Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490070 | XP_039687084.1 | 82.500 | 120 | 21 | 0 | 65 | 184 | 1 | 120 | 1.69e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490070 | G7INX6 | 82.500 | 120 | 21 | 0 | 65 | 184 | 1 | 120 | 8.07e-65 | 204 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0490070 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490070 | MtrunA17_Chr2g0281511 | 82.500 | 120 | 21 | 0 | 65 | 184 | 1 | 120 | 1.55e-68 | 204 |
| Msa0490070 | MtrunA17_Chr2g0309121 | 80.833 | 120 | 22 | 1 | 65 | 184 | 1 | 119 | 9.59e-66 | 197 |
| Msa0490070 | MtrunA17_Chr3g0081891 | 80.000 | 80 | 16 | 0 | 65 | 144 | 1 | 80 | 2.88e-41 | 134 |
| Msa0490070 | MtrunA17_Chr7g0276661 | 33.588 | 131 | 67 | 4 | 71 | 183 | 38 | 166 | 1.88e-17 | 75.9 |
| Msa0490070 | MtrunA17_Chr0c01g0489371 | 36.290 | 124 | 75 | 2 | 53 | 174 | 193 | 314 | 1.26e-15 | 73.2 |
| Msa0490070 | MtrunA17_Chr8g0356961 | 39.362 | 94 | 55 | 1 | 83 | 174 | 72 | 165 | 9.94e-15 | 68.6 |
| Msa0490070 | MtrunA17_Chr8g0372431 | 27.835 | 97 | 70 | 0 | 88 | 184 | 6 | 102 | 4.09e-14 | 65.1 |
| Msa0490070 | MtrunA17_Chr5g0430431 | 35.955 | 89 | 47 | 1 | 101 | 179 | 165 | 253 | 1.26e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCAACGGTCCTGAATT+AGG | 0.221297 | 3_4:+11417838 | Msa0490070:CDS |
| GAAGTCAACGGTCCTGAATT+AGG | 0.221297 | 3_4:+11418264 | Msa0490070:CDS |
| AAAATGCCGATGTTCATTAT+TGG | 0.252563 | 3_4:+11418295 | Msa0490070:CDS |
| AAAATGTCGATGTTCATTAT+TGG | 0.262235 | 3_4:+11417869 | Msa0490070:CDS |
| TACCAGTTTCTTCGTCAAAA+AGG | 0.277417 | 3_4:-11418516 | None:intergenic |
| TAATGTTATTGCTTCTACTT+TGG | 0.311699 | 3_4:+11417897 | Msa0490070:CDS |
| TAATGTTATTGCTTCTACTT+TGG | 0.311699 | 3_4:+11418323 | Msa0490070:CDS |
| GTAGCATACATCCTATTAAA+AGG | 0.335252 | 3_4:-11418670 | None:intergenic |
| TGTTTATGTTATATATCATT+TGG | 0.337645 | 3_4:+11417785 | Msa0490070:CDS |
| TTTGGATGGAAACAATGTTT+TGG | 0.360997 | 3_4:+11417915 | Msa0490070:CDS |
| TTTGGATGGAAACAATGTTT+TGG | 0.360997 | 3_4:+11418341 | Msa0490070:CDS |
| GTACGGCTTTGTTCTTGAAA+AGG | 0.418940 | 3_4:+11418606 | Msa0490070:CDS |
| AAGTCAACGGTCCTGAATTA+GGG | 0.429565 | 3_4:+11417839 | Msa0490070:CDS |
| AAGTCAACGGTCCTGAATTA+GGG | 0.429565 | 3_4:+11418265 | Msa0490070:CDS |
| GTTATTGCTTCTACTTTGGA+TGG | 0.442931 | 3_4:+11417901 | Msa0490070:CDS |
| GTTATTGCTTCTACTTTGGA+TGG | 0.442931 | 3_4:+11418327 | Msa0490070:CDS |
| TACGGCTTTGTTCTTGAAAA+GGG | 0.445793 | 3_4:+11418607 | Msa0490070:CDS |
| GCATGCATCAGAAGTACATA+GGG | 0.496344 | 3_4:+11418575 | Msa0490070:CDS |
| CTTGAAAAGGGCCTAAAAGT+TGG | 0.503487 | 3_4:+11418619 | Msa0490070:CDS |
| AGCATGCATCAGAAGTACAT+AGG | 0.546367 | 3_4:+11418574 | Msa0490070:CDS |
| CATCAGAAGTACATAGGGAG+AGG | 0.578101 | 3_4:+11418580 | Msa0490070:CDS |
| AGAAGTACATAGGGAGAGGA+TGG | 0.580923 | 3_4:+11418584 | Msa0490070:CDS |
| TACATAGGGAGAGGATGGTA+CGG | 0.597869 | 3_4:+11418589 | Msa0490070:CDS |
