Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488150 | RHN65252.1 | 96.172 | 209 | 8 | 0 | 76 | 284 | 17 | 225 | 8.25e-145 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488150 | sp|Q9XIE1|SNL5_ARATH | 45.714 | 105 | 45 | 3 | 9 | 105 | 45 | 145 | 8.09e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488150 | A0A396II46 | 96.172 | 209 | 8 | 0 | 76 | 284 | 17 | 225 | 3.94e-145 | 421 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0488150 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488150 | MtrunA17_Chr3g0077901 | 96.172 | 209 | 8 | 0 | 76 | 284 | 17 | 225 | 7.59e-149 | 421 |
| Msa0488150 | MtrunA17_Chr3g0077851 | 94.180 | 189 | 11 | 0 | 96 | 284 | 1 | 189 | 1.45e-129 | 371 |
| Msa0488150 | MtrunA17_Chr4g0075971 | 66.667 | 279 | 84 | 3 | 14 | 284 | 180 | 457 | 2.90e-116 | 346 |
| Msa0488150 | MtrunA17_Chr3g0077801 | 74.257 | 202 | 52 | 0 | 83 | 284 | 4 | 205 | 1.63e-106 | 313 |
| Msa0488150 | MtrunA17_Chr6g0488101 | 55.396 | 278 | 103 | 4 | 23 | 283 | 25 | 298 | 1.05e-95 | 289 |
| Msa0488150 | MtrunA17_Chr6g0488271 | 58.333 | 252 | 96 | 3 | 37 | 283 | 11 | 258 | 1.08e-94 | 285 |
| Msa0488150 | MtrunA17_Chr3g0112311 | 69.458 | 203 | 59 | 1 | 81 | 283 | 2 | 201 | 6.14e-89 | 268 |
| Msa0488150 | MtrunA17_Chr7g0252101 | 52.364 | 275 | 110 | 7 | 16 | 283 | 24 | 284 | 2.99e-78 | 243 |
| Msa0488150 | MtrunA17_Chr1g0207351 | 60.199 | 201 | 73 | 3 | 89 | 284 | 21 | 219 | 1.56e-71 | 224 |
| Msa0488150 | MtrunA17_Chr7g0243331 | 57.214 | 201 | 85 | 1 | 84 | 284 | 5 | 204 | 7.77e-71 | 222 |
| Msa0488150 | MtrunA17_Chr4g0075861 | 61.026 | 195 | 67 | 3 | 14 | 200 | 180 | 373 | 3.33e-66 | 211 |
| Msa0488150 | MtrunA17_Chr3g0093911 | 57.005 | 207 | 81 | 4 | 81 | 284 | 2 | 203 | 5.76e-66 | 209 |
| Msa0488150 | MtrunA17_Chr7g0243391 | 54.808 | 208 | 92 | 1 | 76 | 283 | 14 | 219 | 7.98e-63 | 198 |
| Msa0488150 | MtrunA17_Chr3g0122991 | 63.576 | 151 | 53 | 2 | 82 | 232 | 2 | 150 | 8.98e-59 | 189 |
| Msa0488150 | MtrunA17_Chr6g0452641 | 59.563 | 183 | 68 | 3 | 105 | 284 | 5 | 184 | 4.42e-57 | 186 |
| Msa0488150 | MtrunA17_Chr1g0196231 | 56.376 | 149 | 60 | 3 | 75 | 222 | 222 | 366 | 4.80e-45 | 155 |
| Msa0488150 | MtrunA17_Chr1g0209051 | 63.415 | 123 | 45 | 0 | 161 | 283 | 1 | 123 | 6.42e-45 | 153 |
| Msa0488150 | MtrunA17_Chr1g0206951 | 61.947 | 113 | 42 | 1 | 83 | 194 | 2 | 114 | 3.58e-42 | 141 |
| Msa0488150 | MtrunA17_Chr3g0123471 | 58.065 | 124 | 48 | 2 | 161 | 284 | 1 | 120 | 4.32e-36 | 129 |
| Msa0488150 | MtrunA17_Chr7g0238781 | 46.269 | 134 | 70 | 2 | 112 | 245 | 27 | 158 | 1.02e-29 | 110 |
| Msa0488150 | MtrunA17_Chr3g0077911 | 74.286 | 70 | 13 | 1 | 2 | 66 | 1 | 70 | 5.88e-25 | 97.8 |
| Msa0488150 | MtrunA17_Chr3g0077911 | 60.563 | 71 | 19 | 2 | 9 | 70 | 90 | 160 | 1.59e-16 | 75.1 |
| Msa0488150 | MtrunA17_Chr3g0077861 | 60.194 | 103 | 25 | 3 | 2 | 88 | 1 | 103 | 2.43e-24 | 96.3 |
| Msa0488150 | MtrunA17_Chr3g0077861 | 62.821 | 78 | 20 | 2 | 9 | 77 | 90 | 167 | 1.37e-22 | 91.7 |
| Msa0488150 | MtrunA17_Chr1g0209061 | 43.902 | 123 | 49 | 5 | 1 | 119 | 1 | 107 | 2.94e-20 | 83.6 |
| Msa0488150 | MtrunA17_Chr5g0415031 | 50.562 | 89 | 36 | 2 | 3 | 83 | 37 | 125 | 5.73e-16 | 78.2 |
| Msa0488150 | MtrunA17_Chr8g0364231 | 38.806 | 134 | 56 | 4 | 3 | 128 | 36 | 151 | 1.55e-15 | 77.0 |
| Msa0488150 | MtrunA17_Chr3g0077881 | 55.405 | 74 | 24 | 2 | 2 | 66 | 1 | 74 | 1.97e-14 | 70.1 |
| Msa0488150 | MtrunA17_Chr3g0077881 | 52.564 | 78 | 28 | 2 | 9 | 77 | 99 | 176 | 1.35e-12 | 64.7 |
| Msa0488150 | MtrunA17_Chr3g0077891 | 55.405 | 74 | 24 | 2 | 2 | 66 | 1 | 74 | 2.09e-14 | 69.7 |
