AlfalfaGEDB | Msa0490290

M. sativa cultivar zhongmu-4 / Msa0490290

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490290	XP_013458889.2	92.268	194	10	3	5	198	267	455	9.36e-120	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490290	sp\|Q9CAL8\|PEK13_ARATH	47.101	138	61	5	16	146	507	639	3.72e-26	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490290	A0A396IIW6	92.268	194	10	3	5	198	267	455	4.47e-120	358

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490290	MtrunA17_Chr3g0080901	92.268	194	10	3	5	198	267	455	8.61e-124	358
Msa0490290	MtrunA17_Chr3g0080881	55.215	163	67	3	5	165	213	371	1.09e-49	165
Msa0490290	MtrunA17_Chr3g0093601	53.211	109	46	2	26	134	268	371	3.03e-32	119
Msa0490290	MtrunA17_Chr3g0093611	44.068	118	63	1	18	135	227	341	2.83e-28	108
Msa0490290	MtrunA17_Chr8g0354651	68.571	70	22	0	5	74	251	320	2.81e-26	103
Msa0490290	MtrunA17_Chr4g0064201	46.875	128	63	3	14	138	272	397	7.90e-26	103
Msa0490290	MtrunA17_Chr8g0341881	42.500	120	64	2	14	131	559	675	1.98e-24	100
Msa0490290	MtrunA17_Chr4g0069061	41.606	137	76	2	14	148	71	205	2.21e-24	95.1
Msa0490290	MtrunA17_Chr8g0362661	40.426	188	98	8	14	193	296	477	3.01e-24	99.0
Msa0490290	MtrunA17_Chr3g0093591	47.573	103	51	1	25	127	294	393	1.41e-23	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0490290	AT1G70450.1	46.715	137	61	5	16	145	204	335	3.21e-27	106
Msa0490290	AT1G70460.1	47.101	138	61	5	16	146	507	639	3.78e-27	108
Msa0490290	AT1G23540.1	37.931	203	73	8	16	174	525	718	4.06e-25	102
Msa0490290	AT2G05940.1	43.885	139	71	4	14	148	246	381	4.40e-24	98.6
Msa0490290	AT5G15080.1	46.721	122	60	3	16	134	306	425	1.89e-23	97.1
Msa0490290	AT5G56790.1	41.739	115	62	2	19	131	549	660	3.80e-23	96.7
Msa0490290	AT5G38560.1	43.704	135	60	5	16	137	495	626	4.16e-23	96.7
Msa0490290	AT2G26290.1	47.200	125	59	4	16	136	249	370	8.50e-23	94.7
Msa0490290	AT1G10620.1	45.833	120	56	3	18	131	527	643	1.75e-22	94.7
Msa0490290	AT3G13690.2	41.935	124	65	3	19	138	570	690	3.21e-22	94.0

