AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0483380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483380 MtrunA17_Chr2g0330621 77.841 176 26 2 1 163 28 203 1.27e-92 271
Msa0483380 MtrunA17_Chr2g0330591 73.034 178 34 3 1 165 261 437 5.43e-80 257
Msa0483380 MtrunA17_Chr2g0330591 71.963 107 29 1 140 246 541 646 3.07e-43 155
Msa0483380 MtrunA17_Chr2g0330631 89.655 87 9 0 160 246 73 159 4.95e-50 164
Msa0483380 MtrunA17_Chr8g0340871 41.436 181 89 5 1 165 265 444 7.29e-31 120
Msa0483380 MtrunA17_Chr8g0340871 48.810 84 43 0 163 246 565 648 3.22e-20 89.4
Msa0483380 MtrunA17_Chr8g0341151 40.217 184 87 5 1 165 255 434 9.82e-30 117
Msa0483380 MtrunA17_Chr8g0341151 51.724 87 42 0 160 246 546 632 1.52e-22 96.3
Msa0483380 MtrunA17_Chr8g0340931 40.659 182 90 5 1 165 259 439 1.21e-28 114
Msa0483380 MtrunA17_Chr8g0340931 52.874 87 41 0 160 246 553 639 2.41e-22 95.5
Msa0483380 MtrunA17_Chr8g0341011 40.110 182 91 5 1 165 260 440 3.46e-28 112
Msa0483380 MtrunA17_Chr8g0341011 52.874 87 41 0 160 246 556 642 3.33e-23 98.2
Msa0483380 MtrunA17_Chr8g0341231 40.828 169 77 6 18 165 298 464 3.29e-27 109
Msa0483380 MtrunA17_Chr8g0347661 38.122 181 95 5 1 165 267 446 5.28e-27 109
Msa0483380 MtrunA17_Chr8g0347661 50.602 83 41 0 164 246 562 644 4.91e-21 92.0
Msa0483380 MtrunA17_Chr8g0340941 36.957 184 89 4 1 165 259 434 1.78e-26 107
Msa0483380 MtrunA17_Chr8g0340891 37.222 180 86 4 5 165 267 438 3.14e-26 107
Msa0483380 MtrunA17_Chr8g0340891 52.874 87 41 0 160 246 551 637 1.18e-23 99.4
Msa0483380 MtrunA17_Chr8g0341361 59.770 87 34 1 160 246 175 260 4.83e-26 105
Msa0483380 MtrunA17_Chr8g0340911 38.286 175 94 3 5 165 265 439 8.18e-26 105
Msa0483380 MtrunA17_Chr8g0340911 50.575 87 43 0 160 246 553 639 1.35e-21 93.6
Msa0483380 MtrunA17_Chr8g0340881 38.919 185 89 5 1 165 263 443 9.01e-26 105
Msa0483380 MtrunA17_Chr8g0340881 51.724 87 42 0 160 246 557 643 1.01e-21 94.0
Msa0483380 MtrunA17_Chr8g0341131 53.012 83 39 0 164 246 8 90 1.17e-23 93.6
Msa0483380 MtrunA17_Chr6g0487571 51.546 97 42 1 150 246 552 643 1.42e-23 99.4
Msa0483380 MtrunA17_Chr6g0487571 33.523 176 99 5 4 163 267 440 1.99e-20 90.1
Msa0483380 MtrunA17_Chr8g0341101 55.422 83 37 0 164 246 607 689 3.81e-23 98.2
Msa0483380 MtrunA17_Chr8g0341101 36.047 172 92 7 16 175 332 497 2.78e-16 77.8
Msa0483380 MtrunA17_Chr8g0341061 51.724 87 42 0 160 246 600 686 1.08e-22 96.7
Msa0483380 MtrunA17_Chr8g0341061 36.145 166 89 6 6 159 318 478 1.50e-17 81.6
Msa0483380 MtrunA17_Chr8g0341221 49.474 95 48 0 152 246 16 110 1.51e-22 91.7
Msa0483380 MtrunA17_Chr8g0341111 53.012 83 39 0 164 246 470 552 2.62e-22 95.5
Msa0483380 MtrunA17_Chr8g0341081 51.807 83 40 0 164 246 38 120 3.60e-22 93.2
Msa0483380 MtrunA17_Chr8g0358831 38.411 151 79 4 27 163 254 404 6.18e-22 94.4
Msa0483380 MtrunA17_Chr8g0358831 51.111 90 37 1 164 246 518 607 9.10e-21 90.9
Msa0483380 MtrunA17_Chr8g0340951 49.425 87 44 0 160 246 29 115 7.02e-22 90.1
Msa0483380 MtrunA17_Chr8g0341251 50.575 87 43 0 160 246 35 121 7.62e-22 92.4
Msa0483380 MtrunA17_Chr8g0340971 49.425 87 44 0 160 246 76 162 1.09e-21 90.9
Msa0483380 MtrunA17_Chr2g0330691 86.364 44 6 0 203 246 1 44 4.54e-19 82.8
Msa0483380 MtrunA17_Chr8g0341141 31.343 201 114 7 1 183 261 455 2.51e-18 83.6
Msa0483380 MtrunA17_Chr8g0341091 32.787 183 105 6 5 175 315 491 7.32e-16 76.6
Msa0483380 MtrunA17_Chr5g0423891 41.573 89 52 0 158 246 147 235 6.16e-15 73.6
Msa0483380 MtrunA17_Chr8g0365691 42.308 78 43 1 162 237 297 374 1.29e-13 69.7
Msa0483380 MtrunA17_Chr8g0373501 36.792 106 62 3 146 246 304 409 1.33e-13 70.1
Msa0483380 MtrunA17_Chr6g0455651 39.362 94 52 1 153 246 100 188 2.14e-13 68.9
Msa0483380 MtrunA17_Chr8g0376131 43.529 85 46 1 164 246 40 124 4.45e-13 68.2
Msa0483380 MtrunA17_Chr7g0237401 38.043 92 54 2 158 246 75 166 8.01e-13 67.4
Msa0483380 MtrunA17_Chr2g0318301 36.000 100 61 2 150 246 475 574 1.13e-12 67.4
Msa0483380 MtrunA17_Chr7g0263591 40.506 79 47 0 168 246 598 676 1.42e-12 67.0
Msa0483380 MtrunA17_Chr2g0319101 33.071 127 73 2 120 246 70 184 1.60e-12 66.6
Msa0483380 MtrunA17_Chr6g0485761 38.824 85 50 1 164 246 283 367 2.52e-12 66.2
Msa0483380 MtrunA17_Chr1g0181731 39.759 83 50 0 164 246 588 670 3.02e-12 65.9
Msa0483380 MtrunA17_Chr1g0160581 42.045 88 50 1 159 246 290 376 4.41e-12 65.5
Msa0483380 MtrunA17_Chr7g0219671 38.614 101 57 3 151 246 505 605 4.91e-12 65.5
Msa0483380 MtrunA17_Chr5g0403891 37.778 90 54 1 159 246 239 328 5.46e-12 65.1
Msa0483380 MtrunA17_Chr8g0352381 35.294 85 53 1 164 246 519 603 8.11e-12 64.7
Msa0483380 MtrunA17_Chr6g0485721 38.095 84 50 1 164 245 86 169 8.43e-12 64.3
Msa0483380 MtrunA17_Chr8g0341171 36.782 87 37 1 160 246 72 140 9.40e-12 61.2
Msa0483380 MtrunA17_Chr7g0219781 34.343 99 63 1 150 246 510 608 1.10e-11 64.3
Msa0483380 MtrunA17_Chr7g0219691 39.604 101 56 3 151 246 505 605 1.39e-11 63.9
Msa0483380 MtrunA17_Chr7g0219721 39.604 101 56 3 151 246 505 605 1.41e-11 63.9
Msa0483380 MtrunA17_Chr1g0160771 42.045 88 50 1 159 246 286 372 1.49e-11 63.9
Msa0483380 MtrunA17_Chr3g0123141 41.791 67 39 0 173 239 607 673 1.52e-11 63.9