| Msa0488150 | MtrunA17_Chr3g0077891 | 51.282 | 78 | 29 | 2 | 9 | 77 | 99 | 176 | 2.15e-13 | 67.0 |
| Msa0488150 | MtrunA17_Chr3g0077941 | 55.405 | 74 | 24 | 2 | 2 | 66 | 1 | 74 | 2.13e-14 | 69.7 |
| Msa0488150 | MtrunA17_Chr3g0077941 | 52.564 | 78 | 28 | 2 | 9 | 77 | 98 | 175 | 1.22e-13 | 67.8 |
| Msa0488150 | MtrunA17_Chr6g0452001 | 47.191 | 89 | 39 | 2 | 3 | 83 | 57 | 145 | 4.45e-13 | 69.3 |
| Msa0488150 | MtrunA17_Chr3g0077811 | 51.351 | 74 | 27 | 2 | 2 | 66 | 6 | 79 | 8.24e-13 | 63.9 |
| Msa0488150 | MtrunA17_Chr1g0206781 | 55.385 | 65 | 21 | 2 | 10 | 66 | 12 | 76 | 8.63e-13 | 63.9 |
| Msa0488150 | MtrunA17_Chr1g0206771 | 55.556 | 63 | 20 | 2 | 10 | 64 | 17 | 79 | 5.76e-12 | 63.2 |
| Msa0488150 | MtrunA17_Chr6g0459061 | 25.773 | 194 | 136 | 3 | 92 | 283 | 22 | 209 | 1.89e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488150 | AT1G59890.4 | 45.714 | 105 | 45 | 3 | 9 | 105 | 45 | 145 | 8.06e-16 | 78.2 |
| Msa0488150 | AT1G59890.3 | 45.714 | 105 | 45 | 3 | 9 | 105 | 45 | 145 | 8.22e-16 | 78.2 |
| Msa0488150 | AT1G59890.1 | 45.714 | 105 | 45 | 3 | 9 | 105 | 45 | 145 | 8.23e-16 | 78.2 |
| Msa0488150 | AT1G59890.2 | 45.714 | 105 | 45 | 3 | 9 | 105 | 45 | 145 | 8.23e-16 | 78.2 |
| Msa0488150 | AT1G70060.2 | 48.864 | 88 | 37 | 2 | 3 | 82 | 8 | 95 | 1.68e-15 | 77.0 |
| Msa0488150 | AT1G70060.1 | 48.864 | 88 | 37 | 2 | 3 | 82 | 8 | 95 | 1.68e-15 | 77.0 |
| Msa0488150 | AT1G24190.3 | 46.067 | 89 | 40 | 2 | 3 | 83 | 8 | 96 | 2.77e-14 | 73.6 |
| Msa0488150 | AT1G24190.2 | 46.067 | 89 | 40 | 2 | 3 | 83 | 8 | 96 | 2.84e-14 | 73.6 |
| Msa0488150 | AT1G24190.1 | 46.067 | 89 | 40 | 2 | 3 | 83 | 8 | 96 | 2.92e-14 | 73.6 |
| Msa0488150 | AT4G12020.11 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 4.85e-13 | 69.7 |
| Msa0488150 | AT4G12020.6 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.33e-13 | 69.7 |
| Msa0488150 | AT4G12020.8 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.33e-13 | 69.7 |
| Msa0488150 | AT4G12020.1 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.70e-13 | 69.7 |
| Msa0488150 | AT4G12020.9 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.70e-13 | 69.7 |
| Msa0488150 | AT4G12020.7 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.91e-13 | 69.7 |
| Msa0488150 | AT4G12020.3 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 5.94e-13 | 69.7 |
| Msa0488150 | AT4G12020.2 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 6.64e-13 | 69.3 |
| Msa0488150 | AT4G12020.5 | 43.689 | 103 | 38 | 4 | 2 | 97 | 234 | 323 | 6.74e-13 | 69.3 |
| Msa0488150 | AT4G12020.10 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 6.76e-13 | 69.3 |
| Msa0488150 | AT4G12020.4 | 43.689 | 103 | 38 | 4 | 2 | 97 | 301 | 390 | 7.28e-13 | 69.3 |
| Msa0488150 | AT1G10450.3 | 49.425 | 87 | 32 | 3 | 9 | 87 | 84 | 166 | 1.99e-12 | 67.8 |
| Msa0488150 | AT3G01320.1 | 47.674 | 86 | 37 | 2 | 3 | 80 | 51 | 136 | 2.15e-12 | 67.8 |
| Msa0488150 | AT1G10450.2 | 49.425 | 87 | 32 | 3 | 9 | 87 | 33 | 115 | 2.19e-12 | 67.8 |
| Msa0488150 | AT1G10450.1 | 49.425 | 87 | 32 | 3 | 9 | 87 | 33 | 115 | 2.19e-12 | 67.8 |
| Msa0488150 | AT3G01320.2 | 47.674 | 86 | 37 | 2 | 3 | 80 | 51 | 136 | 2.22e-12 | 67.8 |
| Msa0488150 | AT5G15020.1 | 32.836 | 134 | 62 | 4 | 3 | 128 | 46 | 159 | 6.93e-11 | 63.2 |
| Msa0488150 | AT5G15020.2 | 32.836 | 134 | 62 | 4 | 3 | 128 | 46 | 159 | 7.51e-11 | 63.2 |
Find 45 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAGAAAACTTTACTTTAA+AGG | 0.129713 | 3_4:+7411153 | None:intergenic |
| GTCTACCAATCTCGAAATTT+TGG | 0.131418 | 3_4:-7411043 | Msa0488150:CDS |