| ATACTTCCAATAATGAACAT+CGG | 0.656056 | 3_4:-11418301 | None:intergenic |
| ACATTCTCAGCAACACCTCG+AGG | 0.684927 | 3_4:-11418466 | None:intergenic |
| GAGACTGGAGTTGAAGTCAA+CGG | 0.686388 | 3_4:+11417826 | Msa0490070:CDS |
| GAGACTGGAGTTGAAGTCAA+CGG | 0.686388 | 3_4:+11418252 | Msa0490070:CDS |
| GAATTAGTCTCAGTTAACGA+CGG | 0.726011 | 3_4:-11418692 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTATATCTTTTTA+AGG | + | chr3_4:11417148-11417167 | Msa0490070:intron | 10.0% |
| !!! | TAAACTAATAACTATTATTT+TGG | + | chr3_4:11417357-11417376 | Msa0490070:intron | 10.0% |
| !! | GCTATTAAAAAAATAAAATA+GGG | - | chr3_4:11417747-11417766 | None:intergenic | 10.0% |
| !! | TGCTATTAAAAAAATAAAAT+AGG | - | chr3_4:11417748-11417767 | None:intergenic | 10.0% |
| !! | GCTATTAAAAAAATAAAATA+GGG | - | chr3_4:11417747-11417766 | None:intergenic | 10.0% |
| !! | TGCTATTAAAAAAATAAAAT+AGG | - | chr3_4:11417748-11417767 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTATATCTTTTTA+AGG | + | chr3_4:11417148-11417167 | Msa0490070:intron | 10.0% |
| !!! | TAAACTAATAACTATTATTT+TGG | + | chr3_4:11417357-11417376 | Msa0490070:intron | 10.0% |
| !! | GCTATTAAAAAAATAAAATA+GGG | - | chr3_4:11417747-11417766 | None:intergenic | 10.0% |
| !! | TGCTATTAAAAAAATAAAAT+AGG | - | chr3_4:11417748-11417767 | None:intergenic | 10.0% |
| !! | GCTATTAAAAAAATAAAATA+GGG | - | chr3_4:11417747-11417766 | None:intergenic | 10.0% |
| !! | TGCTATTAAAAAAATAAAAT+AGG | - | chr3_4:11417748-11417767 | None:intergenic | 10.0% |
| !! | ATTTATAAACACAATTGTTA+AGG | - | chr3_4:11416767-11416786 | None:intergenic | 15.0% |
| !!! | AATGTTTATAGTACAAATTT+TGG | + | chr3_4:11416811-11416830 | Msa0490070:intron | 15.0% |
| !! | TAATAGGAAATACATATAAA+TGG | - | chr3_4:11416920-11416939 | None:intergenic | 15.0% |
| !! | TATATGTATTTCCTATTAAT+TGG | + | chr3_4:11416922-11416941 | Msa0490070:intron | 15.0% |
| !!! | TCTTATATACAAATATTTTG+TGG | + | chr3_4:11416977-11416996 | Msa0490070:intron | 15.0% |
| !! | AACTCAATGATTAAAAAAAT+TGG | + | chr3_4:11417055-11417074 | Msa0490070:intron | 15.0% |
| !!! | TAATAACTATTATTTTGGAA+AGG | + | chr3_4:11417362-11417381 | Msa0490070:intron | 15.0% |
| !!! | AATAACTATTATTTTGGAAA+GGG | + | chr3_4:11417363-11417382 | Msa0490070:intron | 15.0% |
| !!! | GACATTAATTATATTTTGTT+TGG | + | chr3_4:11417463-11417482 | Msa0490070:intron | 15.0% |
| !!! | TAATTATATTTTGTTTGGAA+AGG | + | chr3_4:11417468-11417487 | Msa0490070:intron | 15.0% |
| !!! | TCTTAATTATATGTTTTGAT+TGG | + | chr3_4:11417567-11417586 | Msa0490070:intron | 15.0% |
| !!! | TATCTAAGAAAATTTTACAT+TGG | - | chr3_4:11417681-11417700 | None:intergenic | 15.0% |
| !!! | TTTTTACATAACTTTTTTGT+TGG | + | chr3_4:11417720-11417739 | Msa0490070:intron | 15.0% |
| !! | TGTTTATGTTATATATCATT+TGG | + | chr3_4:11417785-11417804 | Msa0490070:CDS | 15.0% |
