Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480520 | XP_003618007.1 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480520 | G7K4Z3 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0480520 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480520 | MtrunA17_Chr5g0447971 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Msa0480520 | MtrunA17_Chr3g0086321 | 69.737 | 228 | 65 | 1 | 333 | 556 | 166 | 393 | 2.99e-102 | 313 |
| Msa0480520 | MtrunA17_Chr3g0086321 | 42.442 | 344 | 144 | 10 | 65 | 392 | 80 | 385 | 7.94e-60 | 203 |
| Msa0480520 | MtrunA17_Chr3g0086321 | 30.942 | 223 | 120 | 4 | 269 | 458 | 166 | 387 | 3.57e-15 | 77.8 |
| Msa0480520 | MtrunA17_Chr3g0086321 | 29.518 | 166 | 93 | 3 | 385 | 548 | 82 | 225 | 8.88e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480520 | AT5G61190.4 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 4.63e-12 | 69.3 |
| Msa0480520 | AT5G61190.4 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.45e-11 | 67.8 |
| Msa0480520 | AT5G61190.2 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 4.63e-12 | 69.3 |
| Msa0480520 | AT5G61190.2 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.45e-11 | 67.8 |
| Msa0480520 | AT5G61190.10 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 4.86e-12 | 69.3 |
| Msa0480520 | AT5G61190.10 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.63e-11 | 67.8 |
| Msa0480520 | AT5G61190.1 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 5.69e-12 | 69.3 |
| Msa0480520 | AT5G61190.1 | 27.189 | 217 | 104 | 9 | 365 | 546 | 298 | 495 | 7.98e-11 | 65.5 |
| Msa0480520 | AT5G61190.7 | 27.128 | 188 | 106 | 5 | 361 | 548 | 146 | 302 | 6.07e-12 | 69.3 |
| Msa0480520 | AT5G61190.7 | 27.315 | 216 | 113 | 9 | 365 | 546 | 204 | 409 | 1.76e-11 | 67.8 |
| Msa0480520 | AT5G61190.3 | 27.128 | 188 | 106 | 5 | 361 | 548 | 146 | 302 | 6.07e-12 | 69.3 |
| Msa0480520 | AT5G61190.3 | 27.315 | 216 | 113 | 9 | 365 | 546 | 204 | 409 | 1.76e-11 | 67.8 |
| Msa0480520 | AT5G61190.11 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 6.45e-12 | 68.9 |
| Msa0480520 | AT5G61190.11 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.82e-11 | 67.8 |
| Msa0480520 | AT5G61190.8 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 6.55e-12 | 68.9 |
| Msa0480520 | AT5G61190.8 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.20e-11 | 67.4 |
| Msa0480520 | AT5G61190.5 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 6.79e-12 | 68.9 |
| Msa0480520 | AT5G61190.5 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.20e-11 | 67.4 |
| Msa0480520 | AT5G61190.6 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 7.15e-12 | 68.9 |
| Msa0480520 | AT5G61190.6 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.35e-11 | 67.4 |
| Msa0480520 | AT5G61190.9 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 7.69e-12 | 68.9 |
| Msa0480520 | AT5G61190.9 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.71e-11 | 67.0 |
Find 113 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 3_3:+85861377 | Msa0480520:CDS |
| CGCGCAGAAGGCAAACTTGC+AGG | 0.304037 | 3_3:-85861347 | None:intergenic |
| ATACTATCAACCTGTTTCTT+AGG | 0.309233 | 3_3:-85861641 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.309844 | 3_3:-85861260 | None:intergenic |
| CTTCTGCGCGTAATGGTTCC+TGG | 0.318364 | 3_3:+85861360 | Msa0480520:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 3_3:-85861707 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 3_3:-85861899 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 3_3:-85862091 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 3_3:-85862187 | None:intergenic |
| TCCAATGCTTCTAATATTGC+AGG | 0.326872 | 3_3:+85861118 | None:intergenic |