Msa0483380 MtrunA17_Chr6g0487561 35.780 109 65 3 2 107 274 380 1.64e-11 63.5
Msa0483380 MtrunA17_Chr7g0219601 40.741 81 46 1 168 246 511 591 1.72e-11 63.9
Msa0483380 MtrunA17_Chr7g0219571 39.506 81 47 1 168 246 527 607 1.95e-11 63.5
Msa0483380 MtrunA17_Chr1g0160731 40.909 88 51 1 159 246 282 368 2.04e-11 63.5
Msa0483380 MtrunA17_Chr7g0219631 39.024 82 47 2 163 241 48 129 2.26e-11 59.7
Msa0483380 MtrunA17_Chr1g0190581 36.585 82 50 1 167 246 513 594 2.36e-11 63.5
Msa0483380 MtrunA17_Chr8g0341181 50.000 58 24 1 118 175 21 73 2.46e-11 59.7
Msa0483380 MtrunA17_Chr4g0061081 36.471 85 52 1 164 246 515 599 2.52e-11 63.2
Msa0483380 MtrunA17_Chr3g0143961 31.633 98 65 1 151 246 43 140 2.53e-11 62.8
Msa0483380 MtrunA17_Chr7g0219651 39.506 81 47 1 168 246 1512 1592 2.61e-11 63.5
Msa0483380 MtrunA17_Chr1g0203631 38.272 81 48 1 168 246 985 1065 2.90e-11 63.2
Msa0483380 MtrunA17_Chr7g0219611 40.741 81 46 1 168 246 507 587 2.91e-11 63.2
Msa0483380 MtrunA17_Chr1g0158181 33.333 87 57 1 160 246 312 397 3.48e-11 62.8
Msa0483380 MtrunA17_Chr1g0158771 37.500 88 54 1 159 246 274 360 3.60e-11 62.8
Msa0483380 MtrunA17_Chr2g0291501 40.230 87 49 2 154 237 616 702 4.61e-11 62.4
Msa0483380 MtrunA17_Chr3g0108351 35.294 85 53 1 164 246 608 692 4.72e-11 62.4
Msa0483380 MtrunA17_Chr1g0160921 37.255 102 59 2 150 246 23 124 5.09e-11 62.0
Msa0483380 MtrunA17_Chr1g0158341 35.556 90 57 1 157 246 12 100 5.29e-11 61.6
Msa0483380 MtrunA17_Chr5g0441021 36.000 100 51 3 160 246 53 152 5.37e-11 62.0
Msa0483380 MtrunA17_Chr1g0206211 32.990 97 63 1 152 246 4 100 5.63e-11 60.1
Msa0483380 MtrunA17_Chr3g0144481 40.789 76 43 1 164 237 77 152 5.72e-11 62.0
Msa0483380 MtrunA17_Chr4g0053591 39.474 76 44 1 173 246 145 220 6.18e-11 62.0
Msa0483380 MtrunA17_Chr3g0106121 35.000 100 59 2 147 246 493 586 6.43e-11 62.0
Msa0483380 MtrunA17_Chr4g0053561 39.474 76 44 1 173 246 438 513 6.59e-11 62.0
Msa0483380 MtrunA17_Chr5g0411631 38.356 73 45 0 167 239 589 661 7.50e-11 62.0
Msa0483380 MtrunA17_Chr8g0341351 40.625 96 53 3 18 110 291 385 7.93e-11 61.2
Msa0483380 MtrunA17_Chr8g0341271 35.135 111 67 2 1 110 191 297 8.26e-11 60.8
Msa0483380 MtrunA17_Chr3g0108361 38.824 85 50 1 164 246 610 694 9.08e-11 61.6
Msa0483380 MtrunA17_Chr2g0311511 33.613 119 63 2 143 246 402 519 9.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483380 AT2G19210.1 43.353 173 83 3 2 159 264 436 8.70e-36 135
Msa0483380 AT2G19210.1 50.000 100 49 1 147 246 549 647 3.99e-23 98.2
Msa0483380 AT1G05700.1 41.358 162 78 5 18 163 276 436 9.07e-29 114
Msa0483380 AT1G05700.1 45.783 83 44 1 164 246 560 641 1.25e-16 79.3
Msa0483380 AT1G51890.5 60.920 87 33 1 160 246 284 369 9.57e-29 114
Msa0483380 AT1G51890.5 38.217 157 78 4 22 159 1 157 4.12e-20 89.4
Msa0483380 AT1G05700.2 41.358 162 78 5 18 163 276 436 1.13e-28 114
Msa0483380 AT1G05700.2 45.783 83 44 1 164 246 591 672 1.21e-16 79.3
Msa0483380 AT1G51890.4 60.920 87 33 1 160 246 492 577 1.20e-28 114
Msa0483380 AT1G51890.4 38.650 163 81 4 16 159 203 365 4.10e-22 95.5
Msa0483380 AT1G51890.3 60.920 87 33 1 160 246 556 641 1.28e-28 114
Msa0483380 AT1G51890.3 37.725 167 85 4 16 163 267 433 3.84e-22 95.5
Msa0483380 AT1G51890.1 60.920 87 33 1 160 246 556 641 1.39e-28 114
Msa0483380 AT1G51890.1 37.725 167 85 4 16 163 267 433 4.26e-22 95.5
Msa0483380 AT1G51890.2 60.920 87 33 1 160 246 556 641 1.41e-28 114
Msa0483380 AT1G51890.2 38.650 163 81 4 16 159 267 429 4.28e-22 95.5
Msa0483380 AT5G59680.1 39.881 168 75 6 18 163 274 437 7.11e-27 109
Msa0483380 AT5G59680.1 48.864 88 45 0 159 246 565 652 5.98e-17 80.5
Msa0483380 AT3G46400.1 40.659 182 88 7 1 163 258 438 9.92e-27 108
Msa0483380 AT3G46400.1 44.792 96 53 0 151 246 553 648 9.92e-21 91.3
Msa0483380 AT2G19230.1 38.411 151 77 4 18 152 280 430 1.30e-26 108
Msa0483380 AT2G19230.1 53.012 83 38 1 164 246 560 641 1.85e-20 90.5
Msa0483380 AT1G51880.3 57.732 97 38 2 150 246 570 663 1.38e-26 108
Msa0483380 AT1G51880.3 40.541 185 83 5 1 162 274 454 2.42e-26 107
Msa0483380 AT1G51880.2 57.732 97 38 2 150 246 562 655 1.43e-26 108
Msa0483380 AT1G51880.2 40.541 185 83 5 1 162 274 454 2.22e-26 107
Msa0483380 AT2G19230.2 38.411 151 77 4 18 152 280 430 1.49e-26 108
Msa0483380 AT2G19230.2 53.012 83 38 1 164 246 559 640 1.49e-20 90.9
Msa0483380 AT1G51880.1 57.732 97 38 2 150 246 544 637 1.67e-26 108
Msa0483380 AT1G51880.1 40.541 185 83 5 1 162 256 436 2.57e-26 107
Msa0483380 AT1G51860.2 62.963 81 29 1 166 246 432 511 2.09e-26 107
Msa0483380 AT1G51860.2 39.394 165 81 4 14 159 126 290 4.29e-24 101
Msa0483380 AT1G51860.1 62.963 81 29 1 166 246 576 655 2.46e-26 107
Msa0483380 AT1G51860.1 39.394 165 81 4 14 159 270 434 4.30e-24 101
Msa0483380 AT3G21340.2 55.172 87 39 0 160 246 578 664 6.48e-26 106
Msa0483380 AT3G21340.2 35.795 176 93 6 7 163 267 441 8.63e-23 97.4
Msa0483380 AT3G21340.1 55.172 87 39 0 160 246 578 664 7.33e-26 106
Msa0483380 AT3G21340.1 35.795 176 93 6 7 163 267 441 6.57e-23 97.8
Msa0483380 AT1G51870.2 57.471 87 36 1 160 246 569 654 8.68e-26 105
Msa0483380 AT1G51870.2 40.491 163 78 3 19 162 275 437 3.02e-24 101
