Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489900 | KEH33239.1 | 84.177 | 158 | 22 | 1 | 7 | 164 | 1 | 155 | 2.35e-89 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489900 | sp|Q9FKI4|NAA10_ARATH | 44.805 | 154 | 74 | 4 | 19 | 161 | 2 | 155 | 1.62e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489900 | A0A072UTR7 | 84.177 | 158 | 22 | 1 | 7 | 164 | 1 | 155 | 1.12e-89 | 267 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0489900 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489900 | MtrunA17_Chr3g0088851 | 85.263 | 95 | 14 | 0 | 14 | 108 | 1 | 95 | 2.09e-55 | 170 |
| Msa0489900 | MtrunA17_Chr3g0090311 | 47.742 | 155 | 70 | 4 | 19 | 162 | 2 | 156 | 9.20e-35 | 120 |
| Msa0489900 | MtrunA17_Chr3g0098461 | 38.710 | 155 | 86 | 5 | 14 | 162 | 1 | 152 | 3.19e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489900 | AT5G13780.1 | 44.805 | 154 | 74 | 4 | 19 | 161 | 2 | 155 | 1.64e-30 | 109 |
| Msa0489900 | AT1G03150.1 | 28.704 | 108 | 75 | 2 | 52 | 157 | 43 | 150 | 5.10e-11 | 58.5 |
Find 59 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTACCTGTTTCATGGTT+AGG | 0.232787 | 3_4:-10859695 | None:intergenic |
| TCACACGATGTGCCAATATT+CGG | 0.278549 | 3_4:-10859807 | None:intergenic |
| CACACGATGTGCCAATATTC+GGG | 0.303205 | 3_4:-10859806 | None:intergenic |
| TGTTACTTGTACCTGTTTCA+TGG | 0.316305 | 3_4:-10859700 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_4:+10859795 | Msa0489900:CDS |
| ATGCATACTTCAAAATATTA+AGG | 0.342057 | 3_4:-10862140 | None:intergenic |
| TTGTACCTGTTTCATGGTTA+GGG | 0.349033 | 3_4:-10859694 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_4:+10860704 | Msa0489900:CDS |
| GATTTAACATGTAGTACTTC+GGG | 0.365914 | 3_4:+10862023 | Msa0489900:intron |
| TTCAATTTCAGGTGTCAAAC+AGG | 0.387156 | 3_4:+10861813 | Msa0489900:intron |
| TGCATAAGAGTCGCAACAAT+TGG | 0.396481 | 3_4:+10859741 | Msa0489900:CDS |
| CTGAGTAATGAGAGGAAATA+TGG | 0.402178 | 3_4:+10862176 | Msa0489900:three_prime_UTR |
| CTCATCATCATCAAAATACT+TGG | 0.421813 | 3_4:-10860751 | None:intergenic |
| TTCTTCAGCCAGTCAAGATT+AGG | 0.429891 | 3_4:+10861862 | Msa0489900:three_prime_UTR |
| TAGAACCCTAACCATGAAAC+AGG | 0.443665 | 3_4:+10859689 | Msa0489900:CDS |
| AGTATGATATCATTTAAAGT+AGG | 0.445727 | 3_4:+10861923 | Msa0489900:three_prime_UTR |
| GCATAAGAGTCGCAACAATT+GGG | 0.455060 | 3_4:+10859742 | Msa0489900:CDS |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_4:+10860705 | Msa0489900:CDS |
| GTATGATATCATTTAAAGTA+GGG | 0.461983 | 3_4:+10861924 | Msa0489900:three_prime_UTR |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_4:+10860687 | Msa0489900:CDS |
| CGCCGAAAACACCATGGAAA+AGG | 0.465220 | 3_4:+10859986 | Msa0489900:CDS |
| CAATTGGGGACGTATTAGAT+TGG | 0.467644 | 3_4:+10859757 | Msa0489900:CDS |
| AAGACGTCTCAGTGCATGTT+CGG | 0.484289 | 3_4:+10860664 | Msa0489900:CDS |
| GGATTTAACATGTAGTACTT+CGG | 0.485711 | 3_4:+10862022 | Msa0489900:intron |
| GAAGGTCTTCCTCCTCCTGC+AGG | 0.489434 | 3_4:-10861842 | None:intergenic |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_4:+10859870 | Msa0489900:CDS |
| AGGAATTCTCCTGCAGGAGG+AGG | 0.521007 | 3_4:+10861833 | Msa0489900:three_prime_UTR |
| CCTTAACACCTAATCTTGAC+TGG | 0.533110 | 3_4:-10861870 | None:intergenic |
| AGTAACAATGTCGTCAAAGA+AGG | 0.537395 | 3_4:+10859716 | Msa0489900:CDS |
