AlfalfaGEDB | Msa0484080

M. sativa cultivar zhongmu-4 / Msa0484080

KEGG: K10875
GO: -
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0484080	KEH22459.1	80.998	421	65	9	1	413	1	414	3.29e-157	518
Msa0484080	KEH22459.1	91.083	942	73	2	453	1384	299	1239	0.0	1731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0484080	sp\|F4I8S3\|CLSY3_ARATH	47.786	768	349	15	640	1379	658	1401	0.0	671

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0484080	A0A072TY92	80.998	421	65	9	1	413	1	414	1.57e-157	518
Msa0484080	A0A072TY92	91.083	942	73	2	453	1384	299	1239	0.0	1731

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TFs/TRs:

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Gene ID	Type	Classification
Msa0484080	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0484080	MtrunA17_Chr7g0233021	91.083	942	73	2	453	1384	299	1239	0.0	1731
Msa0484080	MtrunA17_Chr7g0233021	80.998	421	65	9	1	413	1	414	3.03e-161	518
Msa0484080	MtrunA17_Chr7g0233031	59.416	1439	328	27	11	1382	1	1250	0.0	1403
Msa0484080	MtrunA17_Chr4g0047081	72.901	941	216	11	453	1378	322	1238	0.0	1307
Msa0484080	MtrunA17_Chr4g0047081	64.955	448	89	8	11	413	1	425	8.78e-125	418
Msa0484080	MtrunA17_Chr7g0232971	66.771	960	260	18	469	1383	357	1302	0.0	1194
Msa0484080	MtrunA17_Chr7g0232971	36.699	515	188	17	1	413	1	479	1.73e-37	154
Msa0484080	MtrunA17_Chr7g0225791	66.246	951	263	17	467	1378	357	1288	0.0	1162
Msa0484080	MtrunA17_Chr7g0225791	38.028	213	81	10	47	245	3	178	6.08e-16	84.0
Msa0484080	MtrunA17_Chr7g0232991	73.556	658	150	10	745	1384	16	667	0.0	915

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0484080	AT1G05490.1	47.786	768	349	15	640	1379	658	1401	0.0	671
Msa0484080	AT3G24340.1	46.505	744	338	12	650	1381	434	1129	0.0	643
Msa0484080	AT3G42670.2	35.076	727	413	21	675	1366	541	1243	8.93e-112	382
Msa0484080	AT3G42670.3	35.076	727	413	21	675	1366	541	1243	8.93e-112	382
Msa0484080	AT3G42670.1	35.076	727	413	21	675	1366	541	1243	8.93e-112	382
Msa0484080	AT3G42670.4	35.027	728	414	21	675	1366	541	1245	1.56e-110	379
Msa0484080	AT5G20420.1	33.748	723	428	16	675	1366	547	1249	7.39e-105	363
Msa0484080	AT2G16390.2	29.924	655	347	20	712	1331	273	850	1.00e-78	280
Msa0484080	AT2G16390.1	29.924	655	347	20	712	1331	270	847	2.05e-78	279
Msa0484080	AT2G21450.3	30.347	692	376	25	677	1331	60	682	8.04e-77	271