| CCGCTGCCAACACCGACTTT+TGG | 0.333602 | 3_3:-85863860 | None:intergenic |
| ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | 3_3:+85863899 | Msa0480520:CDS |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | 3_3:-85864099 | None:intergenic |
| ATCCACGGTCAAGCGTTAAT+TGG | 0.351888 | 3_3:+85861596 | Msa0480520:CDS |
| ATCCAAGGACAAGCATTAAT+TGG | 0.360680 | 3_3:+85862142 | Msa0480520:CDS |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 3_3:-85863819 | None:intergenic |
| GGCTCTGATTGCTCGCGTAC+AGG | 0.361042 | 3_3:-85861620 | None:intergenic |
| ACAATCAGAGCCTGCGAAAC+AGG | 0.362586 | 3_3:+85861793 | Msa0480520:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | 3_3:+85861950 | Msa0480520:CDS |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 3_3:+85861292 | Msa0480520:CDS |
| TGAACAGAAGGCAAACTTGC+AGG | 0.371807 | 3_3:-85861173 | None:intergenic |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 3_3:+85862192 | Msa0480520:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 3_3:+85861758 | Msa0480520:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 3_3:+85861854 | Msa0480520:CDS |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 3_3:-85861693 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 3_3:-85862077 | None:intergenic |
| TTTCGTAGGCTCTGATTGTT+CGG | 0.392564 | 3_3:-85861981 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393012 | 3_3:-85861686 | None:intergenic |
| GGCTCTGATTGTTCGGCTGC+AGG | 0.400148 | 3_3:-85862070 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 3_3:+85861631 | Msa0480520:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 3_3:-85861427 | None:intergenic |
| GGCTCTGATTGTTCTGCTAC+AGG | 0.410383 | 3_3:-85862166 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 3_3:-85861432 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 3_3:-85861378 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | 3_3:-85861206 | None:intergenic |
| ACTACCACCACCACCGCAAT+AGG | 0.416616 | 3_3:+85863887 | Msa0480520:CDS |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.423574 | 3_3:-85861974 | None:intergenic |
| GCCTGCAATATTAGAAGCAT+TGG | 0.428224 | 3_3:-85861119 | None:intergenic |
| ACAATCAGAGCCTACGAAAC+AGG | 0.430644 | 3_3:+85861985 | Msa0480520:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.432492 | 3_3:+85862177 | Msa0480520:CDS |
| GGCTCTGATTGTTCAGCTAC+AGG | 0.438343 | 3_3:-85861878 | None:intergenic |
| GGTGAGTATTTAAATTTGCC+TGG | 0.438482 | 3_3:-85864069 | None:intergenic |
| GGCTCTGATTGTTCGGCGAC+AGG | 0.441022 | 3_3:-85861782 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 3_3:+85861697 | Msa0480520:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 3_3:+85862081 | Msa0480520:CDS |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | 3_3:-85863654 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.446022 | 3_3:+85861889 | Msa0480520:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 3_3:-85861760 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 3_3:-85861856 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 3_3:-85861952 | None:intergenic |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | 3_3:+85862253 | Msa0480520:CDS |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | 3_3:+85863800 | Msa0480520:CDS |
| GACCAATTAATGCTTGTCCT+TGG | 0.466602 | 3_3:-85862144 | None:intergenic |
| GACAAATTAACACTTGTCCT+TGG | 0.467410 | 3_3:-85862048 | None:intergenic |
| TTTCGCAGGCTCTGATTGTT+CGG | 0.469070 | 3_3:-85861789 | None:intergenic |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 3_3:-85863690 | None:intergenic |