| CTCTCTGAAGGTGAAGAGGA+AGG | 0.542028 | 3_4:+10859882 | Msa0489900:CDS |
| TAATCTTGACTGGCTGAAGA+AGG | 0.548995 | 3_4:-10861860 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_4:+10860783 | Msa0489900:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_4:+10860782 | Msa0489900:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_4:+10859878 | Msa0489900:CDS |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3_4:-10859928 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.583224 | 3_4:-10859881 | None:intergenic |
| GTTCATAAGACATACTTCAA+AGG | 0.585016 | 3_4:-10861969 | None:intergenic |
| TCAAACAGGAATTCTCCTGC+AGG | 0.585715 | 3_4:+10861827 | Msa0489900:three_prime_UTR |
| TCTCTGAAGGTGAAGAGGAA+GGG | 0.587476 | 3_4:+10859883 | Msa0489900:CDS |
| AGAGGGAAGCGATACTAAAG+TGG | 0.589412 | 3_4:-10859911 | None:intergenic |
| GAAGGTGAAGAGGAAGGGAA+TGG | 0.590585 | 3_4:+10859888 | Msa0489900:CDS |
| CATAAGAGTCGCAACAATTG+GGG | 0.601975 | 3_4:+10859743 | Msa0489900:CDS |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3_4:-10859929 | None:intergenic |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3_4:+10860728 | Msa0489900:CDS |
| GATATCATTTAAAGTAGGGG+TGG | 0.609214 | 3_4:+10861928 | Msa0489900:three_prime_UTR |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_4:-10859878 | None:intergenic |
| TATGATATCATTTAAAGTAG+GGG | 0.616941 | 3_4:+10861925 | Msa0489900:three_prime_UTR |
| CACCGCCGCCGAAAACACCA+TGG | 0.627431 | 3_4:+10859980 | Msa0489900:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3_4:+10859939 | Msa0489900:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_4:-10860817 | None:intergenic |
| AACAGGAATTCTCCTGCAGG+AGG | 0.644166 | 3_4:+10861830 | Msa0489900:three_prime_UTR |
| AGTGAGTGCTGAGTAATGAG+AGG | 0.647864 | 3_4:+10862168 | Msa0489900:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_4:-10859941 | None:intergenic |
| ATGAGGATGCTATTGTCTTG+AGG | 0.652763 | 3_4:+10860769 | Msa0489900:CDS |
| CACGTCGCGGACGATTGCAG+CGG | 0.653844 | 3_4:+10859840 | Msa0489900:CDS |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_4:+10860784 | Msa0489900:CDS |
| AGCGATACCACGTTTACGAT+AGG | 0.690118 | 3_4:-10859946 | None:intergenic |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3_4:+10860722 | Msa0489900:CDS |
| TGAAAAGCTTATTCACGTCG+CGG | 0.715250 | 3_4:+10859827 | Msa0489900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTATAATTTTGTTTTT+TGG | + | chr3_4:10860027-10860046 | Msa0489900:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+AGG | + | chr3_4:10860033-10860052 | Msa0489900:intron | 15.0% |
| !! | AACAAACAAAAAAAATCAAA+GGG | - | chr3_4:10861480-10861499 | None:intergenic | 15.0% |
| !!! | TTTGTTTTACAAATATTCTT+AGG | + | chr3_4:10861504-10861523 | Msa0489900:intron | 15.0% |
| !!! | TTGTTTTACAAATATTCTTA+GGG | + | chr3_4:10861505-10861524 | Msa0489900:intron | 15.0% |
| !!! | TACTTTTAACTAGTTATGTA+TGG | + | chr3_4:10860088-10860107 | Msa0489900:intron | 20.0% |
| !! | AGAAAACCAAAAAAAAATCT+CGG | - | chr3_4:10860486-10860505 | None:intergenic | 20.0% |
| !!! | AGACCTTTTTTTTATCTTTT+TGG | + | chr3_4:10860574-10860593 | Msa0489900:intron | 20.0% |
| !! | CAACCAAAAAGATAAAAAAA+AGG | - | chr3_4:10860580-10860599 | None:intergenic | 20.0% |
| !! | GAAAATAATTGAAACTTTGA+TGG | + | chr3_4:10860874-10860893 | Msa0489900:intron | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | + | chr3_4:10860974-10860993 | Msa0489900:intron | 20.0% |
