AlfalfaGEDB | Msa0490070

M. sativa cultivar zhongmu-4 / Msa0490070

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490070	XP_039687084.1	82.500	120	21	0	65	184	1	120	1.69e-64	204

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490070	G7INX6	82.500	120	21	0	65	184	1	120	8.07e-65	204

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TFs/TRs:

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Gene ID	Type	Classification
Msa0490070	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490070	MtrunA17_Chr2g0281511	82.500	120	21	0	65	184	1	120	1.55e-68	204
Msa0490070	MtrunA17_Chr2g0309121	80.833	120	22	1	65	184	1	119	9.59e-66	197
Msa0490070	MtrunA17_Chr3g0081891	80.000	80	16	0	65	144	1	80	2.88e-41	134
Msa0490070	MtrunA17_Chr7g0276661	33.588	131	67	4	71	183	38	166	1.88e-17	75.9
Msa0490070	MtrunA17_Chr0c01g0489371	36.290	124	75	2	53	174	193	314	1.26e-15	73.2
Msa0490070	MtrunA17_Chr8g0356961	39.362	94	55	1	83	174	72	165	9.94e-15	68.6
Msa0490070	MtrunA17_Chr8g0372431	27.835	97	70	0	88	184	6	102	4.09e-14	65.1
Msa0490070	MtrunA17_Chr5g0430431	35.955	89	47	1	101	179	165	253	1.26e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 28 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCGATGTTCATTAT+TGG	0.252563	3_4:+11418295	Msa0490070:CDS
AAAATGTCGATGTTCATTAT+TGG	0.262235	3_4:+11417869	Msa0490070:CDS
AAGTCAACGGTCCTGAATTA+GGG	0.429565	3_4:+11417839	Msa0490070:CDS
AAGTCAACGGTCCTGAATTA+GGG	0.429565	3_4:+11418265	Msa0490070:CDS
ACATTCTCAGCAACACCTCG+AGG	0.684927	3_4:-11418466	None:intergenic
AGAAGTACATAGGGAGAGGA+TGG	0.580923	3_4:+11418584	Msa0490070:CDS
AGCATGCATCAGAAGTACAT+AGG	0.546367	3_4:+11418574	Msa0490070:CDS
ATACTTCCAATAATGAACAT+CGG	0.656056	3_4:-11418301	None:intergenic
CATCAGAAGTACATAGGGAG+AGG	0.578101	3_4:+11418580	Msa0490070:CDS
CTTGAAAAGGGCCTAAAAGT+TGG	0.503487	3_4:+11418619	Msa0490070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTTCTTACTCAATGATTT+AGG	+	chr3_4:11416645-11416664	Msa0490070:intron	30.0%
AGATTGACACTTATGATACA+AGG	+	chr3_4:11416671-11416690	Msa0490070:intron	30.0%
GGAAAGAAATAGGATTTCAA+AGG	-	chr3_4:11416741-11416760	None:intergenic	30.0%
GTTAAGGATAGGAAAGAAAT+AGG	-	chr3_4:11416751-11416770	None:intergenic	30.0%
TACAATGCAAAATTCAAGAG+TGG	-	chr3_4:11416878-11416897	None:intergenic	30.0%
TTGGTTTCTATAGCATAAGA+GGG	+	chr3_4:11416941-11416960	Msa0490070:intron	30.0%
TAGGAAAACTAAAGAGACAA+GGG	+	chr3_4:11417234-11417253	Msa0490070:intron	30.0%
TGGAAAGGAATATTTAGTGT+TGG	+	chr3_4:11417483-11417502	Msa0490070:intron	30.0%
GATAAGTACGAAAATGTCAT+AGG	+	chr3_4:11417697-11417716	Msa0490070:intron	30.0%
GATGAAAAAATGAATGAGAC+TGG	+	chr3_4:11417811-11417830	Msa0490070:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	11416574	11418705	11416574	ID=Msa0490070;Name=Msa0490070
chr3_4	mRNA	11416574	11418705	11416574	ID=Msa0490070-mRNA-1;Parent=Msa0490070;Name=Msa0490070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|0.8\|0.5\|0.6\|5\|0\|184
chr3_4	exon	11416574	11416579	11416574	ID=Msa0490070-mRNA-1:exon:3543;Parent=Msa0490070-mRNA-1
chr3_4	exon	11417769	11417936	11417769	ID=Msa0490070-mRNA-1:exon:3544;Parent=Msa0490070-mRNA-1
chr3_4	exon	11418034	11418046	11418034	ID=Msa0490070-mRNA-1:exon:3545;Parent=Msa0490070-mRNA-1
chr3_4	exon	11418241	11418362	11418241	ID=Msa0490070-mRNA-1:exon:3546;Parent=Msa0490070-mRNA-1
chr3_4	exon	11418460	11418705	11418460	ID=Msa0490070-mRNA-1:exon:3547;Parent=Msa0490070-mRNA-1
chr3_4	CDS	11416574	11416579	11416574	ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1
chr3_4	CDS	11417769	11417936	11417769	ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1
chr3_4	CDS	11418034	11418046	11418034	ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1
chr3_4	CDS	11418241	11418362	11418241	ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1
chr3_4	CDS	11418460	11418705	11418460	ID=Msa0490070-mRNA-1:cds;Parent=Msa0490070-mRNA-1

Gene Sequence

>Msa0490070

ATGGTTAAAAGTATGATTTATTTGTTTATGTTATATATCATTTGGATTGATGAAAAAATGAATGAGACTGGAGTTGAAGTCAACGGTCCTGAATTAGGGAATGTTCAAAATGTCGATGTTCATTATTGGAAGTATAATGTTATTGCTTCTACTTTGGATGGAAACAATGTTTTGCATTTTGCTCGAGAAAAAATGAATGAGACTGGAGTTGAAGTCAACGGTCCTGAATTAGGGAATGTTCAAAATGCCGATGTTCATTATTGGAAGTATAATGTTATTGCTTCTACTTTGGATGGAAACAATGTTTTGCATTTTCCTCGAGGTGTTGCTGAGAATGTTTTGTATATCAATCAATCTAAAATTCTCCTTTTTGACGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACATTGCGCAAAGAAGCATGCATCAGAAGTACATAGGGAGAGGATGGTACGGCTTTGTTCTTGAAAAGGGCCTAAAAGTTGGTGACATTATTTTGTTCACAGTCAATAATCCTTTTAATAGGATGTATGCTACCGTCGTTAACTGA

Protein sequence

>Msa0490070

MVKSMIYLFMLYIIWIDEKMNETGVEVNGPELGNVQNVDVHYWKYNVIASTLDGNNVLHFAREKMNETGVEVNGPELGNVQNADVHYWKYNVIASTLDGNNVLHFPRGVAENVLYINQSKILLFDEETGKSYDCDVHIAQRSMHQKYIGRGWYGFVLEKGLKVGDIILFTVNNPFNRMYATVVN*