Msa0483380 AT1G51805.2 39.766 171 69 6 19 163 244 406 1.02e-25 105
Msa0483380 AT1G51805.2 52.874 87 41 0 160 246 539 625 1.97e-24 102
Msa0483380 AT1G51870.1 57.471 87 36 1 160 246 517 602 1.03e-25 105
Msa0483380 AT1G51870.1 37.705 183 95 3 19 182 275 457 6.53e-25 103
Msa0483380 AT1G51805.1 39.766 171 69 6 19 163 268 430 1.08e-25 105
Msa0483380 AT1G51805.1 52.874 87 41 0 160 246 563 649 2.18e-24 102
Msa0483380 AT4G29990.1 35.593 177 97 5 2 162 260 435 1.42e-25 105
Msa0483380 AT4G29990.1 56.627 83 35 1 164 246 564 645 3.76e-23 98.6
Msa0483380 AT4G29990.2 35.593 177 97 5 2 162 260 435 1.68e-25 105
Msa0483380 AT4G29990.2 56.627 83 35 1 164 246 564 645 3.16e-23 98.6
Msa0483380 AT2G04300.2 54.023 87 40 0 160 246 568 654 2.51e-25 104
Msa0483380 AT2G04300.2 36.111 180 91 9 4 163 267 442 1.16e-22 97.1
Msa0483380 AT2G04300.1 54.023 87 40 0 160 246 527 613 2.57e-25 104
Msa0483380 AT2G04300.1 30.682 176 65 7 4 163 267 401 2.52e-14 72.4
Msa0483380 AT1G51830.2 52.874 87 41 0 160 246 379 465 4.50e-25 103
Msa0483380 AT1G51830.2 34.184 196 109 6 1 178 69 262 2.36e-20 90.1
Msa0483380 AT1G51830.1 52.874 87 41 0 160 246 372 458 4.93e-25 103
Msa0483380 AT1G51830.1 34.184 196 109 6 1 178 62 255 2.35e-20 90.1
Msa0483380 AT3G46370.2 39.227 181 84 8 2 163 176 349 5.37e-25 103
Msa0483380 AT3G46370.2 43.137 102 54 1 149 246 458 559 1.02e-19 88.6
Msa0483380 AT3G46370.1 39.227 181 84 8 2 163 176 349 5.37e-25 103
Msa0483380 AT3G46370.1 43.137 102 54 1 149 246 458 559 1.02e-19 88.6
Msa0483380 AT1G51800.1 37.222 180 82 5 18 175 272 442 6.39e-25 103
Msa0483380 AT1G51800.1 48.276 87 44 1 160 246 572 657 5.55e-19 86.3
Msa0483380 AT1G51820.2 51.724 87 42 0 160 246 302 388 2.10e-24 102
Msa0483380 AT1G51820.2 34.591 159 84 5 26 165 12 169 1.19e-17 82.4
Msa0483380 AT1G51820.1 51.724 87 42 0 160 246 564 650 2.67e-24 101
Msa0483380 AT1G51820.1 34.615 182 99 5 1 163 249 429 1.06e-22 97.1
Msa0483380 AT3G46420.1 38.824 170 84 6 13 163 269 437 2.76e-24 101
Msa0483380 AT3G46420.1 47.436 78 41 0 169 246 526 603 5.02e-19 86.3
Msa0483380 AT1G51850.2 51.724 87 42 0 160 246 564 650 5.45e-24 100
Msa0483380 AT1G51850.2 35.165 182 98 5 1 163 249 429 1.05e-21 94.4
Msa0483380 AT1G51850.1 51.724 87 42 0 160 246 544 630 5.63e-24 100
Msa0483380 AT1G51850.1 35.165 182 98 5 1 163 229 409 1.27e-21 94.0
Msa0483380 AT1G51810.1 35.714 182 97 5 1 163 124 304 8.05e-24 100
Msa0483380 AT1G51810.1 52.874 87 41 0 160 246 436 522 1.69e-23 99.4
Msa0483380 AT3G46340.1 36.757 185 93 7 1 163 258 440 8.06e-24 100
Msa0483380 AT3G46340.1 46.591 88 46 1 160 246 571 658 9.78e-19 85.5
Msa0483380 AT5G59616.1 39.726 146 61 5 18 143 12 150 1.37e-23 93.2
Msa0483380 AT1G51910.1 55.682 88 37 2 160 246 559 645 2.96e-23 98.6
Msa0483380 AT1G51910.1 41.718 163 70 4 19 159 275 434 1.88e-21 93.6
Msa0483380 AT1G49100.1 32.787 183 93 4 6 163 263 440 3.70e-23 98.6
Msa0483380 AT1G49100.1 45.977 87 47 0 160 246 567 653 1.50e-19 87.8
Msa0483380 AT2G28970.1 50.575 87 43 0 160 246 465 551 1.18e-22 97.1
Msa0483380 AT2G28970.1 35.165 182 98 5 1 163 155 335 1.82e-21 93.6
Msa0483380 AT2G28970.2 50.575 87 43 0 160 246 430 516 1.19e-22 97.1
Msa0483380 AT2G28970.2 35.165 182 98 5 1 163 120 300 1.83e-21 93.6
Msa0483380 AT3G46330.2 38.415 164 82 5 19 163 276 439 1.51e-22 96.7
Msa0483380 AT3G46330.2 43.678 87 49 0 160 246 528 614 2.99e-18 84.0
Msa0483380 AT3G46330.1 38.415 164 82 5 19 163 276 439 1.57e-22 96.7
Msa0483380 AT3G46330.1 43.678 87 49 0 160 246 552 638 3.04e-18 84.0
Msa0483380 AT5G59650.1 39.459 185 87 8 1 163 257 438 1.90e-22 96.3
Msa0483380 AT5G59650.1 48.276 87 45 0 160 246 565 651 4.89e-16 77.8
Msa0483380 AT2G19190.1 34.659 176 97 5 5 163 267 441 1.41e-21 94.0
Msa0483380 AT2G19190.1 48.485 99 48 2 150 246 548 645 5.04e-21 92.0
Msa0483380 AT2G28990.2 49.425 87 44 0 160 246 563 649 1.86e-21 93.6
Msa0483380 AT2G28990.2 35.928 167 81 7 19 163 270 432 1.44e-19 87.8
Msa0483380 AT2G28990.1 49.425 87 44 0 160 246 563 649 1.86e-21 93.6
Msa0483380 AT2G28990.1 35.928 167 81 7 19 163 270 432 1.44e-19 87.8
Msa0483380 AT5G59670.2 48.889 90 46 0 157 246 547 636 1.95e-21 93.6
Msa0483380 AT5G59670.2 36.747 166 85 6 18 163 272 437 5.66e-20 89.4
Msa0483380 AT5G59670.1 48.889 90 46 0 157 246 547 636 1.95e-21 93.6
Msa0483380 AT5G59670.1 36.747 166 85 6 18 163 272 437 5.66e-20 89.4
Msa0483380 AT4G20450.2 50.000 94 45 1 153 246 572 663 2.32e-21 93.2
Msa0483380 AT4G20450.2 35.152 165 87 5 19 163 293 457 1.93e-19 87.4
Msa0483380 AT4G20450.1 50.000 94 45 1 153 246 572 663 2.51e-21 93.2
Msa0483380 AT4G20450.1 35.152 165 87 5 19 163 293 457 2.46e-19 87.4
Msa0483380 AT1G07560.1 51.190 84 41 0 163 246 559 642 4.45e-21 92.4
Msa0483380 AT1G07560.1 35.366 164 86 5 19 163 277 439 2.18e-18 84.3
Msa0483380 AT2G14510.1 50.000 88 43 1 159 246 548 634 4.89e-21 92.4
Msa0483380 AT2G14510.1 31.285 179 100 7 1 159 259 434 2.13e-16 78.6
Msa0483380 AT2G14510.2 50.000 88 43 1 159 246 556 642 5.00e-21 92.4
Msa0483380 AT2G14510.2 31.285 179 100 7 1 159 267 442 1.92e-16 79.0
Msa0483380 AT2G28960.1 43.689 103 53 1 149 246 411 513 5.02e-21 92.0
