Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479830 | XP_003603883.2 | 82.339 | 436 | 10 | 5 | 1 | 433 | 1 | 372 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479830 | sp|Q0WNR6|ARID5_ARATH | 62.192 | 365 | 75 | 7 | 67 | 430 | 132 | 434 | 8.97e-141 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479830 | G7J6H5 | 82.339 | 436 | 10 | 5 | 1 | 433 | 1 | 372 | 0.0 | 668 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0479830 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479830 | MtrunA17_Chr3g0144341 | 82.339 | 436 | 10 | 5 | 1 | 433 | 1 | 372 | 0.0 | 668 |
| Msa0479830 | MtrunA17_Chr5g0407561 | 50.461 | 434 | 125 | 9 | 24 | 430 | 232 | 602 | 4.72e-129 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479830 | AT1G76510.2 | 62.192 | 365 | 75 | 7 | 67 | 430 | 132 | 434 | 9.12e-142 | 412 |
| Msa0479830 | AT1G76510.4 | 62.192 | 365 | 75 | 7 | 67 | 430 | 132 | 434 | 9.12e-142 | 412 |
| Msa0479830 | AT1G76510.1 | 62.192 | 365 | 75 | 7 | 67 | 430 | 132 | 434 | 9.12e-142 | 412 |
| Msa0479830 | AT1G76510.3 | 58.247 | 388 | 76 | 8 | 67 | 430 | 132 | 457 | 1.68e-134 | 396 |
| Msa0479830 | AT1G20910.1 | 57.143 | 364 | 95 | 5 | 67 | 430 | 96 | 398 | 1.74e-127 | 374 |
| Msa0479830 | AT2G17410.1 | 54.722 | 360 | 98 | 5 | 72 | 430 | 489 | 784 | 2.16e-116 | 358 |
| Msa0479830 | AT2G17410.3 | 54.722 | 360 | 98 | 5 | 72 | 430 | 489 | 784 | 2.16e-116 | 358 |
| Msa0479830 | AT2G17410.2 | 54.318 | 359 | 95 | 5 | 72 | 430 | 489 | 778 | 2.27e-115 | 355 |
| Msa0479830 | AT1G20910.2 | 55.389 | 334 | 88 | 5 | 67 | 400 | 96 | 368 | 1.69e-107 | 323 |
Find 132 sgRNAs with CRISPR-Local
Find 441 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTCAGAATGGATAAT+TGG | 0.172616 | 3_3:+84991863 | None:intergenic |
| GAAGTATATGCTCTAGTTCC+TGG | 0.233784 | 3_3:-84987288 | Msa0479830:CDS |
| TTGGCATGCTCAGCGCCTTA+TGG | 0.294765 | 3_3:-84988645 | Msa0479830:CDS |
| GAAAAGCATAAGAGAGAGAT+TGG | 0.315271 | 3_3:-84989663 | Msa0479830:CDS |
| TTTGTAGACCGCTGTTTATC+AGG | 0.316112 | 3_3:-84988720 | Msa0479830:intron |
| CAATGGGACTTGATAAAACT+TGG | 0.325300 | 3_3:+84991185 | None:intergenic |
| GTCCTTGGAGACTGCTCTTA+AGG | 0.330004 | 3_3:-84987985 | Msa0479830:CDS |
| GTTGGACGACTTGTTATAAC+TGG | 0.347669 | 3_3:-84986457 | Msa0479830:CDS |
| TCTGTAACGTTCTTAACTTT+AGG | 0.348861 | 3_3:+84991422 | None:intergenic |
| ACGTTCTTAACTTTAGGTTT+TGG | 0.366210 | 3_3:+84991428 | None:intergenic |
| GCATATTGCACCAGTGCATT+TGG | 0.369109 | 3_3:+84985904 | None:intergenic |
| TGGCATGCTCAGCGCCTTAT+GGG | 0.389962 | 3_3:-84988644 | Msa0479830:CDS |
| ACACAGAGCAAATGTGGATT+GGG | 0.393147 | 3_3:-84987917 | Msa0479830:CDS |
| TTTCCTCCCCGGAAAATGAT+TGG | 0.394311 | 3_3:-84986069 | Msa0479830:three_prime_UTR |
| TGTGTGACGAATTGTTTGTT+TGG | 0.394982 | 3_3:+84991908 | None:intergenic |
| TTTCCACACTCGATGGTTGA+TGG | 0.396113 | 3_3:+84989613 | None:intergenic |
| GAGACAGGCAGTTAAGTTAC+TGG | 0.400210 | 3_3:-84988296 | Msa0479830:intron |
| AGGTAGGGCGCGGAGGGATG+CGG | 0.401043 | 3_3:-84988687 | Msa0479830:CDS |
| ATCAATGGAGGGTCATGAAA+TGG | 0.404745 | 3_3:-84991579 | Msa0479830:exon |
| AACTAACAACAGCAGATGTT+TGG | 0.411334 | 3_3:+84986144 | None:intergenic |
| GGTTCCTGAGTCAGCTGTTA+AGG | 0.416729 | 3_3:-84988612 | Msa0479830:intron |
| ATGCTCGAGCTCTTTCATAA+AGG | 0.418085 | 3_3:+84991242 | None:intergenic |
| CCATATGTTATTCAGGTCCT+TGG | 0.421166 | 3_3:-84988000 | Msa0479830:intron |
| CTCCGCGCCCTACCTGAGCC+TGG | 0.423147 | 3_3:+84988695 | None:intergenic |
| CAGAAAATGCTGACAATCCA+TGG | 0.427370 | 3_3:-84986429 | Msa0479830:CDS |
| GTTTATCAGGCTCCAGGCTC+AGG | 0.427487 | 3_3:-84988707 | Msa0479830:CDS |
| AAAACTCAGAATGGATAATT+GGG | 0.438599 | 3_3:+84991864 | None:intergenic |
| GTATTGATTCACAAAATAGT+AGG | 0.440988 | 3_3:+84987938 | None:intergenic |
| AAAAGCATAAGAGAGAGATT+GGG | 0.443286 | 3_3:-84989662 | Msa0479830:CDS |
| TTGATCTTCACCCAATCAGC+TGG | 0.444221 | 3_3:+84987459 | None:intergenic |
| GACAGAGCTGCAAACATAGA+AGG | 0.444672 | 3_3:-84988318 | Msa0479830:CDS |
| GTTATAACAAGTCGTCCAAC+TGG | 0.451498 | 3_3:+84986460 | None:intergenic |
| GTGTGACGAATTGTTTGTTT+GGG | 0.458908 | 3_3:+84991909 | None:intergenic |
| TGATGAAGCCGGTACGCCTA+TGG | 0.462210 | 3_3:-84991274 | Msa0479830:CDS |
| AGGCTCAGGTAGGGCGCGGA+GGG | 0.464479 | 3_3:-84988693 | Msa0479830:CDS |
| AAATAGTAGGGGAGGAAAGA+TGG | 0.465664 | 3_3:+84987951 | None:intergenic |
| CTGCACGTGCAATGCAAGGT+TGG | 0.470880 | 3_3:-84988664 | Msa0479830:CDS |
| GTTTCTCGCATATTCTCAAA+AGG | 0.473365 | 3_3:-84986047 | Msa0479830:three_prime_UTR |
| TACACAGAGCAAATGTGGAT+TGG | 0.474523 | 3_3:-84987918 | Msa0479830:CDS |
| TTTCTACAGATCGAGGTCCT+TGG | 0.482284 | 3_3:-84991220 | Msa0479830:CDS |
| AAGTATATGCTCTAGTTCCT+GGG | 0.483026 | 3_3:-84987287 | Msa0479830:CDS |
| TGTACGCGTTCCTTTCGAGC+AGG | 0.485574 | 3_3:-84986105 | Msa0479830:CDS |
| CTCCAGGCTCAGGTAGGGCG+CGG | 0.493114 | 3_3:-84988697 | Msa0479830:CDS |
| ACATACTTGAGGCAATTCAA+TGG | 0.496631 | 3_3:+84991168 | None:intergenic |
| GAACCTCGCCGTATCCCATA+AGG | 0.497226 | 3_3:+84988630 | None:intergenic |
| ACAAAGAACACCGTCTGGTA+TGG | 0.499407 | 3_3:-84988343 | Msa0479830:CDS |
| ATAAAGGCTTCTCGCTCCAT+AGG | 0.502198 | 3_3:+84991258 | None:intergenic |
| CAGGCTCAGGTAGGGCGCGG+AGG | 0.503793 | 3_3:-84988694 | Msa0479830:CDS |
| GAAGATCAATGTGCGGGAAA+CGG | 0.506451 | 3_3:-84987445 | Msa0479830:intron |
| TTGTTCAAGTTGAGGAGTGA+GGG | 0.508455 | 3_3:+84991463 | None:intergenic |
| ACCGCTGTTTATCAGGCTCC+AGG | 0.511245 | 3_3:-84988713 | Msa0479830:CDS |
| AAAGCATAAGAGAGAGATTG+GGG | 0.512312 | 3_3:-84989661 | Msa0479830:CDS |
| AAGAGTGAGCCGTGGAGAGG+TGG | 0.512363 | 3_3:-84991974 | Msa0479830:five_prime_UTR |
| AACAAACAAAGAACACCGTC+TGG | 0.512461 | 3_3:-84988348 | Msa0479830:CDS |
| TATTGATTCACAAAATAGTA+GGG | 0.515006 | 3_3:+84987939 | None:intergenic |
| GAAGTCAATAATAACAATGC+TGG | 0.518567 | 3_3:-84991401 | Msa0479830:CDS |
| GATTCAATGAAAACTCAGAA+TGG | 0.527879 | 3_3:+84991855 | None:intergenic |
| TCTGCTGTTGTTAGTTTGCA+TGG | 0.528508 | 3_3:-84986137 | Msa0479830:CDS |
| CATACTTGAGGCAATTCAAT+GGG | 0.529182 | 3_3:+84991169 | None:intergenic |
| TGATCTTCACCCAATCAGCT+GGG | 0.529764 | 3_3:+84987460 | None:intergenic |
| AGGAACTAGTCTAGCCCTGT+TGG | 0.531582 | 3_3:-84985986 | Msa0479830:three_prime_UTR |
| ACCTCTTCACGAAGGAGCCC+AGG | 0.532624 | 3_3:+84987270 | None:intergenic |
| CTGCAAACATAGAAGGAGAC+AGG | 0.533192 | 3_3:-84988311 | Msa0479830:CDS |
| TGTTGTTGTTGTTCAAGTTG+AGG | 0.536049 | 3_3:+84991455 | None:intergenic |
| CTTACTCAGACAGAAATCAA+TGG | 0.545998 | 3_3:-84991594 | Msa0479830:intron |
| TTCTCGCTCCATAGGCGTAC+CGG | 0.546405 | 3_3:+84991266 | None:intergenic |
| ATCAATACACAGAGCAAATG+TGG | 0.550737 | 3_3:-84987923 | Msa0479830:CDS |
| CACACAGCTCCCTGCTCGAA+AGG | 0.552889 | 3_3:+84986095 | None:intergenic |
| TCGAAGTTGTGGCGGTCAGT+AGG | 0.553786 | 3_3:-84990321 | Msa0479830:CDS |
| GTCGTCCAACTGGATCGGAT+TGG | 0.556323 | 3_3:+84986470 | None:intergenic |