| !! | TGTTTATGTTATATATCATT+TGG | + | chr3_4:11417785-11417804 | Msa0490070:CDS | 15.0% |
| !! | ATTTATAAACACAATTGTTA+AGG | - | chr3_4:11416767-11416786 | None:intergenic | 15.0% |
| !!! | AATGTTTATAGTACAAATTT+TGG | + | chr3_4:11416811-11416830 | Msa0490070:intron | 15.0% |
| !! | TAATAGGAAATACATATAAA+TGG | - | chr3_4:11416920-11416939 | None:intergenic | 15.0% |
| !! | TATATGTATTTCCTATTAAT+TGG | + | chr3_4:11416922-11416941 | Msa0490070:intron | 15.0% |
| !!! | TCTTATATACAAATATTTTG+TGG | + | chr3_4:11416977-11416996 | Msa0490070:intron | 15.0% |
| !! | AACTCAATGATTAAAAAAAT+TGG | + | chr3_4:11417055-11417074 | Msa0490070:intron | 15.0% |
| !!! | TAATAACTATTATTTTGGAA+AGG | + | chr3_4:11417362-11417381 | Msa0490070:intron | 15.0% |
| !!! | AATAACTATTATTTTGGAAA+GGG | + | chr3_4:11417363-11417382 | Msa0490070:intron | 15.0% |
| !!! | GACATTAATTATATTTTGTT+TGG | + | chr3_4:11417463-11417482 | Msa0490070:intron | 15.0% |
| !!! | TAATTATATTTTGTTTGGAA+AGG | + | chr3_4:11417468-11417487 | Msa0490070:intron | 15.0% |
| !!! | TCTTAATTATATGTTTTGAT+TGG | + | chr3_4:11417567-11417586 | Msa0490070:intron | 15.0% |
| !!! | TATCTAAGAAAATTTTACAT+TGG | - | chr3_4:11417681-11417700 | None:intergenic | 15.0% |
| !!! | TTTTTACATAACTTTTTTGT+TGG | + | chr3_4:11417720-11417739 | Msa0490070:intron | 15.0% |
| !! | TGTTTATGTTATATATCATT+TGG | + | chr3_4:11417785-11417804 | Msa0490070:CDS | 15.0% |
| !! | TGTTTATGTTATATATCATT+TGG | + | chr3_4:11417785-11417804 | Msa0490070:CDS | 15.0% |
| !!! | TATATACAAATATTTTGTGG+TGG | + | chr3_4:11416980-11416999 | Msa0490070:intron | 20.0% |
| !!! | ATGAGATAATTGTATTTTCT+TGG | + | chr3_4:11417084-11417103 | Msa0490070:intron | 20.0% |
| !!! | ATAACTATTATTTTGGAAAG+GGG | + | chr3_4:11417364-11417383 | Msa0490070:intron | 20.0% |
| !!! | ACTCAAATGATTTTCATATT+TGG | + | chr3_4:11417437-11417456 | Msa0490070:intron | 20.0% |
| !!! | AAATGATTTTCATATTTGGT+GGG | + | chr3_4:11417441-11417460 | Msa0490070:intron | 20.0% |
| !!! | TATATACAAATATTTTGTGG+TGG | + | chr3_4:11416980-11416999 | Msa0490070:intron | 20.0% |
| !!! | ATGAGATAATTGTATTTTCT+TGG | + | chr3_4:11417084-11417103 | Msa0490070:intron | 20.0% |
| !!! | ATAACTATTATTTTGGAAAG+GGG | + | chr3_4:11417364-11417383 | Msa0490070:intron | 20.0% |
| !!! | ACTCAAATGATTTTCATATT+TGG | + | chr3_4:11417437-11417456 | Msa0490070:intron | 20.0% |
| !!! | AAATGATTTTCATATTTGGT+GGG | + | chr3_4:11417441-11417460 | Msa0490070:intron | 20.0% |
| !!! | TTTTTCAAGCTTTTGTTTTG+CGG | + | chr3_4:11416581-11416600 | Msa0490070:intron | 25.0% |
| ! | TAAACACAATTGTTAAGGAT+AGG | - | chr3_4:11416762-11416781 | None:intergenic | 25.0% |
| !! | TAGTACAAATTTTGGATTTC+AGG | + | chr3_4:11416819-11416838 | Msa0490070:intron | 25.0% |
| ! | TGCTATAGAAACCAATTAAT+AGG | - | chr3_4:11416936-11416955 | None:intergenic | 25.0% |
| ! | AGTCAATCTCTTACTATAAT+AGG | + | chr3_4:11417015-11417034 | Msa0490070:intron | 25.0% |