Msa0483380 AT2G28960.1 37.423 163 82 7 20 163 142 303 1.72e-17 82.0
Msa0483380 AT2G28960.2 43.689 103 53 1 149 246 543 645 6.16e-21 92.0
Msa0483380 AT2G28960.2 37.423 163 82 7 20 163 274 435 2.00e-17 81.6
Msa0483380 AT5G16900.1 50.617 81 40 0 166 246 565 645 6.20e-21 92.0
Msa0483380 AT5G16900.1 30.636 173 92 6 19 163 269 441 2.19e-13 69.7
Msa0483380 AT5G16900.3 50.617 81 40 0 166 246 565 645 6.20e-21 92.0
Msa0483380 AT5G16900.3 30.636 173 92 6 19 163 269 441 2.19e-13 69.7
Msa0483380 AT5G16900.4 48.276 87 45 0 160 246 373 459 6.47e-21 91.7
Msa0483380 AT5G16900.4 30.636 173 92 6 19 163 83 255 1.37e-13 70.5
Msa0483380 AT2G14440.1 50.000 88 43 1 159 246 549 635 8.09e-21 91.7
Msa0483380 AT2G14440.1 31.492 181 97 6 1 159 260 435 6.00e-19 86.3
Msa0483380 AT1G51790.2 30.857 175 105 4 5 163 264 438 3.45e-20 89.7
Msa0483380 AT1G51790.2 42.857 84 47 1 163 246 618 700 5.20e-14 71.6
Msa0483380 AT1G51790.3 30.857 175 105 4 5 163 264 438 3.61e-20 89.7
Msa0483380 AT1G51790.3 42.857 84 47 1 163 246 566 648 5.86e-14 71.6
Msa0483380 AT1G51790.1 30.857 175 105 4 5 163 264 438 3.61e-20 89.7
Msa0483380 AT1G51790.1 42.857 84 47 1 163 246 566 648 5.86e-14 71.6
Msa0483380 AT1G07550.1 33.516 182 101 6 1 163 257 437 8.27e-20 88.6
Msa0483380 AT1G07550.1 45.238 84 45 1 163 246 549 631 4.19e-17 80.9
Msa0483380 AT2G29000.1 47.126 87 46 0 160 246 551 637 8.61e-20 88.6
Msa0483380 AT2G29000.1 37.576 165 81 6 19 163 271 433 1.71e-16 79.0
Msa0483380 AT5G59650.2 36.269 193 90 9 1 163 257 446 3.23e-18 84.0
Msa0483380 AT5G59650.2 48.276 87 45 0 160 246 573 659 4.72e-16 77.8
Msa0483380 AT5G59660.2 38.060 134 64 5 49 163 222 355 1.14e-16 79.3
Msa0483380 AT5G59660.2 48.611 72 37 0 151 222 465 536 5.88e-14 71.6
Msa0483380 AT5G59660.3 38.060 134 64 5 49 163 244 377 1.37e-16 79.3
Msa0483380 AT5G59660.3 48.611 72 37 0 151 222 490 561 6.33e-14 71.2
Msa0483380 AT5G59660.1 38.060 134 64 5 49 163 244 377 1.41e-16 79.3
Msa0483380 AT5G59660.1 48.611 72 37 0 151 222 487 558 6.44e-14 71.2
Msa0483380 AT4G29180.3 44.330 97 41 1 163 246 553 649 3.05e-16 78.2
Msa0483380 AT4G29180.3 31.206 141 86 3 5 135 268 407 1.65e-13 70.1
Msa0483380 AT4G29180.1 44.330 97 41 1 163 246 554 650 3.19e-16 78.2
Msa0483380 AT4G29180.2 44.330 97 41 1 163 246 556 652 3.32e-16 78.2
Msa0483380 AT4G29180.2 31.206 141 86 3 5 135 268 407 1.77e-13 70.1
Msa0483380 AT4G29450.1 43.750 96 42 2 163 246 555 650 7.37e-16 77.0
Msa0483380 AT4G29450.1 29.134 127 80 2 18 134 281 407 1.33e-12 67.4
Msa0483380 AT1G51620.2 48.193 83 42 1 164 246 37 118 3.36e-15 74.3
Msa0483380 AT5G16900.2 48.529 68 35 0 166 233 565 632 1.59e-14 73.2
Msa0483380 AT5G16900.2 30.636 173 92 6 19 163 269 441 4.33e-13 68.9
Msa0483380 AT1G10620.1 41.111 90 51 1 150 237 344 433 6.51e-14 71.2
Msa0483380 AT5G61350.1 36.752 117 67 3 137 246 481 597 2.17e-13 69.7
Msa0483380 AT5G28680.1 39.394 99 55 2 153 246 495 593 3.00e-13 69.3
Msa0483380 AT5G28680.2 39.394 99 55 2 153 246 495 593 3.00e-13 69.3
Msa0483380 AT3G04690.1 39.394 99 55 2 153 246 491 589 3.96e-13 68.9
Msa0483380 AT1G79620.3 41.758 91 50 2 150 237 611 701 4.18e-13 68.9
Msa0483380 AT1G79620.1 41.758 91 50 2 150 237 611 701 4.65e-13 68.9
Msa0483380 AT1G79620.2 41.758 91 50 2 150 237 611 701 4.76e-13 68.9
Msa0483380 AT1G79620.5 41.758 91 50 2 150 237 637 727 5.18e-13 68.6
Msa0483380 AT5G54590.1 34.167 120 72 1 134 246 66 185 9.96e-13 66.6
Msa0483380 AT1G23540.1 37.778 90 54 1 150 237 345 434 1.42e-12 67.4
Msa0483380 AT5G54590.3 33.600 125 76 1 129 246 61 185 1.43e-12 67.0
Msa0483380 AT5G54590.4 33.600 125 76 1 129 246 61 185 1.43e-12 67.0
Msa0483380 AT5G54590.2 33.600 125 76 1 129 246 61 185 1.43e-12 67.0
Msa0483380 AT1G23540.2 37.778 90 54 1 150 237 345 434 1.50e-12 67.0
Msa0483380 AT4G39110.1 39.506 81 47 1 168 246 518 598 1.68e-12 67.0
Msa0483380 AT4G32710.1 39.796 98 56 2 151 246 365 461 1.83e-12 67.0
Msa0483380 AT1G49270.1 36.471 85 52 1 164 246 324 408 2.24e-12 66.6
Msa0483380 AT3G24790.1 31.667 120 78 3 131 246 1 120 6.05e-12 65.1
Msa0483380 AT3G24790.2 31.667 120 78 3 131 246 19 138 6.44e-12 65.1
Msa0483380 AT3G24550.1 38.824 85 50 1 164 246 268 352 7.12e-12 65.1
Msa0483380 AT2G21480.1 37.037 81 49 1 168 246 517 597 7.84e-12 65.1
Msa0483380 AT1G70460.1 40.789 76 43 1 164 237 341 416 1.43e-11 64.3
Msa0483380 AT5G54380.1 32.941 85 55 1 164 246 498 582 1.54e-11 64.3
Msa0483380 AT2G37050.2 38.961 77 46 1 168 243 597 673 2.20e-11 63.9
Msa0483380 AT2G37050.4 38.961 77 46 1 168 243 598 674 2.24e-11 63.9
Msa0483380 AT2G37050.3 38.961 77 46 1 168 243 598 674 3.19e-11 63.5
Msa0483380 AT2G37050.1 38.961 77 46 1 168 243 597 673 3.24e-11 63.5
Msa0483380 AT3G18810.1 35.294 85 53 1 164 246 325 409 3.32e-11 63.2
Msa0483380 AT1G70450.1 36.364 88 54 1 152 237 25 112 3.33e-11 62.8
Msa0483380 AT4G23180.3 33.333 111 72 1 138 246 310 420 4.39e-11 62.8
Msa0483380 AT4G23180.1 33.333 111 72 1 138 246 310 420 5.62e-11 62.4
Msa0483380 AT4G23180.2 33.333 111 72 1 138 246 310 420 6.34e-11 62.4
Msa0483380 AT5G15730.1 36.170 94 55 1 153 246 98 186 7.31e-11 62.0
