Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490810 | XP_039685680.1 | 86.508 | 126 | 16 | 1 | 645 | 769 | 675 | 800 | 8.22e-52 | 206 |
| Msa0490810 | XP_039685680.1 | 90.468 | 598 | 42 | 1 | 65 | 647 | 1 | 598 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490810 | sp|Q9SZL8|FRS5_ARATH | 27.673 | 477 | 304 | 11 | 99 | 564 | 72 | 518 | 2.61e-54 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490810 | D3YBB9 | 75.000 | 148 | 36 | 1 | 645 | 791 | 704 | 851 | 1.19e-53 | 211 |
| Msa0490810 | D3YBB9 | 78.716 | 592 | 117 | 2 | 60 | 646 | 47 | 634 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0490810 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490810 | MtrunA17_Chr2g0324011 | 31.076 | 502 | 317 | 8 | 101 | 597 | 8 | 485 | 3.35e-84 | 280 |
| Msa0490810 | MtrunA17_Chr3g0082121 | 34.025 | 482 | 285 | 8 | 106 | 585 | 49 | 499 | 1.64e-83 | 280 |
| Msa0490810 | MtrunA17_Chr3g0088371 | 80.537 | 149 | 29 | 0 | 645 | 793 | 42 | 190 | 2.02e-73 | 237 |
| Msa0490810 | MtrunA17_Chr1g0172971 | 89.744 | 117 | 12 | 0 | 65 | 181 | 1 | 117 | 3.23e-62 | 219 |
| Msa0490810 | MtrunA17_Chr1g0202341 | 29.747 | 474 | 297 | 10 | 99 | 565 | 50 | 494 | 3.85e-62 | 221 |
| Msa0490810 | MtrunA17_Chr8g0363841 | 28.963 | 511 | 326 | 11 | 105 | 612 | 22 | 498 | 1.16e-60 | 217 |
| Msa0490810 | MtrunA17_Chr1g0164591 | 34.688 | 320 | 194 | 4 | 196 | 513 | 1 | 307 | 1.82e-60 | 207 |
| Msa0490810 | MtrunA17_Chr2g0296781 | 29.724 | 471 | 284 | 11 | 104 | 564 | 1 | 434 | 3.26e-58 | 211 |
| Msa0490810 | MtrunA17_Chr1g0203721 | 26.786 | 560 | 340 | 14 | 71 | 599 | 22 | 542 | 6.54e-57 | 209 |
| Msa0490810 | MtrunA17_Chr5g0448761 | 27.926 | 487 | 316 | 11 | 89 | 564 | 47 | 509 | 2.36e-55 | 204 |
| Msa0490810 | MtrunA17_Chr6g0458391 | 27.017 | 533 | 327 | 13 | 103 | 625 | 228 | 708 | 1.08e-53 | 199 |
| Msa0490810 | MtrunA17_Chr7g0258861 | 34.295 | 312 | 181 | 6 | 95 | 401 | 2 | 294 | 2.43e-51 | 182 |
| Msa0490810 | MtrunA17_Chr2g0287651 | 27.097 | 465 | 307 | 8 | 104 | 564 | 79 | 515 | 6.80e-51 | 192 |
| Msa0490810 | MtrunA17_Chr6g0477261 | 32.000 | 325 | 208 | 4 | 245 | 564 | 7 | 323 | 2.04e-50 | 188 |
| Msa0490810 | MtrunA17_Chr5g0441581 | 25.651 | 538 | 347 | 12 | 65 | 595 | 1 | 492 | 3.87e-50 | 187 |
| Msa0490810 | MtrunA17_Chr1g0196541 | 26.509 | 464 | 308 | 9 | 104 | 564 | 1 | 434 | 8.11e-46 | 175 |
| Msa0490810 | MtrunA17_Chr6g0475591 | 94.521 | 73 | 4 | 0 | 253 | 325 | 1 | 73 | 3.90e-42 | 147 |
| Msa0490810 | MtrunA17_Chr1g0203051 | 24.169 | 451 | 312 | 6 | 115 | 563 | 94 | 516 | 1.37e-41 | 161 |
| Msa0490810 | MtrunA17_Chr1g0198761 | 25.862 | 522 | 341 | 13 | 101 | 605 | 48 | 540 | 1.87e-41 | 162 |
