:CDS |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3_3:-84310229 | Msa0479350:CDS |
| CGTATTAATTAGGATGTTGG+GGG | 0.679578 | 3_3:+84309884 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3_3:-84310177 | Msa0479350:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3_3:-84311061 | Msa0479350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTATAAAAAAACAAAAA+TGG | + | chr3_3:84310842-84310861 | None:intergenic | 10.0% |
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_3:84310848-84310867 | Msa0479350:CDS | 10.0% |
| !! | TAACTATAAAAAAACAAAAA+TGG | + | chr3_3:84310842-84310861 | None:intergenic | 10.0% |
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_3:84310848-84310867 | Msa0479350:CDS | 10.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3_3:84310393-84310412 | None:intergenic | 20.0% |
| !! | ACATACATACATACATATAT+AGG | - | chr3_3:84310446-84310465 | Msa0479350:intron | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3_3:84310548-84310567 | Msa0479350:intron | 20.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3_3:84310393-84310412 | None:intergenic | 20.0% |
| !! | ACATACATACATACATATAT+AGG | - | chr3_3:84310446-84310465 | Msa0479350:intron | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3_3:84310548-84310567 | Msa0479350:intron | 20.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_3:84309959-84309978 | Msa0479350:CDS | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_3:84310096-84310115 | Msa0479350:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3_3:84310388-84310407 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3_3:84310389-84310408 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3_3:84310667-84310686 | None:intergenic | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3_3:84310673-84310692 | Msa0479350:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_3:84310783-84310802 | None:intergenic | 25.0% |
| !!! | ACTGTTTTTAAGTAAAACTG+AGG | - | chr3_3:84310785-84310804 | Msa0479350:intron | 25.0% |
| ! | TTAAGTAAAACTGAGGAAAT+TGG | - | chr3_3:84310792-84310811 | Msa0479350:intron | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3_3:84310863-84310882 | Msa0479350:CDS | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_3:84309959-84309978 | Msa0479350:CDS | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_3:84310096-84310115 | Msa0479350:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3_3:84310388-84310407 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3_3:84310389-84310408 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3_3:84310667-84310686 | None:intergenic | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3_3:84310673-84310692 | Msa0479350:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_3:84310783-84310802 | None:intergenic | 25.0% |
| !!! | ACTGTTTTTAAGTAAAACTG+AGG | - | chr3_3:84310785-84310804 | Msa0479350:intron | 25.0% |
| ! | TTAAGTAAAACTGAGGAAAT+TGG | - | chr3_3:84310792-84310811 | Msa0479350:intron | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3_3:84310863-84310882 | Msa0479350:CDS | 25.0% |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_3:84309896-84309915 | Msa0479350:CDS | 30.0% |
| AGGAGATCTATAACAACAAA+GGG | - | chr3_3:84309979-84309998 | Msa0479350:CDS | 30.0% | |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_3:84310017-84310036 | None:intergenic | 30.0% |
| TTGAACATTTACAATGCGTT+TGG | - | chr3_3:84310026-84310045 | Msa0479350:CDS | 30.0% | |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3_3:84310222-84310241 | Msa0479350:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3_3:84310223-84310242 | Msa0479350:CDS | 30.0% |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3_3:84310435-84310454 | None:intergenic | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3_3:84310575-84310594 | None:intergenic | 30.0% | |
| AAAACAGTAGCAAGTTATGA+TGG | + | chr3_3:84310729-84310748 | None:intergenic | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_3:84310776-84310795 | None:intergenic | 30.0% |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_3:84310931-84310950 | Msa0479350:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_3:84310932-84310951 | Msa0479350:CDS | 30.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3_3:84311093-84311112 | Msa0479350:CDS | 30.0% | |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_3:84309896-84309915 | Msa0479350:CDS | 30.0% |
| AGGAGATCTATAACAACAAA+GGG | - | chr3_3:84309979-84309998 | Msa0479350:CDS | 30.0% | |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_3:84310017-84310036 | None:intergenic | 30.0% |