Msa0483380 AT3G24540.1 36.471 85 52 1 164 246 171 255 7.57e-11 62.0
Msa0483380 AT5G56890.1 35.556 90 56 1 159 246 706 795 7.66e-11 62.4
Msa0483380 AT1G52290.2 37.647 85 51 1 164 246 131 215 7.70e-11 61.6
Msa0483380 AT3G51550.1 34.000 100 63 2 150 246 510 609 7.85e-11 62.4
Msa0483380 AT5G15730.3 36.170 94 55 1 153 246 98 186 8.05e-11 62.0
Msa0483380 AT5G15730.2 36.170 94 55 1 153 246 98 186 8.05e-11 62.0

Find 53 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTCCAGCGGTTTAAT+TGG 0.192363 3_4:+120862 Msa0483380:intron
TTTGATTTGCATCGAGCTTC+TGG 0.227717 3_4:-119167 None:intergenic
AAATACTTGACAGGTCTTAT+AGG 0.242464 3_4:+122586 Msa0483380:CDS
CTAAATGTGAAGTCAACTTA+TGG 0.264476 3_4:+120665 Msa0483380:intron
TTAATTGGAACTATAGCTTC+TGG 0.326254 3_4:+120877 Msa0483380:CDS
AATACTTGACAGGTCTTATA+GGG 0.376188 3_4:+122587 Msa0483380:CDS
CAATGTCGTCGAGACATATA+TGG 0.381553 3_4:+119347 Msa0483380:CDS
TAAATGTGAAGTCAACTTAT+GGG 0.390794 3_4:+120666 Msa0483380:intron
TACCAACATAGCTGCAGTTT+AGG 0.411492 3_4:-120744 None:intergenic
CTTATGGGATCAAGAGAAAC+TGG 0.413837 3_4:+120681 Msa0483380:CDS
GAAGATACAAAGGAATGAAT+AGG 0.428109 3_4:-119236 None:intergenic
TTTGAAAAGGTTGTGGAGAA+AGG 0.428970 3_4:+122315 Msa0483380:CDS
CAGAAACTTTGAAAAGGTTG+TGG 0.430911 3_4:+122308 Msa0483380:CDS
ATATTCTATTGACTTCAGAT+TGG 0.437899 3_4:-120905 None:intergenic
CTAAGCTGCCAGTGACAACT+TGG 0.444235 3_4:+119080 None:intergenic
TAATTGGAACTATAGCTTCT+GGG 0.444237 3_4:+120878 Msa0483380:CDS
GTGAAACGAAGTTGGAACTT+TGG 0.448803 3_4:+119286 Msa0483380:CDS
GTTGTGGAGAAAGGAGCATC+TGG 0.469808 3_4:+122324 Msa0483380:CDS
CTTATAGGGTATTGTGATGA+TGG 0.472954 3_4:+122601 Msa0483380:CDS
GGCCTAAACTGCAGCTATGT+TGG 0.481031 3_4:+120742 Msa0483380:CDS
GGCATTATACTTGGGAAGGA+AGG 0.485026 3_4:-119109 None:intergenic
ATATGTGGAGGCATTATACT+TGG 0.487647 3_4:-119118 None:intergenic
CTGGAACAGTCTACCATGGC+TGG 0.488403 3_4:+122343 Msa0483380:CDS
GGAAAATTCCAAGTTGTCAC+TGG 0.491907 3_4:-119088 None:intergenic
AGTTATTAGTGAAACGAAGT+TGG 0.493413 3_4:+119278 Msa0483380:CDS
GTACTCCAGTGTCTTACTTG+TGG 0.508313 3_4:+120716 Msa0483380:CDS
CATTACCAGAAACTTTGAAA+AGG 0.512003 3_4:+122302 Msa0483380:CDS
ACTTACAAGTATATGATCCT+TGG 0.514030 3_4:-120775 None:intergenic
AAGTAAGACACTGGAGTACA+AGG 0.521279 3_4:-120712 None:intergenic
ACTCTAGATTAGAGCCATGT+TGG 0.527280 3_4:-122626 None:intergenic
GTTCATCATAAATACTTGAC+AGG 0.530148 3_4:+122577 Msa0483380:CDS
CCAGTGTCTTACTTGTGGAA+TGG 0.545016 3_4:+120721 Msa0483380:CDS
TAATAACTGATATATAATAC+AGG 0.545081 3_4:-119263 None:intergenic
GTCTCGACGACATTGAATAG+TGG 0.551109 3_4:-119339 None:intergenic
CAGATATCCTTGAGTTGATG+AGG 0.561128 3_4:-122406 None:intergenic
GTGCATGTACACATAATATG+TGG 0.566614 3_4:-119133 None:intergenic
TGGGATCAAGAGAAACTGGC+AGG 0.578914 3_4:+120685 Msa0483380:CDS
CTATCTTCCTCATCAACTCA+AGG 0.579253 3_4:+122399 Msa0483380:CDS
TGGAGGCATTATACTTGGGA+AGG 0.584867 3_4:-119113 None:intergenic
AAACTGCAGCTATGTTGGTA+CGG 0.585202 3_4:+120747 Msa0483380:CDS
TACAGGTTCTGAAGATACAA+AGG 0.605212 3_4:-119246 None:intergenic
CCATTCCACAAGTAAGACAC+TGG 0.617935 3_4:-120721 None:intergenic
CGTCGAGACATATATGGCAA+AGG 0.622385 3_4:+119353 Msa0483380:CDS
TATGTGGAGGCATTATACTT+GGG 0.630511 3_4:-119117 None:intergenic
TATCATGATCAATCCAGCCA+TGG 0.635701 3_4:-122356 None:intergenic
TCAGAAACATATCAAACCGA+TGG 0.637155 3_4:+119387 Msa0483380:CDS
TCGACGACATTGAATAGTGG+TGG 0.637303 3_4:-119336 None:intergenic
ATATCTGCAATTTCAAGCAG+AGG 0.641697 3_4:+122422 Msa0483380:CDS
CATGTACACATAATATGTGG+AGG 0.657421 3_4:-119130 None:intergenic
GCATCTGGAACAGTCTACCA+TGG 0.666857 3_4:+122339 Msa0483380:CDS
ATGTTGGTACGGATTCGCCA+AGG 0.677061 3_4:+120758 Msa0483380:CDS
CTGGATTGATCATGATACTG+AGG 0.708911 3_4:+122362 Msa0483380:CDS
TTGTGATGATGGCACCAACA+TGG 0.719558 3_4:+122612 Msa0483380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATTTTTATTAAA+TGG + chr3_4:119676-119695 Msa0483380:intron 0.0%
!!! TTTTTTATTTTTATTTTAAT+TGG - chr3_4:120417-120436 None:intergenic 0.0%
!!! AAAATAAAAAAACAGTTTTT+TGG + chr3_4:120011-120030 Msa0483380:intron 10.0%
!!! TAAATATTTTTCTGATTTTT+TGG + chr3_4:120336-120355 Msa0483380:intron 10.0%
!!! TTTTATTTCTTCTTTATATT+TGG + chr3_4:121598-121617 Msa0483380:intron 10.0%
!! ATTTATATATCAAAAATGTA+TGG + chr3_4:121792-121811 Msa0483380:intron 10.0%
!! ATAAAAATAGATGATTTAAT+TGG + chr3_4:122072-122091 Msa0483380:intron 10.0%
!! TAAAAATAGATGATTTAATT+GGG + chr3_4:122073-122092 Msa0483380:intron 10.0%
!! TAATAACTGATATATAATAC+AGG - chr3_4:119266-119285 None:intergenic 15.0%
!! TTTAAAAATAAAATCTGATG+TGG - chr3_4:119722-119741 None:intergenic 15.0%
!!! ATTTTTCTACTAAAAAAATC+TGG - chr3_4:119990-120009 None:intergenic 15.0%
!!! TACTTCGTTTTTTTTAAATT+AGG - chr3_4:120120-120139 None:intergenic 15.0%
!!! TCTATTTTTATTCTATTGTT+CGG - chr3_4:122063-122082 None:intergenic 15.0%
!! ATAATTTGACAATTTATGAT+CGG + chr3_4:122201-122220 Msa0483380:intron 15.0%
!!! AGTTCAACATTTTTGTAAAT+GGG + chr3_4:119196-119215 Msa0483380:CDS 20.0%
!! TCTGAAAAAAAAAATTTACG+AGG - chr3_4:119599-119618 None:intergenic 20.0%
!!! GGAAAAAAAATAATTTTACG+AGG + chr3_4:120503-120522 Msa0483380:intron 20.0%