| ATAACAAAGGATAAAGATAA+CGG | 0.556940 | 3_3:+84987234 | None:intergenic |
| GCGGCTGCACGTGCAATGCA+AGG | 0.557817 | 3_3:-84988668 | Msa0479830:CDS |
| ATCAATGATTTATTCTCTCT+AGG | 0.558415 | 3_3:-84985934 | Msa0479830:three_prime_UTR |
| GCTCAGCGCCTTATGGGATA+CGG | 0.558831 | 3_3:-84988638 | Msa0479830:CDS |
| GGACTTGCACTACAGTCTCA+TGG | 0.558888 | 3_3:-84990047 | Msa0479830:CDS |
| AACAAGTCGTCCAACTGGAT+CGG | 0.560628 | 3_3:+84986465 | None:intergenic |
| TCCTGGGCTCCTTCGTGAAG+AGG | 0.564218 | 3_3:-84987271 | Msa0479830:CDS |
| AGGTAAAATACCAAATGCAC+TGG | 0.569638 | 3_3:-84985914 | Msa0479830:three_prime_UTR |
| GTACGCGTTCCTTTCGAGCA+GGG | 0.571183 | 3_3:-84986104 | Msa0479830:CDS |
| AATGGGACTTGATAAAACTT+GGG | 0.574691 | 3_3:+84991186 | None:intergenic |
| GGTTGATGGAGTGATCCGAC+GGG | 0.577054 | 3_3:+84989627 | None:intergenic |
| AATTATAGACAGTGAAAGCA+TGG | 0.578369 | 3_3:-84986016 | Msa0479830:three_prime_UTR |
| GTTGTTCAAGTTGAGGAGTG+AGG | 0.579571 | 3_3:+84991462 | None:intergenic |
| ATGCACTGGTGCAATATGCT+TGG | 0.579723 | 3_3:-84985900 | Msa0479830:three_prime_UTR |
| AGAAAATGCTGACAATCCAT+GGG | 0.582520 | 3_3:-84986428 | Msa0479830:CDS |
| AGTGAAAGCATGGTTATGCT+AGG | 0.584463 | 3_3:-84986006 | Msa0479830:three_prime_UTR |
| AGGTAACTGCATCGAAGTTG+TGG | 0.585142 | 3_3:-84990332 | Msa0479830:CDS |
| TAGGTTGGTCACAGCAGTAG+TGG | 0.586143 | 3_3:-84987493 | Msa0479830:CDS |
| TGGAGAGCTGTTATCAGACT+AGG | 0.587815 | 3_3:-84990815 | Msa0479830:CDS |
| TGGAGTGGATCAATTCTCGC+AGG | 0.587913 | 3_3:+84986164 | None:intergenic |
| TCAGGCTCCAGGCTCAGGTA+GGG | 0.588503 | 3_3:-84988702 | Msa0479830:CDS |
| ATATCTAGTCCTTACTTGGG+AGG | 0.589671 | 3_3:+84990285 | None:intergenic |
| CTTGGGAGGCTTGAATTCCA+AGG | 0.591311 | 3_3:+84991203 | None:intergenic |
| AAGAAGAGTGAGCCGTGGAG+AGG | 0.592568 | 3_3:-84991977 | Msa0479830:five_prime_UTR |
| AACCTTAAGAGCAGTCTCCA+AGG | 0.593819 | 3_3:+84987983 | None:intergenic |
| CTAGTCCTTACTTGGGAGGG+TGG | 0.595303 | 3_3:+84990289 | None:intergenic |
| CAATAATAACAATGCTGGCG+AGG | 0.595839 | 3_3:-84991396 | Msa0479830:intron |
| ATCAGGCTCCAGGCTCAGGT+AGG | 0.598841 | 3_3:-84988703 | Msa0479830:CDS |
| ATGGCTGCTTATGATGAAGC+CGG | 0.600910 | 3_3:-84991285 | Msa0479830:CDS |
| GATTCACAAAATAGTAGGGG+AGG | 0.603712 | 3_3:+84987943 | None:intergenic |
| AGAGAAAGAAGAGTGAGCCG+TGG | 0.606262 | 3_3:-84991982 | Msa0479830:five_prime_UTR |
| TGGTTGATGGAGTGATCCGA+CGG | 0.606756 | 3_3:+84989626 | None:intergenic |
| TATCTAGTCCTTACTTGGGA+GGG | 0.608180 | 3_3:+84990286 | None:intergenic |
| ACTCCATCAACCATCGAGTG+TGG | 0.608784 | 3_3:-84989616 | Msa0479830:CDS |
| GTCACAGCAGTAGTGGACAT+TGG | 0.609262 | 3_3:-84987486 | Msa0479830:CDS |
| ATTCTCTCGCATTCTCAACA+AGG | 0.614488 | 3_3:-84991737 | Msa0479830:intron |
| CAGACCTTAACAGCTGACTC+AGG | 0.614584 | 3_3:+84988608 | None:intergenic |
| GGGACTTGATAAAACTTGGG+AGG | 0.626061 | 3_3:+84991189 | None:intergenic |
| GATCTTCACCCAATCAGCTG+GGG | 0.626273 | 3_3:+84987461 | None:intergenic |
| CTCAGACAGAAATCAATGGA+GGG | 0.633845 | 3_3:-84991590 | Msa0479830:intron |
| TCAGCAGCTCCACCTCTCCA+CGG | 0.636350 | 3_3:+84991965 | None:intergenic |
| CAGACTAGGTGGCTATGAAG+TGG | 0.636788 | 3_3:-84990801 | Msa0479830:intron |
| CGGGTCCAATCCGATCCAGT+TGG | 0.638558 | 3_3:-84986475 | Msa0479830:CDS |
| ACTCAGACAGAAATCAATGG+AGG | 0.640060 | 3_3:-84991591 | Msa0479830:intron |
| CACAGAGCAAATGTGGATTG+GGG | 0.640717 | 3_3:-84987916 | Msa0479830:CDS |
| TTGGGTGAAGATCAATGTGC+GGG | 0.643862 | 3_3:-84987451 | Msa0479830:CDS |
| ATCTTCACCCAATCAGCTGG+GGG | 0.651763 | 3_3:+84987462 | None:intergenic |
| TCGAGCATTTCTACAGATCG+AGG | 0.659811 | 3_3:-84991227 | Msa0479830:CDS |
| GGGGAGTTACAGCTCCCCGT+CGG | 0.668666 | 3_3:-84989642 | Msa0479830:CDS |
| ACAACAGCAGATGTTTGGAG+TGG | 0.672692 | 3_3:+84986149 | None:intergenic |
| TAAAGATAACGGAACTACAG+AGG | 0.675556 | 3_3:+84987245 | None:intergenic |
| GCGCCTTATGGGATACGGCG+AGG | 0.677937 | 3_3:-84988633 | Msa0479830:CDS |
| ATTGATTCACAAAATAGTAG+GGG | 0.678661 | 3_3:+84987940 | None:intergenic |
| TAACTGCATCGAAGTTGTGG+CGG | 0.684336 | 3_3:-84990329 | Msa0479830:CDS |
| GCTCTGTCATCCATACCAGA+CGG | 0.693775 | 3_3:+84988333 | None:intergenic |
| GAGAATTAATTAGAGTAACG+CGG | 0.696958 | 3_3:+84991797 | None:intergenic |
| GCCTGGAGCCTGATAAACAG+CGG | 0.707020 | 3_3:+84988712 | None:intergenic |
| ATTGGGTGAAGATCAATGTG+CGG | 0.707083 | 3_3:-84987452 | Msa0479830:CDS |
| AGAGCTGTTATCAGACTAGG+TGG | 0.717567 | 3_3:-84990812 | Msa0479830:CDS |
| GTTGATGGAGTGATCCGACG+GGG | 0.734614 | 3_3:+84989628 | None:intergenic |
| CAGAGGTTACCTCTTCACGA+AGG | 0.753208 | 3_3:+84987262 | None:intergenic |
| GAAAATGCTGACAATCCATG+GGG | 0.772709 | 3_3:-84986427 | Msa0479830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATTATTAAAATGAAAA+TGG | + | chr3_3:84987396-84987415 | None:intergenic | 10.0% |
| !!! | TAATTCTTTATTTTATTTTG+CGG | + | chr3_3:84989733-84989752 | None:intergenic | 10.0% |
| !! | AAATTATTGCAATATATTAT+AGG | - | chr3_3:84990866-84990885 | Msa0479830:intron | 10.0% |
| !! | TAAAAATGTATTCAAAAGAA+TGG | + | chr3_3:84986476-84986495 | None:intergenic | 15.0% |
| !!! | TTTTATATAATACATACTTG+AGG | + | chr3_3:84986646-84986665 | None:intergenic | 15.0% |
| !!! | CATTTGTTATTAAATATTAG+AGG | - | chr3_3:84988663-84988682 | Msa0479830:CDS | 15.0% |
| !! | GTAAAACTTACTTAATATTA+AGG | - | chr3_3:84990599-84990618 | Msa0479830:intron | 15.0% |
| !! | TGAAAATAGTAAATATATCA+AGG | + | chr3_3:84991444-84991463 | None:intergenic | 15.0% |
| !!! | ATATATTTACTATTTTCATC+TGG | - | chr3_3:84991446-84991465 | Msa0479830:CDS | 15.0% |
| !! | AACAATATTAAATATTAGCT+TGG | - | chr3_3:84991551-84991570 | Msa0479830:CDS | 15.0% |
| !! | CTATAAAATGCAAAAAACTA+CGG | + | chr3_3:84987079-84987098 | None:intergenic | 20.0% |
| !!! | TCATTATATTCTAGTTTGTT+TGG | - | chr3_3:84987300-84987319 | Msa0479830:CDS | 20.0% |
| !!! | ATTTAGTTCTCTTATGTTTT+TGG | - | chr3_3:84987370-84987389 | Msa0479830:intron | 20.0% |
| !!! | TCAGTTATTTATTTTTGAAC+AGG | + | chr3_3:84987427-84987446 | None:intergenic | 20.0% |
| !!! | ATAACAAGTTTTTCATTTCT+AGG | + | chr3_3:84988749-84988768 | None:intergenic | 20.0% |
| !! | GAAAAGAACCTAAAAAATAT+CGG | - | chr3_3:84989345-84989364 | Msa0479830:intron | 20.0% |
| !!! | TATTGATTCACAAAATAGTA+GGG | + | chr3_3:84989864-84989883 | None:intergenic | 20.0% |
| !! | AGGAATTATTAATGGTTAAA+TGG | + | chr3_3:84989970-84989989 | None:intergenic | 20.0% |
| !!! | TTTCAAGTAGGAATTATTAA+TGG | + | chr3_3:84989978-84989997 | None:intergenic | 20.0% |
| !!! | AATTATTTCAGATTTCAAGT+AGG | + | chr3_3:84989990-84990009 | None:intergenic | 20.0% |
| !! | ATAACAAAGGATAAAGATAA+CGG | + | chr3_3:84990569-84990588 | None:intergenic | 20.0% |
| !!! | ATTTTTGATTCAATAGAACT+AGG | + | chr3_3:84990627-84990646 | None:intergenic | 20.0% |
| !! | CTATTGAATCAAAAATATGT+CGG | - | chr3_3:84990631-84990650 | Msa0479830:intron | 20.0% |
| !!! | AAAACCGACATTTTTTTTTT+GGG | + | chr3_3:84990788-84990807 | None:intergenic | 20.0% |