| ! | GAATAAGAATTTGAAGAAGT+TGG | + | chr3_4:11417322-11417341 | Msa0490070:intron | 25.0% |
| !! | CAAATGATTTTCATATTTGG+TGG | + | chr3_4:11417440-11417459 | Msa0490070:intron | 25.0% |
| ! | AAAATGTCGATGTTCATTAT+TGG | + | chr3_4:11417869-11417888 | Msa0490070:CDS | 25.0% |
| ! | TAATGTTATTGCTTCTACTT+TGG | + | chr3_4:11417897-11417916 | Msa0490070:CDS | 25.0% |
| !! | AATCTAAAATTCTCCTTCAT+AGG | + | chr3_4:11418077-11418096 | Msa0490070:intron | 25.0% |
| !! | AGGTTTTTGCATAACTTTTT+TGG | + | chr3_4:11418097-11418116 | Msa0490070:intron | 25.0% |
| !!! | TTTTTGCATAACTTTTTTGG+TGG | + | chr3_4:11418145-11418164 | Msa0490070:intron | 25.0% |
| ! | ATACTTCCAATAATGAACAT+CGG | - | chr3_4:11417878-11417897 | None:intergenic | 25.0% |
| ! | TAATGTTATTGCTTCTACTT+TGG | + | chr3_4:11417897-11417916 | Msa0490070:CDS | 25.0% |
| !! | AAATAATGTCACCAACTTTT+AGG | - | chr3_4:11418633-11418652 | None:intergenic | 25.0% |
| !! | CAGTCAATAATCCTTTTAAT+AGG | + | chr3_4:11418659-11418678 | Msa0490070:CDS | 25.0% |
| !!! | TTTTTCAAGCTTTTGTTTTG+CGG | + | chr3_4:11416581-11416600 | Msa0490070:intron | 25.0% |
| ! | TAAACACAATTGTTAAGGAT+AGG | - | chr3_4:11416762-11416781 | None:intergenic | 25.0% |
| !! | TAGTACAAATTTTGGATTTC+AGG | + | chr3_4:11416819-11416838 | Msa0490070:intron | 25.0% |
| ! | TGCTATAGAAACCAATTAAT+AGG | - | chr3_4:11416936-11416955 | None:intergenic | 25.0% |
| ! | AGTCAATCTCTTACTATAAT+AGG | + | chr3_4:11417015-11417034 | Msa0490070:intron | 25.0% |
| ! | GAATAAGAATTTGAAGAAGT+TGG | + | chr3_4:11417322-11417341 | Msa0490070:intron | 25.0% |
| !! | CAAATGATTTTCATATTTGG+TGG | + | chr3_4:11417440-11417459 | Msa0490070:intron | 25.0% |
| ! | AAAATGTCGATGTTCATTAT+TGG | + | chr3_4:11417869-11417888 | Msa0490070:CDS | 25.0% |
| ! | TAATGTTATTGCTTCTACTT+TGG | + | chr3_4:11417897-11417916 | Msa0490070:CDS | 25.0% |
| !! | AATCTAAAATTCTCCTTCAT+AGG | + | chr3_4:11418077-11418096 | Msa0490070:intron | 25.0% |
| !! | AGGTTTTTGCATAACTTTTT+TGG | + | chr3_4:11418097-11418116 | Msa0490070:intron | 25.0% |
| !!! | TTTTTGCATAACTTTTTTGG+TGG | + | chr3_4:11418145-11418164 | Msa0490070:intron | 25.0% |
| ! | ATACTTCCAATAATGAACAT+CGG | - | chr3_4:11417878-11417897 | None:intergenic | 25.0% |
| ! | TAATGTTATTGCTTCTACTT+TGG | + | chr3_4:11417897-11417916 | Msa0490070:CDS | 25.0% |
| !! | AAATAATGTCACCAACTTTT+AGG | - | chr3_4:11418633-11418652 | None:intergenic | 25.0% |
| !! | CAGTCAATAATCCTTTTAAT+AGG | + | chr3_4:11418659-11418678 | Msa0490070:CDS | 25.0% |
| GGTTTCTTACTCAATGATTT+AGG | + | chr3_4:11416645-11416664 | Msa0490070:intron | 30.0% | |
| AGATTGACACTTATGATACA+AGG | + | chr3_4:11416671-11416690 | Msa0490070:intron | 30.0% | |
| GGAAAGAAATAGGATTTCAA+AGG | - | chr3_4:11416741-11416760 | None:intergenic | 30.0% | |
| GTTAAGGATAGGAAAGAAAT+AGG | - | chr3_4:11416751-11416770 | None:intergenic | 30.0% | |
| TACAATGCAAAATTCAAGAG+TGG | - | chr3_4:11416878-11416897 | None:intergenic | 30.0% | |