| Msa0490810 | MtrunA17_Chr2g0329031 | 25.926 | 486 | 310 | 13 | 82 | 561 | 3 | 444 | 3.20e-40 | 159 |
| Msa0490810 | MtrunA17_Chr2g0291591 | 25.895 | 475 | 301 | 13 | 102 | 564 | 66 | 501 | 7.65e-39 | 152 |
| Msa0490810 | MtrunA17_Chr5g0440451 | 23.451 | 597 | 375 | 17 | 72 | 641 | 21 | 562 | 1.84e-38 | 154 |
| Msa0490810 | MtrunA17_Chr2g0276841 | 27.088 | 443 | 289 | 12 | 114 | 547 | 84 | 501 | 2.11e-37 | 149 |
| Msa0490810 | MtrunA17_Chr5g0431001 | 27.093 | 454 | 280 | 15 | 105 | 538 | 66 | 488 | 2.99e-36 | 144 |
| Msa0490810 | MtrunA17_Chr3g0118611 | 28.324 | 346 | 235 | 6 | 299 | 641 | 124 | 459 | 6.81e-36 | 145 |
| Msa0490810 | MtrunA17_Chr1g0207551 | 25.490 | 459 | 314 | 9 | 103 | 559 | 37 | 469 | 1.61e-35 | 144 |
| Msa0490810 | MtrunA17_Chr2g0291581 | 25.558 | 493 | 319 | 10 | 63 | 549 | 33 | 483 | 3.05e-35 | 143 |
| Msa0490810 | MtrunA17_Chr2g0290391 | 24.535 | 538 | 358 | 14 | 103 | 624 | 54 | 559 | 1.34e-34 | 141 |
| Msa0490810 | MtrunA17_Chr3g0080351 | 25.055 | 455 | 305 | 9 | 96 | 548 | 72 | 492 | 4.92e-33 | 137 |
| Msa0490810 | MtrunA17_Chr2g0287061 | 25.163 | 461 | 276 | 13 | 106 | 563 | 189 | 583 | 2.93e-31 | 131 |
| Msa0490810 | MtrunA17_Chr5g0448511 | 26.829 | 287 | 201 | 5 | 281 | 564 | 1 | 281 | 5.32e-31 | 128 |
| Msa0490810 | MtrunA17_Chr2g0294841 | 25.825 | 515 | 325 | 14 | 50 | 547 | 5 | 479 | 6.35e-31 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490810 | AT4G38180.1 | 27.673 | 477 | 304 | 11 | 99 | 564 | 72 | 518 | 2.65e-55 | 204 |
| Msa0490810 | AT3G06250.2 | 24.895 | 478 | 289 | 9 | 88 | 563 | 178 | 587 | 2.35e-39 | 156 |
| Msa0490810 | AT3G06250.1 | 24.895 | 478 | 289 | 9 | 88 | 563 | 178 | 587 | 2.35e-39 | 156 |
| Msa0490810 | AT3G06250.3 | 24.895 | 478 | 289 | 9 | 88 | 563 | 178 | 587 | 2.35e-39 | 156 |
| Msa0490810 | AT4G15090.1 | 25.486 | 463 | 314 | 9 | 115 | 572 | 66 | 502 | 1.76e-36 | 148 |
| Msa0490810 | AT4G15090.5 | 25.486 | 463 | 314 | 9 | 115 | 572 | 66 | 502 | 1.76e-36 | 148 |
| Msa0490810 | AT4G15090.3 | 25.486 | 463 | 314 | 9 | 115 | 572 | 66 | 502 | 1.76e-36 | 148 |
| Msa0490810 | AT4G15090.2 | 25.486 | 463 | 314 | 9 | 115 | 572 | 66 | 502 | 1.76e-36 | 148 |
| Msa0490810 | AT4G15090.4 | 25.486 | 463 | 314 | 9 | 115 | 572 | 66 | 502 | 1.76e-36 | 148 |
| Msa0490810 | AT3G22170.2 | 23.759 | 564 | 378 | 14 | 34 | 588 | 6 | 526 | 6.01e-36 | 146 |
| Msa0490810 | AT3G22170.1 | 23.759 | 564 | 378 | 14 | 34 | 588 | 6 | 526 | 6.01e-36 | 146 |
| Msa0490810 | AT1G76320.3 | 25.000 | 464 | 306 | 11 | 104 | 561 | 1 | 428 | 2.81e-35 | 143 |
| Msa0490810 | AT1G76320.1 | 25.000 | 464 | 306 | 11 | 104 | 561 | 1 | 428 | 5.66e-35 | 142 |
| Msa0490810 | AT1G76320.4 | 25.000 | 464 | 306 | 11 | 104 | 561 | 1 | 428 | 5.66e-35 | 142 |