| !! | CAACAAACAAAAAAAATCAA+AGG | - | chr3_4:10861481-10861500 | None:intergenic | 20.0% |
| !!! | TGTTTTACAAATATTCTTAG+GGG | + | chr3_4:10861506-10861525 | Msa0489900:intron | 20.0% |
| !!! | AGTATGATATCATTTAAAGT+AGG | + | chr3_4:10861923-10861942 | Msa0489900:three_prime_UTR | 20.0% |
| !!! | GTATGATATCATTTAAAGTA+GGG | + | chr3_4:10861924-10861943 | Msa0489900:three_prime_UTR | 20.0% |
| !!! | TATGATATCATTTAAAGTAG+GGG | + | chr3_4:10861925-10861944 | Msa0489900:three_prime_UTR | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | + | chr3_4:10861993-10862012 | Msa0489900:intron | 20.0% |
| !! | ATGCATACTTCAAAATATTA+AGG | - | chr3_4:10862143-10862162 | None:intergenic | 20.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | + | chr3_4:10860402-10860421 | Msa0489900:intron | 25.0% |
| ! | TACATTCAAGAAAATGGAAA+AGG | - | chr3_4:10860850-10860869 | None:intergenic | 25.0% |
| ! | TCACAATACATTCAAGAAAA+TGG | - | chr3_4:10860856-10860875 | None:intergenic | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | + | chr3_4:10860973-10860992 | Msa0489900:intron | 25.0% |
| !!! | TTTTGATCGTTATGTTTTTG+TGG | + | chr3_4:10861011-10861030 | Msa0489900:intron | 25.0% |
| !!! | AATTTCTTGTGTAGTTCTAA+TGG | + | chr3_4:10861187-10861206 | Msa0489900:intron | 25.0% |
| !!! | ATTTCTTGTGTAGTTCTAAT+GGG | + | chr3_4:10861188-10861207 | Msa0489900:intron | 25.0% |
| !!! | TGTTGCATATTGATTTTGAA+TGG | + | chr3_4:10861276-10861295 | Msa0489900:intron | 25.0% |
| ! | AAGTTAACTACGATCTTATA+AGG | + | chr3_4:10861335-10861354 | Msa0489900:intron | 25.0% |
| ! | CAATCAATTAAGAGAACAAA+TGG | - | chr3_4:10861564-10861583 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | + | chr3_4:10861562-10861581 | Msa0489900:intron | 25.0% |
| ! | CTTATTGAGGATTTAGATTA+GGG | + | chr3_4:10861609-10861628 | Msa0489900:intron | 25.0% |
| ! | TAATTGCAATTCATTAAACG+AGG | - | chr3_4:10861726-10861745 | None:intergenic | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | + | chr3_4:10862055-10862074 | Msa0489900:three_prime_UTR | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | + | chr3_4:10862056-10862075 | Msa0489900:three_prime_UTR | 25.0% |
| TAACTAGTTATGTATGGAGT+TGG | + | chr3_4:10860094-10860113 | Msa0489900:intron | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | + | chr3_4:10860102-10860121 | Msa0489900:intron | 30.0% |
| ! | TTTTCAGATAGATCACACAA+TGG | - | chr3_4:10860207-10860226 | None:intergenic | 30.0% |
| AGAAAACAGAAAATCATCAC+GGG | - | chr3_4:10860230-10860249 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | - | chr3_4:10860231-10860250 | None:intergenic | 30.0% | |
| AAACCAAAAAAAAATCTCGG+AGG | - | chr3_4:10860483-10860502 | None:intergenic | 30.0% | |
| ! | TTTCTTGTTTCCTAATCTTG+TGG | + | chr3_4:10860501-10860520 | Msa0489900:intron | 30.0% |
| ! | ACATTGTAACAGACTTTTCA+TGG | - | chr3_4:10860619-10860638 | None:intergenic | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | + | chr3_4:10860632-10860651 | Msa0489900:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | + | chr3_4:10860704-10860723 | Msa0489900:CDS | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | + | chr3_4:10860705-10860724 | Msa0489900:CDS | 30.0% |
| CTCATCATCATCAAAATACT+TGG | - | chr3_4:10860754-10860773 | None:intergenic | 30.0% | |
