Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489770 | XP_039685680.1 | 90.750 | 800 | 68 | 2 | 1 | 794 | 1 | 800 | 0.0 | 1511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489770 | sp|Q9SZL8|FRS5_ARATH | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 7.46e-68 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489770 | D3YBB9 | 79.012 | 810 | 143 | 5 | 14 | 812 | 54 | 847 | 0.0 | 1323 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0489770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489770 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 632 | 812 | 1 | 184 | 4.95e-103 | 316 |
| Msa0489770 | MtrunA17_Chr2g0324011 | 30.806 | 633 | 364 | 12 | 52 | 679 | 8 | 571 | 8.20e-101 | 324 |
| Msa0489770 | MtrunA17_Chr3g0082121 | 33.610 | 482 | 287 | 8 | 57 | 536 | 49 | 499 | 4.28e-86 | 288 |
| Msa0489770 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 2.06e-12 | 70.9 |
| Msa0489770 | MtrunA17_Chr1g0202341 | 29.403 | 636 | 364 | 16 | 50 | 676 | 50 | 609 | 1.35e-81 | 276 |
| Msa0489770 | MtrunA17_Chr8g0363841 | 28.708 | 627 | 376 | 14 | 56 | 679 | 22 | 580 | 4.01e-77 | 263 |
| Msa0489770 | MtrunA17_Chr1g0203721 | 26.172 | 768 | 464 | 19 | 13 | 757 | 18 | 705 | 1.30e-76 | 266 |
| Msa0489770 | MtrunA17_Chr5g0448761 | 25.967 | 724 | 459 | 17 | 40 | 755 | 47 | 701 | 3.19e-71 | 249 |
| Msa0489770 | MtrunA17_Chr2g0296781 | 26.883 | 677 | 411 | 17 | 55 | 722 | 1 | 602 | 1.26e-70 | 246 |
| Msa0489770 | MtrunA17_Chr6g0458391 | 27.345 | 629 | 354 | 15 | 57 | 676 | 231 | 765 | 1.54e-66 | 236 |
| Msa0489770 | MtrunA17_Chr6g0477261 | 27.684 | 531 | 334 | 11 | 196 | 722 | 7 | 491 | 1.48e-64 | 228 |
| Msa0489770 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 1.14e-62 | 214 |
| Msa0489770 | MtrunA17_Chr5g0441581 | 26.113 | 674 | 400 | 18 | 39 | 703 | 25 | 609 | 3.96e-62 | 222 |
| Msa0489770 | MtrunA17_Chr2g0287651 | 25.265 | 661 | 416 | 12 | 21 | 676 | 45 | 632 | 1.12e-59 | 218 |
| Msa0489770 | MtrunA17_Chr1g0207551 | 25.243 | 721 | 441 | 19 | 22 | 732 | 9 | 641 | 2.81e-57 | 210 |
| Msa0489770 | MtrunA17_Chr2g0329031 | 25.247 | 709 | 428 | 19 | 39 | 737 | 2 | 618 | 4.07e-57 | 209 |
| Msa0489770 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 8.61e-57 | 204 |
| Msa0489770 | MtrunA17_Chr5g0440451 | 24.306 | 757 | 460 | 19 | 1 | 737 | 1 | 664 | 2.65e-55 | 206 |
| Msa0489770 | MtrunA17_Chr1g0198761 | 27.488 | 633 | 371 | 18 | 56 | 674 | 52 | 610 | 2.13e-54 | 201 |
| Msa0489770 | MtrunA17_Chr1g0196541 | 24.640 | 625 | 399 | 13 | 55 | 676 | 1 | 556 | 3.39e-54 | 200 |
| Msa0489770 | MtrunA17_Chr7g0258861 | 35.256 | 312 | 178 | 6 | 46 | 352 | 2 | 294 | 5.71e-54 | 189 |
| Msa0489770 | MtrunA17_Chr3g0080351 | 25.447 | 727 | 438 | 19 | 15 | 732 | 44 | 675 | 1.51e-53 | 200 |
| Msa0489770 | MtrunA17_Chr3g0118611 | 27.600 | 500 | 306 | 10 | 237 | 733 | 111 | 557 | 6.71e-53 | 197 |
| Msa0489770 | MtrunA17_Chr1g0203051 | 23.769 | 589 | 380 | 10 | 66 | 651 | 94 | 616 | 1.73e-51 | 191 |
| Msa0489770 | MtrunA17_Chr2g0276841 | 26.133 | 662 | 392 | 21 | 65 | 712 | 84 | 662 | 6.91e-49 | 184 |
| Msa0489770 | MtrunA17_Chr2g0287061 | 24.682 | 628 | 356 | 16 | 57 | 679 | 189 | 704 | 2.07e-48 | 184 |
| Msa0489770 | MtrunA17_Chr2g0290391 | 26.060 | 637 | 374 | 19 | 55 | 674 | 55 | 611 | 5.35e-47 | 179 |
| Msa0489770 | MtrunA17_Chr2g0291591 | 26.782 | 519 | 317 | 16 | 14 | 515 | 29 | 501 | 5.25e-44 | 167 |
| Msa0489770 | MtrunA17_Chr2g0291581 | 24.480 | 625 | 393 | 14 | 54 | 676 | 74 | 621 | 8.13e-43 | 166 |
| Msa0489770 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 9.92e-43 | 149 |
| Msa0489770 | MtrunA17_Chr5g0448511 | 25.111 | 450 | 285 | 8 | 232 | 679 | 1 | 400 | 1.69e-42 | 163 |
| Msa0489770 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 56 | 489 | 66 | 488 | 8.98e-42 | 160 |
| Msa0489770 | MtrunA17_Chr2g0294841 | 25.827 | 635 | 369 | 22 | 57 | 671 | 51 | 603 | 2.28e-37 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489770 | AT4G38180.1 | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 7.58e-69 | 243 |
| Msa0489770 | AT4G15090.1 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 9.53e-61 | 221 |
| Msa0489770 | AT4G15090.5 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 9.53e-61 | 221 |
| Msa0489770 | AT4G15090.3 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 9.53e-61 | 221 |
| Msa0489770 | AT4G15090.2 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 9.53e-61 | 221 |
| Msa0489770 | AT4G15090.4 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 9.53e-61 | 221 |
| Msa0489770 | AT3G06250.2 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.80e-52 | 196 |
| Msa0489770 | AT3G06250.1 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.80e-52 | 196 |
| Msa0489770 | AT3G06250.3 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.80e-52 | 196 |
| Msa0489770 | AT3G22170.2 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 6.20e-51 | 192 |