| Msa0490810 | AT1G76320.2 | 25.000 | 464 | 306 | 11 | 104 | 561 | 1 | 428 | 6.13e-35 | 142 |
| Msa0490810 | AT4G38170.1 | 26.712 | 292 | 202 | 5 | 300 | 588 | 24 | 306 | 1.15e-33 | 137 |
| Msa0490810 | AT5G18960.2 | 24.224 | 483 | 293 | 12 | 86 | 563 | 197 | 611 | 2.24e-33 | 138 |
| Msa0490810 | AT5G18960.1 | 24.224 | 483 | 293 | 12 | 86 | 563 | 197 | 611 | 2.24e-33 | 138 |
| Msa0490810 | AT1G10240.2 | 24.145 | 497 | 342 | 14 | 114 | 601 | 62 | 532 | 3.86e-33 | 137 |
| Msa0490810 | AT1G10240.1 | 24.145 | 497 | 342 | 14 | 114 | 601 | 62 | 532 | 3.86e-33 | 137 |
| Msa0490810 | AT5G28530.1 | 25.225 | 444 | 282 | 12 | 105 | 527 | 60 | 474 | 2.47e-32 | 134 |
| Msa0490810 | AT5G28530.3 | 25.225 | 444 | 282 | 12 | 105 | 527 | 60 | 474 | 2.69e-32 | 134 |
| Msa0490810 | AT5G28530.2 | 25.225 | 444 | 282 | 12 | 105 | 527 | 60 | 474 | 2.69e-32 | 134 |
| Msa0490810 | AT2G27110.2 | 25.496 | 353 | 239 | 6 | 216 | 564 | 131 | 463 | 3.69e-32 | 134 |
| Msa0490810 | AT2G27110.1 | 25.496 | 353 | 239 | 6 | 216 | 564 | 131 | 463 | 3.69e-32 | 134 |
| Msa0490810 | AT2G27110.3 | 26.298 | 289 | 205 | 3 | 278 | 564 | 36 | 318 | 4.19e-32 | 134 |
| Msa0490810 | AT1G80010.1 | 25.427 | 468 | 270 | 16 | 106 | 543 | 101 | 519 | 2.54e-29 | 125 |
| Msa0490810 | AT2G32250.5 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 3.94e-28 | 121 |
| Msa0490810 | AT2G32250.2 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 7.59e-28 | 120 |
| Msa0490810 | AT2G32250.4 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 7.59e-28 | 120 |
| Msa0490810 | AT2G32250.6 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 8.47e-28 | 120 |
| Msa0490810 | AT2G32250.1 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 8.47e-28 | 120 |
| Msa0490810 | AT2G32250.3 | 23.293 | 498 | 306 | 12 | 68 | 560 | 8 | 434 | 8.47e-28 | 120 |
| Msa0490810 | AT1G52520.1 | 23.894 | 452 | 299 | 11 | 103 | 549 | 88 | 499 | 8.62e-28 | 120 |
| Msa0490810 | AT2G32250.7 | 23.696 | 460 | 277 | 11 | 106 | 560 | 3 | 393 | 1.89e-27 | 119 |
| Msa0490810 | AT2G32250.8 | 23.696 | 460 | 277 | 11 | 106 | 560 | 3 | 393 | 1.98e-27 | 119 |
| Msa0490810 | AT4G19990.3 | 23.094 | 446 | 294 | 10 | 106 | 548 | 27 | 426 | 4.46e-26 | 115 |
| Msa0490810 | AT4G19990.4 | 23.094 | 446 | 294 | 10 | 106 | 548 | 27 | 426 | 4.46e-26 | 115 |
| Msa0490810 | AT4G19990.7 | 23.094 | 446 | 294 | 10 | 106 | 548 | 41 | 440 | 5.43e-26 | 114 |
| Msa0490810 | AT4G19990.5 | 23.094 | 446 | 294 | 10 | 106 | 548 | 27 | 426 | 5.93e-26 | 114 |
| Msa0490810 | AT4G19990.6 | 23.094 | 446 | 294 | 10 | 106 | 548 | 27 | 426 | 8.10e-26 | 114 |
| Msa0490810 | AT4G19990.2 | 23.094 | 446 | 294 | 10 | 106 | 548 | 27 | 426 | 8.10e-26 | 114 |