| AGGGCATACAGATTTAATTT+TGG | 0.178085 | 3_4:-7413915 | Msa0488150:CDS |
| GGGAATTTCATAAAATTTAT+TGG | 0.195974 | 3_4:-7411414 | Msa0488150:CDS |
| AAGAGTAAGGATTTGTTTAA+AGG | 0.223896 | 3_4:-7413935 | Msa0488150:CDS |
| TACCATGTCTTACTTGCTTT+TGG | 0.226717 | 3_4:-7411124 | Msa0488150:CDS |
| AATTTATTGGAGAAATTTCT+TGG | 0.271876 | 3_4:-7411401 | Msa0488150:CDS |
| CTCAGAGGAGTTTGTCTTAG+TGG | 0.311907 | 3_4:-7411095 | Msa0488150:CDS |
| GACGACCTCTTTGAATTTGC+TGG | 0.321873 | 3_4:-7411454 | Msa0488150:CDS |
| TGGATTTCCCTTTGTTGAAT+AGG | 0.333411 | 3_4:+7411012 | None:intergenic |
| CAAAGGTGATCAATCACTTT+TGG | 0.340937 | 3_4:-7411288 | Msa0488150:CDS |
| AGCAGTAAAACAAAAGATTA+TGG | 0.348530 | 3_4:-7414287 | Msa0488150:CDS |
| GTGGCTTTATGTAAAAGTTC+TGG | 0.359573 | 3_4:-7411076 | Msa0488150:CDS |
| AGAGTAAGGATTTGTTTAAA+GGG | 0.372867 | 3_4:-7413934 | Msa0488150:CDS |
| CCCAACCAAAATTTCGAGAT+TGG | 0.381987 | 3_4:+7411038 | None:intergenic |
| ACAAATTGTATTGGATTTCA+AGG | 0.384142 | 3_4:-7414245 | Msa0488150:CDS |
| AGGCTGAAAATATTGATACT+AGG | 0.410413 | 3_4:-7414225 | Msa0488150:CDS |
| AGTGTGTTTCCATATGTCTT+AGG | 0.412686 | 3_4:+7413875 | None:intergenic |
| TTTGGCACTTAGCCTATTGT+GGG | 0.419830 | 3_4:-7411270 | Msa0488150:CDS |
| TTGCTGGTGTGTGCAAGAAT+TGG | 0.427087 | 3_4:-7411438 | Msa0488150:CDS |
| ATCTTCTTGCCTAAGACATA+TGG | 0.434139 | 3_4:-7413884 | Msa0488150:CDS |
| GCCTATTGTGGGTCTTCTAG+TGG | 0.450870 | 3_4:-7411259 | Msa0488150:CDS |
| TCTATTTACAAGAAGAAAGA+TGG | 0.476603 | 3_4:-7411191 | Msa0488150:CDS |
| TACACCTATGTTGACCTTGT+CGG | 0.484152 | 3_4:+7410940 | None:intergenic |
| GGCTGAAAATATTGATACTA+GGG | 0.509868 | 3_4:-7414224 | Msa0488150:intron |
| ACAAAGTCAACAACCTTCCA+TGG | 0.521231 | 3_4:+7410992 | None:intergenic |
| TCCACTAGAAGACCCACAAT+AGG | 0.522549 | 3_4:+7411258 | None:intergenic |
| TCGGTCAGGTAAGCTGATGA+AGG | 0.528144 | 3_4:+7411324 | None:intergenic |
| TGGGCTACCTATTCAACAAA+GGG | 0.539431 | 3_4:-7411019 | Msa0488150:CDS |
| CCGAAAAGTTTATCACTCAA+AGG | 0.559386 | 3_4:-7411305 | Msa0488150:CDS |
| CTGGTGTGTGCAAGAATTGG+AGG | 0.583364 | 3_4:-7411435 | Msa0488150:CDS |
| CTTCGACCTCAGCTTGACAC+TGG | 0.589307 | 3_4:-7413854 | Msa0488150:intron |
| ATTCAACAAAGGGAAATCCA+TGG | 0.594657 | 3_4:-7411009 | Msa0488150:CDS |
| AACAAAGGGAAATCCATGGA+AGG | 0.611683 | 3_4:-7411005 | Msa0488150:CDS |
| TTGGGCTACCTATTCAACAA+AGG | 0.612964 | 3_4:-7411020 | Msa0488150:CDS |
| TAACGCTAATGCATCACCAC+GGG | 0.620032 | 3_4:+7414315 | None:intergenic |
| TATTTACGTCGTCACCGACA+AGG | 0.624444 | 3_4:-7410954 | Msa0488150:CDS |
| ATGATATCAAGCAAATCCCA+AGG | 0.642250 | 3_4:+7411496 | None:intergenic |
| TACTAACCAGTGTCAAGCTG+AGG | 0.644528 | 3_4:+7413848 | None:intergenic |
| TGCCAAAAGCAAGTAAGACA+TGG | 0.647599 | 3_4:+7411122 | None:intergenic |
| GTCACCGACAAGGTCAACAT+AGG | 0.650684 | 3_4:-7410944 | Msa0488150:CDS |
| ACACACCAGCAAATTCAAAG+AGG | 0.672639 | 3_4:+7411449 | None:intergenic |
| ATGATGAAGAAGCGCACCCG+TGG | 0.703947 | 3_4:-7414331 | Msa0488150:CDS |
| TGGTGTGTGCAAGAATTGGA+GGG | 0.716460 | 3_4:-7411434 | Msa0488150:CDS |
| GTAACGCTAATGCATCACCA+CGG | 0.738440 | 3_4:+7414314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATACAAATTGTAT+TGG | - | chr3_4:7411005-7411024 | Msa0488150:CDS | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | - | chr3_4:7412483-7412502 | Msa0488150:intron | 15.0% |
| !!! | ATTTAGCATTATTTTTGTTT+TGG | - | chr3_4:7412552-7412571 | Msa0488150:intron | 15.0% |
| !! | ATCCTAATCTTATTAATAAT+AGG | - | chr3_4:7412840-7412859 | Msa0488150:intron | 15.0% |
| !! | TTCCTATTATTAATAAGATT+AGG | + | chr3_4:7412845-7412864 | None:intergenic | 15.0% |