| Msa0489770 | AT3G22170.1 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 6.20e-51 | 192 |
| Msa0489770 | AT1G76320.3 | 24.929 | 706 | 431 | 20 | 57 | 756 | 3 | 615 | 1.42e-50 | 189 |
| Msa0489770 | AT2G27110.3 | 24.747 | 594 | 388 | 13 | 229 | 817 | 36 | 575 | 2.52e-50 | 189 |
| Msa0489770 | AT1G76320.2 | 24.597 | 683 | 425 | 17 | 55 | 733 | 1 | 597 | 3.14e-50 | 189 |
| Msa0489770 | AT1G76320.1 | 24.597 | 683 | 425 | 17 | 55 | 733 | 1 | 597 | 3.27e-50 | 189 |
| Msa0489770 | AT1G76320.4 | 24.597 | 683 | 425 | 17 | 55 | 733 | 1 | 597 | 3.27e-50 | 189 |
| Msa0489770 | AT2G27110.2 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 6.20e-50 | 189 |
| Msa0489770 | AT2G27110.1 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 6.20e-50 | 189 |
| Msa0489770 | AT5G18960.2 | 23.688 | 705 | 412 | 20 | 37 | 733 | 197 | 783 | 4.35e-47 | 180 |
| Msa0489770 | AT5G18960.1 | 23.688 | 705 | 412 | 20 | 37 | 733 | 197 | 783 | 4.35e-47 | 180 |
| Msa0489770 | AT1G10240.2 | 25.040 | 623 | 373 | 21 | 65 | 673 | 62 | 604 | 1.38e-44 | 172 |
| Msa0489770 | AT1G10240.1 | 25.040 | 623 | 373 | 21 | 65 | 673 | 62 | 604 | 1.38e-44 | 172 |
| Msa0489770 | AT4G38170.1 | 23.896 | 498 | 300 | 14 | 251 | 734 | 24 | 456 | 2.17e-43 | 166 |
| Msa0489770 | AT5G28530.1 | 24.647 | 637 | 385 | 18 | 56 | 674 | 60 | 619 | 1.79e-41 | 162 |
| Msa0489770 | AT1G80010.1 | 24.961 | 637 | 385 | 22 | 57 | 676 | 101 | 661 | 2.28e-41 | 162 |
| Msa0489770 | AT2G32250.5 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.37e-41 | 161 |
| Msa0489770 | AT2G32250.2 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 8.34e-41 | 161 |
| Msa0489770 | AT2G32250.4 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 8.34e-41 | 161 |
| Msa0489770 | AT2G32250.6 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 8.81e-41 | 161 |
| Msa0489770 | AT2G32250.1 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 8.81e-41 | 161 |
| Msa0489770 | AT2G32250.3 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 8.81e-41 | 161 |
| Msa0489770 | AT5G28530.3 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.40e-40 | 159 |
| Msa0489770 | AT5G28530.2 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.40e-40 | 159 |
| Msa0489770 | AT2G32250.8 | 23.578 | 721 | 419 | 21 | 57 | 769 | 3 | 599 | 2.31e-40 | 160 |
| Msa0489770 | AT2G32250.7 | 23.578 | 721 | 419 | 21 | 57 | 769 | 3 | 599 | 2.55e-40 | 159 |
| Msa0489770 | AT1G52520.1 | 23.077 | 624 | 400 | 17 | 57 | 676 | 91 | 638 | 4.33e-36 | 146 |
| Msa0489770 | AT4G19990.5 | 24.439 | 446 | 288 | 9 | 57 | 499 | 27 | 426 | 2.02e-31 | 132 |
| Msa0489770 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.17e-11 | 67.4 |
| Msa0489770 | AT4G19990.3 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.02e-31 | 132 |
| Msa0489770 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.36e-11 | 67.0 |
| Msa0489770 | AT4G19990.4 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.02e-31 | 132 |
| Msa0489770 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.36e-11 | 67.0 |
| Msa0489770 | AT4G19990.7 | 24.439 | 446 | 288 | 9 | 57 | 499 | 41 | 440 | 2.33e-31 | 132 |
| Msa0489770 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 607 | 703 | 511 | 597 | 4.37e-11 | 67.0 |
| Msa0489770 | AT4G19990.6 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.88e-31 | 131 |
| Msa0489770 | AT4G19990.6 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.47e-11 | 67.0 |
| Msa0489770 | AT4G19990.2 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.88e-31 | 131 |
| Msa0489770 | AT4G19990.2 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.47e-11 | 67.0 |
| Msa0489770 | AT4G19990.1 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 7.35e-30 | 127 |
| Msa0489770 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 607 | 703 | 440 | 526 | 4.16e-11 | 67.0 |
| Msa0489770 | AT5G28530.4 | 22.488 | 627 | 348 | 21 | 56 | 674 | 60 | 556 | 8.11e-23 | 104 |
| Msa0489770 | AT5G28530.5 | 22.329 | 627 | 345 | 22 | 56 | 674 | 60 | 552 | 4.50e-22 | 102 |
Find 117 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3_4:+10479134 | Msa0489770:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 3_4:-10479954 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 3_4:+10478544 | Msa0489770:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_4:+10479092 | Msa0489770:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 3_4:-10478671 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 3_4:-10479948 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 3_4:-10477465 | None:intergenic |