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Find 41 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACATGTGACATTGGAAC+AGG	0.469010	3_4:-11759610	Msa0490290:CDS
AACCGAAGTTGTTGGTACCT+GGG	0.521197	3_4:-11760912	Msa0490290:CDS
AATTATTAGATTGGAGATTT+TGG	0.159482	3_4:-11760970	Msa0490290:intron
AATTCACTTTGCTCATCAAA+GGG	0.482628	3_4:+11759514	None:intergenic
ACACACTCAACCGAAGTTGT+TGG	0.456194	3_4:-11760920	Msa0490290:CDS
ACAGGTTGTTAATGCTTTGA+CGG	0.448898	3_4:-11759647	Msa0490290:intron
ACCGAAGTTGTTGGTACCTG+GGG	0.594804	3_4:-11760911	Msa0490290:CDS
ACTACAGACAAAAGACTTGG+AGG	0.523358	3_4:-11760788	Msa0490290:CDS
AGAACAGATGTATATTCTTT+TGG	0.239908	3_4:-11760845	Msa0490290:CDS
AGAACTACAGACAAAAGACT+TGG	0.573617	3_4:-11760791	Msa0490290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAACATGTTTATGAGTT+TGG	-	chr3_4:11759553-11759572	Msa0490290:CDS	30.0%
ACATGTTTATGAGTTTGGTT+TGG	-	chr3_4:11759558-11759577	Msa0490290:CDS	30.0%
ATAAAATGTGCAAGTGGATA+TGG	+	chr3_4:11759795-11759814	None:intergenic	30.0%
AAGAAGATAAAATGTGCAAG+TGG	+	chr3_4:11759801-11759820	None:intergenic	30.0%
AATGTTAACTAGTGTTCTCA+GGG	+	chr3_4:11760075-11760094	None:intergenic	30.0%
AAATGTTAACTAGTGTTCTC+AGG	+	chr3_4:11760076-11760095	None:intergenic	30.0%
ATCCAAAAATTTCGACTAGT+GGG	+	chr3_4:11760615-11760634	None:intergenic	30.0%
TTTCCATGTAATAGGGAATT+GGG	-	chr3_4:11760754-11760773	Msa0490290:intron	30.0%
CAAACAACAACTCTAATACA+AGG	-	chr3_4:11761126-11761145	Msa0490290:intron	30.0%
CAATATCACTCATAAATACG+CGG	+	chr3_4:11761316-11761335	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	11759450	11767237	11759450	ID=Msa0490290;Name=Msa0490290
chr3_4	mRNA	11759450	11767237	11759450	ID=Msa0490290-mRNA-1;Parent=Msa0490290;Name=Msa0490290-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0\|0\|0\|0.2\|0.25\|0.4\|5\|0\|198
chr3_4	exon	11767234	11767237	11767234	ID=Msa0490290-mRNA-1:exon:3632;Parent=Msa0490290-mRNA-1
chr3_4	exon	11760769	11760983	11760769	ID=Msa0490290-mRNA-1:exon:3631;Parent=Msa0490290-mRNA-1
chr3_4	exon	11760706	11760714	11760706	ID=Msa0490290-mRNA-1:exon:3630;Parent=Msa0490290-mRNA-1
chr3_4	exon	11760449	11760598	11760449	ID=Msa0490290-mRNA-1:exon:3629;Parent=Msa0490290-mRNA-1
chr3_4	exon	11759450	11759665	11759450	ID=Msa0490290-mRNA-1:exon:3628;Parent=Msa0490290-mRNA-1
chr3_4	CDS	11767234	11767237	11767234	ID=Msa0490290-mRNA-1:cds;Parent=Msa0490290-mRNA-1
chr3_4	CDS	11760769	11760983	11760769	ID=Msa0490290-mRNA-1:cds;Parent=Msa0490290-mRNA-1
chr3_4	CDS	11760706	11760714	11760706	ID=Msa0490290-mRNA-1:cds;Parent=Msa0490290-mRNA-1
chr3_4	CDS	11760449	11760598	11760449	ID=Msa0490290-mRNA-1:cds;Parent=Msa0490290-mRNA-1
chr3_4	CDS	11759450	11759665	11759450	ID=Msa0490290-mRNA-1:cds;Parent=Msa0490290-mRNA-1

Gene Sequence

>Msa0490290

ATGAATTGGAGATTTTGGACTAGCACGAACTCACACAAAGACTTGACACACTCAACCGAAGTTGTTGGTACCTGGGGCTATTTAGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTGGTCTTATTACAGCTTATCACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGCCTTGTTGGATGGGCGTGTCCGGCAAGGCCACTTTTAAGAGAGAGAAATTATCCAGATCTAATCGATGAAAGGATCATTGATACTCATGATTACCATCAATTATTTTGGATGATACGATTAGCTGAGAAATGTCTAAGCAGGGACCCTAAGAAAAGACTAAGTATGGTTGCGGTTGTTAATGCTTTGACGGACATATCGGAAGGAAACACATGTGACATTGGAACAGGAGATTACTCCCCAGCAAGATCAGATTCATCCTATAGCGAATCAGAATTTGATGAAAATGAAGATGAGAATGGACCCTTTGATGAGCAAAGTGAATTACTAAGCACTATTTCAGAATCCACAGAAAGCAATGAATACATAAGTCAGATGAGGCATATGACT

Protein sequence

>Msa0490290

MNWRFWTSTNSHKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWACPARPLLRERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSRDPKKRLSMVAVVNALTDISEGNTCDIGTGDYSPARSDSSYSESEFDENEDENGPFDEQSELLSTISESTESNEYISQMRHMT