| !!! | TAATTTAGAGTTATTCTATT+TGG | + | chr3_4:7412869-7412888 | None:intergenic | 15.0% |
| !! | ATTACATGATAATACTAATA+AGG | + | chr3_4:7413308-7413327 | None:intergenic | 15.0% |
| !! | ATTTATTTCCACATTATTTA+CGG | + | chr3_4:7413579-7413598 | None:intergenic | 15.0% |
| !! | TTATATTATCATAGAAAACA+AGG | + | chr3_4:7413613-7413632 | None:intergenic | 15.0% |
| !! | ATCTCAAAATTAAATCTTCA+TGG | + | chr3_4:7411095-7411114 | None:intergenic | 20.0% |
| !!! | AGAGTTTTTAAAACTTATGA+AGG | - | chr3_4:7411261-7411280 | Msa0488150:CDS | 20.0% |
| !! | AGTGTACTAGTATTAATTTA+GGG | - | chr3_4:7411523-7411542 | Msa0488150:CDS | 20.0% |
| !!! | TTTCAAACTCTTAGAATTTT+AGG | + | chr3_4:7412806-7412825 | None:intergenic | 20.0% |
| !!! | GTACATAATTGTATTTTATG+TGG | - | chr3_4:7413539-7413558 | Msa0488150:intron | 20.0% |
| !! | GGGAATTTCATAAAATTTAT+TGG | - | chr3_4:7413845-7413864 | Msa0488150:intron | 20.0% |
| !! | AATTTATTGGAGAAATTTCT+TGG | - | chr3_4:7413858-7413877 | Msa0488150:CDS | 20.0% |
| !! | AGTAGAAAACTTTACTTTAA+AGG | + | chr3_4:7414109-7414128 | None:intergenic | 20.0% |
| ! | AGCAGTAAAACAAAAGATTA+TGG | - | chr3_4:7410972-7410991 | Msa0488150:CDS | 25.0% |
| ! | ACAAATTGTATTGGATTTCA+AGG | - | chr3_4:7411014-7411033 | Msa0488150:CDS | 25.0% |
| ! | ATATGAAATCAAACTTCCAT+TGG | - | chr3_4:7411136-7411155 | Msa0488150:CDS | 25.0% |
| ! | AAAACTTATGAAGGATTTCA+AGG | - | chr3_4:7411270-7411289 | Msa0488150:CDS | 25.0% |
| !! | AAGAGTAAGGATTTGTTTAA+AGG | - | chr3_4:7411324-7411343 | Msa0488150:CDS | 25.0% |
| !! | AGAGTAAGGATTTGTTTAAA+GGG | - | chr3_4:7411325-7411344 | Msa0488150:CDS | 25.0% |
| ! | ATAAGTTTATCGCAGAATAT+AGG | + | chr3_4:7411491-7411510 | None:intergenic | 25.0% |
| ! | GAGTGTACTAGTATTAATTT+AGG | - | chr3_4:7411522-7411541 | Msa0488150:CDS | 25.0% |
| ! | TAATTTAGGGACTAATTTGA+TGG | - | chr3_4:7411536-7411555 | Msa0488150:CDS | 25.0% |
| ! | TTGTTTATTGATAAGCAGAT+AGG | - | chr3_4:7411617-7411636 | Msa0488150:intron | 25.0% |
| !! | TTACAAAACCTGAAAGTTTT+AGG | + | chr3_4:7412039-7412058 | None:intergenic | 25.0% |
| !! | ATTTTGTTCAATTTTTGACC+CGG | - | chr3_4:7412244-7412263 | Msa0488150:intron | 25.0% |
| !!! | TTTTGGGTATTTATAGAACT+GGG | + | chr3_4:7412300-7412319 | None:intergenic | 25.0% |
| ! | AGTTCTATAAATACCCAAAA+GGG | - | chr3_4:7412300-7412319 | Msa0488150:intron | 25.0% |
| ! | TTTAGTAGATGAAACAATGA+TGG | + | chr3_4:7412437-7412456 | None:intergenic | 25.0% |
| ! | ACTAAAGAATATTTGCATCT+AGG | - | chr3_4:7412451-7412470 | Msa0488150:intron | 25.0% |
| ! | ATTACCAAGGTTATCAAAAT+CGG | + | chr3_4:7412728-7412747 | None:intergenic | 25.0% |
| ! | TCAAATGATTACTATTACCA+AGG | + | chr3_4:7412741-7412760 | None:intergenic | 25.0% |
| !! | AGACAATTGGATTATTGATT+AGG | + | chr3_4:7412907-7412926 | None:intergenic | 25.0% |
| ! | AACAAATGGATAATTGCAAA+AGG | - | chr3_4:7412953-7412972 | Msa0488150:intron | 25.0% |
| ! | ACAAATGGATAATTGCAAAA+GGG | - | chr3_4:7412954-7412973 | Msa0488150:intron | 25.0% |
| !!! | ATATAATTGGTTTTGGCAAA+TGG | + | chr3_4:7413085-7413104 | None:intergenic | 25.0% |
| !!! | TGGCATAATATAATTGGTTT+TGG | + | chr3_4:7413092-7413111 | None:intergenic | 25.0% |
| ! | TACACTTGGCATAATATAAT+TGG | + | chr3_4:7413098-7413117 | None:intergenic | 25.0% |
| ! | GTCATATTTGAAAATACACT+TGG | + | chr3_4:7413112-7413131 | None:intergenic | 25.0% |
| ! | GTTATTGCATAATAGTTCAA+TGG | - | chr3_4:7413171-7413190 | Msa0488150:intron | 25.0% |
| ! | AGAATGTTAATTTCCATTAG+AGG | - | chr3_4:7413384-7413403 | Msa0488150:intron | 25.0% |