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Find 290 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAGAAGAGATGA+AGG	0.421135	3_4:+1230743	Msa0484080:CDS
AAAAGTATCATGTTCACAGC+GGG	0.557970	3_4:-1231371	None:intergenic
AAAAGTTCAAAAGACCAAGG+AGG	0.714230	3_4:+1231082	Msa0484080:CDS
AAACAATGGAGAACAAAAGA+AGG	0.476489	3_4:+1230781	Msa0484080:CDS
AAAGAATGCCGATCCTCGAA+GGG	0.614798	3_4:+1232040	Msa0484080:CDS
AAAGACCAAGGAGGAAGAGG+AGG	0.614242	3_4:+1231091	Msa0484080:CDS
AAAGAGAAAACATGCAAGTG+CGG	0.636460	3_4:+1232445	Msa0484080:CDS
AAAGAGTGATGAAGAAGATA+AGG	0.443898	3_4:+1229053	Msa0484080:CDS
AAAGATCAATTTGTTAAAGG+AGG	0.527680	3_4:+1230690	Msa0484080:CDS
AAAGGAGGCTTAAATGTTGG+AGG	0.522785	3_4:+1230705	Msa0484080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAAGAATGTTCCGTTATT+TGG	+	chr3_4:1228955-1228974	Msa0484080:CDS	30.0%
AGTAAAAGAGAACCAAACAA+CGG	-	chr3_4:1229012-1229031	None:intergenic	30.0%
AAAGAGTGATGAAGAAGATA+AGG	+	chr3_4:1229053-1229072	Msa0484080:CDS	30.0%
AAGAGTGATGAAGAAGATAA+GGG	+	chr3_4:1229054-1229073	Msa0484080:CDS	30.0%
TTCATATTCATCATCATCGA+TGG	-	chr3_4:1229160-1229179	None:intergenic	30.0%
GATGATGAATATGAAGATGT+TGG	+	chr3_4:1229165-1229184	Msa0484080:CDS	30.0%
GAAGATTATGTTGTCAAAGA+GGG	+	chr3_4:1229408-1229427	Msa0484080:CDS	30.0%
AGTAAAAAGTGATGAAAGTG+AGG	+	chr3_4:1229431-1229450	Msa0484080:CDS	30.0%
GTAAAAAGTGATGAAAGTGA+GGG	+	chr3_4:1229432-1229451	Msa0484080:CDS	30.0%
ATCATCATCATCAACATAAG+AGG	-	chr3_4:1229640-1229659	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	1228940	1233723	1228940	ID=Msa0484080;Name=Msa0484080
chr3_4	mRNA	1228940	1233723	1228940	ID=Msa0484080-mRNA-1;Parent=Msa0484080;Name=Msa0484080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|4\|0\|1384
chr3_4	exon	1228940	1230238	1228940	ID=Msa0484080-mRNA-1:exon:323;Parent=Msa0484080-mRNA-1
chr3_4	exon	1230378	1231172	1230378	ID=Msa0484080-mRNA-1:exon:324;Parent=Msa0484080-mRNA-1
chr3_4	exon	1231337	1231471	1231337	ID=Msa0484080-mRNA-1:exon:325;Parent=Msa0484080-mRNA-1
chr3_4	exon	1231798	1233723	1231798	ID=Msa0484080-mRNA-1:exon:326;Parent=Msa0484080-mRNA-1
chr3_4	CDS	1228940	1230238	1228940	ID=Msa0484080-mRNA-1:cds;Parent=Msa0484080-mRNA-1
chr3_4	CDS	1230378	1231172	1230378	ID=Msa0484080-mRNA-1:cds;Parent=Msa0484080-mRNA-1
chr3_4	CDS	1231337	1231471	1231337	ID=Msa0484080-mRNA-1:cds;Parent=Msa0484080-mRNA-1
chr3_4	CDS	1231798	1233723	1231798	ID=Msa0484080-mRNA-1:cds;Parent=Msa0484080-mRNA-1