| AGTTTGCCTTCTGCGCGTAA+TGG | 0.472468 | 3_3:+85861353 | Msa0480520:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | 3_3:+85861299 | Msa0480520:CDS |
| GCTCTGATTGCTCGCGTACA+GGG | 0.481346 | 3_3:-85861619 | None:intergenic |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | 3_3:-85861293 | None:intergenic |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 3_3:-85861422 | None:intergenic |
| CCGCAATAGGCACTTCAATT+GGG | 0.497753 | 3_3:+85863900 | Msa0480520:CDS |
| TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | 3_3:-85863885 | None:intergenic |
| CGCTTGAGTTCGGCAACAGA+TGG | 0.499244 | 3_3:-85863680 | None:intergenic |
| GACAGAGAAACGTAAAGCTA+TGG | 0.509221 | 3_3:+85863985 | Msa0480520:CDS |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 3_3:+85861179 | Msa0480520:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | 3_3:+85862254 | Msa0480520:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | 3_3:+85863907 | Msa0480520:CDS |
| TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | 3_3:-85863894 | None:intergenic |
| ACAAAATCAACCTGTTTCGC+AGG | 0.519194 | 3_3:-85861803 | None:intergenic |
| ATACAAGGACAAGCGTTGAT+TGG | 0.519587 | 3_3:+85861662 | Msa0480520:CDS |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | 3_3:-85864090 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 3_3:+85864105 | Msa0480520:CDS |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 3_3:-85861272 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 3_3:+85864109 | Msa0480520:CDS |
| CCAAAAGTCGGTGTTGGCAG+CGG | 0.544449 | 3_3:+85863860 | Msa0480520:CDS |
| AAACGTAAAGCTATGGAAAG+AGG | 0.547369 | 3_3:+85863992 | Msa0480520:CDS |
| CTTCTAATATTGCAGGCTGT+CGG | 0.548494 | 3_3:+85861125 | Msa0480520:CDS |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 3_3:+85863724 | Msa0480520:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 3_3:+85862273 | Msa0480520:CDS |
| TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | 3_3:+85863741 | Msa0480520:CDS |
| ACAGAATCAACCTGTTTCGT+AGG | 0.566760 | 3_3:-85861995 | None:intergenic |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 3_3:+85864121 | Msa0480520:CDS |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | 3_3:+85864096 | Msa0480520:CDS |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | 3_3:-85861185 | None:intergenic |
| AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | 3_3:-85863891 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 3_3:+85861266 | Msa0480520:CDS |
| TGGTGTGACGAACCAACAGC+CGG | 0.583490 | 3_3:-85861311 | None:intergenic |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 3_3:+85864051 | Msa0480520:CDS |
| AAACAGGTTGATAGTATACA+AGG | 0.585879 | 3_3:+85861647 | Msa0480520:CDS |
| TCAGATCCAAAAGTCGGTGT+TGG | 0.587240 | 3_3:+85863854 | Msa0480520:CDS |
| CAGGAACCATTACGCGCAGA+AGG | 0.591477 | 3_3:-85861359 | None:intergenic |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 3_3:+85863650 | Msa0480520:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 3_3:+85864127 | Msa0480520:CDS |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 3_3:+85864110 | Msa0480520:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 3_3:+85863656 | Msa0480520:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 3_3:+85861743 | Msa0480520:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 3_3:+85861839 | Msa0480520:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 3_3:+85862031 | Msa0480520:CDS |
| TTGCAGGCGCTGCTGAAGTG+TGG | 0.623480 | 3_3:-85861331 | None:intergenic |
| ACGTGCAATGTTGTATGCGT+TGG | 0.626948 | 3_3:+85862223 | Msa0480520:CDS |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 3_3:+85863940 | Msa0480520:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | 3_3:-85863900 | None:intergenic |