| ! | AGAATGTTAATTTCCATTAG+AGG | - | chr3_4:7413384-7413403 | Msa0488150:intron | 25.0% |
| !!! | TCTATTGTTCATTTGCTATA+AGG | - | chr3_4:7413463-7413482 | Msa0488150:intron | 25.0% |
| !!! | CTATTGTTCATTTGCTATAA+GGG | - | chr3_4:7413464-7413483 | Msa0488150:intron | 25.0% |
| !!! | TATTGTTCATTTGCTATAAG+GGG | - | chr3_4:7413465-7413484 | Msa0488150:intron | 25.0% |
| ! | ACTACTGACATTAAAAAAAG+AGG | - | chr3_4:7413513-7413532 | Msa0488150:intron | 25.0% |
| ! | ACATTATTTACGGACAAAAA+TGG | + | chr3_4:7413569-7413588 | None:intergenic | 25.0% |
| !! | ATTTTTGTCCGTAAATAATG+TGG | - | chr3_4:7413568-7413587 | Msa0488150:intron | 25.0% |
| !!! | AGATGATTTTTTAGTTCCTT+GGG | - | chr3_4:7413747-7413766 | Msa0488150:intron | 25.0% |
| ! | GGAAAAAGATTTCTCATAAT+GGG | + | chr3_4:7413917-7413936 | None:intergenic | 25.0% |
| ! | AGGAAAAAGATTTCTCATAA+TGG | + | chr3_4:7413918-7413937 | None:intergenic | 25.0% |
| ! | TCTATTTACAAGAAGAAAGA+TGG | - | chr3_4:7414068-7414087 | Msa0488150:intron | 25.0% |
| AGGCTGAAAATATTGATACT+AGG | - | chr3_4:7411034-7411053 | Msa0488150:CDS | 30.0% | |
| GGCTGAAAATATTGATACTA+GGG | - | chr3_4:7411035-7411054 | Msa0488150:CDS | 30.0% | |
| AGAGTGTATGAGTTGTTTAA+AGG | - | chr3_4:7411069-7411088 | Msa0488150:CDS | 30.0% | |
| AAAGTAAAAGATACGTATCG+AGG | - | chr3_4:7411217-7411236 | Msa0488150:CDS | 30.0% | |
| !! | AGGGCATACAGATTTAATTT+TGG | - | chr3_4:7411344-7411363 | Msa0488150:CDS | 30.0% |
| !! | GGGCATACAGATTTAATTTT+GGG | - | chr3_4:7411345-7411364 | Msa0488150:CDS | 30.0% |
| GAACAAACAAGATTTGATCA+CGG | + | chr3_4:7411784-7411803 | None:intergenic | 30.0% | |
| ACTAAATTGTGAAAGCAAGA+AGG | - | chr3_4:7411949-7411968 | Msa0488150:intron | 30.0% | |
| AAGATGTTCCTAAAACTTTC+AGG | - | chr3_4:7412028-7412047 | Msa0488150:intron | 30.0% | |
| !! | ATAGGATTTTGCCTGTTTTT+GGG | + | chr3_4:7412153-7412172 | None:intergenic | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | - | chr3_4:7412221-7412240 | Msa0488150:intron | 30.0% |
| !! | CTTTTGGGTATTTATAGAAC+TGG | + | chr3_4:7412301-7412320 | None:intergenic | 30.0% |
| CAGTTCTATAAATACCCAAA+AGG | - | chr3_4:7412299-7412318 | Msa0488150:intron | 30.0% | |
| GAAGTGAAAGAATGAAACTT+TGG | + | chr3_4:7412326-7412345 | None:intergenic | 30.0% | |
| TAAAATCGCAATCAAAATCG+AGG | + | chr3_4:7412584-7412603 | None:intergenic | 30.0% | |
| TCGATATAGGATAGTAAAGT+CGG | + | chr3_4:7412613-7412632 | None:intergenic | 30.0% | |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | chr3_4:7412626-7412645 | None:intergenic | 30.0% |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | chr3_4:7412648-7412667 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr3_4:7412583-7412602 | None:intergenic | 30.0% | |
| TTACCAAGGTTATCAAAATC+GGG | + | chr3_4:7412727-7412746 | None:intergenic | 30.0% | |
| TTTGTTGCATTGTCAATTGT+GGG | + | chr3_4:7412939-7412958 | None:intergenic | 30.0% | |
| ! | ATTTGTTGCATTGTCAATTG+TGG | + | chr3_4:7412940-7412959 | None:intergenic | 30.0% |
| ACAATTGACAATGCAACAAA+TGG | - | chr3_4:7412939-7412958 | Msa0488150:intron | 30.0% | |
| ! | ATTCCAAGCTTACAGATTTT+AGG | - | chr3_4:7413043-7413062 | Msa0488150:intron | 30.0% |
| ATGGTTACAAGCTTATTTGT+AGG | - | chr3_4:7413190-7413209 | Msa0488150:intron | 30.0% | |
| !! | TTCCATTAGAGGCATTAAAA+TGG | - | chr3_4:7413395-7413414 | Msa0488150:intron | 30.0% |
| !! | AACCATTTTAATGCCTCTAA+TGG | + | chr3_4:7413400-7413419 | None:intergenic | 30.0% |
| !! | TTCCATTAGAGGCATTAAAA+TGG | - | chr3_4:7413395-7413414 | Msa0488150:intron | 30.0% |
| !! | ATCCATTTTAATGCCTCTAA+TGG | + | chr3_4:7413442-7413461 | None:intergenic | 30.0% |