| ATGTATTGATGATTATATTT+TGG | 0.303619 | 3_4:+10480192 | Msa0489770:three_prime_UTR |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 3_4:-10479432 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_4:-10477656 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 3_4:+10479383 | Msa0489770:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_4:+10477972 | Msa0489770:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 3_4:+10479552 | Msa0489770:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 3_4:-10478948 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3_4:-10478022 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 3_4:-10478557 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 3_4:+10479792 | Msa0489770:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 3_4:-10480016 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_4:+10478029 | Msa0489770:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3_4:+10478021 | Msa0489770:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_4:+10477731 | Msa0489770:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_4:-10479930 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_4:+10479266 | Msa0489770:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 3_4:+10478917 | Msa0489770:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3_4:+10479508 | Msa0489770:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 3_4:+10477737 | Msa0489770:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 3_4:+10477744 | Msa0489770:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 3_4:+10477417 | Msa0489770:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 3_4:-10478730 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 3_4:+10479891 | Msa0489770:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_4:+10477669 | Msa0489770:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 3_4:-10479700 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 3_4:+10479825 | Msa0489770:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 3_4:-10477254 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 3_4:-10477255 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 3_4:-10479922 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_4:+10477534 | Msa0489770:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 3_4:+10478966 | Msa0489770:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3_4:+10477586 | Msa0489770:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 3_4:+10477129 | Msa0489770:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 3_4:+10479232 | Msa0489770:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_4:+10477699 | Msa0489770:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 3_4:-10479186 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 3_4:-10477477 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_4:+10477732 | Msa0489770:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 3_4:+10477454 | Msa0489770:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 3_4:-10479609 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 3_4:+10480006 | Msa0489770:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 3_4:+10479445 | Msa0489770:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 3_4:+10478965 | Msa0489770:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_4:-10477783 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_4:-10479268 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 3_4:+10479837 | Msa0489770:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 3_4:-10479431 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 3_4:+10479591 | Msa0489770:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_4:+10479282 | Msa0489770:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 3_4:-10479676 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 3_4:-10479860 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 3_4:+10479892 | Msa0489770:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_4:+10479106 | Msa0489770:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 3_4:+10477253 | Msa0489770:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 3_4:-10479228 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 3_4:-10479921 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_4:-10477528 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 3_4:+10477551 | Msa0489770:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_4:+10479125 | Msa0489770:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 3_4:+10477383 | Msa0489770:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 3_4:-10477639 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 3_4:-10479227 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 3_4:-10477214 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_4:+10477321 | Msa0489770:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3_4:+10477428 | Msa0489770:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 3_4:+10477593 | Msa0489770:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_4:-10479263 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 3_4:+10478756 | Msa0489770:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 