| ! | ATTGGTTTCTATAGCATAAG+AGG | + | chr3_4:11416940-11416959 | Msa0490070:intron | 30.0% |
| TTGGTTTCTATAGCATAAGA+GGG | + | chr3_4:11416941-11416960 | Msa0490070:intron | 30.0% | |
| ! | TACAAATATTTTGTGGTGGT+AGG | + | chr3_4:11416984-11417003 | Msa0490070:intron | 30.0% |
| !! | ATTTCATTTTAGTCTGACCT+AGG | + | chr3_4:11417215-11417234 | Msa0490070:intron | 30.0% |
| TAGGAAAACTAAAGAGACAA+GGG | + | chr3_4:11417234-11417253 | Msa0490070:intron | 30.0% | |
| TGGAAAGGAATATTTAGTGT+TGG | + | chr3_4:11417483-11417502 | Msa0490070:intron | 30.0% | |
| !!! | TATGTTTTGATTGGTGTGTT+TGG | + | chr3_4:11417576-11417595 | Msa0490070:intron | 30.0% |
| GATAAGTACGAAAATGTCAT+AGG | + | chr3_4:11417697-11417716 | Msa0490070:intron | 30.0% | |
| GATGAAAAAATGAATGAGAC+TGG | + | chr3_4:11417811-11417830 | Msa0490070:CDS | 30.0% | |
| ! | TTTTGAACATTCCCTAATTC+AGG | - | chr3_4:11417853-11417872 | None:intergenic | 30.0% |
| ! | TTTGGATGGAAACAATGTTT+TGG | + | chr3_4:11417915-11417934 | Msa0490070:CDS | 30.0% |
| AGTTATGCAAAAACCTATGA+AGG | - | chr3_4:11418093-11418112 | None:intergenic | 30.0% | |
| GATAAGTACGAAAATGTCAT+AGG | + | chr3_4:11417697-11417716 | Msa0490070:intron | 30.0% | |
| GAAGAAAAAATGAATGAGAC+TGG | + | chr3_4:11418237-11418256 | Msa0490070:intron | 30.0% | |
| ! | TTTTGAACATTCCCTAATTC+AGG | - | chr3_4:11417853-11417872 | None:intergenic | 30.0% |
| AAAATGCCGATGTTCATTAT+TGG | + | chr3_4:11418295-11418314 | Msa0490070:CDS | 30.0% | |
| ! | TTTGGATGGAAACAATGTTT+TGG | + | chr3_4:11417915-11417934 | Msa0490070:CDS | 30.0% |
| GTAGCATACATCCTATTAAA+AGG | - | chr3_4:11418673-11418692 | None:intergenic | 30.0% | |
| GGTTTCTTACTCAATGATTT+AGG | + | chr3_4:11416645-11416664 | Msa0490070:intron | 30.0% | |
| AGATTGACACTTATGATACA+AGG | + | chr3_4:11416671-11416690 | Msa0490070:intron | 30.0% | |
| GGAAAGAAATAGGATTTCAA+AGG | - | chr3_4:11416741-11416760 | None:intergenic | 30.0% | |
| GTTAAGGATAGGAAAGAAAT+AGG | - | chr3_4:11416751-11416770 | None:intergenic | 30.0% | |
| TACAATGCAAAATTCAAGAG+TGG | - | chr3_4:11416878-11416897 | None:intergenic | 30.0% | |
| ! | ATTGGTTTCTATAGCATAAG+AGG | + | chr3_4:11416940-11416959 | Msa0490070:intron | 30.0% |
| TTGGTTTCTATAGCATAAGA+GGG | + | chr3_4:11416941-11416960 | Msa0490070:intron | 30.0% | |
| ! | TACAAATATTTTGTGGTGGT+AGG | + | chr3_4:11416984-11417003 | Msa0490070:intron | 30.0% |
| !! | ATTTCATTTTAGTCTGACCT+AGG | + | chr3_4:11417215-11417234 | Msa0490070:intron | 30.0% |
| TAGGAAAACTAAAGAGACAA+GGG | + | chr3_4:11417234-11417253 | Msa0490070:intron | 30.0% | |
| TGGAAAGGAATATTTAGTGT+TGG | + | chr3_4:11417483-11417502 | Msa0490070:intron | 30.0% | |
| !!! | TATGTTTTGATTGGTGTGTT+TGG | + | chr3_4:11417576-11417595 | Msa0490070:intron | 30.0% |
| GATAAGTACGAAAATGTCAT+AGG | + | chr3_4:11417697-11417716 | Msa0490070:intron | 30.0% | |
| GATGAAAAAATGAATGAGAC+TGG | + | chr3_4:11417811-11417830 | Msa0490070:CDS | 30.0% | |