| ACTGACACAAGTAATATCCA+AGG | 0.644465 | 3_3:+85861935 | Msa0480520:CDS |
| AAACTGTCAGATCCAAAAGT+CGG | 0.650475 | 3_3:+85863848 | Msa0480520:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 3_3:+85863823 | Msa0480520:CDS |
| AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | 3_3:-85863897 | None:intergenic |
| GTTGCCGAACTCAAGCGTAA+CGG | 0.668233 | 3_3:+85863686 | Msa0480520:CDS |
| ACTGACACAAGTAGTATCCA+CGG | 0.668670 | 3_3:+85861581 | Msa0480520:CDS |
| GGCCAATTAACGCTTGACCG+TGG | 0.678744 | 3_3:-85861598 | None:intergenic |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 3_3:+85863943 | Msa0480520:CDS |
| ACTGACGCAAGTAAGATCCA+AGG | 0.688816 | 3_3:+85862127 | Msa0480520:CDS |
| AATGTGCACTTTATGCAATG+TGG | 0.705637 | 3_3:+85864036 | Msa0480520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTATTTATTTTGC+TGG | + | chr3_3:85863107-85863126 | Msa0480520:intron | 15.0% |
| !! | TTCAAAGATTATATATAGTT+TGG | - | chr3_3:85863196-85863215 | None:intergenic | 15.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | - | chr3_3:85862362-85862381 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATGTAAGACA+TGG | - | chr3_3:85862444-85862463 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGTATAACTGT+GGG | + | chr3_3:85862604-85862623 | Msa0480520:intron | 20.0% |
| !! | GGACAAAATTTTATCTTGAT+TGG | + | chr3_3:85862492-85862511 | Msa0480520:intron | 25.0% |
| !! | GTGAATATTTTGTATAACTG+TGG | + | chr3_3:85862603-85862622 | Msa0480520:intron | 25.0% |
| !!! | ATGTAGCTTTTGAAAAATCA+CGG | - | chr3_3:85862653-85862672 | None:intergenic | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | - | chr3_3:85862709-85862728 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTGTGTTT+CGG | + | chr3_3:85862862-85862881 | Msa0480520:intron | 25.0% |
| !!! | ATTTGTATTTTTAGTGACCT+TGG | + | chr3_3:85863405-85863424 | Msa0480520:intron | 25.0% |
| !! | TGAACTGTAAGAAAAGTATA+AGG | + | chr3_3:85863574-85863593 | Msa0480520:intron | 25.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | - | chr3_3:85863607-85863626 | None:intergenic | 25.0% |
| AACACAAAAAGAATTTGCAG+CGG | + | chr3_3:85861519-85861538 | Msa0480520:CDS | 30.0% | |
| ! | ATACTATCAACCTGTTTCTT+AGG | - | chr3_3:85861644-85861663 | None:intergenic | 30.0% |
| !! | AAACAGGTTGATAGTATACA+AGG | + | chr3_3:85861647-85861666 | Msa0480520:CDS | 30.0% |
| ACATATAACAAACATGTTGC+TGG | + | chr3_3:85862253-85862272 | Msa0480520:CDS | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | + | chr3_3:85862254-85862273 | Msa0480520:CDS | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | + | chr3_3:85862471-85862490 | Msa0480520:intron | 30.0% | |
| !!! | TTACATGCATTTTAGCTGAA+TGG | - | chr3_3:85862570-85862589 | None:intergenic | 30.0% |
| ATTCAGCTAAAATGCATGTA+AGG | + | chr3_3:85862569-85862588 | Msa0480520:intron | 30.0% | |
| GAAAATAAGAGAATCTTGGT+GGG | - | chr3_3:85862705-85862724 | None:intergenic | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | - | chr3_3:85862706-85862725 | None:intergenic | 30.0% | |
| !! | GTATTCTAGTTCAAACTAGT+TGG | + | chr3_3:85862735-85862754 | Msa0480520:intron | 30.0% |
| GTAAGGAAAAAATCGTTGTT+CGG | + | chr3_3:85862790-85862809 | Msa0480520:intron | 30.0% | |
| TAAGGAAAAAATCGTTGTTC+GGG | + | chr3_3:85862791-85862810 | Msa0480520:intron | 30.0% | |
| ! | AATAGTCTTTTTCCACTAGA+AGG | + | chr3_3:85863045-85863064 | Msa0480520:intron | 30.0% |
| AGATTATATATAGTTTGGCC+TGG | - | chr3_3:85863191-85863210 | None:intergenic | 30.0% | |
| AACCTAATATATGACCATAC+AGG | + | chr3_3:85863332-85863351 | Msa0480520:intron | 30.0% | |
| TTCCTGTATGGTCATATATT+AGG | - | chr3_3:85863337-85863356 | None:intergenic | 30.0% | |