| Msa0490810 | AT4G19990.1 | 27.239 | 268 | 188 | 4 | 284 | 548 | 106 | 369 | 1.33e-25 | 113 |
| Msa0490810 | AT5G28530.4 | 21.889 | 434 | 246 | 15 | 105 | 527 | 60 | 411 | 8.32e-14 | 75.5 |
| Msa0490810 | AT5G28530.5 | 21.889 | 434 | 246 | 15 | 105 | 527 | 60 | 411 | 8.63e-14 | 75.5 |
Find 108 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 3_4:-12507125 | None:intergenic |
| TTTCTATGAGTTAACTAATT+TGG | 0.154279 | 3_4:+12505981 | Msa0490810:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_4:+12506248 | Msa0490810:CDS |
| GGCAGAAATTCCTTATAAAT+TGG | 0.196838 | 3_4:+12507177 | Msa0490810:CDS |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3_4:-12505827 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 3_4:+12505700 | Msa0490810:intron |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 3_4:-12507119 | None:intergenic |
| GCATAAGATTTCCGTAAGTT+TGG | 0.288708 | 3_4:-12506104 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.294129 | 3_4:+12506954 | Msa0490810:CDS |
| TCTGATGTTGGCCTGTTGTT+AGG | 0.302249 | 3_4:-12504518 | None:intergenic |
| TTTGTTTATTCCAATTTATA+AGG | 0.328208 | 3_4:-12507187 | None:intergenic |
| ACAAAATAAGAAATCAAATA+AGG | 0.334199 | 3_4:+12504436 | Msa0490810:CDS |
| AATCAGATTTCGATTACAAT+TGG | 0.338214 | 3_4:+12506022 | Msa0490810:CDS |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3_4:-12505713 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 3_4:+12506073 | Msa0490810:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.376102 | 3_4:+12506122 | Msa0490810:CDS |
| TGTTCTTGAAGCTGGGAAAA+AGG | 0.376732 | 3_4:+12506962 | Msa0490810:CDS |
| TCATGTTGAGTTGGACTTCA+AGG | 0.388563 | 3_4:+12506290 | Msa0490810:CDS |
| TTCCATGATTCTTTATTACT+AGG | 0.389886 | 3_4:-12504308 | None:intergenic |
| GCCGATATTGATTGTTTGTT+CGG | 0.392943 | 3_4:-12505075 | None:intergenic |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_4:+12504784 | Msa0490810:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_4:-12507101 | None:intergenic |
| TTCTTTGAACTTTGGTGCAG+TGG | 0.413039 | 3_4:-12507093 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.414157 | 3_4:+12506422 | Msa0490810:CDS |
| TTATGCATTGGTCTTCAGCT+TGG | 0.417102 | 3_4:+12506121 | Msa0490810:CDS |
| GAAGAGTTGCTTCTTTCTAA+AGG | 0.422174 | 3_4:+12506987 | Msa0490810:CDS |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 3_4:+12504639 | Msa0490810:CDS |
| AGGTGGCTTGTCCAAACTTA+CGG | 0.423981 | 3_4:+12506093 | Msa0490810:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3_4:+12504797 | Msa0490810:CDS |
| AACAATCAATATCGGCCATT+AGG | 0.428800 | 3_4:+12505082 | Msa0490810:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_4:+12504722 | Msa0490810:CDS |