| ! | TTTTGAACATTCCCTAATTC+AGG | - | chr3_4:11417853-11417872 | None:intergenic | 30.0% |
| ! | TTTGGATGGAAACAATGTTT+TGG | + | chr3_4:11417915-11417934 | Msa0490070:CDS | 30.0% |
| AGTTATGCAAAAACCTATGA+AGG | - | chr3_4:11418093-11418112 | None:intergenic | 30.0% | |
| GATAAGTACGAAAATGTCAT+AGG | + | chr3_4:11417697-11417716 | Msa0490070:intron | 30.0% | |
| GAAGAAAAAATGAATGAGAC+TGG | + | chr3_4:11418237-11418256 | Msa0490070:intron | 30.0% | |
| ! | TTTTGAACATTCCCTAATTC+AGG | - | chr3_4:11417853-11417872 | None:intergenic | 30.0% |
| AAAATGCCGATGTTCATTAT+TGG | + | chr3_4:11418295-11418314 | Msa0490070:CDS | 30.0% | |
| ! | TTTGGATGGAAACAATGTTT+TGG | + | chr3_4:11417915-11417934 | Msa0490070:CDS | 30.0% |
| GTAGCATACATCCTATTAAA+AGG | - | chr3_4:11418673-11418692 | None:intergenic | 30.0% | |
| !!! | CTTGTCTCTTTAGTTTTCCT+AGG | - | chr3_4:11417235-11417254 | None:intergenic | 35.0% |
| CTAGGAAAACTAAAGAGACA+AGG | + | chr3_4:11417233-11417252 | Msa0490070:intron | 35.0% | |
| TGGGAATGATCTTATGATAG+TGG | + | chr3_4:11417269-11417288 | Msa0490070:intron | 35.0% | |
| TATTCTAACGACATGCATGA+TGG | - | chr3_4:11417307-11417326 | None:intergenic | 35.0% | |
| !! | GGAATATTTAGTGTTGGTTG+TGG | + | chr3_4:11417489-11417508 | Msa0490070:intron | 35.0% |
| GTTATTGCTTCTACTTTGGA+TGG | + | chr3_4:11417901-11417920 | Msa0490070:CDS | 35.0% | |
| GTTATTGCTTCTACTTTGGA+TGG | + | chr3_4:11417901-11417920 | Msa0490070:CDS | 35.0% | |
| TACCAGTTTCTTCGTCAAAA+AGG | - | chr3_4:11418519-11418538 | None:intergenic | 35.0% | |
| !! | TACGGCTTTGTTCTTGAAAA+GGG | + | chr3_4:11418607-11418626 | Msa0490070:CDS | 35.0% |
| !!! | CTTGTCTCTTTAGTTTTCCT+AGG | - | chr3_4:11417235-11417254 | None:intergenic | 35.0% |
| CTAGGAAAACTAAAGAGACA+AGG | + | chr3_4:11417233-11417252 | Msa0490070:intron | 35.0% | |
| TGGGAATGATCTTATGATAG+TGG | + | chr3_4:11417269-11417288 | Msa0490070:intron | 35.0% | |
| TATTCTAACGACATGCATGA+TGG | - | chr3_4:11417307-11417326 | None:intergenic | 35.0% | |
| !! | GGAATATTTAGTGTTGGTTG+TGG | + | chr3_4:11417489-11417508 | Msa0490070:intron | 35.0% |
| GTTATTGCTTCTACTTTGGA+TGG | + | chr3_4:11417901-11417920 | Msa0490070:CDS | 35.0% | |
| GTTATTGCTTCTACTTTGGA+TGG | + | chr3_4:11417901-11417920 | Msa0490070:CDS | 35.0% | |
| TACCAGTTTCTTCGTCAAAA+AGG | - | chr3_4:11418519-11418538 | None:intergenic | 35.0% | |
| !! | TACGGCTTTGTTCTTGAAAA+GGG | + | chr3_4:11418607-11418626 | Msa0490070:CDS | 35.0% |
| !!! | TTCAAGCTTTTGTTTTGCGG+TGG | + | chr3_4:11416584-11416603 | Msa0490070:intron | 40.0% |
| ACCTCTTGCTACACTATACA+TGG | + | chr3_4:11416624-11416643 | Msa0490070:intron | 40.0% | |
| ACCATGTATAGTGTAGCAAG+AGG | - | chr3_4:11416628-11416647 | None:intergenic | 40.0% | |
| TCACTTTCTCAAGCAACTCT+TGG | + | chr3_4:11416848-11416867 | Msa0490070:intron | 40.0% | |
| GAAAACTAAAGAGACAAGGG+AGG | + | chr3_4:11417237-11417256 | Msa0490070:intron | 40.0% | |