| ATATTTGATTGTTCAAGCCA+AGG | - | chr3_3:85863425-85863444 | None:intergenic | 30.0% | |
| AAAACTAGTGTTGTCAATTG+TGG | - | chr3_3:85863457-85863476 | None:intergenic | 30.0% | |
| CTATCTATAGATATACATCC+AGG | - | chr3_3:85863520-85863539 | None:intergenic | 30.0% | |
| ! | TGTAAGAAAAGTATAAGGCA+GGG | + | chr3_3:85863579-85863598 | Msa0480520:intron | 30.0% |
| AAAAGCTGCTAAGAAAATCA+AGG | + | chr3_3:85863724-85863743 | Msa0480520:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | + | chr3_3:85863823-85863842 | Msa0480520:CDS | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | + | chr3_3:85863940-85863959 | Msa0480520:CDS | 30.0% | |
| GACTGCAAAATTACAAGCAT+TGG | - | chr3_3:85861209-85861228 | None:intergenic | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | + | chr3_3:85861377-85861396 | Msa0480520:CDS | 35.0% | |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | - | chr3_3:85861487-85861506 | None:intergenic | 35.0% |
| !! | TCTTTTGAAAAGCACATTGC+TGG | + | chr3_3:85861491-85861510 | Msa0480520:CDS | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr3_3:85861696-85861715 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr3_3:85861710-85861729 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr3_3:85861710-85861729 | None:intergenic | 35.0% |
| ACTGACACAAGTAATATCCA+AGG | + | chr3_3:85861935-85861954 | Msa0480520:CDS | 35.0% | |
| GACAAATTAACACTTGTCCT+TGG | - | chr3_3:85862051-85862070 | None:intergenic | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr3_3:85861696-85861715 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr3_3:85861710-85861729 | None:intergenic | 35.0% |
| ATCCAAGGACAAGCATTAAT+TGG | + | chr3_3:85862142-85862161 | Msa0480520:CDS | 35.0% | |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr3_3:85861710-85861729 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | + | chr3_3:85861712-85861731 | Msa0480520:CDS | 35.0% |
| ATAACAGCGTTGCATACAAA+TGG | - | chr3_3:85862313-85862332 | None:intergenic | 35.0% | |
| TACGGTGTAGAATGAGAAAA+CGG | - | chr3_3:85862344-85862363 | None:intergenic | 35.0% | |
| !! | GTTTAGCTAATTAGCTCTGT+AGG | + | chr3_3:85862544-85862563 | Msa0480520:intron | 35.0% |
| AGTGCTTTGCAAAATCATAG+TGG | + | chr3_3:85862673-85862692 | Msa0480520:intron | 35.0% | |
| GGAAAAAGTAACTGGAAGTA+AGG | + | chr3_3:85862773-85862792 | Msa0480520:intron | 35.0% | |
| !!! | AAAAGTGGGAAGGTTTTTTG+AGG | + | chr3_3:85862831-85862850 | Msa0480520:intron | 35.0% |
| GCTAGGTTCTACTGAAATTA+GGG | - | chr3_3:85862952-85862971 | None:intergenic | 35.0% | |
| AGCTAGGTTCTACTGAAATT+AGG | - | chr3_3:85862953-85862972 | None:intergenic | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | - | chr3_3:85863016-85863035 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | - | chr3_3:85863349-85863368 | None:intergenic | 35.0% | |
| !! | TTGTTTGCTATCAGTTATCC+TGG | + | chr3_3:85863499-85863518 | Msa0480520:intron | 35.0% |
| ! | CTGTAAGAAAAGTATAAGGC+AGG | + | chr3_3:85863578-85863597 | Msa0480520:intron | 35.0% |
| AACCTATGAGTCACAAAAAG+TGG | - | chr3_3:85863633-85863652 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | - | chr3_3:85863657-85863676 | None:intergenic | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | + | chr3_3:85863656-85863675 | Msa0480520:CDS | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | - | chr3_3:85863822-85863841 | None:intergenic | 35.0% | |
| AAACTGTCAGATCCAAAAGT+CGG | + | chr3_3:85863848-85863867 | Msa0480520:CDS | 35.0% | |
| ! | GTTTTCGGTTTATCTGAATC+TGG | - | chr3_3:85863938-85863957 | None:intergenic | 35.0% |
| AGATAAACCGAAAACAAAGG+AGG | + | chr3_3:85863943-85863962 | Msa0480520:CDS | 35.0% | |
| !!! | TCTGATACCTCCTTTGTTTT+CGG | - | chr3_3:85863953-85863972 | None:intergenic | 35.0% |