3_4:-10477627 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 3_4:-10477253 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 3_4:-10477215 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_4:+10479283 | Msa0489770:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 3_4:-10479069 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3_4:+10477429 | Msa0489770:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 3_4:+10477747 | Msa0489770:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 3_4:-10478702 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 3_4:+10479555 | Msa0489770:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3_4:+10479509 | Msa0489770:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 3_4:+10478920 | Msa0489770:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 3_4:+10479876 | Msa0489770:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 3_4:-10479187 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 3_4:+10480049 | Msa0489770:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 3_4:-10479861 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 3_4:-10479430 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 3_4:+10479666 | Msa0489770:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 3_4:+10479184 | Msa0489770:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 3_4:+10478953 | Msa0489770:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_4:+10479360 | Msa0489770:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3_4:+10477587 | Msa0489770:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 3_4:+10477174 | Msa0489770:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 3_4:-10479384 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_4:+10479269 | Msa0489770:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 3_4:+10477738 | Msa0489770:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 3_4:+10477476 | Msa0489770:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_4:+10479361 | Msa0489770:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 3_4:-10477492 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 3_4:+10479893 | Msa0489770:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_4:+10479107 | Msa0489770:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 3_4:+10480050 | Msa0489770:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 3_4:-10478682 | None:intergenic |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 3_4:-10479651 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 3_4:-10478926 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3_4:+10479510 | Msa0489770:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 3_4:-10479074 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 3_4:-10479925 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 3_4:-10479226 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 3_4:-10477213 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 3_4:-10478922 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 3_4:-10479208 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 3_4:+10478684 | Msa0489770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGATATGATTTAT+TGG | + | chr3_4:10480139-10480158 | Msa0489770:three_prime_UTR | 10.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr3_4:10478825-10478844 | Msa0489770:CDS | 15.0% |
| !!! | ATTGATTGTTTTTATAAGTT+TGG | + | chr3_4:10480079-10480098 | Msa0489770:exon | 15.0% |
| !!! | TTTTATAAGTTTGGTTTTTT+AGG | + | chr3_4:10480088-10480107 | Msa0489770:three_prime_UTR | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3_4:10477300-10477319 | Msa0489770:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr3_4:10477586-10477605 | Msa0489770:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr3_4:10477587-10477606 | Msa0489770:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr3_4:10477900-10477919 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr3_4:10478090-10478109 | Msa0489770:intron | 20.0% |
| !!! | TTTAACTATGTTGTTTGTTT+AGG | + | chr3_4:10478190-10478209 | Msa0489770:intron | 20.0% |
| !!! | TTAACTATGTTGTTTGTTTA+GGG | + | chr3_4:10478191-10478210 | Msa0489770:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr3_4:10478320-10478339 | Msa0489770:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr3_4:10478383-10478402 | Msa0489770:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr3_4:10478866-10478885 | Msa0489770:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr3_4:10478867-10478886 | Msa0489770:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr3_4:10478895-10478914 | Msa0489770:CDS | 20.0% |
| !! | CTTATAAAAACAATCAATCA+GGG | - | chr3_4:10480077-10480096 | None:intergenic | 20.0% |