| ACTGCAAGAGGAACTATGTT+TGG | + | chr3_4:11417544-11417563 | Msa0490070:intron | 40.0% | |
| AAGTCAACGGTCCTGAATTA+GGG | + | chr3_4:11417839-11417858 | Msa0490070:CDS | 40.0% | |
| AAGTCAACGGTCCTGAATTA+GGG | + | chr3_4:11417839-11417858 | Msa0490070:CDS | 40.0% | |
| ! | CTATTGTAGCATTTTCCTCG+AGG | + | chr3_4:11418451-11418470 | Msa0490070:intron | 40.0% |
| ! | CTCCTTTTTGACGAAGAAAC+TGG | + | chr3_4:11418514-11418533 | Msa0490070:CDS | 40.0% |
| ! | AGCATGCATCAGAAGTACAT+AGG | + | chr3_4:11418574-11418593 | Msa0490070:CDS | 40.0% |
| ! | GCATGCATCAGAAGTACATA+GGG | + | chr3_4:11418575-11418594 | Msa0490070:CDS | 40.0% |
| !! | GTACGGCTTTGTTCTTGAAA+AGG | + | chr3_4:11418606-11418625 | Msa0490070:CDS | 40.0% |
| CTTGAAAAGGGCCTAAAAGT+TGG | + | chr3_4:11418619-11418638 | Msa0490070:CDS | 40.0% | |
| !!! | TTCAAGCTTTTGTTTTGCGG+TGG | + | chr3_4:11416584-11416603 | Msa0490070:intron | 40.0% |
| ACCTCTTGCTACACTATACA+TGG | + | chr3_4:11416624-11416643 | Msa0490070:intron | 40.0% | |
| ACCATGTATAGTGTAGCAAG+AGG | - | chr3_4:11416628-11416647 | None:intergenic | 40.0% | |
| TCACTTTCTCAAGCAACTCT+TGG | + | chr3_4:11416848-11416867 | Msa0490070:intron | 40.0% | |
| GAAAACTAAAGAGACAAGGG+AGG | + | chr3_4:11417237-11417256 | Msa0490070:intron | 40.0% | |
| ACTGCAAGAGGAACTATGTT+TGG | + | chr3_4:11417544-11417563 | Msa0490070:intron | 40.0% | |
| AAGTCAACGGTCCTGAATTA+GGG | + | chr3_4:11417839-11417858 | Msa0490070:CDS | 40.0% | |
| AAGTCAACGGTCCTGAATTA+GGG | + | chr3_4:11417839-11417858 | Msa0490070:CDS | 40.0% | |
| ! | CTATTGTAGCATTTTCCTCG+AGG | + | chr3_4:11418451-11418470 | Msa0490070:intron | 40.0% |
| ! | CTCCTTTTTGACGAAGAAAC+TGG | + | chr3_4:11418514-11418533 | Msa0490070:CDS | 40.0% |
| ! | AGCATGCATCAGAAGTACAT+AGG | + | chr3_4:11418574-11418593 | Msa0490070:CDS | 40.0% |
| ! | GCATGCATCAGAAGTACATA+GGG | + | chr3_4:11418575-11418594 | Msa0490070:CDS | 40.0% |
| !! | GTACGGCTTTGTTCTTGAAA+AGG | + | chr3_4:11418606-11418625 | Msa0490070:CDS | 40.0% |
| CTTGAAAAGGGCCTAAAAGT+TGG | + | chr3_4:11418619-11418638 | Msa0490070:CDS | 40.0% | |
| ACAAGGGAGGATTGTCTCAT+GGG | + | chr3_4:11417250-11417269 | Msa0490070:intron | 45.0% | |
| ACTTTGTGCAAGACTGCAAG+AGG | + | chr3_4:11417532-11417551 | Msa0490070:intron | 45.0% | |
| GAGACTGGAGTTGAAGTCAA+CGG | + | chr3_4:11417826-11417845 | Msa0490070:CDS | 45.0% | |
| GAAGTCAACGGTCCTGAATT+AGG | + | chr3_4:11417838-11417857 | Msa0490070:CDS | 45.0% | |
| CCTCGAGCAAAATGCTACAA+TGG | - | chr3_4:11418028-11418047 | None:intergenic | 45.0% | |
| ! | CCATTGTAGCATTTTGCTCG+AGG | + | chr3_4:11418025-11418044 | Msa0490070:intron | 45.0% |
| GAGACTGGAGTTGAAGTCAA+CGG | + | chr3_4:11417826-11417845 | Msa0490070:CDS | 45.0% | |
| GAAGTCAACGGTCCTGAATT+AGG | + | chr3_4:11417838-11417857 | Msa0490070:CDS | 45.0% | |
| ! | CATCAGAAGTACATAGGGAG+AGG | + | chr3_4:11418580-11418599 | Msa0490070:CDS | 45.0% |