| !!! | ATTTTTAGGTAATTAAGACT+CGG | + | chr3_3:84990816-84990835 | None:intergenic | 20.0% |
| !!! | TTTTATTACCAGTGATTTTT+AGG | + | chr3_3:84990830-84990849 | None:intergenic | 20.0% |
| !!! | ATCCAAAAAAAATCTTTTCA+GGG | - | chr3_3:84991106-84991125 | Msa0479830:intron | 20.0% |
| ! | AAAACTCAGAATGGATAATT+GGG | + | chr3_3:84985939-84985958 | None:intergenic | 25.0% |
| ! | TTGTTATCTTATTATGCAGA+TGG | - | chr3_3:84986496-84986515 | Msa0479830:intron | 25.0% |
| ! | ACTGTAACAAACAATTTGAA+GGG | + | chr3_3:84986670-84986689 | None:intergenic | 25.0% |
| ! | TACTGTAACAAACAATTTGA+AGG | + | chr3_3:84986671-84986690 | None:intergenic | 25.0% |
| ! | GCTAAATGCTGAATATATAA+GGG | - | chr3_3:84986769-84986788 | Msa0479830:intron | 25.0% |
| ! | TTCAAAACTAGTATACGTTA+CGG | + | chr3_3:84986897-84986916 | None:intergenic | 25.0% |
| !! | TCATTTAGTGCTATATGTTT+TGG | - | chr3_3:84987340-84987359 | Msa0479830:intron | 25.0% |
| !! | CATTTAGTGCTATATGTTTT+GGG | - | chr3_3:84987341-84987360 | Msa0479830:intron | 25.0% |
| ! | AATATTCACCGAATATATGT+AGG | - | chr3_3:84987448-84987467 | Msa0479830:CDS | 25.0% |
| ! | AATATATCTAGTCCTTACTT+GGG | + | chr3_3:84987521-84987540 | None:intergenic | 25.0% |
| ! | TAATATATCTAGTCCTTACT+TGG | + | chr3_3:84987522-84987541 | None:intergenic | 25.0% |
| !!! | GTTTAGAATCTTTTATGAGA+AGG | - | chr3_3:84987778-84987797 | Msa0479830:intron | 25.0% |
| ! | CATGTAATAACAGAAAATCT+TGG | + | chr3_3:84987987-84988006 | None:intergenic | 25.0% |
| ! | ATCTATCTATCTATCTATCA+AGG | + | chr3_3:84988578-84988597 | None:intergenic | 25.0% |
| !!! | AAACTTATGAGCCATTTTTT+GGG | + | chr3_3:84988613-84988632 | None:intergenic | 25.0% |
| !!! | AAAACTTATGAGCCATTTTT+TGG | + | chr3_3:84988614-84988633 | None:intergenic | 25.0% |
| !!! | ATACTGACTTTAAGAAACAA+AGG | - | chr3_3:84988875-84988894 | Msa0479830:intron | 25.0% |
| ! | AACACAACAAATGACAATAA+GGG | + | chr3_3:84989241-84989260 | None:intergenic | 25.0% |
| ! | AAACACAACAAATGACAATA+AGG | + | chr3_3:84989242-84989261 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTGTTTATACAT+TGG | - | chr3_3:84989248-84989267 | Msa0479830:intron | 25.0% |
| ! | TTATGATGCAAGTAAGTTAT+AGG | + | chr3_3:84989399-84989418 | None:intergenic | 25.0% |
| ! | ATTTATATCTGTTTCACTGT+TGG | - | chr3_3:84989555-84989574 | Msa0479830:intron | 25.0% |
| ! | GTGAAATAAAAGATAGTAGA+TGG | + | chr3_3:84989586-84989605 | None:intergenic | 25.0% |
| !!! | ACGAAACTTGTTATAATGAA+GGG | + | chr3_3:84989631-84989650 | None:intergenic | 25.0% |
| !!! | AACGAAACTTGTTATAATGA+AGG | + | chr3_3:84989632-84989651 | None:intergenic | 25.0% |
| !! | ATTGATTCACAAAATAGTAG+GGG | + | chr3_3:84989863-84989882 | None:intergenic | 25.0% |
| !!! | GTATTGATTCACAAAATAGT+AGG | + | chr3_3:84989865-84989884 | None:intergenic | 25.0% |
| !!! | ATTAATGGTTAAATGGATTG+TGG | + | chr3_3:84989963-84989982 | None:intergenic | 25.0% |
| !! | TGAAATCTGAAATAATTGAG+AGG | - | chr3_3:84989993-84990012 | Msa0479830:intron | 25.0% |
| ! | TTAATGATGCACTTTGAATT+TGG | + | chr3_3:84990236-84990255 | None:intergenic | 25.0% |
| ! | AGATGAAAATCATTTAGCTA+TGG | + | chr3_3:84990285-84990304 | None:intergenic | 25.0% |
| !! | ATAGCTAAATGATTTTCATC+TGG | - | chr3_3:84990284-84990303 | Msa0479830:intron | 25.0% |
| ! | TACATTAAAGGACATGAATT+GGG | + | chr3_3:84990406-84990425 | None:intergenic | 25.0% |
| ! | ATACATTAAAGGACATGAAT+TGG | + | chr3_3:84990407-84990426 | None:intergenic | 25.0% |
| ! | CTGCAATTATGATACATTAA+AGG | + | chr3_3:84990418-84990437 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTGGGGTATGT+AGG | + | chr3_3:84990779-84990798 | None:intergenic | 25.0% |
| ! | ATACCCCAAAAAAAAAATGT+CGG | - | chr3_3:84990781-84990800 | Msa0479830:intron | 25.0% |
| !!! | AAACCGACATTTTTTTTTTG+GGG | + | chr3_3:84990787-84990806 | None:intergenic | 25.0% |
| !!! | GAAAACCGACATTTTTTTTT+TGG | + | chr3_3:84990789-84990808 | None:intergenic | 25.0% |
| ! | CTTAATTACCTAAAAATCAC+TGG | - | chr3_3:84990819-84990838 | Msa0479830:CDS | 25.0% |
| ! | ATCACTGGTAATAAAAAACT+TGG | - | chr3_3:84990834-84990853 | Msa0479830:intron | 25.0% |
| !! | GATCCAAAAAAAATCTTTTC+AGG | - | chr3_3:84991105-84991124 | Msa0479830:intron | 25.0% |
| !! | TCCAAAAAAAATCTTTTCAG+GGG | - | chr3_3:84991107-84991126 | Msa0479830:intron | 25.0% |
| ! | CATAATCGCTCAATTATTTA+AGG | - | chr3_3:84991178-84991197 | Msa0479830:CDS | 25.0% |
| ! | ATAAAAACATAAACCAAGGA+AGG | + | chr3_3:84991279-84991298 | None:intergenic | 25.0% |
| ! | CGTAATAAAAACATAAACCA+AGG | + | chr3_3:84991283-84991302 | None:intergenic | 25.0% |
| !!! | TAGTTTTAACTAAACCAACA+GGG | + | chr3_3:84991831-84991850 | None:intergenic | 25.0% |
| !!! | ATAGTTTTAACTAAACCAAC+AGG | + | chr3_3:84991832-84991851 | None:intergenic | 25.0% |
| ! | ATCAATGATTTATTCTCTCT+AGG | - | chr3_3:84991866-84991885 | Msa0479830:five_prime_UTR | 25.0% |
| GAAAACTCAGAATGGATAAT+TGG | + | chr3_3:84985940-84985959 | None:intergenic | 30.0% | |
| GATTCAATGAAAACTCAGAA+TGG | + | chr3_3:84985948-84985967 | None:intergenic | 30.0% | |
| GAGAATTAATTAGAGTAACG+CGG | + | chr3_3:84986006-84986025 | None:intergenic | 30.0% | |
| !! | AGTAAGTAGGGTTTTGTAAA+GGG | + | chr3_3:84986192-84986211 | None:intergenic | 30.0% |
| !! | ACGTTCTTAACTTTAGGTTT+TGG | + | chr3_3:84986375-84986394 | None:intergenic | 30.0% |
| TCTGTAACGTTCTTAACTTT+AGG | + | chr3_3:84986381-84986400 | None:intergenic | 30.0% | |
| GAAGTCAATAATAACAATGC+TGG | - | chr3_3:84986399-84986418 | Msa0479830:intron | 30.0% | |
| AATGGGACTTGATAAAACTT+GGG | + | chr3_3:84986617-84986636 | None:intergenic | 30.0% | |
| TGAAAATACTTGCGAGAAAA+AGG | + | chr3_3:84986697-84986716 | None:intergenic | 30.0% | |
| ! | TTCTCGCAAGTATTTTCAAA+TGG | - | chr3_3:84986699-84986718 | Msa0479830:intron | 30.0% |
| GGCTAAATGCTGAATATATA+AGG | - | chr3_3:84986768-84986787 | Msa0479830:intron | 30.0% | |
| AAATGCTGAATATATAAGGG+AGG | - | chr3_3:84986772-84986791 | Msa0479830:intron | 30.0% | |
| ATGAGCAATAATGAAGCAAA+TGG | + | chr3_3:84987032-84987051 | None:intergenic | 30.0% | |
| TGCAGTTACCTACATATATT+CGG | + | chr3_3:84987459-84987478 | None:intergenic | 30.0% | |
| GTAAGATAATGAACAGCAAA+GGG | + | chr3_3:84987713-84987732 | None:intergenic | 30.0% | |
| AGTAAGATAATGAACAGCAA+AGG | + | chr3_3:84987714-84987733 | None:intergenic | 30.0% | |
| TGAAAAATCTCAATTTGTGC+AGG | - | chr3_3:84988100-84988119 | Msa0479830:intron | 30.0% | |
| ! | AAAAGCATAAGAGAGAGATT+GGG | - | chr3_3:84988138-84988157 | Msa0479830:intron | 30.0% |
| ATGAAATCATATAACCAGAG+GGG | + | chr3_3:84988239-84988258 | None:intergenic | 30.0% | |
| CATGAAATCATATAACCAGA+GGG | + | chr3_3:84988240-84988259 | None:intergenic | 30.0% | |
| ACATGAAATCATATAACCAG+AGG | + | chr3_3:84988241-84988260 | None:intergenic | 30.0% | |
| ATGATTTCATGTCTACGTAT+AGG | - | chr3_3:84988249-84988268 | Msa0479830:intron | 30.0% | |
| GTTATACTCATATCTTGCAT+TGG | - | chr3_3:84988332-84988351 | Msa0479830:CDS | 30.0% | |
| ! | TTTTCTTTAGCACAGTTAAG+CGG | - | chr3_3:84988489-84988508 | Msa0479830:intron | 30.0% |