!! TCAATTAATTATATTGCTTG+AGG + chr3_4:121124-121143 Msa0483380:intron 20.0%
!!! TTTTATTTACTGAAGAAACT+TGG + chr3_4:121199-121218 Msa0483380:intron 20.0%
!! AAAACTATACAAATTATGCA+AGG - chr3_4:121302-121321 None:intergenic 20.0%
!! TAGCCAAGTAATATATTAAT+GGG - chr3_4:121338-121357 None:intergenic 20.0%
!! AACTTTAAATAGAACATACT+TGG - chr3_4:121717-121736 None:intergenic 20.0%
!! GAGTTCAACATTTTTGTAAA+TGG + chr3_4:119195-119214 Msa0483380:CDS 25.0%
! AACTAAATAGTACATACCAT+CGG - chr3_4:119406-119425 None:intergenic 25.0%
! TTCTTACAATCTTATTCGTA+TGG + chr3_4:119502-119521 Msa0483380:intron 25.0%
! TCTTACAATCTTATTCGTAT+GGG + chr3_4:119503-119522 Msa0483380:intron 25.0%
! GGTAAGACATTTAAAAATTC+TGG - chr3_4:120099-120118 None:intergenic 25.0%
! GAAATAACCTATATTACAGA+GGG + chr3_4:120564-120583 Msa0483380:intron 25.0%
! TAGCATCAACTATTATCATA+AGG - chr3_4:120643-120662 None:intergenic 25.0%
! TAAATGTGAAGTCAACTTAT+GGG + chr3_4:120666-120685 Msa0483380:intron 25.0%
! TCATATACTTGTAAGTTATG+TGG + chr3_4:120782-120801 Msa0483380:intron 25.0%
!!! ATATTCTATTGACTTCAGAT+TGG - chr3_4:120908-120927 None:intergenic 25.0%
! GATCACAAAATAGAATGTTA+AGG + chr3_4:120984-121003 Msa0483380:intron 25.0%
!!! CAAGGTTTATTTTTCTTTTG+GGG - chr3_4:121284-121303 None:intergenic 25.0%
!!! GCAAGGTTTATTTTTCTTTT+GGG - chr3_4:121285-121304 None:intergenic 25.0%
!!! TGCAAGGTTTATTTTTCTTT+TGG - chr3_4:121286-121305 None:intergenic 25.0%
! TACCCCATTAATATATTACT+TGG + chr3_4:121332-121351 Msa0483380:intron 25.0%
! AGCCAAGTAATATATTAATG+GGG - chr3_4:121337-121356 None:intergenic 25.0%
! GTAGCCAAGTAATATATTAA+TGG - chr3_4:121339-121358 None:intergenic 25.0%
!! TTGTCGCTTCATTAAATATA+AGG + chr3_4:121512-121531 Msa0483380:intron 25.0%
!! AGCTAATACAATTTTTACGA+GGG - chr3_4:121626-121645 None:intergenic 25.0%
!! AAGCTAATACAATTTTTACG+AGG - chr3_4:121627-121646 None:intergenic 25.0%
!!! GTGTGATTTTTAAGATAATC+AGG + chr3_4:122156-122175 Msa0483380:intron 25.0%
! ACAATTTATGATCGGTAAAT+TGG + chr3_4:122209-122228 Msa0483380:intron 25.0%
GAAGATACAAAGGAATGAAT+AGG - chr3_4:119239-119258 None:intergenic 30.0%
AGTTATTAGTGAAACGAAGT+TGG + chr3_4:119278-119297 Msa0483380:CDS 30.0%
CATGTAAATAATGAAGTGCA+TGG - chr3_4:119477-119496 None:intergenic 30.0%
CATGCACTTCATTATTTACA+TGG + chr3_4:119475-119494 Msa0483380:intron 30.0%
ACCAAACCGAAAATTTCTTA+GGG - chr3_4:119570-119589 None:intergenic 30.0%
AACCAAACCGAAAATTTCTT+AGG - chr3_4:120531-120550 None:intergenic 30.0%
TGGAAAATTAATTTCACACG+TGG - chr3_4:119702-119721 None:intergenic 30.0%
! TGTAAAATGTTTTTCACACG+TGG + chr3_4:120391-120410 Msa0483380:intron 30.0%
AAACCAAACCGAAAATTTCT+TGG + chr3_4:120530-120549 Msa0483380:intron 30.0%
AACCAAACCGAAAATTTCTT+GGG + chr3_4:120531-120550 Msa0483380:intron 30.0%
GGAAATAACCTATATTACAG+AGG + chr3_4:120563-120582 Msa0483380:intron 30.0%
!!! GTTTTTTCCCTCTGTAATAT+AGG - chr3_4:120574-120593 None:intergenic 30.0%
CTATACAGTGAATACGAATA+GGG - chr3_4:120605-120624 None:intergenic 30.0%
ACTATACAGTGAATACGAAT+AGG - chr3_4:120606-120625 None:intergenic 30.0%
! CATAAGTTGACTTCACATTT+AGG - chr3_4:120667-120686 None:intergenic 30.0%
CTAAATGTGAAGTCAACTTA+TGG + chr3_4:120665-120684 Msa0483380:intron 30.0%
ACTTACAAGTATATGATCCT+TGG - chr3_4:120778-120797 None:intergenic 30.0%
TTAATTGGAACTATAGCTTC+TGG + chr3_4:120877-120896 Msa0483380:CDS 30.0%
TAATTGGAACTATAGCTTCT+GGG + chr3_4:120878-120897 Msa0483380:CDS 30.0%
TTGTCGAATAACAATTTGAC+TGG + chr3_4:121009-121028 Msa0483380:intron 30.0%
ATCTTCATCTAAGTTATCCT+AGG + chr3_4:121088-121107 Msa0483380:intron 30.0%
ATTTACTGAAGAAACTTGGA+AGG + chr3_4:121203-121222 Msa0483380:intron 30.0%
! GCTACTCTAAACAATTTTGT+TGG + chr3_4:121354-121373 Msa0483380:intron 30.0%
! CTAATACAATTTTTACGAGG+GGG - chr3_4:121624-121643 None:intergenic 30.0%
! GCTAATACAATTTTTACGAG+GGG - chr3_4:121625-121644 None:intergenic 30.0%
! ATTACTGTATGTGCAAGTTT+TGG + chr3_4:121850-121869 Msa0483380:intron 30.0%
ATTCATGCAACAAGAGAAAT+GGG + chr3_4:121899-121918 Msa0483380:intron 30.0%
! CATTACCAGAAACTTTGAAA+AGG + chr3_4:122302-122321 Msa0483380:CDS 30.0%
ATGAACTACAGCAAAAAGTT+TGG - chr3_4:122563-122582 None:intergenic 30.0%
GTTCATCATAAATACTTGAC+AGG + chr3_4:122577-122596 Msa0483380:CDS 30.0%
! AAATACTTGACAGGTCTTAT+AGG + chr3_4:122586-122605 Msa0483380:CDS 30.0%
! AATACTTGACAGGTCTTATA+GGG + chr3_4:122587-122606 Msa0483380:CDS 30.0%
!! TATGTGGAGGCATTATACTT+GGG - chr3_4:119120-119139 None:intergenic 35.0%
!! ATATGTGGAGGCATTATACT+TGG - chr3_4:119121-119140 None:intergenic 35.0%
CATGTACACATAATATGTGG+AGG - chr3_4:119133-119152 None:intergenic 35.0%
GTGCATGTACACATAATATG+TGG - chr3_4:119136-119155 None:intergenic 35.0%
!! TACAGGTTCTGAAGATACAA+AGG - chr3_4:119249-119268 None:intergenic 35.0%
TCAGAAACATATCAAACCGA+TGG + chr3_4:119387-119406 Msa0483380:CDS 35.0%
! TTCCTTTTGTAGTCATTTCC+AGG + chr3_4:119538-119557 Msa0483380:intron 35.0%
AACCTGGAAATGACTACAAA+AGG - chr3_4:119543-119562 None:intergenic 35.0%
AAACCGAAAATTTCTTAGGG+GGG - chr3_4:119567-119586 None:intergenic 35.0%
CAAACCGAAAATTTCTTAGG+GGG - chr3_4:119568-119587 None:intergenic 35.0%