| ! | AGAAGTACATAGGGAGAGGA+TGG | + | chr3_4:11418584-11418603 | Msa0490070:CDS | 45.0% |
| TACATAGGGAGAGGATGGTA+CGG | + | chr3_4:11418589-11418608 | Msa0490070:CDS | 45.0% | |
| ACAAGGGAGGATTGTCTCAT+GGG | + | chr3_4:11417250-11417269 | Msa0490070:intron | 45.0% | |
| ACTTTGTGCAAGACTGCAAG+AGG | + | chr3_4:11417532-11417551 | Msa0490070:intron | 45.0% | |
| GAGACTGGAGTTGAAGTCAA+CGG | + | chr3_4:11417826-11417845 | Msa0490070:CDS | 45.0% | |
| GAAGTCAACGGTCCTGAATT+AGG | + | chr3_4:11417838-11417857 | Msa0490070:CDS | 45.0% | |
| CCTCGAGCAAAATGCTACAA+TGG | - | chr3_4:11418028-11418047 | None:intergenic | 45.0% | |
| ! | CCATTGTAGCATTTTGCTCG+AGG | + | chr3_4:11418025-11418044 | Msa0490070:intron | 45.0% |
| GAGACTGGAGTTGAAGTCAA+CGG | + | chr3_4:11417826-11417845 | Msa0490070:CDS | 45.0% | |
| GAAGTCAACGGTCCTGAATT+AGG | + | chr3_4:11417838-11417857 | Msa0490070:CDS | 45.0% | |
| ! | CATCAGAAGTACATAGGGAG+AGG | + | chr3_4:11418580-11418599 | Msa0490070:CDS | 45.0% |
| ! | AGAAGTACATAGGGAGAGGA+TGG | + | chr3_4:11418584-11418603 | Msa0490070:CDS | 45.0% |
| TACATAGGGAGAGGATGGTA+CGG | + | chr3_4:11418589-11418608 | Msa0490070:CDS | 45.0% | |
| GACAAGGGAGGATTGTCTCA+TGG | + | chr3_4:11417249-11417268 | Msa0490070:intron | 50.0% | |
| ACATTCTCAGCAACACCTCG+AGG | - | chr3_4:11418043-11418062 | None:intergenic | 50.0% | |
| GACAAGGGAGGATTGTCTCA+TGG | + | chr3_4:11417249-11417268 | Msa0490070:intron | 50.0% | |
| ACATTCTCAGCAACACCTCG+AGG | - | chr3_4:11418043-11418062 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11416574 | 11418705 | 11416574 | ID=Msa0490070;Name=Msa0490070 |
| chr3_4 | mRNA | 11416574 | 11418705 | 11416574 | ID=Msa0490070-mRNA-1;Parent=Msa0490070;Name=Msa0490070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|0.5|0.6|5|0|184 |
| chr3_4 | exon | 11416574 | 11416579 | 11416574 | ID=Msa0490070-mRNA-1:exon:3543;Parent=Msa0490070-mRNA-1 |
| chr3_4 | exon | 11417769 | 11417936 | 11417769 | ID=Msa0490070-mRNA-1:exon:3544;Parent=Msa0490070-mRNA-1 |
| chr3_4 | exon | 11418034 | 11418046 | 11418034 | ID=Msa0490070-mRNA-1:exon:3545;Parent=Msa0490070-mRNA-1 |
| chr3_4 | exon | 11418241 | 11418362 | 11418241 | ID=Msa0490070-mRNA-1:exon:3546;Parent=Msa0490070-mRNA-1 |
| chr3_4 | exon | 11418460 | 11418705 | 11418460 | ID=Msa0490070-mRNA-1:exon:3547;Parent=Msa0490070-mRNA-1 |
| chr3_4 | CDS | 11416574 | 11416579 | 11416574 | ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1 |
| chr3_4 | CDS | 11417769 | 11417936 | 11417769 | ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1 |
| chr3_4 | CDS | 11418034 | 11418046 | 11418034 | ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1 |
| chr3_4 | CDS | 11418241 | 11418362 | 11418241 | ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1 |
| chr3_4 | CDS | 11418460 | 11418705 | 11418460 | ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