| GAAAAGATAAGGAACTGAAT+GGG | - | chr3_3:84988511-84988530 | Msa0479830:intron | 30.0% | |
| !! | ATGGGTTTTTGTTTATGATC+AGG | - | chr3_3:84988529-84988548 | Msa0479830:intron | 30.0% |
| !! | TGGGTTTTTGTTTATGATCA+GGG | - | chr3_3:84988530-84988549 | Msa0479830:intron | 30.0% |
| ! | TTTCATTTCTAGGTATTCGT+TGG | + | chr3_3:84988739-84988758 | None:intergenic | 30.0% |
| !! | GTTTCTTTGAAACTGACAAT+TGG | - | chr3_3:84988784-84988803 | Msa0479830:intron | 30.0% |
| ! | GACTTTAAGAAACAAAGGAA+AGG | - | chr3_3:84988880-84988899 | Msa0479830:intron | 30.0% |
| ACACAACAAATGACAATAAG+GGG | + | chr3_3:84989240-84989259 | None:intergenic | 30.0% | |
| !! | TTTAGGTTCTTTTCACGTTT+TGG | + | chr3_3:84989339-84989358 | None:intergenic | 30.0% |
| !!! | TGAGCATACCGATATTTTTT+AGG | + | chr3_3:84989356-84989375 | None:intergenic | 30.0% |
| GTCTCATATTGGATAAGATA+AGG | - | chr3_3:84990028-84990047 | Msa0479830:CDS | 30.0% | |
| ACAAAACCGGATTATAGAAA+GGG | + | chr3_3:84990084-84990103 | None:intergenic | 30.0% | |
| TACAAAACCGGATTATAGAA+AGG | + | chr3_3:84990085-84990104 | None:intergenic | 30.0% | |
| !! | TTTCTATAATCCGGTTTTGT+AGG | - | chr3_3:84990084-84990103 | Msa0479830:intron | 30.0% |
| CTACAAAATCAGCTTATAGA+GGG | + | chr3_3:84990121-84990140 | None:intergenic | 30.0% | |
| !! | CTCTATAAGCTGATTTTGTA+GGG | - | chr3_3:84990120-84990139 | Msa0479830:intron | 30.0% |
| ! | CTAAATGATTTTCATCTGGT+AGG | - | chr3_3:84990288-84990307 | Msa0479830:intron | 30.0% |
| ATACTTCAAAACAATCCTTC+TGG | + | chr3_3:84990499-84990518 | None:intergenic | 30.0% | |
| !!! | ATCCTTTGTTATTTTTGTGC+TGG | - | chr3_3:84990577-84990596 | Msa0479830:intron | 30.0% |
| TACCAGCACAAAAATAACAA+AGG | + | chr3_3:84990582-84990601 | None:intergenic | 30.0% | |
| TAAGCTTAGATGTATAACGT+AGG | - | chr3_3:84990899-84990918 | Msa0479830:intron | 30.0% | |
| TTCCAACACATACAAAACTA+TGG | + | chr3_3:84991019-84991038 | None:intergenic | 30.0% | |
| TGGATCATGAAATACAAGTA+GGG | + | chr3_3:84991091-84991110 | None:intergenic | 30.0% | |
| TTGGATCATGAAATACAAGT+AGG | + | chr3_3:84991092-84991111 | None:intergenic | 30.0% | |
| !!! | ACCCCTGAAAAGATTTTTTT+TGG | + | chr3_3:84991111-84991130 | None:intergenic | 30.0% |
| ATCGCTCAATTATTTAAGGA+TGG | - | chr3_3:84991182-84991201 | Msa0479830:CDS | 30.0% | |
| ! | TGTTTTCACTTGCTTAGTTT+TGG | - | chr3_3:84991206-84991225 | Msa0479830:CDS | 30.0% |
| CAAGGAAGGAAAAATCATAA+AGG | + | chr3_3:84991265-84991284 | None:intergenic | 30.0% | |
| ! | CTTTATGATTTTTCCTTCCT+TGG | - | chr3_3:84991263-84991282 | Msa0479830:CDS | 30.0% |
| !! | ATAGAGTTACCTTTTTGAAG+GGG | + | chr3_3:84991405-84991424 | None:intergenic | 30.0% |
| ! | GATAGAGTTACCTTTTTGAA+GGG | + | chr3_3:84991406-84991425 | None:intergenic | 30.0% |
| ! | AGATAGAGTTACCTTTTTGA+AGG | + | chr3_3:84991407-84991426 | None:intergenic | 30.0% |
| !! | TTGGCTTGTGATTTGAAAAT+GGG | - | chr3_3:84991570-84991589 | Msa0479830:CDS | 30.0% |
| AATGGGTAAATGAAATTAGC+TGG | - | chr3_3:84991587-84991606 | Msa0479830:exon | 30.0% | |
| !!! | TTAGCTGGTTTTTTTTTTCC+AGG | - | chr3_3:84991602-84991621 | Msa0479830:intron | 30.0% |
| AATTATAGACAGTGAAAGCA+TGG | - | chr3_3:84991784-84991803 | Msa0479830:five_prime_UTR | 30.0% | |
| !! | TGAGTGCTGATACTCAAAAA+CGG | - | chr3_3:84985855-84985874 | Msa0479830:three_prime_UTR | 35.0% |
| GTGTGACGAATTGTTTGTTT+GGG | + | chr3_3:84985894-84985913 | None:intergenic | 35.0% | |
| TGTGTGACGAATTGTTTGTT+TGG | + | chr3_3:84985895-84985914 | None:intergenic | 35.0% | |
| !! | GAGTAAGTAGGGTTTTGTAA+AGG | + | chr3_3:84986193-84986212 | None:intergenic | 35.0% |
| GATTTCTGTCTGAGTAAGTA+GGG | + | chr3_3:84986204-84986223 | None:intergenic | 35.0% | |
| TGATTTCTGTCTGAGTAAGT+AGG | + | chr3_3:84986205-84986224 | None:intergenic | 35.0% | |
| CTTACTCAGACAGAAATCAA+TGG | - | chr3_3:84986206-84986225 | Msa0479830:intron | 35.0% | |
| !! | TGTTGTTGTTGTTCAAGTTG+AGG | + | chr3_3:84986348-84986367 | None:intergenic | 35.0% |
| CAATGGGACTTGATAAAACT+TGG | + | chr3_3:84986618-84986637 | None:intergenic | 35.0% | |
| CATACTTGAGGCAATTCAAT+GGG | + | chr3_3:84986634-84986653 | None:intergenic | 35.0% | |
| ACATACTTGAGGCAATTCAA+TGG | + | chr3_3:84986635-84986654 | None:intergenic | 35.0% | |
| TAACTGTTCTGATCTGATAG+CGG | - | chr3_3:84986932-84986951 | Msa0479830:intron | 35.0% | |
| ATGCAAAAAACTACGGTGAT+GGG | + | chr3_3:84987072-84987091 | None:intergenic | 35.0% | |
| AATGCAAAAAACTACGGTGA+TGG | + | chr3_3:84987073-84987092 | None:intergenic | 35.0% | |
| !! | ATATAACTTTAGGGCAACAC+AGG | + | chr3_3:84987201-84987220 | None:intergenic | 35.0% |
| GTGCTCATAACTAGTTGTTA+TGG | - | chr3_3:84987626-84987645 | Msa0479830:intron | 35.0% | |
| AGTCACACTTGAAATAGTAC+AGG | + | chr3_3:84988019-84988038 | None:intergenic | 35.0% | |
| ! | TTTTCAGACATCAGACACAA+AGG | + | chr3_3:84988086-84988105 | None:intergenic | 35.0% |
| ! | GAAAAGCATAAGAGAGAGAT+TGG | - | chr3_3:84988137-84988156 | Msa0479830:intron | 35.0% |
| AAAGCATAAGAGAGAGATTG+GGG | - | chr3_3:84988139-84988158 | Msa0479830:intron | 35.0% | |
| TGAAATCATATAACCAGAGG+GGG | + | chr3_3:84988238-84988257 | None:intergenic | 35.0% | |
| ! | TATTTTCCTTTGTCGTGGAA+TGG | - | chr3_3:84988296-84988315 | Msa0479830:intron | 35.0% |
| ! | ATTTTCCTTTGTCGTGGAAT+GGG | - | chr3_3:84988297-84988316 | Msa0479830:CDS | 35.0% |
| GCAAAAACTCTTCACATTAC+TGG | - | chr3_3:84988376-84988395 | Msa0479830:intron | 35.0% | |
| ACAGTTAAGCGGAAAAGATA+AGG | - | chr3_3:84988500-84988519 | Msa0479830:intron | 35.0% | |
| GGAAAAGATAAGGAACTGAA+TGG | - | chr3_3:84988510-84988529 | Msa0479830:intron | 35.0% | |
| AGAAACAGAAGCCCAAAAAA+TGG | - | chr3_3:84988599-84988618 | Msa0479830:intron | 35.0% | |
| TGAACTTTCATGTGTACTAG+AGG | - | chr3_3:84988695-84988714 | Msa0479830:CDS | 35.0% | |
| GAACTTTCATGTGTACTAGA+GGG | - | chr3_3:84988696-84988715 | Msa0479830:CDS | 35.0% | |
| CTGTGCAAGAAAATACAAAG+AGG | + | chr3_3:84989295-84989314 | None:intergenic | 35.0% | |
| ! | CTCTTTGTATTTTCTTGCAC+AGG | - | chr3_3:84989293-84989312 | Msa0479830:intron | 35.0% |
| !! | TTCTTTTCACGTTTTGGTGT+GGG | + | chr3_3:84989333-84989352 | None:intergenic | 35.0% |
| CTTCGTTGCTTCAATGAATT+AGG | - | chr3_3:84989422-84989441 | Msa0479830:intron | 35.0% | |
| ATAATGAAGGGAACTCACAT+GGG | + | chr3_3:84989619-84989638 | None:intergenic | 35.0% | |
| TATAATGAAGGGAACTCACA+TGG | + | chr3_3:84989620-84989639 | None:intergenic | 35.0% | |
| ATCAATACACAGAGCAAATG+TGG | - | chr3_3:84989877-84989896 | Msa0479830:intron | 35.0% | |
| ! | TATTTTGCATGATGTCAGTG+TGG | - | chr3_3:84989916-84989935 | Msa0479830:intron | 35.0% |
| ! | TGTGGTGTCAGTAATATAGA+TGG | + | chr3_3:84989945-84989964 | None:intergenic | 35.0% |
| AGCTGTTAAGAGTCTCATAT+TGG | - | chr3_3:84990017-84990036 | Msa0479830:intron | 35.0% | |
| TTGAAAATGCGTTTACAGGT+AGG | - | chr3_3:84990052-84990071 | Msa0479830:intron | 35.0% | |
| CTAACTCATACCTACAAAAC+CGG | + | chr3_3:84990097-84990116 | None:intergenic | 35.0% | |
| CCTACAAAATCAGCTTATAG+AGG | + | chr3_3:84990122-84990141 | None:intergenic | 35.0% | |