Gene Sequence

>Msa0484080

ATGGCTGGTTTTTCTAGTAAGAATGTTCCGTTATTTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTTCTCTTTTACTTGGTGGTTCATCAAAGCGGAGAAAGAGTGATGAAGAAGATAAGGGCCTGGAATATGTTTCTGGTTCTAAAAGAAGAAAGATGAACGAAGAGCCTTTTGTTGTTCCTGCAGATGCTGAGGTAGTTTCCATCGATGATGATGAATATGAAGATGTTGGTCAAGAAGGGTTGGAGCATAGTGATGAGAAGATGTCTGAGGGTGGTGTTGCAAGTGGAGGAAGTGGTGATTTTGATGCTGAAATTGCAAAGTTTGTTGATGAAAAGTGTGATAGGGCACAAGATAACCCGATTCCGATAAGTTCAGATGAGTATGGTGAAAGTGATGAAGAACTCTCTGTTGATTCTGATGCTAATAATGAAGAAGAAGAAAAAGAAAACGAAGATTATGTTGTCAAAGAGGGAGTAAAAAGTGATGAAAGTGAGGGAACTGGTAGGTTTTCTGATAAAGGTGAAAAGGTTATAATTGATTTGGATGATTCTGAAGAGAGTGAGGAGGATGAGGAGGATTCTGACGAGAGTGAAGCAAATGATTCTAGTGATGAGGATTTTGTAGTTGATGAGCCAAATGAGATTTCAGACAATGATGACAATGACTGTTCTTCTAGCTCCTCTTATGTTGATGATGATGATGATGCTGAGGAGGAGGAGAAGAAGAAAGAGGGTTATAGGAAAGATTTCAATGTGGTGGAAGAATTAGTAAGAAAGGTGAAGAGTAAAAAAAGTGGAATTTCTGAGAGCAATAATGGGGAGGTAAATGTTGAGAATAGTTCATCTTATGGTAATGATGATGAGGAGATGGTGAGAAAGGGGAGGGATAAGAAAAGTGGAATTTCTGAGAGGAAATGTGAGGAGGTAGAGAATGAGAATGGACCATCTTCCACAAATACTGATAAGTTGGATCATGCAGATCATGCTAGTGTTTCCTCTAGTACCTATGTGAAAAAGGGTTCTTCTTCTAAACTGAATGGAGTATCAGAGACATTGAAAGCAAAGAGTGTTGATGTGAAAGTGAAAAACGTCTCCGATGAAAGTGTGAATGTTGGAGCGAATGCCAAATCAAAAGATAATGTTGGTGATTCTGATCAAGGAAAAGATCAATATGTTGGTTTAGATGTTGGCGGAGTTTCTTTGGTTCAAACAAAGCAAGAGAATGAAGTGCTATGGGATGAATTGGATGAAGCCCTTAGAGAATCAGAAGCGGTATCTAAGAATGAAATGTCAGAGGGGAAAATAGCAAAAAGTGTAAATGTTGCCAAAGCCAAATTCAAATCCAAAGTCAAACCTAAGAAATATGAGGAGGTAGAGAAGGAGTTGGAGCATGCAGACCATGCTAGTGTTTCCTCCTGTACCATTGAGAAGAAGGGTAGTTCTTCTTCTAAACCGAATGGAGTATCAGAGACACTGAAACCAAAGAGTGTAGAAGGGAAAGTGAAAAATCTCTTTGATGAAAGTGTGAATATAAGAGTAAATGCCAAATCAAAAAACAAATCCAAAGAAAATGTTGGTGATTCTGATCGCGGAAAAGATCAATTTGTTAAAGGAGGCTTAAATGTTGGAGGAGTTTCTTTAGTTCAAAAAGAGAAAGAAGAGATGAAGGAATCAGATAAACAGAAAACAATGGAGAACAAAAGAAGGGATTATAAAGGTAGAGCTAACATCTGTAATGGTGAGAAGAAGGAATCTATTGATAACAATGGATTAAATCAGGGCGTCAAAAGCACACATTTTATGCGGAAGGAGTTGCGTTCACTCGAACACCTTGTTAAATGCTATTGGGAAAGAAAGAATACCATGAACAATGATTCAATTGTGTTGGAGGTCAACGACGATGGTGTTGGTCAGCAAGATACACGGCCACCACCAGTCTCTGTGGAGACACCTTGTGAACGGATATGGAGCCTTAAAAAGGTAGAAAAAGTTCAAAAGACCAAGGAGGAAGAGGAGGAGGAATTGTTATGGGATGAATTTGATACAGTCCGTAGAGAATCTGACGCTGAATCCATGATTGGAAATTTAGGAGAAAACGGAGGTTCATCATCCCGCTGTGAACATGATACTTTTCTCGACGAAGAGATTGGTCTATTTTGCAAATTGTGTCATGAGGTTGTTACTGAGATCAAATATATCTCACCACCTGTGGATGATAGATGTCCCAATGAAGGTTCCGGAAAGAGGGCTTCATTTGATGATTCAGTAAATGCCTCACTCTTTGATGGCTCTCAGTTCAATGTTTCCGATGGTGATTCAGATGCTAATTTGTTTCTTGAAGGCACAGTTTGGGACCTAATTCCGGATGTGAAAGAAAAATTATATCCTCATCAACAAGAAGGATTTGAATTCATTTGGAAAAACTTGGCAGGAAACATTGAGCTTCAAAAGTTAAAGAATGCCGATCCTCGAAGGGAAGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGTAAGACAAGGTTGACAATAGAGTTTCTCAAGGCATATTTGAAAGTTTTTCCGAGATGCTTGCCGATTATTGTTGCACCTGCAAGTTTGTTGCTTACTTGGGAATATGAGTTCAAAAAGTGGGACATAGGCGTTCCATTTCACAATTTGAACAACTCTGAGTTATCTGTTAAAGAGCATGACGATGTTGTTAATGCAAATAATTGGTCTAATACACGGCAAAGTACAGAGGAGACACGGATGATGAAACTGATTTCATGGTTCAAAGACAAGAGCATTCTGGGAATCAGTTACAGTTTGTACGAGAAGATAGCCGGAGGAGGGGAATCTGAAGACGGAGATGGGAAAAAGAGAAAACATGCAAGTGCGGATAAGAGAAAAGAAAACAGTTGTATGAGAAAGGTTTTACTTGAAACTCCTGGTTTGTTGGTTCTAGACGAAGGACATACACCGAGAAATAAGAATAGTCTTATTTGGAAGGTGTTGTCGAAAATTCAAACGCGGAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAATTTCTTGGAACTATACAACACTTTGAGCTTGGTGAGGCCTTCTTTTCATAAAACGATACCGCACGAGCTGAAAAAGTTTTGCCAGAAGCAGGAACATAAAAAAGCACCTAAAGAATGGAGTTGGGAACCGGTTTTGGGCAACACAACAGGTAATACTTCTGACGATAAGATCAAGCAATTGAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTACAAAAGAAGCTTCCTGGGTTAAGAGATTGTGTGCTGTGTTTGAAGCCGGACAGTTTTCATAAGCAAATTCTTGAGAGTTTTAAAAGTTCTCAAAACTCATTCATCTTTGAGAATAAGCAGACACTGGCGTCAATCCATCCGTCTCTTCTCCTCGAGTGCAAACTTTTAGAAGAAGAAGAATCTTTTGTTGACAAGGACCGTCTAGAAAAGCTTAGATTGGACCACAATGCAGGCGTCAAAACGAAGTTTCTGGTGGAGTTTGTTAGTCTTTGTGCTGCTCATAATGAGAAAGTTCTCGTGTTCAGCCAATTCCTCGATCCTTTACGCTTAATTATAGACCAATTAAACTCTGCTCTTAAATGGACTGAGGGGAAGGAAATTCTCTACATGTCTGGAGAGGTTAGGGACAGGCAATCCTTAATCCATAACTTCAATGATGAAAACAGCCAAGCGAAGATTCTCCTTGCATCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGAGCTTCTAGGGTTGTGCTACTCGATGTCGAATGGAATCCTTCAGTTGAAAAACAGGCCGTCAGCCGTGCTTATCGAATTGGACAGAAGAAGGTTGTTTACACATATCATCTGCTCACTCAAGGGACTAAAGAGTATGATAAATATTGCAAACAGGCGGAAAAGCACCGGTTGTCTGAACTAGTTTTTTCGGCTAAAAATGCCGATAATCATAATGAGCCGAAGAACTGTGCGGCAGACATTGAAGATAGAATTCTTGATCTAATGATTCGGCACGAAAATCTCAAAGACATGTTTGTTGAGTGTGTGGTACAGCCGAAGGAGCGAGAATTTGAGAGTTTTGGCTATTGA