| TTGAACATTTACAATGCGTT+TGG | - | chr3_3:84310026-84310045 | Msa0479350:CDS | 30.0% | |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3_3:84310222-84310241 | Msa0479350:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3_3:84310223-84310242 | Msa0479350:CDS | 30.0% |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3_3:84310435-84310454 | None:intergenic | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3_3:84310575-84310594 | None:intergenic | 30.0% | |
| AAAACAGTAGCAAGTTATGA+TGG | + | chr3_3:84310729-84310748 | None:intergenic | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_3:84310776-84310795 | None:intergenic | 30.0% |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_3:84310931-84310950 | Msa0479350:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_3:84310932-84310951 | Msa0479350:CDS | 30.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3_3:84311093-84311112 | Msa0479350:CDS | 30.0% | |
| !!! | ATGGATGGGTTATTTTGTCT+AGG | - | chr3_3:84309888-84309907 | Msa0479350:CDS | 35.0% |
| GAGGAGATCTATAACAACAA+AGG | - | chr3_3:84309978-84309997 | Msa0479350:CDS | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3_3:84309991-84310010 | Msa0479350:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3_3:84310086-84310105 | Msa0479350:CDS | 35.0% | |
| CGACACACAGAAATTAATCA+AGG | - | chr3_3:84310329-84310348 | Msa0479350:intron | 35.0% | |
| GTATGTATGTATAGCTAGCT+AGG | + | chr3_3:84310436-84310455 | None:intergenic | 35.0% | |
| GTTAAGGTCTAGTCATATAG+AGG | + | chr3_3:84310651-84310670 | None:intergenic | 35.0% | |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3_3:84310758-84310777 | None:intergenic | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3_3:84311120-84311139 | None:intergenic | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3_3:84311123-84311142 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_3:84311183-84311202 | None:intergenic | 35.0% |
| !!! | ATGGATGGGTTATTTTGTCT+AGG | - | chr3_3:84309888-84309907 | Msa0479350:CDS | 35.0% |
| GAGGAGATCTATAACAACAA+AGG | - | chr3_3:84309978-84309997 | Msa0479350:CDS | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3_3:84309991-84310010 | Msa0479350:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3_3:84310086-84310105 | Msa0479350:CDS | 35.0% | |
| CGACACACAGAAATTAATCA+AGG | - | chr3_3:84310329-84310348 | Msa0479350:intron | 35.0% | |
| GTATGTATGTATAGCTAGCT+AGG | + | chr3_3:84310436-84310455 | None:intergenic | 35.0% | |
| GTTAAGGTCTAGTCATATAG+AGG | + | chr3_3:84310651-84310670 | None:intergenic | 35.0% | |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3_3:84310758-84310777 | None:intergenic | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3_3:84311120-84311139 | None:intergenic | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3_3:84311123-84311142 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_3:84311183-84311202 | None:intergenic | 35.0% |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3_3:84310031-84310050 | Msa0479350:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_3:84310032-84310051 | Msa0479350:CDS | 40.0% |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3_3:84310104-84310123 | Msa0479350:CDS | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3_3:84310121-84310140 | Msa0479350:CDS | 40.0% | |
| !! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3_3:84310188-84310207 | Msa0479350:CDS | 40.0% |
| !! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3_3:84310189-84310208 | Msa0479350:CDS | 40.0% |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_3:84310265-84310284 | None:intergenic | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3_3:84310383-84310402 | None:intergenic | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3_3:84310384-84310403 | None:intergenic | 40.0% | |
| TTGAATATGGAACCCCACTT+TGG | - | chr3_3:84310686-84310705 | Msa0479350:intron | 40.0% | |
| !! | CAAGTTATGATGGATGACCA+TGG | + | chr3_3:84310719-84310738 | None:intergenic | 40.0% |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3_3:84310759-84310778 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3_3:84311057-84311076 | Msa0479350:CDS | 40.0% | |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_3:84311075-84311094 | Msa0479350:CDS | 40.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3_3:84311132-84311151 | Msa0479350:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3_3:84311136-84311155 | None:intergenic | 40.0% | |
| AGTAAAGTGAAGGGTCGAAA+TGG | + | chr3_3:84311239-84311258 | None:intergenic | 40.0% | |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3_3:84310031-84310050 | Msa0479350:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_3:84310032-84310051 | Msa0479350:CDS | 40.0% |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3_3:84310104-84310123 | Msa0479350:CDS | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3_3:84310121-84310140 | Msa0479350:CDS | 40.0% | |
| !! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3_3:84310188-84310207 | Msa0479350:CDS | 40.0% |
