AlfalfaGEDB | Msa0488190

M. sativa cultivar zhongmu-4 / Msa0488190

KEGG: K20791
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904
PFAM: PF00583.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488190	GAU38899.1	58.273	139	46	3	4	130	2	140	8.93e-42	147

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488190	sp\|Q9FKI4\|NAA10_ARATH	51.079	139	56	3	4	130	2	140	3.01e-38	130

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488190	A0A2Z6P5E3	58.273	139	46	3	4	130	2	140	4.27e-42	147

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0488190	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488190	MtrunA17_Chr3g0090311	57.554	139	47	3	4	130	2	140	6.33e-45	144

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488190	AT5G13780.1	51.079	139	56	3	4	130	2	140	3.06e-39	130

Showing 1 to 1 of 1 entries

Previous1Next

Find 31 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTTCCATGTCGTTT+TGG	0.275526	3_4:-7472556	None:intergenic
AATTTGTTCAAAGAGACATT+GGG	0.527731	3_4:+7472851	Msa0488190:CDS
ACATCTTAGAGAGGTCGCAA+AGG	0.660670	3_4:-7472334	None:intergenic
ACATTGGGATACAAGATTCA+TGG	0.416619	3_4:+7472866	Msa0488190:CDS
AGAGTTTGTACATCTTAGAG+AGG	0.637261	3_4:-7472343	None:intergenic
AGCGATACCACGTCTCTGAT+GGG	0.588160	3_4:-7472513	None:intergenic
AGCTTGTTGCCCTCTTCTCA+CGG	0.516174	3_4:+7472375	Msa0488190:CDS
ATACAAGATTCATGGATTGG+AGG	0.623983	3_4:+7472874	Msa0488190:CDS
ATACCACGTCTCTGATGGGT+TGG	0.540598	3_4:-7472509	None:intergenic
ATGGGTTGGGAGAACGGCGA+GGG	0.570608	3_4:-7472495	None:intergenic

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAAGAGGAAATTAGTGA+AGG	+	chr3_4:7472461-7472480	Msa0488190:CDS	30.0%
TATTAATTCAAATTGCACCG+AGG	+	chr3_4:7472628-7472647	Msa0488190:intron	30.0%
ATTAATTCAAATTGCACCGA+GGG	+	chr3_4:7472629-7472648	Msa0488190:intron	30.0%
TTTGTGTGTCTTCTTGTAAT+AGG	+	chr3_4:7472724-7472743	Msa0488190:intron	30.0%
TTGTGTGTCTTCTTGTAATA+GGG	+	chr3_4:7472725-7472744	Msa0488190:intron	30.0%
TGAACAAATTAAAAGCTGCA+TGG	-	chr3_4:7472841-7472860	None:intergenic	30.0%
AGAGTTTGTACATCTTAGAG+AGG	-	chr3_4:7472346-7472365	None:intergenic	35.0%
CACGTCGTTGAAGATATTAA+TGG	+	chr3_4:7472410-7472429	Msa0488190:CDS	35.0%
TTTCCTCTTGAATTTCACAG+TGG	-	chr3_4:7472454-7472473	None:intergenic	35.0%
ACATTGGGATACAAGATTCA+TGG	+	chr3_4:7472866-7472885	Msa0488190:CDS	35.0%

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	7472305	7472931	7472305	ID=Msa0488190;Name=Msa0488190
chr3_4	mRNA	7472305	7472931	7472305	ID=Msa0488190-mRNA-1;Parent=Msa0488190;Name=Msa0488190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|135
chr3_4	exon	7472305	7472574	7472305	ID=Msa0488190-mRNA-1:exon:2584;Parent=Msa0488190-mRNA-1
chr3_4	exon	7472794	7472931	7472794	ID=Msa0488190-mRNA-1:exon:2585;Parent=Msa0488190-mRNA-1
chr3_4	CDS	7472305	7472574	7472305	ID=Msa0488190-mRNA-1:cds;Parent=Msa0488190-mRNA-1
chr3_4	CDS	7472794	7472931	7472794	ID=Msa0488190-mRNA-1:cds;Parent=Msa0488190-mRNA-1

Gene Sequence

>Msa0488190

ATGTCTCAAGTGTGCATAAGAGAAGCAAACCTTTGCGACCTCTCTAAGATGTACAAACTCTTTGGTCTAAAGCTTGTTGCCCTCTTCTCACGGCCTCAACTCATTCACGTCGTTGAAGATATTAATGGTCACATCGTCGCCTACGTCCACTGTGAAATTCAAGAGGAAATTAGTGAAGGAGCTATTCATTCCCTCGCCGTTCTCCCAACCCATCAGAGACGTGGTATCGCTACTAAGCTTGTGATTGCCTCCCAAAACGACATGGAACAGATGTTTGGTTCTGAGTACGTCTCAGTGCATGTCAGAAAGAGCAACCATGCAGCTTTTAATTTGTTCAAAGAGACATTGGGATACAAGATTCATGGATTGGAGGCAAAGTTTTATGCTGATGATCATGGGCGGATCTAG

Protein sequence

>Msa0488190

MSQVCIREANLCDLSKMYKLFGLKLVALFSRPQLIHVVEDINGHIVAYVHCEIQEEISEGAIHSLAVLPTHQRRGIATKLVIASQNDMEQMFGSEYVSVHVRKSNHAAFNLFKETLGYKIHGLEAKFYADDHGRI*