| AAACGTAAAGCTATGGAAAG+AGG | + | chr3_3:85863992-85864011 | Msa0480520:CDS | 35.0% | |
| AATGTGCACTTTATGCAATG+TGG | + | chr3_3:85864036-85864055 | Msa0480520:CDS | 35.0% | |
| GGTGAGTATTTAAATTTGCC+TGG | - | chr3_3:85864072-85864091 | None:intergenic | 35.0% | |
| CTTCTAATATTGCAGGCTGT+CGG | + | chr3_3:85861125-85861144 | Msa0480520:CDS | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | + | chr3_3:85861179-85861198 | Msa0480520:CDS | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | - | chr3_3:85861188-85861207 | None:intergenic | 40.0% | |
| ! | CTTGTAATTTTGCAGTCTGC+TGG | + | chr3_3:85861212-85861231 | Msa0480520:CDS | 40.0% |
| GCCAATGCTTCTAATATTGC+CGG | + | chr3_3:85861292-85861311 | Msa0480520:CDS | 40.0% | |
| ! | GCCATAAATTTGAAGTTGCC+AGG | - | chr3_3:85861381-85861400 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | - | chr3_3:85861425-85861444 | None:intergenic | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | - | chr3_3:85861430-85861449 | None:intergenic | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | - | chr3_3:85861435-85861454 | None:intergenic | 40.0% |
| ACTGACACAAGTAGTATCCA+CGG | + | chr3_3:85861581-85861600 | Msa0480520:CDS | 40.0% | |
| !! | ATACAAGGACAAGCGTTGAT+TGG | + | chr3_3:85861662-85861681 | Msa0480520:CDS | 40.0% |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr3_3:85861697-85861716 | Msa0480520:CDS | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr3_3:85861581-85861600 | Msa0480520:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr3_3:85861758-85861777 | Msa0480520:CDS | 40.0% | |
| ACAAAATCAACCTGTTTCGC+AGG | - | chr3_3:85861806-85861825 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr3_3:85861581-85861600 | Msa0480520:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr3_3:85861758-85861777 | Msa0480520:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr3_3:85861697-85861716 | Msa0480520:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr3_3:85861758-85861777 | Msa0480520:CDS | 40.0% | |
| ! | TTTCGTAGGCTCTGATTGTT+CGG | - | chr3_3:85861984-85862003 | None:intergenic | 40.0% |
| ACAGAATCAACCTGTTTCGT+AGG | - | chr3_3:85861998-85862017 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr3_3:85861581-85861600 | Msa0480520:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr3_3:85861697-85861716 | Msa0480520:CDS | 40.0% | |
| GACCAATTAATGCTTGTCCT+TGG | - | chr3_3:85862147-85862166 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr3_3:85861697-85861716 | Msa0480520:CDS | 40.0% | |
| TTGGACACACAAGACAAGAT+AGG | + | chr3_3:85862511-85862530 | Msa0480520:intron | 40.0% | |
| AAGACAAGATAGGATCACTG+TGG | + | chr3_3:85862521-85862540 | Msa0480520:intron | 40.0% | |
| AGACAAGATAGGATCACTGT+GGG | + | chr3_3:85862522-85862541 | Msa0480520:intron | 40.0% | |
| GTCTACTGGGAAAAAGTAAC+TGG | + | chr3_3:85862765-85862784 | Msa0480520:intron | 40.0% | |
| ATGTAGACAGCAGCAAAAAG+TGG | + | chr3_3:85862816-85862835 | Msa0480520:intron | 40.0% | |
| TGTAGACAGCAGCAAAAAGT+GGG | + | chr3_3:85862817-85862836 | Msa0480520:intron | 40.0% | |
| TCGTTTCATGGTCAAATTGC+AGG | - | chr3_3:85862897-85862916 | None:intergenic | 40.0% | |
| ACGTCATCAAATCCTTCTAG+TGG | - | chr3_3:85863060-85863079 | None:intergenic | 40.0% | |
| ! | CTCGTTAATTTTGTAGTGCC+AGG | + | chr3_3:85863170-85863189 | Msa0480520:intron | 40.0% |
| !!! | GACCACTTTTTGTGACTCAT+AGG | + | chr3_3:85863628-85863647 | Msa0480520:intron | 40.0% |
| GTTGCCTTGAAGTCTAATGA+TGG | + | chr3_3:85863650-85863669 | Msa0480520:CDS | 40.0% | |
| TCAAGGTTGCTGAATCTGTA+TGG | + | chr3_3:85863741-85863760 | Msa0480520:CDS | 40.0% | |
| !!! | TCTGAATCTGGTTTTTCCTG+TGG | - | chr3_3:85863926-85863945 | None:intergenic | 40.0% |