Protein sequence

>Msa0484080

MAGFSSKNVPLFGVSSRTRSKNVPLFGSLLLGGSSKRRKSDEEDKGLEYVSGSKRRKMNEEPFVVPADAEVVSIDDDEYEDVGQEGLEHSDEKMSEGGVASGGSGDFDAEIAKFVDEKCDRAQDNPIPISSDEYGESDEELSVDSDANNEEEEKENEDYVVKEGVKSDESEGTGRFSDKGEKVIIDLDDSEESEEDEEDSDESEANDSSDEDFVVDEPNEISDNDDNDCSSSSSYVDDDDDAEEEEKKKEGYRKDFNVVEELVRKVKSKKSGISESNNGEVNVENSSSYGNDDEEMVRKGRDKKSGISERKCEEVENENGPSSTNTDKLDHADHASVSSSTYVKKGSSSKLNGVSETLKAKSVDVKVKNVSDESVNVGANAKSKDNVGDSDQGKDQYVGLDVGGVSLVQTKQENEVLWDELDEALRESEAVSKNEMSEGKIAKSVNVAKAKFKSKVKPKKYEEVEKELEHADHASVSSCTIEKKGSSSSKPNGVSETLKPKSVEGKVKNLFDESVNIRVNAKSKNKSKENVGDSDRGKDQFVKGGLNVGGVSLVQKEKEEMKESDKQKTMENKRRDYKGRANICNGEKKESIDNNGLNQGVKSTHFMRKELRSLEHLVKCYWERKNTMNNDSIVLEVNDDGVGQQDTRPPPVSVETPCERIWSLKKVEKVQKTKEEEEEELLWDEFDTVRRESDAESMIGNLGENGGSSSRCEHDTFLDEEIGLFCKLCHEVVTEIKYISPPVDDRCPNEGSGKRASFDDSVNASLFDGSQFNVSDGDSDANLFLEGTVWDLIPDVKEKLYPHQQEGFEFIWKNLAGNIELQKLKNADPRREGGCIISHAPGTGKTRLTIEFLKAYLKVFPRCLPIIVAPASLLLTWEYEFKKWDIGVPFHNLNNSELSVKEHDDVVNANNWSNTRQSTEETRMMKLISWFKDKSILGISYSLYEKIAGGGESEDGDGKKRKHASADKRKENSCMRKVLLETPGLLVLDEGHTPRNKNSLIWKVLSKIQTRKRIILSGTPFQNNFLELYNTLSLVRPSFHKTIPHELKKFCQKQEHKKAPKEWSWEPVLGNTTGNTSDDKIKQLKLLMDPFVHVHKGAILQKKLPGLRDCVLCLKPDSFHKQILESFKSSQNSFIFENKQTLASIHPSLLLECKLLEEEESFVDKDRLEKLRLDHNAGVKTKFLVEFVSLCAAHNEKVLVFSQFLDPLRLIIDQLNSALKWTEGKEILYMSGEVRDRQSLIHNFNDENSQAKILLASTRACSEGISLVGASRVVLLDVEWNPSVEKQAVSRAYRIGQKKVVYTYHLLTQGTKEYDKYCKQAEKHRLSELVFSAKNADNHNEPKNCAADIEDRILDLMIRHENLKDMFVECVVQPKEREFESFGY*