| !! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3_3:84310189-84310208 | Msa0479350:CDS | 40.0% |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_3:84310265-84310284 | None:intergenic | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3_3:84310383-84310402 | None:intergenic | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3_3:84310384-84310403 | None:intergenic | 40.0% | |
| TTGAATATGGAACCCCACTT+TGG | - | chr3_3:84310686-84310705 | Msa0479350:intron | 40.0% | |
| !! | CAAGTTATGATGGATGACCA+TGG | + | chr3_3:84310719-84310738 | None:intergenic | 40.0% |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3_3:84310759-84310778 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3_3:84311057-84311076 | Msa0479350:CDS | 40.0% | |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_3:84311075-84311094 | Msa0479350:CDS | 40.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3_3:84311132-84311151 | Msa0479350:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3_3:84311136-84311155 | None:intergenic | 40.0% | |
| AGTAAAGTGAAGGGTCGAAA+TGG | + | chr3_3:84311239-84311258 | None:intergenic | 40.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3_3:84310128-84310147 | Msa0479350:CDS | 45.0% | |
| TATGGAACCCCACTTTGGAT+TGG | - | chr3_3:84310691-84310710 | Msa0479350:intron | 45.0% | |
| CATGGATCCAATCCAAAGTG+GGG | + | chr3_3:84310701-84310720 | None:intergenic | 45.0% | |
| CCATGGATCCAATCCAAAGT+GGG | + | chr3_3:84310702-84310721 | None:intergenic | 45.0% | |
| ACCATGGATCCAATCCAAAG+TGG | + | chr3_3:84310703-84310722 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_3:84310936-84310955 | Msa0479350:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_3:84310943-84310962 | Msa0479350:CDS | 45.0% |
| GTTCTCCAGGAGTAACGTTT+CGG | - | chr3_3:84310986-84311005 | Msa0479350:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_3:84311008-84311027 | Msa0479350:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_3:84311012-84311031 | Msa0479350:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | chr3_3:84311044-84311063 | Msa0479350:CDS | 45.0% | |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3_3:84311061-84311080 | Msa0479350:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3_3:84311141-84311160 | Msa0479350:CDS | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3_3:84311147-84311166 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_3:84311144-84311163 | Msa0479350:CDS | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_3:84311147-84311166 | Msa0479350:CDS | 45.0% | |
| AGCTCCGCTTAATGCTTTCA+TGG | - | chr3_3:84311260-84311279 | Msa0479350:CDS | 45.0% | |
| !! | GCTGCCATGAAAGCATTAAG+CGG | + | chr3_3:84311267-84311286 | None:intergenic | 45.0% |
| CTTAATGCTTTCATGGCAGC+TGG | - | chr3_3:84311267-84311286 | Msa0479350:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3_3:84310128-84310147 | Msa0479350:CDS | 45.0% | |
| TATGGAACCCCACTTTGGAT+TGG | - | chr3_3:84310691-84310710 | Msa0479350:intron | 45.0% | |
| CATGGATCCAATCCAAAGTG+GGG | + | chr3_3:84310701-84310720 | None:intergenic | 45.0% | |
| CCATGGATCCAATCCAAAGT+GGG | + | chr3_3:84310702-84310721 | None:intergenic | 45.0% | |
| ACCATGGATCCAATCCAAAG+TGG | + | chr3_3:84310703-84310722 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_3:84310936-84310955 | Msa0479350:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_3:84310943-84310962 | Msa0479350:CDS | 45.0% |
| GTTCTCCAGGAGTAACGTTT+CGG | - | chr3_3:84310986-84311005 | Msa0479350:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_3:84311008-84311027 | Msa0479350:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_3:84311012-84311031 | Msa0479350:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | chr3_3:84311044-84311063 | Msa0479350:CDS | 45.0% | |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3_3:84311061-84311080 | Msa0479350:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3_3:84311141-84311160 | Msa0479350:CDS | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3_3:84311147-84311166 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_3:84311144-84311163 | Msa0479350:CDS | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_3:84311147-84311166 | Msa0479350:CDS | 45.0% | |
| AGCTCCGCTTAATGCTTTCA+TGG | - | chr3_3:84311260-84311279 | Msa0479350:CDS | 45.0% | |
| !! | GCTGCCATGAAAGCATTAAG+CGG | + | chr3_3:84311267-84311286 | None:intergenic | 45.0% |
| CTTAATGCTTTCATGGCAGC+TGG | - | chr3_3:84311267-84311286 | Msa0479350:CDS | 45.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3_3:84310107-84310126 | Msa0479350:CDS | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3_3:84310296-84310315 | None:intergenic | 50.0% | |