| !! | CCTCTATAAGCTGATTTTGT+AGG | - | chr3_3:84990119-84990138 | Msa0479830:intron | 35.0% |
| !! | ATAAGCTGATTTTGTAGGGA+TGG | - | chr3_3:84990124-84990143 | Msa0479830:intron | 35.0% |
| !! | TAAGCTGATTTTGTAGGGAT+GGG | - | chr3_3:84990125-84990144 | Msa0479830:intron | 35.0% |
| AAAGTCTATCCAAGATGCTT+TGG | - | chr3_3:84990178-84990197 | Msa0479830:intron | 35.0% | |
| AAGTCTATCCAAGATGCTTT+GGG | - | chr3_3:84990179-84990198 | Msa0479830:intron | 35.0% | |
| TGATGCACTTTGAATTTGGA+GGG | + | chr3_3:84990232-84990251 | None:intergenic | 35.0% | |
| ATGATGCACTTTGAATTTGG+AGG | + | chr3_3:84990233-84990252 | None:intergenic | 35.0% | |
| ! | ATGATTTTCATCTGGTAGGT+TGG | - | chr3_3:84990292-84990311 | Msa0479830:intron | 35.0% |
| ! | AAGTATATGCTCTAGTTCCT+GGG | - | chr3_3:84990513-84990532 | Msa0479830:intron | 35.0% |
| !! | TAAAGATAACGGAACTACAG+AGG | + | chr3_3:84990558-84990577 | None:intergenic | 35.0% |
| GTTGTCCAACCTAGTAATTT+CGG | + | chr3_3:84990689-84990708 | None:intergenic | 35.0% | |
| !! | CACTTTTTACTGAGCTGTTT+TGG | - | chr3_3:84990960-84990979 | Msa0479830:intron | 35.0% |
| CAACACATACAAAACTATGG+TGG | + | chr3_3:84991016-84991035 | None:intergenic | 35.0% | |
| !!! | CACCATAGTTTTGTATGTGT+TGG | - | chr3_3:84991014-84991033 | Msa0479830:intron | 35.0% |
| ! | ATTTGATGACATGACCTTGA+TGG | - | chr3_3:84991042-84991061 | Msa0479830:intron | 35.0% |
| TTAACATGACAATGCCATCA+AGG | + | chr3_3:84991059-84991078 | None:intergenic | 35.0% | |
| !! | TTCTCTAAAGTGAACAAGAG+TGG | - | chr3_3:84991132-84991151 | Msa0479830:intron | 35.0% |
| TTGAGCGATTATGAACACAA+TGG | + | chr3_3:84991171-84991190 | None:intergenic | 35.0% | |
| ACGATTGATTGAATGAATCC+AGG | - | chr3_3:84991300-84991319 | Msa0479830:intron | 35.0% | |
| TGATTGAATGAATCCAGGTA+CGG | - | chr3_3:84991305-84991324 | Msa0479830:intron | 35.0% | |
| AGAAAATGCTGACAATCCAT+GGG | - | chr3_3:84991372-84991391 | Msa0479830:intron | 35.0% | |
| !! | TAGAGTTACCTTTTTGAAGG+GGG | + | chr3_3:84991404-84991423 | None:intergenic | 35.0% |
| !! | CTTGGCTTGTGATTTGAAAA+TGG | - | chr3_3:84991569-84991588 | Msa0479830:CDS | 35.0% |
| AACTAACAACAGCAGATGTT+TGG | + | chr3_3:84991659-84991678 | None:intergenic | 35.0% | |
| GTTTCTCGCATATTCTCAAA+AGG | - | chr3_3:84991753-84991772 | Msa0479830:five_prime_UTR | 35.0% | |
| AGGTAAAATACCAAATGCAC+TGG | - | chr3_3:84991886-84991905 | Msa0479830:intron | 35.0% | |
| ATTCTCTCGCATTCTCAACA+AGG | - | chr3_3:84986063-84986082 | Msa0479830:three_prime_UTR | 40.0% | |
| ATGAGAAAGAGAAACGACGA+CGG | + | chr3_3:84986101-84986120 | None:intergenic | 40.0% | |
| ACTCAGACAGAAATCAATGG+AGG | - | chr3_3:84986209-84986228 | Msa0479830:intron | 40.0% | |
| CTCAGACAGAAATCAATGGA+GGG | - | chr3_3:84986210-84986229 | Msa0479830:intron | 40.0% | |
| ATCAATGGAGGGTCATGAAA+TGG | - | chr3_3:84986221-84986240 | Msa0479830:intron | 40.0% | |
| !! | TTGTTCAAGTTGAGGAGTGA+GGG | + | chr3_3:84986340-84986359 | None:intergenic | 40.0% |
| CAATAATAACAATGCTGGCG+AGG | - | chr3_3:84986404-84986423 | Msa0479830:intron | 40.0% | |
| ATGCTCGAGCTCTTTCATAA+AGG | + | chr3_3:84986561-84986580 | None:intergenic | 40.0% | |
| CCTTACGGCATTAGGTATAT+GGG | + | chr3_3:84986806-84986825 | None:intergenic | 40.0% | |
| ACCTTACGGCATTAGGTATA+TGG | + | chr3_3:84986807-84986826 | None:intergenic | 40.0% | |
| ! | ACCTAATGCCGTAAGGTTTT+AGG | - | chr3_3:84986810-84986829 | Msa0479830:intron | 40.0% |
| ACCTAAAACCTTACGGCATT+AGG | + | chr3_3:84986814-84986833 | None:intergenic | 40.0% | |
| !!! | TAATGCCGTAAGGTTTTAGG+TGG | - | chr3_3:84986813-84986832 | Msa0479830:intron | 40.0% |
| CATCTCCACCTAAAACCTTA+CGG | + | chr3_3:84986821-84986840 | None:intergenic | 40.0% | |
| !!! | TAAGGTTTTAGGTGGAGATG+TGG | - | chr3_3:84986821-84986840 | Msa0479830:intron | 40.0% |
| !!! | AAGGTTTTAGGTGGAGATGT+GGG | - | chr3_3:84986822-84986841 | Msa0479830:intron | 40.0% |
| ATACTTCAGAACCACAAGAG+AGG | + | chr3_3:84986857-84986876 | None:intergenic | 40.0% | |
| TACGTTACGGAGAGCAATAA+CGG | + | chr3_3:84986884-84986903 | None:intergenic | 40.0% | |
| !! | CGGACTGCTTATTTTCTCAT+CGG | - | chr3_3:84986952-84986971 | Msa0479830:intron | 40.0% |
| CATTTCCCAATAAGAACGCA+TGG | - | chr3_3:84987124-84987143 | Msa0479830:intron | 40.0% | |
| ! | CAAGTCTTATCACGCTAGAT+GGG | + | chr3_3:84987258-84987277 | None:intergenic | 40.0% |
| TATCTAGTCCTTACTTGGGA+GGG | + | chr3_3:84987517-84987536 | None:intergenic | 40.0% | |
| ATATCTAGTCCTTACTTGGG+AGG | + | chr3_3:84987518-84987537 | None:intergenic | 40.0% | |
| CTGAATACATTCTCTACCAC+AGG | - | chr3_3:84987732-84987751 | Msa0479830:intron | 40.0% | |
| GAGACAATGTGCATCAGTTT+CGG | - | chr3_3:84987865-84987884 | Msa0479830:intron | 40.0% | |
| ! | CATCAGTTTCGGTGTGAATT+TGG | - | chr3_3:84987876-84987895 | Msa0479830:intron | 40.0% |
| AATCCAGAAGTTCTGTCACA+AGG | + | chr3_3:84987949-84987968 | None:intergenic | 40.0% | |
| CACAAAGGAAACAGAAGATC+AGG | + | chr3_3:84988071-84988090 | None:intergenic | 40.0% | |
| GAAATCATATAACCAGAGGG+GGG | + | chr3_3:84988237-84988256 | None:intergenic | 40.0% | |
| ! | TCCTCTATTTTCCTTTGTCG+TGG | - | chr3_3:84988291-84988310 | Msa0479830:intron | 40.0% |
| TCCACGACAAAGGAAAATAG+AGG | + | chr3_3:84988295-84988314 | None:intergenic | 40.0% | |
| ! | GTGGAATGGGTTTGATTCTT+CGG | - | chr3_3:84988310-84988329 | Msa0479830:CDS | 40.0% |
| TGCATTGGAAACAGAAGTTG+AGG | - | chr3_3:84988347-84988366 | Msa0479830:CDS | 40.0% | |
| CGTTGGCGTTTGTAAAATGT+AGG | + | chr3_3:84988722-84988741 | None:intergenic | 40.0% | |
| ATTGGCAACAACATCCAAGT+TGG | - | chr3_3:84988802-84988821 | Msa0479830:intron | 40.0% | |
| CCAATGACTTATCTCCAACT+TGG | + | chr3_3:84988819-84988838 | None:intergenic | 40.0% | |
| ! | CCAAGTTGGAGATAAGTCAT+TGG | - | chr3_3:84988816-84988835 | Msa0479830:intron | 40.0% |
| CTGGATATCACATCCATTAC+TGG | - | chr3_3:84988929-84988948 | Msa0479830:intron | 40.0% | |
| TTTATCAGCATGGCCAGTAA+TGG | + | chr3_3:84988945-84988964 | None:intergenic | 40.0% | |
| CCATGCTGATAAATGCAGAT+GGG | - | chr3_3:84988952-84988971 | Msa0479830:intron | 40.0% | |
| TGATAAATGCAGATGGGTGT+GGG | - | chr3_3:84988958-84988977 | Msa0479830:intron | 40.0% | |
| CAAGAGGCTTTACAGTTTGA+GGG | + | chr3_3:84988996-84989015 | None:intergenic | 40.0% | |
| ACAAGAGGCTTTACAGTTTG+AGG | + | chr3_3:84988997-84989016 | None:intergenic | 40.0% | |
| !! | CTCCTTGCTTTTCATTTTGC+CGG | + | chr3_3:84989038-84989057 | None:intergenic | 40.0% |
| TTTGTAGACCGCTGTTTATC+AGG | - | chr3_3:84989080-84989099 | Msa0479830:intron | 40.0% | |
| !! | GTTCTTTTCACGTTTTGGTG+TGG | + | chr3_3:84989334-84989353 | None:intergenic | 40.0% |
| AACAAACAAAGAACACCGTC+TGG | - | chr3_3:84989452-84989471 | Msa0479830:intron | 40.0% | |
| TAATGAAGGGAACTCACATG+GGG | + | chr3_3:84989618-84989637 | None:intergenic | 40.0% | |
| AAATAGTAGGGGAGGAAAGA+TGG | + | chr3_3:84989852-84989871 | None:intergenic | 40.0% | |
| GATTCACAAAATAGTAGGGG+AGG | + | chr3_3:84989860-84989879 | None:intergenic | 40.0% | |
| TACACAGAGCAAATGTGGAT+TGG | - | chr3_3:84989882-84989901 | Msa0479830:intron | 40.0% | |