| !! | ACTTATAAAAACAATCAATC+AGG | - | chr3_4:10480078-10480097 | None:intergenic | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3_4:10477334-10477353 | Msa0489770:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr3_4:10477383-10477402 | Msa0489770:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr3_4:10477934-10477953 | Msa0489770:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr3_4:10477972-10477991 | Msa0489770:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr3_4:10478021-10478040 | Msa0489770:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr3_4:10478047-10478066 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr3_4:10478166-10478185 | Msa0489770:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr3_4:10478268-10478287 | Msa0489770:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr3_4:10478515-10478534 | Msa0489770:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr3_4:10478560-10478579 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr3_4:10478899-10478918 | Msa0489770:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3_4:10479092-10479111 | Msa0489770:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr3_4:10479266-10479285 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3_4:10479266-10479285 | Msa0489770:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr3_4:10479313-10479332 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr3_4:10479326-10479345 | Msa0489770:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr3_4:10479774-10479793 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr3_4:10479777-10479796 | Msa0489770:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr3_4:10479951-10479970 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr3_4:10479985-10480004 | Msa0489770:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr3_4:10477257-10477276 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr3_4:10477258-10477277 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr3_4:10477321-10477340 | Msa0489770:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr3_4:10477417-10477436 | Msa0489770:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr3_4:10477428-10477447 | Msa0489770:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr3_4:10477429-10477448 | Msa0489770:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr3_4:10477454-10477473 | Msa0489770:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3_4:10477593-10477612 | Msa0489770:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr3_4:10477659-10477678 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr3_4:10477699-10477718 | Msa0489770:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr3_4:10477732-10477751 | Msa0489770:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr3_4:10477786-10477805 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr3_4:10478025-10478044 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr3_4:10478029-10478048 | Msa0489770:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr3_4:10478053-10478072 | Msa0489770:intron | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | + | chr3_4:10478167-10478186 | Msa0489770:intron | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr3_4:10478232-10478251 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr3_4:10478544-10478563 | Msa0489770:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | chr3_4:10478733-10478752 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr3_4:10478781-10478800 | Msa0489770:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr3_4:10479229-10479248 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr3_4:10479230-10479249 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr3_4:10479231-10479250 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3_4:10479271-10479290 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3_4:10479269-10479288 | Msa0489770:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr3_4:10479360-10479379 | Msa0489770:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr3_4:10479433-10479452 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr3_4:10479434-10479453 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr3_4:10479445-10479464 | Msa0489770:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr3_4:10479613-10479632 | Msa0489770:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3_4:10479933-10479952 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | - | chr3_4:10480019-10480038 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | + | chr3_4:10477129-10477148 | Msa0489770:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr3_4:10477256-10477275 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr3_4:10477495-10477514 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3_4:10477512-10477531 | Msa0489770:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3_4:10477517-10477536 | Msa0489770:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3_4:10477518-10477537 | Msa0489770:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr3_4:10477551-10477570 | Msa0489770:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr3_4:10477630-10477649 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3_4:10477669-10477688 | Msa0489770:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr3_4:10477731-10477750 | Msa0489770:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr3_4:10477738-10477757 | Msa0489770:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr3_4:10477818-10477837 | Msa0489770:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr3_4:10477821-10477840 | Msa0489770:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr3_4:10477889-10477908 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr3_4:10477890-10477909 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr3_4:10477942-10477961 | Msa0489770:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | - | chr3_4:10478151-10478170 | None:intergenic | 35.0% | |
| ! | ATTTTCTTGCTTCTGCCATT+TGG | + | chr3_4:10478214-10478233 | Msa0489770:intron | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr3_4:10478354-10478373 | Msa0489770:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr3_4:10478577-10478596 | Msa0489770:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr3_4:10478674-10478693 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr3_4:10478724-10478743 | Msa0489770:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr3_4:10478736-10478755 | Msa0489770:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr3_4:10478737-10478756 | Msa0489770:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr3_4:10478749-10478768 | Msa0489770:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3_4:10479036-10479055 | Msa0489770:CDS | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr3_4:10479077-10479096 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3_4:10479106-10479125 | Msa0489770:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3_4:10479107-10479126 | Msa0489770:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr3_4:10479232-10479251 | Msa0489770:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr3_4:10479361-10479380 | Msa0489770:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr3_4:10479387-10479406 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr3_4:10479435-10479454 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr3_4:10479509-10479528 | Msa0489770:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr3_4:10479542-10479561 | Msa0489770:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr3_4:10479552-10479571 | Msa0489770:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr3_4:10479591-10479610 | Msa0489770:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr3_4:10479612-10479631 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | - | chr3_4:10479654-10479673 | None:intergenic | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr3_4:10479837-10479856 | Msa0489770:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr3_4:10479870-10479889 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr3_4:10479928-10479947 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr3_4:10479957-10479976 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | + | chr3_4:10480006-10480025 | Msa0489770:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | + | chr3_4:10480049-10480068 | Msa0489770:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | + | chr3_4:10480050-10480069 | Msa0489770:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | - | chr3_4:10477216-10477235 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr3_4:10477217-10477236 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr3_4:10477218-10477237 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr3_4:10477253-10477272 | Msa0489770:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr3_4:10477737-10477756 | Msa0489770:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr3_4:10477769-10477788 | Msa0489770:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr3_4:10478131-10478150 | Msa0489770:intron | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr3_4:10478143-10478162 | Msa0489770:intron | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | - | chr3_4:10478288-10478307 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr3_4:10478620-10478639 | Msa0489770:CDS | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr3_4:10478685-10478704 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr3_4:10478684-10478703 | Msa0489770:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr3_4:10478951-10478970 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr3_4:10478953-10478972 | Msa0489770:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3_4:10478966-10478985 | Msa0489770:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr3_4:10478988-10479007 | Msa0489770:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3_4:10479134-10479153 | Msa0489770:CDS | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr3_4:10479211-10479230 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr3_4:10479282-10479301 | Msa0489770:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3_4:10479283-10479302 | Msa0489770:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr3_4:10479383-10479402 | Msa0489770:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr3_4:10479508-10479527 | Msa0489770:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr3_4:10479510-10479529 | Msa0489770:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr3_4:10479555-10479574 | Msa0489770:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | + | chr3_4:10479666-10479685 | Msa0489770:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | - | chr3_4:10479703-10479722 | None:intergenic | 40.0% | |
| TGAAGCTGGAAAAAAGACAG+AGG | + | chr3_4:10479806-10479825 | Msa0489770:CDS | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr3_4:10479825-10479844 | Msa0489770:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr3_4:10479864-10479883 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | + | chr3_4:10479876-10479895 | Msa0489770:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr3_4:10477174-10477193 | Msa0489770:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr3_4:10477468-10477487 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3_4:10477522-10477541 | Msa0489770:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3_4:10477531-10477550 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3_4:10477534-10477553 | Msa0489770:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | - | chr3_4:10477642-10477661 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr3_4:10477825-10477844 | Msa0489770:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr3_4:10478705-10478724 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr3_4:10478745-10478764 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr3_4:10478965-10478984 | Msa0489770:CDS | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr3_4:10479072-10479091 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr3_4:10479125-10479144 | Msa0489770:CDS | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | - | chr3_4:10479679-10479698 | None:intergenic | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | - | chr3_4:10479863-10479882 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | + | chr3_4:10479892-10479911 | Msa0489770:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | + | chr3_4:10479893-10479912 | Msa0489770:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr3_4:10479924-10479943 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr3_4:10479925-10479944 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr3_4:10477480-10477499 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr3_4:10477744-10477763 | Msa0489770:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr3_4:10478756-10478775 | Msa0489770:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr3_4:10478917-10478936 | Msa0489770:CDS | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr3_4:10478925-10478944 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr3_4:10478929-10478948 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr3_4:10479184-10479203 | Msa0489770:CDS | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | + | chr3_4:10479891-10479910 | Msa0489770:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | + | chr3_4:10477476-10477495 | Msa0489770:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr3_4:10477747-10477766 | Msa0489770:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr3_4:10478920-10478939 | Msa0489770:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr3_4:10479189-10479208 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr3_4:10479792-10479811 | Msa0489770:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr3_4:10479190-10479209 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10477120 | 10480214 | 10477120 | ID=Msa0489770;Name=Msa0489770 |
| chr3_4 | mRNA | 10477120 | 10480214 | 10477120 | ID=Msa0489770-mRNA-1;Parent=Msa0489770;Name=Msa0489770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|135|818 |
| chr3_4 | exon | 10477120 | 10478050 | 10477120 | ID=Msa0489770-mRNA-1:exon:3375;Parent=Msa0489770-mRNA-1 |
| chr3_4 | exon | 10478554 | 10480214 | 10478554 | ID=Msa0489770-mRNA-1:exon:3376;Parent=Msa0489770-mRNA-1 |
| chr3_4 | CDS | 10477120 | 10478050 | 10477120 | ID=Msa0489770-mRNA-1:cds;Parent=Msa0489770-mRNA-1 |
| chr3_4 | CDS | 10478554 | 10480079 | 10478554 | ID=Msa0489770-mRNA-1:cds;Parent=Msa0489770-mRNA-1 |
| chr3_4 | three_prime_UTR | 10480080 | 10480214 | 10480080 | ID=Msa0489770-mRNA-1:three_prime_utr;Parent=Msa0489770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