| ! | CCCACTTTGGATTGGATCCA+TGG | - | chr3_3:84310699-84310718 | Msa0479350:intron | 50.0% |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_3:84310942-84310961 | Msa0479350:CDS | 50.0% |
| ACACACCGAAACGTTACTCC+TGG | + | chr3_3:84310994-84311013 | None:intergenic | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | chr3_3:84311039-84311058 | None:intergenic | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3_3:84311060-84311079 | Msa0479350:CDS | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | chr3_3:84311210-84311229 | Msa0479350:CDS | 50.0% | |
| GCGGAGCTGAGTAAAGTGAA+GGG | + | chr3_3:84311248-84311267 | None:intergenic | 50.0% | |
| AGCGGAGCTGAGTAAAGTGA+AGG | + | chr3_3:84311249-84311268 | None:intergenic | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3_3:84310107-84310126 | Msa0479350:CDS | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3_3:84310296-84310315 | None:intergenic | 50.0% | |
| ! | CCCACTTTGGATTGGATCCA+TGG | - | chr3_3:84310699-84310718 | Msa0479350:intron | 50.0% |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_3:84310942-84310961 | Msa0479350:CDS | 50.0% |
| ACACACCGAAACGTTACTCC+TGG | + | chr3_3:84310994-84311013 | None:intergenic | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | chr3_3:84311039-84311058 | None:intergenic | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3_3:84311060-84311079 | Msa0479350:CDS | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | chr3_3:84311210-84311229 | Msa0479350:CDS | 50.0% | |
| GCGGAGCTGAGTAAAGTGAA+GGG | + | chr3_3:84311248-84311267 | None:intergenic | 50.0% | |
| AGCGGAGCTGAGTAAAGTGA+AGG | + | chr3_3:84311249-84311268 | None:intergenic | 50.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_3:84310293-84310312 | Msa0479350:intron | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_3:84310360-84310379 | None:intergenic | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_3:84310373-84310392 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3_3:84310380-84310399 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3_3:84310960-84310979 | Msa0479350:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3_3:84310975-84310994 | None:intergenic | 55.0% | |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3_3:84310979-84310998 | None:intergenic | 55.0% | |
| AGGGTCGAAATGGATACCGC+TGG | + | chr3_3:84311229-84311248 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_3:84310293-84310312 | Msa0479350:intron | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_3:84310360-84310379 | None:intergenic | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_3:84310373-84310392 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3_3:84310380-84310399 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3_3:84310960-84310979 | Msa0479350:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3_3:84310975-84310994 | None:intergenic | 55.0% | |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3_3:84310979-84310998 | None:intergenic | 55.0% | |
| AGGGTCGAAATGGATACCGC+TGG | + | chr3_3:84311229-84311248 | None:intergenic | 55.0% | |
| CGTTCACGGCGTTTAGCAGC+TGG | + | chr3_3:84310251-84310270 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_3:84310374-84310393 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3_3:84310374-84310393 | Msa0479350:intron | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3_3:84310976-84310995 | None:intergenic | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_3:84310973-84310992 | Msa0479350:CDS | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+TGG | + | chr3_3:84310251-84310270 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_3:84310374-84310393 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3_3:84310374-84310393 | Msa0479350:intron | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3_3:84310976-84310995 | None:intergenic | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_3:84310973-84310992 | Msa0479350:CDS | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_3:84310368-84310387 | None:intergenic | 65.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_3:84310368-84310387 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84309888 | 84311323 | 84309888 | ID=Msa0479350;Name=Msa0479350 |
| chr3_3 | mRNA | 84309888 | 84311323 | 84309888 | ID=Msa0479350-mRNA-1;Parent=Msa0479350;Name=Msa0479350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|292 |
| chr3_3 | exon | 84310816 | 84311323 | 84310816 | ID=Msa0479350-mRNA-1:exon:23919;Parent=Msa0479350-mRNA-1 |
| chr3_3 | exon | 84309888 | 84310258 | 84309888 | ID=Msa0479350-mRNA-1:exon:23918;Parent=Msa0479350-mRNA-1 |
| chr3_3 | CDS | 84310816 | 84311323 | 84310816 | ID=Msa0479350-mRNA-1:cds;Parent=Msa0479350-mRNA-1 |
| chr3_3 | CDS | 84309888 | 84310258 | 84309888 | ID=Msa0479350-mRNA-1:cds;Parent=Msa0479350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