| GACAGAGAAACGTAAAGCTA+TGG | + | chr3_3:85863985-85864004 | Msa0480520:CDS | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | - | chr3_3:85864093-85864112 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | + | chr3_3:85864096-85864115 | Msa0480520:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | - | chr3_3:85864102-85864121 | None:intergenic | 40.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | - | chr3_3:85861176-85861195 | None:intergenic | 45.0% | |
| ! | GCCGGCAATATTAGAAGCAT+TGG | - | chr3_3:85861296-85861315 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | + | chr3_3:85861299-85861318 | Msa0480520:CDS | 45.0% |
| ATCCACGGTCAAGCGTTAAT+TGG | + | chr3_3:85861596-85861615 | Msa0480520:CDS | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | + | chr3_3:85861631-85861650 | Msa0480520:CDS | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | - | chr3_3:85861763-85861782 | None:intergenic | 45.0% | |
| ! | TTTCGCAGGCTCTGATTGTT+CGG | - | chr3_3:85861792-85861811 | None:intergenic | 45.0% |
| GACCAATTAACGCTTGTCCT+TGG | - | chr3_3:85861763-85861782 | None:intergenic | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | - | chr3_3:85861763-85861782 | None:intergenic | 45.0% | |
| ACAATCAGAGCCTACGAAAC+AGG | + | chr3_3:85861985-85862004 | Msa0480520:CDS | 45.0% | |
| ACTGACGCAAGTAAGATCCA+AGG | + | chr3_3:85862127-85862146 | Msa0480520:CDS | 45.0% | |
| ACGTGCAATGTTGTATGCGT+TGG | + | chr3_3:85862223-85862242 | Msa0480520:CDS | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | - | chr3_3:85862392-85862411 | None:intergenic | 45.0% | |
| CCACACATAATGCACACTAG+TGG | + | chr3_3:85862389-85862408 | Msa0480520:intron | 45.0% | |
| ! | TAGTTGGCTTACTCGTCTAC+TGG | + | chr3_3:85862751-85862770 | Msa0480520:intron | 45.0% |
| ! | AGTTGGCTTACTCGTCTACT+GGG | + | chr3_3:85862752-85862771 | Msa0480520:intron | 45.0% |
| TCAGCGTTACAGTCGTTTCA+TGG | - | chr3_3:85862909-85862928 | None:intergenic | 45.0% | |
| AATACTGTGCCATGACGTAG+CGG | - | chr3_3:85862977-85862996 | None:intergenic | 45.0% | |
| GTAGTTAACAGAGGCTGTTG+CGG | - | chr3_3:85863007-85863026 | None:intergenic | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | + | chr3_3:85863009-85863028 | Msa0480520:intron | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | - | chr3_3:85863693-85863712 | None:intergenic | 45.0% | |
| TCAGATCCAAAAGTCGGTGT+TGG | + | chr3_3:85863854-85863873 | Msa0480520:CDS | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+TGG | - | chr3_3:85863900-85863919 | None:intergenic | 45.0% |
| ACCGCAATAGGCACTTCAAT+TGG | + | chr3_3:85863899-85863918 | Msa0480520:CDS | 45.0% | |
| ! | CCCAATTGAAGTGCCTATTG+CGG | - | chr3_3:85863903-85863922 | None:intergenic | 45.0% |
| CCGCAATAGGCACTTCAATT+GGG | + | chr3_3:85863900-85863919 | Msa0480520:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | + | chr3_3:85864051-85864070 | Msa0480520:CDS | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | + | chr3_3:85864105-85864124 | Msa0480520:CDS | 45.0% | |
| AAGAAGGCAGGGTTAATCAC+TGG | + | chr3_3:85864121-85864140 | Msa0480520:CDS | 45.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | + | chr3_3:85861266-85861285 | Msa0480520:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCGTAA+TGG | + | chr3_3:85861353-85861372 | Msa0480520:CDS | 50.0% | |
| ACAATCAGAGCCTGCGAAAC+AGG | + | chr3_3:85861793-85861812 | Msa0480520:CDS | 50.0% | |
| ! | GGCTCTGATTGTTCAGCTAC+AGG | - | chr3_3:85861881-85861900 | None:intergenic | 50.0% |
| ! | GGCTCTGATTGTTCTGCTAC+AGG | - | chr3_3:85862169-85862188 | None:intergenic | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | + | chr3_3:85862273-85862292 | Msa0480520:CDS | 50.0% |