CCAAACCGAAAATTTCTTAG+GGG - chr3_4:119569-119588 None:intergenic 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG - chr3_4:120466-120485 None:intergenic 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG - chr3_4:120465-120484 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG - chr3_4:120461-120480 None:intergenic 35.0%
ACTCAGCAAAATGTAATACG+TGG + chr3_4:119639-119658 Msa0483380:intron 35.0%
ACTCAGCAAAATGTAATACG+TGG - chr3_4:119639-119658 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG + chr3_4:120461-120480 Msa0483380:intron 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG + chr3_4:120465-120484 Msa0483380:intron 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG + chr3_4:120466-120485 Msa0483380:intron 35.0%
! GTTTCCTCCCAAGAAATTTT+CGG - chr3_4:120541-120560 None:intergenic 35.0%
AAATTTCTTGGGAGGAAACT+TGG + chr3_4:120542-120561 Msa0483380:intron 35.0%
AGTTCCTGAAGGATTATCAT+CGG - chr3_4:120828-120847 None:intergenic 35.0%
TTAACTTCCAGCGGTTTAAT+TGG + chr3_4:120862-120881 Msa0483380:intron 35.0%
TATAGTTCCAATTAAACCGC+TGG - chr3_4:120872-120891 None:intergenic 35.0%
TTGAATAATCAAGTCAGCCT+AGG - chr3_4:121108-121127 None:intergenic 35.0%
TACTATTCTTTGAACGCACA+AGG - chr3_4:121685-121704 None:intergenic 35.0%
ACTAACACATCACGTACAAA+AGG - chr3_4:121762-121781 None:intergenic 35.0%
GATTCATGCAACAAGAGAAA+TGG + chr3_4:121898-121917 Msa0483380:intron 35.0%
GTTCCATTAGTAGTATCAGT+TGG + chr3_4:121934-121953 Msa0483380:intron 35.0%
ATATACTACAAGAGACACCA+AGG + chr3_4:122000-122019 Msa0483380:intron 35.0%
GCTTTCTATTCCATTGACAT+TGG + chr3_4:122031-122050 Msa0483380:intron 35.0%
TCTATTCCATTGACATTGGT+AGG + chr3_4:122035-122054 Msa0483380:intron 35.0%
! CACAACCTTTTCAAAGTTTC+TGG - chr3_4:122310-122329 None:intergenic 35.0%
! CAGAAACTTTGAAAAGGTTG+TGG + chr3_4:122308-122327 Msa0483380:CDS 35.0%
TTTGAAAAGGTTGTGGAGAA+AGG + chr3_4:122315-122334 Msa0483380:CDS 35.0%
ATATCTGCAATTTCAAGCAG+AGG + chr3_4:122422-122441 Msa0483380:CDS 35.0%
CTTGTGAACTGAAGGAATTA+TGG + chr3_4:122516-122535 Msa0483380:intron 35.0%
!! CTTATAGGGTATTGTGATGA+TGG + chr3_4:122601-122620 Msa0483380:CDS 35.0%
GGAAAATTCCAAGTTGTCAC+TGG - chr3_4:119091-119110 None:intergenic 40.0%
!! TTTGATTTGCATCGAGCTTC+TGG - chr3_4:119170-119189 None:intergenic 40.0%
GTGAAACGAAGTTGGAACTT+TGG + chr3_4:119286-119305 Msa0483380:CDS 40.0%
CAATGTCGTCGAGACATATA+TGG + chr3_4:119347-119366 Msa0483380:CDS 40.0%
! TTCCCCCCCTAAGAAATTTT+CGG + chr3_4:119561-119580 Msa0483380:intron 40.0%
AACCGAAAATTTCTTAGGGG+GGG - chr3_4:119566-119585 None:intergenic 40.0%
! CCCCTAAGAAATTTTCGGTT+TGG + chr3_4:119566-119585 Msa0483380:intron 40.0%
!! ACATTTTGCTGAGTTGGATG+GGG - chr3_4:120467-120486 None:intergenic 40.0%
!! ACATTTTGCTGAGTTGGATG+GGG + chr3_4:120467-120486 Msa0483380:intron 40.0%
! CTCCCAAGAAATTTTCGGTT+TGG - chr3_4:120536-120555 None:intergenic 40.0%
CAAACCGAAAATTTCTTGGG+AGG + chr3_4:120534-120553 Msa0483380:intron 40.0%
CTTATGGGATCAAGAGAAAC+TGG + chr3_4:120681-120700 Msa0483380:CDS 40.0%
AAGTAAGACACTGGAGTACA+AGG - chr3_4:120715-120734 None:intergenic 40.0%
TACCAACATAGCTGCAGTTT+AGG - chr3_4:120747-120766 None:intergenic 40.0%
AAACTGCAGCTATGTTGGTA+CGG + chr3_4:120747-120766 Msa0483380:CDS 40.0%
!! TTCTGGAACTTAACTTCCAG+CGG + chr3_4:120853-120872 Msa0483380:intron 40.0%
AAGGAAATCAGCTATCAGCA+GGG + chr3_4:121222-121241 Msa0483380:intron 40.0%
GCGAATCCCTTCATAACAAT+GGG + chr3_4:121245-121264 Msa0483380:intron 40.0%
CGAATCCCTTCATAACAATG+GGG + chr3_4:121246-121265 Msa0483380:intron 40.0%
TGCTACCCCATTGTTATGAA+GGG - chr3_4:121254-121273 None:intergenic 40.0%
ATGCTACCCCATTGTTATGA+AGG - chr3_4:121255-121274 None:intergenic 40.0%
TCATAACAATGGGGTAGCAT+TGG + chr3_4:121255-121274 Msa0483380:intron 40.0%
TCTCTTGTTGCATGAATCTG+AGG - chr3_4:121896-121915 None:intergenic 40.0%
CAACAAGAGAAATGGGAGTA+AGG + chr3_4:121906-121925 Msa0483380:intron 40.0%
CCACCAACTGATACTACTAA+TGG - chr3_4:121940-121959 None:intergenic 40.0%
CCATTAGTAGTATCAGTTGG+TGG + chr3_4:121937-121956 Msa0483380:intron 40.0%
ATAGAAAGCCAAACCTACCT+TGG - chr3_4:122020-122039 None:intergenic 40.0%
TATCATGATCAATCCAGCCA+TGG - chr3_4:122359-122378 None:intergenic 40.0%
CTGGATTGATCATGATACTG+AGG + chr3_4:122362-122381 Msa0483380:CDS 40.0%
CTATCTTCCTCATCAACTCA+AGG + chr3_4:122399-122418 Msa0483380:CDS 40.0%
!! CAGATATCCTTGAGTTGATG+AGG - chr3_4:122409-122428 None:intergenic 40.0%
ACGATGTTCTTGTGAACTGA+AGG + chr3_4:122508-122527 Msa0483380:intron 40.0%
! GGTTTTCCTTTCTGATTCAC+AGG + chr3_4:122537-122556 Msa0483380:intron 40.0%
GGCATTATACTTGGGAAGGA+AGG - chr3_4:119112-119131 None:intergenic 45.0%
!! TGGAGGCATTATACTTGGGA+AGG - chr3_4:119116-119135 None:intergenic 45.0%
TCGACGACATTGAATAGTGG+TGG - chr3_4:119339-119358 None:intergenic 45.0%
GTCTCGACGACATTGAATAG+TGG - chr3_4:119342-119361 None:intergenic 45.0%
CGTCGAGACATATATGGCAA+AGG + chr3_4:119353-119372 Msa0483380:CDS 45.0%
!! CATTTTGCTGAGTTGGATGG+GGG - chr3_4:120468-120487 None:intergenic 45.0%
!! TGTAATACGTGGCGCTGATT+TGG + chr3_4:119650-119669 Msa0483380:intron 45.0%