| ACACAGAGCAAATGTGGATT+GGG | - | chr3_3:84989883-84989902 | Msa0479830:intron | 40.0% | |
| AGGCTTGAAAATGCGTTTAC+AGG | - | chr3_3:84990048-84990067 | Msa0479830:CDS | 40.0% | |
| AAAATGCGTTTACAGGTAGG+AGG | - | chr3_3:84990055-84990074 | Msa0479830:intron | 40.0% | |
| AGGCATCCCTTTCTATAATC+CGG | - | chr3_3:84990075-84990094 | Msa0479830:intron | 40.0% | |
| TTAGACCCAACCAAATTCCA+AGG | - | chr3_3:84990148-84990167 | Msa0479830:intron | 40.0% | |
| TTTGATGCCACCTTGGAATT+TGG | + | chr3_3:84990161-84990180 | None:intergenic | 40.0% | |
| ! | TGCTTTGGGTCATCTGTTAT+CGG | - | chr3_3:84990193-84990212 | Msa0479830:intron | 40.0% |
| TCATCTGTTATCGGGTTACT+TGG | - | chr3_3:84990202-84990221 | Msa0479830:intron | 40.0% | |
| CATCTGTTATCGGGTTACTT+GGG | - | chr3_3:84990203-84990222 | Msa0479830:intron | 40.0% | |
| ATTGGGTGAAGATCAATGTG+CGG | - | chr3_3:84990348-84990367 | Msa0479830:intron | 40.0% | |
| TTGCTATATCCATGTCCAGA+AGG | - | chr3_3:84990481-84990500 | Msa0479830:intron | 40.0% | |
| CAAAACAATCCTTCTGGACA+TGG | + | chr3_3:84990493-84990512 | None:intergenic | 40.0% | |
| ! | GAAGTATATGCTCTAGTTCC+TGG | - | chr3_3:84990512-84990531 | Msa0479830:intron | 40.0% |
| !! | GTTGTGACTGTGAGTTTTAG+TGG | - | chr3_3:84990739-84990758 | Msa0479830:intron | 40.0% |
| GATTGAATGAATCCAGGTAC+GGG | - | chr3_3:84991306-84991325 | Msa0479830:intron | 40.0% | |
| GTTATAACAAGTCGTCCAAC+TGG | + | chr3_3:84991343-84991362 | None:intergenic | 40.0% | |
| !! | GTTGGACGACTTGTTATAAC+TGG | - | chr3_3:84991343-84991362 | Msa0479830:intron | 40.0% |
| !! | CATGGATTGTCAGCATTTTC+TGG | + | chr3_3:84991373-84991392 | None:intergenic | 40.0% |
| CAGAAAATGCTGACAATCCA+TGG | - | chr3_3:84991371-84991390 | Msa0479830:intron | 40.0% | |
| GAAAATGCTGACAATCCATG+GGG | - | chr3_3:84991373-84991392 | Msa0479830:intron | 40.0% | |
| !! | TCTGCTGTTGTTAGTTTGCA+TGG | - | chr3_3:84991663-84991682 | Msa0479830:intron | 40.0% |
| ! | GAGAAACCAATCATTTTCCG+GGG | + | chr3_3:84991740-84991759 | None:intergenic | 40.0% |
| ! | CGAGAAACCAATCATTTTCC+GGG | + | chr3_3:84991741-84991760 | None:intergenic | 40.0% |
| ! | GCGAGAAACCAATCATTTTC+CGG | + | chr3_3:84991742-84991761 | None:intergenic | 40.0% |
| ! | AGTGAAAGCATGGTTATGCT+AGG | - | chr3_3:84991794-84991813 | Msa0479830:five_prime_UTR | 40.0% |
| !! | GTTGTTCAAGTTGAGGAGTG+AGG | + | chr3_3:84986341-84986360 | None:intergenic | 45.0% |
| ATGGCTGCTTATGATGAAGC+CGG | - | chr3_3:84986515-84986534 | Msa0479830:intron | 45.0% | |
| ATAAAGGCTTCTCGCTCCAT+AGG | + | chr3_3:84986545-84986564 | None:intergenic | 45.0% | |
| TCGAGCATTTCTACAGATCG+AGG | - | chr3_3:84986573-84986592 | Msa0479830:intron | 45.0% | |
| TTTCTACAGATCGAGGTCCT+TGG | - | chr3_3:84986580-84986599 | Msa0479830:intron | 45.0% | |
| GGGACTTGATAAAACTTGGG+AGG | + | chr3_3:84986614-84986633 | None:intergenic | 45.0% | |
| GTCCCACATCAACTGTGAAT+TGG | - | chr3_3:84986744-84986763 | Msa0479830:intron | 45.0% | |
| ! | CGCCAATTCACAGTTGATGT+GGG | + | chr3_3:84986749-84986768 | None:intergenic | 45.0% |
| CCACATCAACTGTGAATTGG+CGG | - | chr3_3:84986747-84986766 | Msa0479830:intron | 45.0% | |
| CCCATATACCTAATGCCGTA+AGG | - | chr3_3:84986803-84986822 | Msa0479830:intron | 45.0% | |
| ACGTTACGGAGAGCAATAAC+GGG | + | chr3_3:84986883-84986902 | None:intergenic | 45.0% | |
| !! | CTTATTTTCTCATCGGCTGC+AGG | - | chr3_3:84986959-84986978 | Msa0479830:intron | 45.0% |
| TGGAGAGCTGTTATCAGACT+AGG | - | chr3_3:84986985-84987004 | Msa0479830:intron | 45.0% | |
| AGAGCTGTTATCAGACTAGG+TGG | - | chr3_3:84986988-84987007 | Msa0479830:intron | 45.0% | |
| CTGCACCATGCGTTCTTATT+GGG | + | chr3_3:84987132-84987151 | None:intergenic | 45.0% | |
| ACTGCACCATGCGTTCTTAT+TGG | + | chr3_3:84987133-84987152 | None:intergenic | 45.0% | |
| ATAAGAACGCATGGTGCAGT+TGG | - | chr3_3:84987133-84987152 | Msa0479830:intron | 45.0% | |
| !! | CTTTAGGGCAACACAGGTAT+CGG | + | chr3_3:84987195-84987214 | None:intergenic | 45.0% |
| ! | CCAAGTCTTATCACGCTAGA+TGG | + | chr3_3:84987259-84987278 | None:intergenic | 45.0% |
| CCATCTAGCGTGATAAGACT+TGG | - | chr3_3:84987256-84987275 | Msa0479830:CDS | 45.0% | |
| AGGTAACTGCATCGAAGTTG+TGG | - | chr3_3:84987468-84987487 | Msa0479830:CDS | 45.0% | |
| TAACTGCATCGAAGTTGTGG+CGG | - | chr3_3:84987471-84987490 | Msa0479830:CDS | 45.0% | |
| ACAGCAGAAATGCGAGATGA+CGG | + | chr3_3:84987573-84987592 | None:intergenic | 45.0% | |
| GCCTCTATATCACCATCTCA+TGG | - | chr3_3:84987913-84987932 | Msa0479830:CDS | 45.0% | |
| GCCATGAGATGGTGATATAG+AGG | + | chr3_3:84987917-84987936 | None:intergenic | 45.0% | |
| TGTCCTTGTGACAGAACTTC+TGG | - | chr3_3:84987943-84987962 | Msa0479830:CDS | 45.0% | |
| ATCAGGCAAGTGGCTAGAAA+AGG | + | chr3_3:84988054-84988073 | None:intergenic | 45.0% | |
| GAAACAGAAGATCAGGCAAG+TGG | + | chr3_3:84988064-84988083 | None:intergenic | 45.0% | |
| TTTCCACACTCGATGGTTGA+TGG | + | chr3_3:84988190-84988209 | None:intergenic | 45.0% | |
| ACCATCGAGTGTGGAAAAAG+AGG | - | chr3_3:84988193-84988212 | Msa0479830:intron | 45.0% | |
| ! | ACCTCTTTTTCCACACTCGA+TGG | + | chr3_3:84988197-84988216 | None:intergenic | 45.0% |
| TCAAACCCATTCCACGACAA+AGG | + | chr3_3:84988305-84988324 | None:intergenic | 45.0% | |
| ! | AGCACTGTTGGCTACTCTAT+TGG | + | chr3_3:84988911-84988930 | None:intergenic | 45.0% |
| AATAGAGTAGCCAACAGTGC+TGG | - | chr3_3:84988910-84988929 | Msa0479830:intron | 45.0% | |
| GATGTGATATCCAGCACTGT+TGG | + | chr3_3:84988923-84988942 | None:intergenic | 45.0% | |
| GCCATGCTGATAAATGCAGA+TGG | - | chr3_3:84988951-84988970 | Msa0479830:intron | 45.0% | |
| CCCATCTGCATTTATCAGCA+TGG | + | chr3_3:84988955-84988974 | None:intergenic | 45.0% | |
| CTGATAAATGCAGATGGGTG+TGG | - | chr3_3:84988957-84988976 | Msa0479830:intron | 45.0% | |
| ! | ATTTTGCCGGAGATAACCAG+CGG | + | chr3_3:84989025-84989044 | None:intergenic | 45.0% |
| CTCCGGCAAAATGAAAAGCA+AGG | - | chr3_3:84989033-84989052 | Msa0479830:intron | 45.0% | |
| AGTCAGCTGTTAAGGTCTGT+TGG | - | chr3_3:84989196-84989215 | Msa0479830:intron | 45.0% | |
| GTCAGCTGTTAAGGTCTGTT+GGG | - | chr3_3:84989197-84989216 | Msa0479830:intron | 45.0% | |
| ACAAAGAACACCGTCTGGTA+TGG | - | chr3_3:84989457-84989476 | Msa0479830:intron | 45.0% | |
| GACAGAGCTGCAAACATAGA+AGG | - | chr3_3:84989482-84989501 | Msa0479830:intron | 45.0% | |
| CTGCAAACATAGAAGGAGAC+AGG | - | chr3_3:84989489-84989508 | Msa0479830:intron | 45.0% | |
| GAGACAGGCAGTTAAGTTAC+TGG | - | chr3_3:84989504-84989523 | Msa0479830:intron | 45.0% | |
| AATGAAGGGAACTCACATGG+GGG | + | chr3_3:84989617-84989636 | None:intergenic | 45.0% | |
| AACCTTAAGAGCAGTCTCCA+AGG | + | chr3_3:84989820-84989839 | None:intergenic | 45.0% | |
| ! | CACAGAGCAAATGTGGATTG+GGG | - | chr3_3:84989884-84989903 | Msa0479830:intron | 45.0% |
| TGCCACCTTGGAATTTGGTT+GGG | + | chr3_3:84990156-84990175 | None:intergenic | 45.0% | |
| ATGCCACCTTGGAATTTGGT+TGG | + | chr3_3:84990157-84990176 | None:intergenic | 45.0% | |
| GATAGACTTTGATGCCACCT+TGG | + | chr3_3:84990168-84990187 | None:intergenic | 45.0% | |