| !!! | CAGATGATTTTTTAGTTCCT+TGG | - | chr3_4:7413746-7413765 | Msa0488150:intron | 30.0% |
| ! | GAAGACTTTTGAACAAGTAA+TGG | + | chr3_4:7413895-7413914 | None:intergenic | 30.0% |
| ! | CCTTTGAGTGATAAACTTTT+CGG | + | chr3_4:7413957-7413976 | None:intergenic | 30.0% |
| TTTCATATTCAGTTGCACGA+AGG | + | chr3_4:7411124-7411143 | None:intergenic | 35.0% | |
| TCGTCATTATCATGATCCAA+TGG | + | chr3_4:7411155-7411174 | None:intergenic | 35.0% | |
| GCTTGTAGAATTGATACAAG+TGG | - | chr3_4:7411292-7411311 | Msa0488150:CDS | 35.0% | |
| ! | AATTGATACAAGTGGTGTTG+CGG | - | chr3_4:7411300-7411319 | Msa0488150:CDS | 35.0% |
| ATCTTCTTGCCTAAGACATA+TGG | - | chr3_4:7411375-7411394 | Msa0488150:CDS | 35.0% | |
| AGTGTGTTTCCATATGTCTT+AGG | + | chr3_4:7411387-7411406 | None:intergenic | 35.0% | |
| GTCAGAGACTAAGGAATAAT+TGG | - | chr3_4:7411752-7411771 | Msa0488150:intron | 35.0% | |
| ! | GATAGGATTTTGCCTGTTTT+TGG | + | chr3_4:7412154-7412173 | None:intergenic | 35.0% |
| !! | CGATTTTGTGCGATTTTGAT+AGG | + | chr3_4:7412171-7412190 | None:intergenic | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+CGG | + | chr3_4:7412210-7412229 | None:intergenic | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | - | chr3_4:7412211-7412230 | Msa0488150:intron | 35.0% |
| AATCGGGTCAATTTATGAAC+CGG | + | chr3_4:7412266-7412285 | None:intergenic | 35.0% | |
| GTATTTATAGAACTGGGTCA+TGG | + | chr3_4:7412294-7412313 | None:intergenic | 35.0% | |
| ! | AATGAAACTTTGGCCCTTTT+GGG | + | chr3_4:7412316-7412335 | None:intergenic | 35.0% |
| ! | TGTAACTATTGAGGAAGTGT+GGG | + | chr3_4:7412350-7412369 | None:intergenic | 35.0% |
| ACACTTCCTCAATAGTTACA+CGG | - | chr3_4:7412350-7412369 | Msa0488150:intron | 35.0% | |
| !! | ATGAAACAATGATGGATGGA+AGG | + | chr3_4:7412429-7412448 | None:intergenic | 35.0% |
| ! | GTAGATGAAACAATGATGGA+TGG | + | chr3_4:7412433-7412452 | None:intergenic | 35.0% |
| CGATATAGGATAGTAAAGTC+GGG | + | chr3_4:7412612-7412631 | None:intergenic | 35.0% | |
| GACTTTACTTCAAGTCGAAA+GGG | + | chr3_4:7412705-7412724 | None:intergenic | 35.0% | |
| TATCCCAAATCATAACGCTA+AGG | - | chr3_4:7412767-7412786 | Msa0488150:intron | 35.0% | |
| ATCCCAAATCATAACGCTAA+GGG | - | chr3_4:7412768-7412787 | Msa0488150:intron | 35.0% | |
| GATAATTGCAAAAGGGAAAG+AGG | - | chr3_4:7412961-7412980 | Msa0488150:intron | 35.0% | |
| AGCTTGGAATGTGCATAAAT+AGG | + | chr3_4:7413033-7413052 | None:intergenic | 35.0% | |
| GATCCTAAAATCTGTAAGCT+TGG | + | chr3_4:7413049-7413068 | None:intergenic | 35.0% | |
| ATAAGCTAAGCTATGTTGCT+TGG | - | chr3_4:7413270-7413289 | Msa0488150:intron | 35.0% | |
| TTATGTTGCTGTCTCATATC+AGG | - | chr3_4:7413345-7413364 | Msa0488150:intron | 35.0% | |
| TTGTCATTGTTGTGATACGT+AGG | - | chr3_4:7413703-7413722 | Msa0488150:intron | 35.0% | |
| TGTCATTGTTGTGATACGTA+GGG | - | chr3_4:7413704-7413723 | Msa0488150:intron | 35.0% | |
| ! | ATCTGCTACCTTCTTCTTTT+TGG | + | chr3_4:7413731-7413750 | None:intergenic | 35.0% |
| ATGATATCAAGCAAATCCCA+AGG | + | chr3_4:7413766-7413785 | None:intergenic | 35.0% | |
| CCGAAAAGTTTATCACTCAA+AGG | - | chr3_4:7413954-7413973 | Msa0488150:intron | 35.0% | |
| ! | CAAAGGTGATCAATCACTTT+TGG | - | chr3_4:7413971-7413990 | Msa0488150:intron | 35.0% |
| ! | TACCATGTCTTACTTGCTTT+TGG | - | chr3_4:7414135-7414154 | Msa0488150:intron | 35.0% |
| !! | GTGGCTTTATGTAAAAGTTC+TGG | - | chr3_4:7414183-7414202 | Msa0488150:intron | 35.0% |
| ! | GTCTACCAATCTCGAAATTT+TGG | - | chr3_4:7414216-7414235 | Msa0488150:intron | 35.0% |
| !! | ACCAATCTCGAAATTTTGGT+TGG | - | chr3_4:7414220-7414239 | Msa0488150:intron | 35.0% |