| GACAGCAGCAAAAAGTGGGA+AGG | + | chr3_3:85862821-85862840 | Msa0480520:intron | 50.0% | |
| GTTGCCGAACTCAAGCGTAA+CGG | + | chr3_3:85863686-85863705 | Msa0480520:CDS | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | + | chr3_3:85863800-85863819 | Msa0480520:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | + | chr3_3:85864110-85864129 | Msa0480520:CDS | 50.0% | |
| TGCGCAGAAGGCAAACTTGC+AGG | - | chr3_3:85861263-85861282 | None:intergenic | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | - | chr3_3:85861275-85861294 | None:intergenic | 55.0% | |
| TGGTGTGACGAACCAACAGC+CGG | - | chr3_3:85861314-85861333 | None:intergenic | 55.0% | |
| CAGGAACCATTACGCGCAGA+AGG | - | chr3_3:85861362-85861381 | None:intergenic | 55.0% | |
| CTTCTGCGCGTAATGGTTCC+TGG | + | chr3_3:85861360-85861379 | Msa0480520:CDS | 55.0% | |
| GGCCAATTAACGCTTGACCG+TGG | - | chr3_3:85861601-85861620 | None:intergenic | 55.0% | |
| GCTCTGATTGCTCGCGTACA+GGG | - | chr3_3:85861622-85861641 | None:intergenic | 55.0% | |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr3_3:85861689-85861708 | None:intergenic | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr3_3:85861689-85861708 | None:intergenic | 55.0% |
| ! | GACTGTAACGCTGACTGCCA+CGG | + | chr3_3:85862915-85862934 | Msa0480520:intron | 55.0% |
| ! | ACTGTAACGCTGACTGCCAC+GGG | + | chr3_3:85862916-85862935 | Msa0480520:intron | 55.0% |
| ACCTAGCTACCGCTACGTCA+TGG | + | chr3_3:85862965-85862984 | Msa0480520:intron | 55.0% | |
| CGCTTGAGTTCGGCAACAGA+TGG | - | chr3_3:85863683-85863702 | None:intergenic | 55.0% | |
| !! | CCAAAAGTCGGTGTTGGCAG+CGG | + | chr3_3:85863860-85863879 | Msa0480520:CDS | 55.0% |
| !! | TATTGCGGTGGTGGTGGTAG+TGG | - | chr3_3:85863888-85863907 | None:intergenic | 55.0% |
| ACTACCACCACCACCGCAAT+AGG | + | chr3_3:85863887-85863906 | Msa0480520:CDS | 55.0% | |
| ! | TGAAGTGCCTATTGCGGTGG+TGG | - | chr3_3:85863897-85863916 | None:intergenic | 55.0% |
| AGGCACTTCAATTGGGCCAC+AGG | + | chr3_3:85863907-85863926 | Msa0480520:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr3_3:85864109-85864128 | Msa0480520:CDS | 55.0% | |
| ! | TTGCAGGCGCTGCTGAAGTG+TGG | - | chr3_3:85861334-85861353 | None:intergenic | 60.0% |
| CGCGCAGAAGGCAAACTTGC+AGG | - | chr3_3:85861350-85861369 | None:intergenic | 60.0% | |
| ! | GGCTCTGATTGCTCGCGTAC+AGG | - | chr3_3:85861623-85861642 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCGAC+AGG | - | chr3_3:85861785-85861804 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCTGC+AGG | - | chr3_3:85862073-85862092 | None:intergenic | 60.0% |
| GCCATGACGTAGCGGTAGCT+AGG | - | chr3_3:85862969-85862988 | None:intergenic | 60.0% | |
| !!! | CCGCTGCCAACACCGACTTT+TGG | - | chr3_3:85863863-85863882 | None:intergenic | 60.0% |
| ! | AGTGCCTATTGCGGTGGTGG+TGG | - | chr3_3:85863894-85863913 | None:intergenic | 60.0% |
| TTAGGGCAGCGTAGCGCCCG+TGG | - | chr3_3:85862935-85862954 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85861122 | 85864147 | 85861122 | ID=Msa0480520;Name=Msa0480520 |
| chr3_3 | mRNA | 85861122 | 85864147 | 85861122 | ID=Msa0480520-mRNA-1;Parent=Msa0480520;Name=Msa0480520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|556 |
| chr3_3 | exon | 85861122 | 85862294 | 85861122 | ID=Msa0480520-mRNA-1:exon:24745;Parent=Msa0480520-mRNA-1 |
| chr3_3 | exon | 85863650 | 85864147 | 85863650 | ID=Msa0480520-mRNA-1:exon:24746;Parent=Msa0480520-mRNA-1 |
| chr3_3 | CDS | 85861122 | 85862294 | 85861122 | ID=Msa0480520-mRNA-1:cds;Parent=Msa0480520-mRNA-1 |
| chr3_3 | CDS | 85863650 | 85864147 | 85863650 | ID=Msa0480520-mRNA-1:cds;Parent=Msa0480520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