| !!! | CAAGTATTTTGATGATGATG+AGG | + | chr3_4:10860752-10860771 | Msa0489900:CDS | 30.0% |
| TCAAGAAAATGGAAAAGGAT+GGG | - | chr3_4:10860845-10860864 | None:intergenic | 30.0% | |
| TTCAAGAAAATGGAAAAGGA+TGG | - | chr3_4:10860846-10860865 | None:intergenic | 30.0% | |
| ! | ATAATTGAAACTTTGATGGC+TGG | + | chr3_4:10860878-10860897 | Msa0489900:intron | 30.0% |
| CTGGTTTAATATTGACATGA+TGG | + | chr3_4:10860897-10860916 | Msa0489900:intron | 30.0% | |
| TTATCCAAGGATGAAAAAGT+CGG | - | chr3_4:10861059-10861078 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | - | chr3_4:10861072-10861091 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | + | chr3_4:10861072-10861091 | Msa0489900:intron | 30.0% | |
| ! | TATGTCTAGTTTATCTGTGT+AGG | + | chr3_4:10861116-10861135 | Msa0489900:intron | 30.0% |
| ! | ATGTCTAGTTTATCTGTGTA+GGG | + | chr3_4:10861117-10861136 | Msa0489900:intron | 30.0% |
| !!! | TGCATATTGATTTTGAATGG+AGG | + | chr3_4:10861279-10861298 | Msa0489900:intron | 30.0% |
| GCTTATTGAGGATTTAGATT+AGG | + | chr3_4:10861608-10861627 | Msa0489900:intron | 30.0% | |
| GAAAATATGCAAGTAGTAAG+AGG | - | chr3_4:10861701-10861720 | None:intergenic | 30.0% | |
| ! | TGCTGAAGTTGATTAAATCA+TGG | + | chr3_4:10861779-10861798 | Msa0489900:intron | 30.0% |
| ! | GATTAAATCATGGTGTTTTC+TGG | + | chr3_4:10861789-10861808 | Msa0489900:intron | 30.0% |
| ! | TGTTTTCTGGATTCAATTTC+AGG | + | chr3_4:10861802-10861821 | Msa0489900:intron | 30.0% |
| GTTCATAAGACATACTTCAA+AGG | - | chr3_4:10861972-10861991 | None:intergenic | 30.0% | |
| TAACCATAGATTAGGTGTTA+AGG | + | chr3_4:10862001-10862020 | Msa0489900:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | - | chr3_4:10862007-10862026 | None:intergenic | 30.0% | |
| GGATTTAACATGTAGTACTT+CGG | + | chr3_4:10862022-10862041 | Msa0489900:intron | 30.0% | |
| GATTTAACATGTAGTACTTC+GGG | + | chr3_4:10862023-10862042 | Msa0489900:intron | 30.0% | |
| TTGTACCTGTTTCATGGTTA+GGG | - | chr3_4:10859697-10859716 | None:intergenic | 35.0% | |
| ! | TGTTACTTGTACCTGTTTCA+TGG | - | chr3_4:10859703-10859722 | None:intergenic | 35.0% |
| AGTAACAATGTCGTCAAAGA+AGG | + | chr3_4:10859716-10859735 | Msa0489900:CDS | 35.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | - | chr3_4:10859931-10859950 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+CGG | - | chr3_4:10859991-10860010 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | + | chr3_4:10859991-10860010 | Msa0489900:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | - | chr3_4:10860000-10860019 | None:intergenic | 35.0% |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | + | chr3_4:10860107-10860126 | Msa0489900:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | + | chr3_4:10860119-10860138 | Msa0489900:intron | 35.0% | |
| ! | CGTGATGATTTTCTGTTTTC+TGG | + | chr3_4:10860229-10860248 | Msa0489900:intron | 35.0% |
| CTAGGATTATCTTCTATTCC+TGG | + | chr3_4:10860273-10860292 | Msa0489900:intron | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | + | chr3_4:10860279-10860298 | Msa0489900:intron | 35.0% | |
| TAAAGGGAGTGGCAATAATT+CGG | - | chr3_4:10860320-10860339 | None:intergenic | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | + | chr3_4:10860405-10860424 | Msa0489900:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | + | chr3_4:10860409-10860428 | Msa0489900:intron | 35.0% |