| !!! | CCAATCTCGAAATTTTGGTT+GGG | - | chr3_4:7414221-7414240 | Msa0488150:intron | 35.0% |
| TGGATTTCCCTTTGTTGAAT+AGG | + | chr3_4:7414250-7414269 | None:intergenic | 35.0% | |
| ATTCAACAAAGGGAAATCCA+TGG | - | chr3_4:7414250-7414269 | Msa0488150:CDS | 35.0% | |
| ATAAGCAGATAGGTCACTCA+AGG | - | chr3_4:7411627-7411646 | Msa0488150:intron | 40.0% | |
| TAGGTCACTCAAGGTTTACA+CGG | - | chr3_4:7411636-7411655 | Msa0488150:intron | 40.0% | |
| ! | GTCGCAAAAACCAGGATTTT+GGG | + | chr3_4:7412093-7412112 | None:intergenic | 40.0% |
| ! | AGTCGCAAAAACCAGGATTT+TGG | + | chr3_4:7412094-7412113 | None:intergenic | 40.0% |
| TACGTAAAGTCGCAAAAACC+AGG | + | chr3_4:7412101-7412120 | None:intergenic | 40.0% | |
| !!! | CTGTTTTTGGGACTTTGCTA+TGG | + | chr3_4:7412141-7412160 | None:intergenic | 40.0% |
| CATAGCAAAGTCCCAAAAAC+AGG | - | chr3_4:7412139-7412158 | Msa0488150:intron | 40.0% | |
| TGAAATCCGTTCAAAATCGC+AGG | - | chr3_4:7412201-7412220 | Msa0488150:intron | 40.0% | |
| ATCGGGTCAATTTATGAACC+GGG | + | chr3_4:7412265-7412284 | None:intergenic | 40.0% | |
| ACTGGGTCATGGATTCAAAT+CGG | + | chr3_4:7412283-7412302 | None:intergenic | 40.0% | |
| ! | GAATGAAACTTTGGCCCTTT+TGG | + | chr3_4:7412317-7412336 | None:intergenic | 40.0% |
| ! | TAACTATTGAGGAAGTGTGG+GGG | + | chr3_4:7412348-7412367 | None:intergenic | 40.0% |
| ! | GTAACTATTGAGGAAGTGTG+GGG | + | chr3_4:7412349-7412368 | None:intergenic | 40.0% |
| GTGTAACTATTGAGGAAGTG+TGG | + | chr3_4:7412351-7412370 | None:intergenic | 40.0% | |
| CACTTCCTCAATAGTTACAC+GGG | - | chr3_4:7412351-7412370 | Msa0488150:intron | 40.0% | |
| ACAATCCCGTGTAACTATTG+AGG | + | chr3_4:7412359-7412378 | None:intergenic | 40.0% | |
| !! | AAACAATGATGGATGGAAGG+AGG | + | chr3_4:7412426-7412445 | None:intergenic | 40.0% |
| ! | TCGAAAGGGACTAGCAAAAT+CGG | + | chr3_4:7412691-7412710 | None:intergenic | 40.0% |
| GGACTTTACTTCAAGTCGAA+AGG | + | chr3_4:7412706-7412725 | None:intergenic | 40.0% | |
| !! | AGTCCCGATTTTGATAACCT+TGG | - | chr3_4:7412721-7412740 | Msa0488150:intron | 40.0% |
| TCCCAAATCATAACGCTAAG+GGG | - | chr3_4:7412769-7412788 | Msa0488150:intron | 40.0% | |
| ACCCCTTAGCGTTATGATTT+GGG | + | chr3_4:7412773-7412792 | None:intergenic | 40.0% | |
| CATGCACAATAGCTTACAGT+GGG | - | chr3_4:7413221-7413240 | Msa0488150:intron | 40.0% | |
| ! | AAGGGGCATGATCACTTAAA+TGG | - | chr3_4:7413482-7413501 | Msa0488150:intron | 40.0% |
| ACACACCAGCAAATTCAAAG+AGG | + | chr3_4:7413813-7413832 | None:intergenic | 40.0% | |
| ! | GAGTGATAAACTTTTCGGTC+AGG | + | chr3_4:7413952-7413971 | None:intergenic | 40.0% |
| ! | TTTTGGCACTTAGCCTATTG+TGG | - | chr3_4:7413988-7414007 | Msa0488150:intron | 40.0% |
| TTTGGCACTTAGCCTATTGT+GGG | - | chr3_4:7413989-7414008 | Msa0488150:intron | 40.0% | |
| TGCCAAAAGCAAGTAAGACA+TGG | + | chr3_4:7414140-7414159 | None:intergenic | 40.0% | |
| !! | GTCTTACTTGCTTTTGGCAA+AGG | - | chr3_4:7414141-7414160 | Msa0488150:intron | 40.0% |
| CCCAACCAAAATTTCGAGAT+TGG | + | chr3_4:7414224-7414243 | None:intergenic | 40.0% | |
| TTGGGCTACCTATTCAACAA+AGG | - | chr3_4:7414239-7414258 | Msa0488150:CDS | 40.0% | |
| TGGGCTACCTATTCAACAAA+GGG | - | chr3_4:7414240-7414259 | Msa0488150:CDS | 40.0% | |
| AACAAAGGGAAATCCATGGA+AGG | - | chr3_4:7414254-7414273 | Msa0488150:CDS | 40.0% | |
| ACAAAGTCAACAACCTTCCA+TGG | + | chr3_4:7414270-7414289 | None:intergenic | 40.0% | |
| TACACCTATGTTGACCTTGT+CGG | + | chr3_4:7414322-7414341 | None:intergenic | 40.0% | |
| TAACGCTAATGCATCACCAC+GGG | + | chr3_4:7410947-7410966 | None:intergenic | 45.0% | |
| GTAACGCTAATGCATCACCA+CGG | + | chr3_4:7410948-7410967 | None:intergenic | 45.0% | |