GTACTCCAGTGTCTTACTTG+TGG + chr3_4:120716-120735 Msa0483380:CDS 45.0%
CCATTCCACAAGTAAGACAC+TGG - chr3_4:120724-120743 None:intergenic 45.0%
CCAGTGTCTTACTTGTGGAA+TGG + chr3_4:120721-120740 Msa0483380:CDS 45.0%
TACGCCGATGATAATCCTTC+AGG + chr3_4:120821-120840 Msa0483380:intron 45.0%
CCAGAAGCTATAGTTCCTGA+AGG - chr3_4:120839-120858 None:intergenic 45.0%
CCTTCAGGAACTATAGCTTC+TGG + chr3_4:120836-120855 Msa0483380:intron 45.0%
CGTAGCTGAGATAGGAAATC+AGG - chr3_4:121042-121061 None:intergenic 45.0%
! TCAAGAAGCGTAGCTGAGAT+AGG - chr3_4:121050-121069 None:intergenic 45.0%
GAAGGAAATCAGCTATCAGC+AGG + chr3_4:121221-121240 Msa0483380:intron 45.0%
AGGAAATCAGCTATCAGCAG+GGG + chr3_4:121223-121242 Msa0483380:intron 45.0%
GGCGAATCCCTTCATAACAA+TGG + chr3_4:121244-121263 Msa0483380:intron 45.0%
! AATTGTATTAGCTTCGCCGC+TGG + chr3_4:121633-121652 Msa0483380:intron 45.0%
GAATTGATCCTGATAGCCAG+CGG - chr3_4:121652-121671 None:intergenic 45.0%
GAACGCACAAGGAGTTGTAT+TGG - chr3_4:121674-121693 None:intergenic 45.0%
ACTACAAGAGACACCAAGGT+AGG + chr3_4:122004-122023 Msa0483380:intron 45.0%
AAGAGACACCAAGGTAGGTT+TGG + chr3_4:122009-122028 Msa0483380:intron 45.0%
GTTTGGCCTGTGAATCAGAA+AGG - chr3_4:122546-122565 None:intergenic 45.0%
!! TTGTGATGATGGCACCAACA+TGG + chr3_4:122612-122631 Msa0483380:CDS 45.0%
!!! TTTAATATTTTTTTAGTTTT+GGG - chr3_4:119779-119798 None:intergenic 5.0%
!!! TTTTAATATTTTTTTAGTTT+TGG - chr3_4:119780-119799 None:intergenic 5.0%
!!! TTAATTTTTTAAAAAAGAAT+TGG + chr3_4:120207-120226 Msa0483380:intron 5.0%
!!! TAATTTTTTAAAAAAGAATT+GGG + chr3_4:120208-120227 Msa0483380:intron 5.0%
AATTTCTTAGGGGGGGAACC+TGG - chr3_4:119559-119578 None:intergenic 50.0%
! TTTGCTGAGTTGGATGGGGT+AGG + chr3_4:120471-120490 Msa0483380:intron 50.0%
! TTGCTGAGTTGGATGGGGTA+GGG + chr3_4:120472-120491 Msa0483380:intron 50.0%
TGGGATCAAGAGAAACTGGC+AGG + chr3_4:120685-120704 Msa0483380:CDS 50.0%
GGCCTAAACTGCAGCTATGT+TGG + chr3_4:120742-120761 Msa0483380:CDS 50.0%
ATGTTGGTACGGATTCGCCA+AGG + chr3_4:120758-120777 Msa0483380:CDS 50.0%
TCGGCTCCTACCAATGTCAA+TGG - chr3_4:122044-122063 None:intergenic 50.0%
!! GTTGTGGAGAAAGGAGCATC+TGG + chr3_4:122324-122343 Msa0483380:CDS 50.0%
! GCATCTGGAACAGTCTACCA+TGG + chr3_4:122339-122358 Msa0483380:CDS 50.0%
! TTGCTGAGTTGGATGGGGGA+GGG - chr3_4:119628-119647 None:intergenic 55.0%
! TTTGCTGAGTTGGATGGGGG+AGG - chr3_4:119629-119648 None:intergenic 55.0%
! TGCTGAGTTGGATGGGGTAG+GGG + chr3_4:120473-120492 Msa0483380:intron 55.0%
!!! GGATGGGGTAGGGGGTATTT+TGG + chr3_4:120482-120501 Msa0483380:intron 55.0%
CTGGAACAGTCTACCATGGC+TGG + chr3_4:122343-122362 Msa0483380:CDS 55.0%
! TGCTGAGTTGGATGGGGGAG+GGG - chr3_4:119627-119646 None:intergenic 60.0%
! GCTGAGTTGGATGGGGTAGG+GGG + chr3_4:120474-120493 Msa0483380:intron 60.0%
! TAGCTTCGCCGCTGGCTATC+AGG + chr3_4:121641-121660 Msa0483380:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 119087 122645 119087 ID=Msa0483380;Name=Msa0483380
chr3_4 mRNA 119087 122645 119087 ID=Msa0483380-mRNA-1;Parent=Msa0483380;Name=Msa0483380-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0|0|1|0.5|0.6|5|0|246
chr3_4 exon 119087 119408 119087 ID=Msa0483380-mRNA-1:exon:18;Parent=Msa0483380-mRNA-1
chr3_4 exon 120677 120791 120677 ID=Msa0483380-mRNA-1:exon:19;Parent=Msa0483380-mRNA-1
chr3_4 exon 120873 120929 120873 ID=Msa0483380-mRNA-1:exon:20;Parent=Msa0483380-mRNA-1
chr3_4 exon 122284 122443 122284 ID=Msa0483380-mRNA-1:exon:21;Parent=Msa0483380-mRNA-1
chr3_4 exon 122559 122645 122559 ID=Msa0483380-mRNA-1:exon:22;Parent=Msa0483380-mRNA-1
chr3_4 CDS 119087 119408 119087 ID=Msa0483380-mRNA-1:cds;Parent=Msa0483380-mRNA-1
chr3_4 CDS 120677 120791 120677 ID=Msa0483380-mRNA-1:cds;Parent=Msa0483380-mRNA-1
chr3_4 CDS 120873 120929 120873 ID=Msa0483380-mRNA-1:cds;Parent=Msa0483380-mRNA-1
chr3_4 CDS 122284 122443 122284 ID=Msa0483380-mRNA-1:cds;Parent=Msa0483380-mRNA-1
chr3_4 CDS 122559 122645 122559 ID=Msa0483380-mRNA-1:cds;Parent=Msa0483380-mRNA-1
Gene Sequence

>Msa0483380

GCCAGTGACAACTTGGAATTTTCCTTCCTTCCCAAGTATAATGCCTCCACATATTATGTGTACATGCACTTTGCTGAAATCCAGAAGCTCGATGCAAATCAAATTAGAGAGTTCAACATTTTTGTAAATGGGCAGCTTATAAATAGTGACCTATTCATTCCTTTGTATCTTCAGAACCTGTATTATATATCAGTTATTAGTGAAACGAAGTTGGAACTTTGGTTTAATAAGACTAGTAGATCAACTCTTCCACCACTATTCAATGTCGTCGAGACATATATGGCAAAGGACTTCTTACAATCAGAAACATATCAAACCGATGTCAACTTATGGGATCAAGAGAAACTGGCAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGAATGGCCTAAACTGCAGCTATGTTGGTACGGATTCGCCAAGGATCATATACTTCGGTTTAATTGGAACTATAGCTTCTGGGATATCCAATCTGAAGTCAATAGAATATTTCTATGAAGAAGTGTTAAACATTACCAGAAACTTTGAAAAGGTTGTGGAGAAAGGAGCATCTGGAACAGTCTACCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGCTATCTTCCTCATCAACTCAAGGATATCTGCAATTTCAAGCAGAGGCCAAACTTTTTGCTGTAGTTCATCATAAATACTTGACAGGTCTTATAGGGTATTGTGATGATGGCACCAACATGGCTCTAATCTAG
Protein sequence

>Msa0483380

ASDNLEFSFLPKYNASTYYVYMHFAEIQKLDANQIREFNIFVNGQLINSDLFIPLYLQNLYYISVISETKLELWFNKTSRSTLPPLFNVVETYMAKDFLQSETYQTDVNLWDQEKLAGDPCTPVSYLWNGLNCSYVGTDSPRIIYFGLIGTIASGISNLKSIEYFYEEVLNITRNFEKVVEKGASGTVYHGWIDHDTEVAVKMLSSSSTQGYLQFQAEAKLFAVVHHKYLTGLIGYCDDGTNMALI*