| ATGTGTAATTTGACTGAAGG+TGG | + | chr3_4:10860635-10860654 | Msa0489900:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | + | chr3_4:10860636-10860655 | Msa0489900:intron | 35.0% | |
| AAGAAAATGGAAAAGGATGG+GGG | - | chr3_4:10860843-10860862 | None:intergenic | 35.0% | |
| CAAGAAAATGGAAAAGGATG+GGG | - | chr3_4:10860844-10860863 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | + | chr3_4:10861052-10861071 | Msa0489900:intron | 35.0% |
| ACTAGTACACCATAGTGAAA+TGG | - | chr3_4:10861252-10861271 | None:intergenic | 35.0% | |
| TAACTTCATGCAGAGTAACA+CGG | - | chr3_4:10861321-10861340 | None:intergenic | 35.0% | |
| TAGCACCAAAGGATTAAAGA+TGG | - | chr3_4:10861412-10861431 | None:intergenic | 35.0% | |
| ATGTTGCTCATTGCTTATTG+AGG | + | chr3_4:10861596-10861615 | Msa0489900:intron | 35.0% | |
| ATTGAGGATTTAGATTAGGG+TGG | + | chr3_4:10861612-10861631 | Msa0489900:intron | 35.0% | |
| TTGAGGATTTAGATTAGGGT+GGG | + | chr3_4:10861613-10861632 | Msa0489900:intron | 35.0% | |
| ! | TTCAATTTCAGGTGTCAAAC+AGG | + | chr3_4:10861813-10861832 | Msa0489900:intron | 35.0% |
| ! | GATATCATTTAAAGTAGGGG+TGG | + | chr3_4:10861928-10861947 | Msa0489900:three_prime_UTR | 35.0% |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | + | chr3_4:10862059-10862078 | Msa0489900:three_prime_UTR | 35.0% |
| CTGAGTAATGAGAGGAAATA+TGG | + | chr3_4:10862176-10862195 | Msa0489900:three_prime_UTR | 35.0% | |
| TAGAACCCTAACCATGAAAC+AGG | + | chr3_4:10859689-10859708 | Msa0489900:CDS | 40.0% | |
| CTTGTACCTGTTTCATGGTT+AGG | - | chr3_4:10859698-10859717 | None:intergenic | 40.0% | |
| TGCATAAGAGTCGCAACAAT+TGG | + | chr3_4:10859741-10859760 | Msa0489900:CDS | 40.0% | |
| GCATAAGAGTCGCAACAATT+GGG | + | chr3_4:10859742-10859761 | Msa0489900:CDS | 40.0% | |
| CATAAGAGTCGCAACAATTG+GGG | + | chr3_4:10859743-10859762 | Msa0489900:CDS | 40.0% | |
| CAATTGGGGACGTATTAGAT+TGG | + | chr3_4:10859757-10859776 | Msa0489900:CDS | 40.0% | |
| TCACACGATGTGCCAATATT+CGG | - | chr3_4:10859810-10859829 | None:intergenic | 40.0% | |
| TGAAAAGCTTATTCACGTCG+CGG | + | chr3_4:10859827-10859846 | Msa0489900:CDS | 40.0% | |
| GATAGGTATGGTGAACAAAG+AGG | - | chr3_4:10859932-10859951 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | - | chr3_4:10859944-10859963 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | + | chr3_4:10860047-10860066 | Msa0489900:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | + | chr3_4:10860048-10860067 | Msa0489900:intron | 40.0% |
| !! | TCACTTGTGGGTTAGGTATA+GGG | + | chr3_4:10860060-10860079 | Msa0489900:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | + | chr3_4:10860124-10860143 | Msa0489900:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | + | chr3_4:10860138-10860157 | Msa0489900:intron | 40.0% |
| GGTAGAATCTGAGTTTCACT+AGG | + | chr3_4:10860250-10860269 | Msa0489900:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | + | chr3_4:10860255-10860274 | Msa0489900:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | + | chr3_4:10860287-10860306 | Msa0489900:intron | 40.0% | |
| AAAGGGAGTGGCAATAATTC+GGG | - | chr3_4:10860319-10860338 | None:intergenic | 40.0% | |
| !! | TTCTGTAGCTAGTCTTGTCT+GGG | + | chr3_4:10860445-10860464 | Msa0489900:intron | 40.0% |
| !!! | GGTCCTCCGAGATTTTTTTT+TGG | + | chr3_4:10860477-10860496 | Msa0489900:intron | 40.0% |