| TACTAACCAGTGTCAAGCTG+AGG | + | chr3_4:7411414-7411433 | None:intergenic | 45.0% | |
| TTGCGACATTTCGCATTTGC+TGG | - | chr3_4:7411584-7411603 | Msa0488150:intron | 45.0% | |
| TGCGACATTTCGCATTTGCT+GGG | - | chr3_4:7411585-7411604 | Msa0488150:intron | 45.0% | |
| ! | CATTTCGCATTTGCTGGGTT+TGG | - | chr3_4:7411590-7411609 | Msa0488150:intron | 45.0% |
| AGGTCACTCAAGGTTTACAC+GGG | - | chr3_4:7411637-7411656 | Msa0488150:intron | 45.0% | |
| CACTATGCAGTCAGAGACTA+AGG | - | chr3_4:7411743-7411762 | Msa0488150:intron | 45.0% | |
| CGACTTAAGTCCCAAAATCC+TGG | - | chr3_4:7412080-7412099 | Msa0488150:intron | 45.0% | |
| CTGGGTCATGGATTCAAATC+GGG | + | chr3_4:7412282-7412301 | None:intergenic | 45.0% | |
| TGGAAGGAGGCAATCTAGTT+AGG | + | chr3_4:7412413-7412432 | None:intergenic | 45.0% | |
| ! | CGAAAGGGACTAGCAAAATC+GGG | + | chr3_4:7412690-7412709 | None:intergenic | 45.0% |
| CACCCCTTAGCGTTATGATT+TGG | + | chr3_4:7412774-7412793 | None:intergenic | 45.0% | |
| TGGGAACTCTGACAGACAAT+TGG | + | chr3_4:7412920-7412939 | None:intergenic | 45.0% | |
| !! | GGTTTTGGCAAATGGACATG+CGG | + | chr3_4:7413077-7413096 | None:intergenic | 45.0% |
| GCATGCACAATAGCTTACAG+TGG | - | chr3_4:7413220-7413239 | Msa0488150:intron | 45.0% | |
| CGTAGGGTCCAAAAAGAAGA+AGG | - | chr3_4:7413720-7413739 | Msa0488150:intron | 45.0% | |
| GACGACCTCTTTGAATTTGC+TGG | - | chr3_4:7413805-7413824 | Msa0488150:intron | 45.0% | |
| TTGCTGGTGTGTGCAAGAAT+TGG | - | chr3_4:7413821-7413840 | Msa0488150:intron | 45.0% | |
| TGGTGTGTGCAAGAATTGGA+GGG | - | chr3_4:7413825-7413844 | Msa0488150:intron | 45.0% | |
| TCCACTAGAAGACCCACAAT+AGG | + | chr3_4:7414004-7414023 | None:intergenic | 45.0% | |
| CTCAGAGGAGTTTGTCTTAG+TGG | - | chr3_4:7414164-7414183 | Msa0488150:intron | 45.0% | |
| TATTTACGTCGTCACCGACA+AGG | - | chr3_4:7414305-7414324 | Msa0488150:CDS | 45.0% | |
| !! | GTGGTGTTGCGGAAAGAGTA+AGG | - | chr3_4:7411311-7411330 | Msa0488150:CDS | 50.0% |
| ACACGGGTACTCTAGTAAGC+TGG | - | chr3_4:7411653-7411672 | Msa0488150:intron | 50.0% | |
| CTGGTGTGTGCAAGAATTGG+AGG | - | chr3_4:7413824-7413843 | Msa0488150:intron | 50.0% | |
| TCGGTCAGGTAAGCTGATGA+AGG | + | chr3_4:7413938-7413957 | None:intergenic | 50.0% | |
| GCCTATTGTGGGTCTTCTAG+TGG | - | chr3_4:7414000-7414019 | Msa0488150:intron | 50.0% | |
| ! | TGCTTTTGGCAAAGGCTCAG+AGG | - | chr3_4:7414149-7414168 | Msa0488150:intron | 50.0% |
| GTCACCGACAAGGTCAACAT+AGG | - | chr3_4:7414315-7414334 | Msa0488150:CDS | 50.0% | |
| ! | ATGATGAAGAAGCGCACCCG+TGG | - | chr3_4:7410928-7410947 | Msa0488150:CDS | 55.0% |
| CTTCGACCTCAGCTTGACAC+TGG | - | chr3_4:7411405-7411424 | Msa0488150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 7410928 | 7414353 | 7410928 | ID=Msa0488150;Name=Msa0488150 |
| chr3_4 | mRNA | 7410928 | 7414353 | 7410928 | ID=Msa0488150-mRNA-1;Parent=Msa0488150;Name=Msa0488150-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|285 |
| chr3_4 | exon | 7414225 | 7414353 | 7414225 | ID=Msa0488150-mRNA-1:exon:2624;Parent=Msa0488150-mRNA-1 |
| chr3_4 | exon | 7413855 | 7413954 | 7413855 | ID=Msa0488150-mRNA-1:exon:2623;Parent=Msa0488150-mRNA-1 |
| chr3_4 | exon | 7410928 | 7411556 | 7410928 | ID=Msa0488150-mRNA-1:exon:2622;Parent=Msa0488150-mRNA-1 |
| chr3_4 | CDS | 7414225 | 7414353 | 7414225 | ID=Msa0488150-mRNA-1:cds;Parent=Msa0488150-mRNA-1 |
| chr3_4 | CDS | 7413855 | 7413954 | 7413855 | ID=Msa0488150-mRNA-1:cds;Parent=Msa0488150-mRNA-1 |
| chr3_4 | CDS | 7410928 | 7411556 | 7410928 | ID=Msa0488150-mRNA-1:cds;Parent=Msa0488150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