| ! | ACAGATGACCCAAAGCATCT+TGG | + | chr3_3:84990190-84990209 | None:intergenic | 45.0% |
| ! | GCTTTGGGTCATCTGTTATC+GGG | - | chr3_3:84990194-84990213 | Msa0479830:intron | 45.0% |
| TGATCTTCACCCAATCAGCT+GGG | + | chr3_3:84990343-84990362 | None:intergenic | 45.0% | |
| TTGATCTTCACCCAATCAGC+TGG | + | chr3_3:84990344-84990363 | None:intergenic | 45.0% | |
| TTGGGTGAAGATCAATGTGC+GGG | - | chr3_3:84990349-84990368 | Msa0479830:intron | 45.0% | |
| GAAGATCAATGTGCGGGAAA+CGG | - | chr3_3:84990355-84990374 | Msa0479830:intron | 45.0% | |
| CTAGCGATGCCGAAATTACT+AGG | - | chr3_3:84990677-84990696 | Msa0479830:intron | 45.0% | |
| CGATGCCGAAATTACTAGGT+TGG | - | chr3_3:84990681-84990700 | Msa0479830:intron | 45.0% | |
| AACTCACAGTCACAACTGTG+AGG | + | chr3_3:84990735-84990754 | None:intergenic | 45.0% | |
| !!! | TACTGAGCTGTTTTGGCTGT+TGG | - | chr3_3:84990967-84990986 | Msa0479830:intron | 45.0% |
| AACAAGTCGTCCAACTGGAT+CGG | + | chr3_3:84991338-84991357 | None:intergenic | 45.0% | |
| GGGTATTACCCCCTTCAAAA+AGG | - | chr3_3:84991393-84991412 | Msa0479830:intron | 45.0% | |
| ACAACAGCAGATGTTTGGAG+TGG | + | chr3_3:84991654-84991673 | None:intergenic | 45.0% | |
| TTTCCTCCCCGGAAAATGAT+TGG | - | chr3_3:84991731-84991750 | Msa0479830:intron | 45.0% | |
| ! | AAACCAATCATTTTCCGGGG+AGG | + | chr3_3:84991737-84991756 | None:intergenic | 45.0% |
| GCATATTGCACCAGTGCATT+TGG | + | chr3_3:84991899-84991918 | None:intergenic | 45.0% | |
| ! | ATGCACTGGTGCAATATGCT+TGG | - | chr3_3:84991900-84991919 | Msa0479830:intron | 45.0% |
| !! | TATTAAAAAATATAACTTTA+GGG | + | chr3_3:84987210-84987229 | None:intergenic | 5.0% |
| !! | TTATTAAAAAATATAACTTT+AGG | + | chr3_3:84987211-84987230 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAATCAATTTAA+AGG | + | chr3_3:84990449-84990468 | None:intergenic | 5.0% |
| AGAGAAAGAAGAGTGAGCCG+TGG | - | chr3_3:84985818-84985837 | Msa0479830:three_prime_UTR | 50.0% | |
| CTTGGGAGGCTTGAATTCCA+AGG | + | chr3_3:84986600-84986619 | None:intergenic | 50.0% | |
| ! | CCGCCAATTCACAGTTGATG+TGG | + | chr3_3:84986750-84986769 | None:intergenic | 50.0% |
| !! | GTTTTAGGTGGAGATGTGGG+TGG | - | chr3_3:84986825-84986844 | Msa0479830:intron | 50.0% |
| ! | TTCTCATCGGCTGCAGGTTA+TGG | - | chr3_3:84986965-84986984 | Msa0479830:intron | 50.0% |
| CAGACTAGGTGGCTATGAAG+TGG | - | chr3_3:84986999-84987018 | Msa0479830:intron | 50.0% | |
| TCTTTCCACCCTCCCAAGTA+AGG | - | chr3_3:84987506-84987525 | Msa0479830:intron | 50.0% | |
| CAGCAGAAATGCGAGATGAC+GGG | + | chr3_3:84987572-84987591 | None:intergenic | 50.0% | |
| AGACTGTAGTGCAAGTCCTG+TGG | + | chr3_3:84987751-84987770 | None:intergenic | 50.0% | |
| GGACTTGCACTACAGTCTCA+TGG | - | chr3_3:84987753-84987772 | Msa0479830:intron | 50.0% | |
| GGACAACTCATGCCATGAGA+TGG | + | chr3_3:84987928-84987947 | None:intergenic | 50.0% | |
| !! | TGGTTGATGGAGTGATCCGA+CGG | + | chr3_3:84988177-84988196 | None:intergenic | 50.0% |
| ACTCCATCAACCATCGAGTG+TGG | - | chr3_3:84988184-84988203 | Msa0479830:intron | 50.0% | |
| TAACCAGCGGTCTAGACAAG+AGG | + | chr3_3:84989012-84989031 | None:intergenic | 50.0% | |
| ! | TCTAGACCGCTGGTTATCTC+CGG | - | chr3_3:84989016-84989035 | Msa0479830:intron | 50.0% |
| GGTTCCTGAGTCAGCTGTTA+AGG | - | chr3_3:84989188-84989207 | Msa0479830:intron | 50.0% | |
| ! | CAGACCTTAACAGCTGACTC+AGG | + | chr3_3:84989195-84989214 | None:intergenic | 50.0% |
| GCTCTGTCATCCATACCAGA+CGG | + | chr3_3:84989470-84989489 | None:intergenic | 50.0% | |
| GTCCTTGGAGACTGCTCTTA+AGG | - | chr3_3:84989815-84989834 | Msa0479830:intron | 50.0% | |
| GACCCAACCAAATTCCAAGG+TGG | - | chr3_3:84990151-84990170 | Msa0479830:intron | 50.0% | |
| !! | TAGGTTGGTCACAGCAGTAG+TGG | - | chr3_3:84990307-84990326 | Msa0479830:CDS | 50.0% |
| !! | GTCACAGCAGTAGTGGACAT+TGG | - | chr3_3:84990314-84990333 | Msa0479830:CDS | 50.0% |
| ATCTTCACCCAATCAGCTGG+GGG | + | chr3_3:84990341-84990360 | None:intergenic | 50.0% | |
| GATCTTCACCCAATCAGCTG+GGG | + | chr3_3:84990342-84990361 | None:intergenic | 50.0% | |
| CAGAGGTTACCTCTTCACGA+AGG | + | chr3_3:84990541-84990560 | None:intergenic | 50.0% | |
| ! | TAGGTTGGACAACTTCACCC+AGG | - | chr3_3:84990696-84990715 | Msa0479830:intron | 50.0% |
| ACTTCACCCAGGTTCAAACC+CGG | - | chr3_3:84990707-84990726 | Msa0479830:intron | 50.0% | |
| ! | AGTCACAACTGTGAGGTACC+GGG | + | chr3_3:84990728-84990747 | None:intergenic | 50.0% |
| CAGTCACAACTGTGAGGTAC+CGG | + | chr3_3:84990729-84990748 | None:intergenic | 50.0% | |
| ! | TTTGGGGTATGTAGGCGAAG+TGG | + | chr3_3:84990771-84990790 | None:intergenic | 50.0% |
| TTGAAGGGGGTAATACCCCA+TGG | + | chr3_3:84991391-84991410 | None:intergenic | 50.0% | |
| TCGCAGGTAAGTTCACAACC+TGG | + | chr3_3:84991623-84991642 | None:intergenic | 50.0% | |
| TGGAGTGGATCAATTCTCGC+AGG | + | chr3_3:84991639-84991658 | None:intergenic | 50.0% | |
| ! | GCTGTGTGAATTTTCCTCCC+CGG | - | chr3_3:84991720-84991739 | Msa0479830:intron | 50.0% |
| ! | AGGAACTAGTCTAGCCCTGT+TGG | - | chr3_3:84991814-84991833 | Msa0479830:five_prime_UTR | 50.0% |
| AAGAAGAGTGAGCCGTGGAG+AGG | - | chr3_3:84985823-84985842 | Msa0479830:three_prime_UTR | 55.0% | |
| TGATGAAGCCGGTACGCCTA+TGG | - | chr3_3:84986526-84986545 | Msa0479830:intron | 55.0% | |
| TTCTCGCTCCATAGGCGTAC+CGG | + | chr3_3:84986537-84986556 | None:intergenic | 55.0% | |
| GGTGGTGTCTTCCTCTCTTG+TGG | - | chr3_3:84986843-84986862 | Msa0479830:intron | 55.0% | |
| TCGAAGTTGTGGCGGTCAGT+AGG | - | chr3_3:84987479-84987498 | Msa0479830:CDS | 55.0% | |
| CTAGTCCTTACTTGGGAGGG+TGG | + | chr3_3:84987514-84987533 | None:intergenic | 55.0% | |
| ! | GTTGATGGAGTGATCCGACG+GGG | + | chr3_3:84988175-84988194 | None:intergenic | 55.0% |
| !! | GGTTGATGGAGTGATCCGAC+GGG | + | chr3_3:84988176-84988195 | None:intergenic | 55.0% |
| TATTGCTCTTTGCCCCCCTC+TGG | - | chr3_3:84988222-84988241 | Msa0479830:intron | 55.0% | |
| AAGCCTCTTGTCTAGACCGC+TGG | - | chr3_3:84989006-84989025 | Msa0479830:intron | 55.0% | |
| ACCGCTGTTTATCAGGCTCC+AGG | - | chr3_3:84989087-84989106 | Msa0479830:intron | 55.0% | |
| GCCTGGAGCCTGATAAACAG+CGG | + | chr3_3:84989091-84989110 | None:intergenic | 55.0% | |
| GTTTATCAGGCTCCAGGCTC+AGG | - | chr3_3:84989093-84989112 | Msa0479830:intron | 55.0% | |
| CTGCACGTGCAATGCAAGGT+TGG | - | chr3_3:84989136-84989155 | Msa0479830:intron | 55.0% | |
| TTGGCATGCTCAGCGCCTTA+TGG | - | chr3_3:84989155-84989174 | Msa0479830:intron | 55.0% | |
| TGGCATGCTCAGCGCCTTAT+GGG | - | chr3_3:84989156-84989175 | Msa0479830:intron | 55.0% | |
| GCTCAGCGCCTTATGGGATA+CGG | - | chr3_3:84989162-84989181 | Msa0479830:intron | 55.0% | |
| GAACCTCGCCGTATCCCATA+AGG | + | chr3_3:84989173-84989192 | None:intergenic | 55.0% | |
| GGGGATGCACAAAATCGCTC+TGG | + | chr3_3:84989757-84989776 | None:intergenic | 55.0% | |
| TGGACAGGGGCAGTACCAAT+GGG | + | chr3_3:84989783-84989802 | None:intergenic | 55.0% | |
| ATGGACAGGGGCAGTACCAA+TGG | + | chr3_3:84989784-84989803 | None:intergenic | 55.0% | |