| TGTTTCCTAATCTTGTGGTG+CGG | + | chr3_4:10860506-10860525 | Msa0489900:intron | 40.0% | |
| AAAATCCGCACCACAAGATT+AGG | - | chr3_4:10860514-10860533 | None:intergenic | 40.0% | |
| ATGAGGATGCTATTGTCTTG+AGG | + | chr3_4:10860769-10860788 | Msa0489900:CDS | 40.0% | |
| TGTCTTGAGGAAGATACTCA+AGG | + | chr3_4:10860782-10860801 | Msa0489900:CDS | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | + | chr3_4:10860783-10860802 | Msa0489900:CDS | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | + | chr3_4:10860784-10860803 | Msa0489900:CDS | 40.0% | |
| AGAAAATGGAAAAGGATGGG+GGG | - | chr3_4:10860842-10860861 | None:intergenic | 40.0% | |
| ! | TCTAGTTTATCTGTGTAGGG+TGG | + | chr3_4:10861120-10861139 | Msa0489900:intron | 40.0% |
| CAGTGCTTTCCATTTCACTA+TGG | + | chr3_4:10861240-10861259 | Msa0489900:intron | 40.0% | |
| ATTAAAGATGGACCAGACAG+AGG | - | chr3_4:10861400-10861419 | None:intergenic | 40.0% | |
| CTGGTCCATCTTTAATCCTT+TGG | + | chr3_4:10861404-10861423 | Msa0489900:intron | 40.0% | |
| !! | TTAATCCTTTGGTGCTACCT+TGG | + | chr3_4:10861415-10861434 | Msa0489900:intron | 40.0% |
| !! | TAATCCTTTGGTGCTACCTT+GGG | + | chr3_4:10861416-10861435 | Msa0489900:intron | 40.0% |
| !! | CTACCTTGGGTTTGTTTTTC+TGG | + | chr3_4:10861429-10861448 | Msa0489900:intron | 40.0% |
| GTACCAGAAAAACAAACCCA+AGG | - | chr3_4:10861435-10861454 | None:intergenic | 40.0% | |
| TTCTGGTACTCTGCTCTTAT+TGG | + | chr3_4:10861446-10861465 | Msa0489900:intron | 40.0% | |
| TGAGGATTTAGATTAGGGTG+GGG | + | chr3_4:10861614-10861633 | Msa0489900:intron | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | + | chr3_4:10861641-10861660 | Msa0489900:intron | 40.0% | |
| !! | ACTTGGTGTAAAAAGTCCTG+AGG | + | chr3_4:10861658-10861677 | Msa0489900:intron | 40.0% |
| AGTCCTGAGGATCATAACTA+TGG | + | chr3_4:10861671-10861690 | Msa0489900:intron | 40.0% | |
| ACACCATAGTTATGATCCTC+AGG | - | chr3_4:10861677-10861696 | None:intergenic | 40.0% | |
| ! | TAATCTTGACTGGCTGAAGA+AGG | - | chr3_4:10861863-10861882 | None:intergenic | 40.0% |
| TTCTTCAGCCAGTCAAGATT+AGG | + | chr3_4:10861862-10861881 | Msa0489900:three_prime_UTR | 40.0% | |
| CCTTAACACCTAATCTTGAC+TGG | - | chr3_4:10861873-10861892 | None:intergenic | 40.0% | |
| CCAGTCAAGATTAGGTGTTA+AGG | + | chr3_4:10861870-10861889 | Msa0489900:intron | 40.0% | |
| !!! | CTTCGGGTTTTTTCGAAGTT+TGG | + | chr3_4:10862039-10862058 | Msa0489900:three_prime_UTR | 40.0% |
| CACACGATGTGCCAATATTC+GGG | - | chr3_4:10859809-10859828 | None:intergenic | 45.0% | |
| ! | TCTCTGAAGGTGAAGAGGAA+GGG | + | chr3_4:10859883-10859902 | Msa0489900:CDS | 45.0% |
| AGAGGGAAGCGATACTAAAG+TGG | - | chr3_4:10859914-10859933 | None:intergenic | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | + | chr3_4:10859939-10859958 | Msa0489900:CDS | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | - | chr3_4:10859949-10859968 | None:intergenic | 45.0% | |
| ! | CTTTTCCATGGTGTTTTCGG+CGG | - | chr3_4:10859988-10860007 | None:intergenic | 45.0% |
| ! | AGGTTTGTCACTTGTGGGTT+AGG | + | chr3_4:10860053-10860072 | Msa0489900:intron | 45.0% |
| !! | GTCACTTGTGGGTTAGGTAT+AGG | + | chr3_4:10860059-10860078 | Msa0489900:intron | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | + | chr3_4:10860137-10860156 | Msa0489900:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | + | chr3_4:10860139-10860158 | Msa0489900:intron | 45.0% |
| ATTGCCACTCCCTTTATGAG+TGG | + | chr3_4:10860324-10860343 | Msa0489900:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | + | chr3_4:10860325-10860344 | Msa0489900:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | - | chr3_4:10860336-10860355 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | + | chr3_4:10860348-10860367 | Msa0489900:intron | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | - | chr3_4:10860359-10860378 | None:intergenic | 45.0% | |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | + | chr3_4:10860361-10860380 | Msa0489900:intron | 45.0% |
| !! | CTTCTGTAGCTAGTCTTGTC+TGG | + | chr3_4:10860444-10860463 | Msa0489900:intron | 45.0% |
| !! | TCTGTAGCTAGTCTTGTCTG+GGG | + | chr3_4:10860446-10860465 | Msa0489900:intron | 45.0% |
| AAGACGTCTCAGTGCATGTT+CGG | + | chr3_4:10860664-10860683 | Msa0489900:CDS | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | + | chr3_4:10860728-10860747 | Msa0489900:CDS | 45.0% | |
| CTGTAAATTGTGCCTCTGTC+TGG | + | chr3_4:10861385-10861404 | Msa0489900:intron | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | + | chr3_4:10861623-10861642 | Msa0489900:intron | 45.0% |
| TCAAACAGGAATTCTCCTGC+AGG | + | chr3_4:10861827-10861846 | Msa0489900:three_prime_UTR | 45.0% | |
| !! | AGTGAGTGCTGAGTAATGAG+AGG | + | chr3_4:10862168-10862187 | Msa0489900:three_prime_UTR | 45.0% |
| CTCGTTACTCGCCCGAATAT+TGG | + | chr3_4:10859795-10859814 | Msa0489900:CDS | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | + | chr3_4:10859870-10859889 | Msa0489900:CDS | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | - | chr3_4:10859884-10859903 | None:intergenic | 50.0% | |
| ! | CTCTCTGAAGGTGAAGAGGA+AGG | + | chr3_4:10859882-10859901 | Msa0489900:CDS | 50.0% |
| GAAGGTGAAGAGGAAGGGAA+TGG | + | chr3_4:10859888-10859907 | Msa0489900:CDS | 50.0% | |
| CGCCGAAAACACCATGGAAA+AGG | + | chr3_4:10859986-10860005 | Msa0489900:CDS | 50.0% | |
| !! | TGTGGGTTAGGTATAGGGTG+TGG | + | chr3_4:10860065-10860084 | Msa0489900:intron | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | + | chr3_4:10860142-10860161 | Msa0489900:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | + | chr3_4:10860143-10860162 | Msa0489900:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | + | chr3_4:10860147-10860166 | Msa0489900:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | - | chr3_4:10860294-10860313 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | - | chr3_4:10860337-10860356 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | + | chr3_4:10860347-10860366 | Msa0489900:intron | 50.0% | |
| GGCGAAACCAATTCTCTGTG+GGG | + | chr3_4:10860349-10860368 | Msa0489900:intron | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | - | chr3_4:10860553-10860572 | None:intergenic | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | - | chr3_4:10860561-10860580 | None:intergenic | 50.0% | |
| AAGAGCAACTCTGCAGCTCT+TGG | + | chr3_4:10860687-10860706 | Msa0489900:CDS | 50.0% | |
| !! | GATGGGTTACACACTTCACG+AGG | + | chr3_4:10860722-10860741 | Msa0489900:CDS | 50.0% |
| ATCTGTGTAGGGTGGACATG+AGG | + | chr3_4:10861128-10861147 | Msa0489900:intron | 50.0% | |
| ! | GTGGACATGAGGTCAGGTTT+TGG | + | chr3_4:10861139-10861158 | Msa0489900:intron | 50.0% |