| ACATTGGACCCCCAGCTGAT+TGG | - | chr3_3:84990330-84990349 | Msa0479830:CDS | 55.0% | |
| CATTGGACCCCCAGCTGATT+GGG | - | chr3_3:84990331-84990350 | Msa0479830:CDS | 55.0% | |
| ATGTGCGGGAAACGGTCAGT+CGG | - | chr3_3:84990363-84990382 | Msa0479830:intron | 55.0% | |
| !! | GAGGTACCGGGTTTGAACCT+GGG | + | chr3_3:84990716-84990735 | None:intergenic | 55.0% |
| !! | TGAGGTACCGGGTTTGAACC+TGG | + | chr3_3:84990717-84990736 | None:intergenic | 55.0% |
| GTCGTCCAACTGGATCGGAT+TGG | + | chr3_3:84991333-84991352 | None:intergenic | 55.0% | |
| TGTACGCGTTCCTTTCGAGC+AGG | - | chr3_3:84991695-84991714 | Msa0479830:intron | 55.0% | |
| GTACGCGTTCCTTTCGAGCA+GGG | - | chr3_3:84991696-84991715 | Msa0479830:intron | 55.0% | |
| AAGAGTGAGCCGTGGAGAGG+TGG | - | chr3_3:84985826-84985845 | Msa0479830:three_prime_UTR | 60.0% | |
| TCAGCAGCTCCACCTCTCCA+CGG | + | chr3_3:84985838-84985857 | None:intergenic | 60.0% | |
| TCATCAGCAGCAGCAGCAGC+AGG | + | chr3_3:84986300-84986319 | None:intergenic | 60.0% | |
| ATCAGGCTCCAGGCTCAGGT+AGG | - | chr3_3:84989097-84989116 | Msa0479830:intron | 60.0% | |
| TCAGGCTCCAGGCTCAGGTA+GGG | - | chr3_3:84989098-84989117 | Msa0479830:intron | 60.0% | |
| TTGTGCATCCCCCCACCCAT+TGG | - | chr3_3:84989765-84989784 | Msa0479830:intron | 60.0% | |
| AGGGGCAGTACCAATGGGTG+GGG | + | chr3_3:84989778-84989797 | None:intergenic | 60.0% | |
| CAGGGGCAGTACCAATGGGT+GGG | + | chr3_3:84989779-84989798 | None:intergenic | 60.0% | |
| ACAGGGGCAGTACCAATGGG+TGG | + | chr3_3:84989780-84989799 | None:intergenic | 60.0% | |
| CGGGAAACGGTCAGTCGGTT+TGG | - | chr3_3:84990368-84990387 | Msa0479830:intron | 60.0% | |
| TCCTGGGCTCCTTCGTGAAG+AGG | - | chr3_3:84990529-84990548 | Msa0479830:intron | 60.0% | |
| ACCTCTTCACGAAGGAGCCC+AGG | + | chr3_3:84990533-84990552 | None:intergenic | 60.0% | |
| TCGGCATCGCTAGTTGCGCT+AGG | + | chr3_3:84990670-84990689 | None:intergenic | 60.0% | |
| ! | GATCGGATTGGACCCGTACC+TGG | + | chr3_3:84991321-84991340 | None:intergenic | 60.0% |
| CGGGTCCAATCCGATCCAGT+TGG | - | chr3_3:84991325-84991344 | Msa0479830:intron | 60.0% | |
| CACACAGCTCCCTGCTCGAA+AGG | + | chr3_3:84991708-84991727 | None:intergenic | 60.0% | |
| GGGGAGTTACAGCTCCCCGT+CGG | - | chr3_3:84988158-84988177 | Msa0479830:intron | 65.0% | |
| GCGGCTGCACGTGCAATGCA+AGG | - | chr3_3:84989132-84989151 | Msa0479830:intron | 65.0% | |
| GCGCCTTATGGGATACGGCG+AGG | - | chr3_3:84989167-84989186 | Msa0479830:intron | 65.0% | |
| GGGCAGTACCAATGGGTGGG+GGG | + | chr3_3:84989776-84989795 | None:intergenic | 65.0% | |
| GGGGCAGTACCAATGGGTGG+GGG | + | chr3_3:84989777-84989796 | None:intergenic | 65.0% | |
| CTCCAGGCTCAGGTAGGGCG+CGG | - | chr3_3:84989103-84989122 | Msa0479830:intron | 70.0% | |
| AGGCTCAGGTAGGGCGCGGA+GGG | - | chr3_3:84989107-84989126 | Msa0479830:intron | 70.0% | |
| AGGTAGGGCGCGGAGGGATG+CGG | - | chr3_3:84989113-84989132 | Msa0479830:intron | 70.0% | |
| CTCCGCGCCCTACCTGAGCC+TGG | + | chr3_3:84989108-84989127 | None:intergenic | 75.0% | |
| CAGGCTCAGGTAGGGCGCGG+AGG | - | chr3_3:84989106-84989125 | Msa0479830:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84985812 | 84992010 | 84985812 | ID=Msa0479830;Name=Msa0479830 |
| chr3_3 | mRNA | 84985812 | 84992010 | 84985812 | ID=Msa0479830-mRNA-1;Parent=Msa0479830;Name=Msa0479830-mRNA-1;_AED=0.24;_eAED=0.24;_QI=257|0.8|0.81|1|0.73|0.75|16|282|433 |
| chr3_3 | exon | 84985812 | 84986198 | 84985812 | ID=Msa0479830-mRNA-1:exon:24292;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84986408 | 84986500 | 84986408 | ID=Msa0479830-mRNA-1:exon:24291;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84987224 | 84987322 | 84987224 | ID=Msa0479830-mRNA-1:exon:24290;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84987446 | 84987512 | 84987446 | ID=Msa0479830-mRNA-1:exon:24289;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84987894 | 84988007 | 84987894 | ID=Msa0479830-mRNA-1:exon:24288;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84988297 | 84988378 | 84988297 | ID=Msa0479830-mRNA-1:exon:24287;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84988456 | 84988507 | 84988456 | ID=Msa0479830-mRNA-1:exon:24286;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84988613 | 84988735 | 84988613 | ID=Msa0479830-mRNA-1:exon:24285;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84989608 | 84989700 | 84989608 | ID=Msa0479830-mRNA-1:exon:24284;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84990023 | 84990068 | 84990023 | ID=Msa0479830-mRNA-1:exon:24283;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84990300 | 84990352 | 84990300 | ID=Msa0479830-mRNA-1:exon:24282;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84990802 | 84990841 | 84990802 | ID=Msa0479830-mRNA-1:exon:24281;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84991174 | 84991307 | 84991174 | ID=Msa0479830-mRNA-1:exon:24280;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84991397 | 84991607 | 84991397 | ID=Msa0479830-mRNA-1:exon:24279;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84991738 | 84991896 | 84991738 | ID=Msa0479830-mRNA-1:exon:24278;Parent=Msa0479830-mRNA-1 |
| chr3_3 | exon | 84991923 | 84992010 | 84991923 | ID=Msa0479830-mRNA-1:exon:24277;Parent=Msa0479830-mRNA-1 |
| chr3_3 | five_prime_UTR | 84991923 | 84992010 | 84991923 | ID=Msa0479830-mRNA-1:five_prime_utr;Parent=Msa0479830-mRNA-1 |
| chr3_3 | five_prime_UTR | 84991738 | 84991896 | 84991738 | ID=Msa0479830-mRNA-1:five_prime_utr;Parent=Msa0479830-mRNA-1 |
| chr3_3 | five_prime_UTR | 84991598 | 84991607 | 84991598 | ID=Msa0479830-mRNA-1:five_prime_utr;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84991397 | 84991597 | 84991397 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84991174 | 84991307 | 84991174 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84990802 | 84990841 | 84990802 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84990300 | 84990352 | 84990300 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84990023 | 84990068 | 84990023 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84989608 | 84989700 | 84989608 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84988613 | 84988735 | 84988613 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84988456 | 84988507 | 84988456 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84988297 | 84988378 | 84988297 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84987894 | 84988007 | 84987894 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84987446 | 84987512 | 84987446 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84987224 | 84987322 | 84987224 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84986408 | 84986500 | 84986408 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | CDS | 84986094 | 84986198 | 84986094 | ID=Msa0479830-mRNA-1:cds;Parent=Msa0479830-mRNA-1 |
| chr3_3 | three_prime_UTR | 84985812 | 84986093 | 84985812 | ID=Msa0479830-mRNA-1:three_prime_utr;Parent=Msa0479830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