| CAAACCCAAGGTAGCACCAA+AGG | - | chr3_4:10861423-10861442 | None:intergenic | 50.0% | |
| AACAGGAATTCTCCTGCAGG+AGG | + | chr3_4:10861830-10861849 | Msa0489900:three_prime_UTR | 50.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | - | chr3_4:10859881-10859900 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | + | chr3_4:10859878-10859897 | Msa0489900:CDS | 55.0% |
| ! | TTCCATGGTGTTTTCGGCGG+CGG | - | chr3_4:10859985-10860004 | None:intergenic | 55.0% |
| CCTCCCACTCATAAAGGGAG+TGG | - | chr3_4:10860331-10860350 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | + | chr3_4:10860328-10860347 | Msa0489900:intron | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | - | chr3_4:10860820-10860839 | None:intergenic | 55.0% | |
| TGGAAAAGGATGGGGGGAGT+GGG | - | chr3_4:10860836-10860855 | None:intergenic | 55.0% | |
| ATGGAAAAGGATGGGGGGAG+TGG | - | chr3_4:10860837-10860856 | None:intergenic | 55.0% | |
| TGTAGGGTGGACATGAGGTC+AGG | + | chr3_4:10861133-10861152 | Msa0489900:intron | 55.0% | |
| AGGAATTCTCCTGCAGGAGG+AGG | + | chr3_4:10861833-10861852 | Msa0489900:three_prime_UTR | 55.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | + | chr3_4:10860156-10860175 | Msa0489900:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | + | chr3_4:10860161-10860180 | Msa0489900:intron | 60.0% | |
| !! | GTCTTGTCTGGGGAGCGTTC+TGG | + | chr3_4:10860456-10860475 | Msa0489900:intron | 60.0% |
| GGGGAGTGGGTCTCACAGTT+AGG | - | chr3_4:10860823-10860842 | None:intergenic | 60.0% | |
| GAAGGTCTTCCTCCTCCTGC+AGG | - | chr3_4:10861845-10861864 | None:intergenic | 60.0% | |
| CACGTCGCGGACGATTGCAG+CGG | + | chr3_4:10859840-10859859 | Msa0489900:CDS | 65.0% | |
| CACCGCCGCCGAAAACACCA+TGG | + | chr3_4:10859980-10859999 | Msa0489900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10859684 | 10862199 | 10859684 | ID=Msa0489900;Name=Msa0489900 |
| chr3_4 | mRNA | 10859684 | 10862199 | 10859684 | ID=Msa0489900-mRNA-1;Parent=Msa0489900;Name=Msa0489900-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|1|0.8|1|0.25|0.4|5|300|164 |
| chr3_4 | exon | 10859684 | 10860007 | 10859684 | ID=Msa0489900-mRNA-1:exon:3459;Parent=Msa0489900-mRNA-1 |
| chr3_4 | exon | 10860654 | 10860826 | 10860654 | ID=Msa0489900-mRNA-1:exon:3460;Parent=Msa0489900-mRNA-1 |
| chr3_4 | exon | 10861824 | 10861883 | 10861824 | ID=Msa0489900-mRNA-1:exon:3461;Parent=Msa0489900-mRNA-1 |
| chr3_4 | exon | 10861906 | 10861976 | 10861906 | ID=Msa0489900-mRNA-1:exon:3462;Parent=Msa0489900-mRNA-1 |
| chr3_4 | exon | 10862033 | 10862199 | 10862033 | ID=Msa0489900-mRNA-1:exon:3463;Parent=Msa0489900-mRNA-1 |
| chr3_4 | CDS | 10859684 | 10860007 | 10859684 | ID=Msa0489900-mRNA-1:cds;Parent=Msa0489900-mRNA-1 |
| chr3_4 | CDS | 10860654 | 10860824 | 10860654 | ID=Msa0489900-mRNA-1:cds;Parent=Msa0489900-mRNA-1 |
| chr3_4 | three_prime_UTR | 10860825 | 10860826 | 10860825 | ID=Msa0489900-mRNA-1:three_prime_utr;Parent=Msa0489900-mRNA-1 |
| chr3_4 | three_prime_UTR | 10861824 | 10861883 | 10861824 | ID=Msa0489900-mRNA-1:three_prime_utr;Parent=Msa0489900-mRNA-1 |
| chr3_4 | three_prime_UTR | 10861906 | 10861976 | 10861906 | ID=Msa0489900-mRNA-1:three_prime_utr;Parent=Msa0489900-mRNA-1 |
| chr3_4 | three_prime_UTR | 10862033 | 10862199 | 10862033 | ID=Msa0489900-mRNA-1:three_prime_utr;Parent=Msa0489900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