| TCCATGATTCTTTATTACTA+GGG | 0.436638 | 3_4:-12504307 | None:intergenic |
| ACCGAACAAACAATCAATAT+CGG | 0.440661 | 3_4:+12505074 | Msa0490810:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_4:+12504587 | Msa0490810:CDS |
| ATCAGATTTCGATTACAATT+GGG | 0.451002 | 3_4:+12506023 | Msa0490810:CDS |
| ATATTGATTGTTTGTTCGGT+AGG | 0.460801 | 3_4:-12505071 | None:intergenic |
| AACCACATCAGTTGACTGTT+GGG | 0.461762 | 3_4:-12506342 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_4:+12504785 | Msa0490810:CDS |
| GTCTGCTTAATCCTAACAAC+AGG | 0.466827 | 3_4:+12504507 | Msa0490810:CDS |
| TCTAATGACGATTCGTCAAA+AGG | 0.472809 | 3_4:+12504865 | Msa0490810:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 3_4:+12506388 | Msa0490810:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_4:-12504836 | None:intergenic |
| TCGACGGTGTTCTTGAAGCT+GGG | 0.483876 | 3_4:+12506955 | Msa0490810:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_4:-12506424 | None:intergenic |
| TTACTTCTCGAAATGATCTC+AGG | 0.488412 | 3_4:-12504709 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_4:+12506438 | Msa0490810:CDS |
| GTCTTCAGTGCCAACATTGA+TGG | 0.493704 | 3_4:-12506838 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_4:+12506262 | Msa0490810:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 3_4:-12504692 | None:intergenic |
| CCCCTAGTAATAAAGAATCA+TGG | 0.497629 | 3_4:+12504306 | Msa0490810:CDS |
| TTAGATGGCGTCATGGAAGA+TGG | 0.499307 | 3_4:-12507023 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3_4:-12504970 | None:intergenic |
| ATCACATCGGAGCGCGAGCA+AGG | 0.504097 | 3_4:-12503837 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_4:-12504581 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.507173 | 3_4:+12504470 | Msa0490810:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_4:+12504481 | Msa0490810:CDS |
| GCTATCGATGAACCATCTGC+TGG | 0.513087 | 3_4:+12507062 | Msa0490810:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 3_4:-12504680 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_4:-12506230 | None:intergenic |
| GAACCACATCAGTTGACTGT+TGG | 0.519655 | 3_4:-12506343 | None:intergenic |
| CTTACGGAAATCTTATGCAT+TGG | 0.523146 | 3_4:+12506109 | Msa0490810:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_4:+12504374 | Msa0490810:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 3_4:+12504640 | Msa0490810:CDS |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 3_4:-12504545 | None:intergenic |
| GAGGGATAATCATGTTGAGT+TGG | 0.532757 | 3_4:+12506281 | Msa0490810:CDS |
| CTATCGATGAACCATCTGCT+GGG | 0.534064 | 3_4:+12507063 | Msa0490810:CDS |
| AATTCAACAACGCACTAGCC+TGG | 0.534735 | 3_4:-12505858 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 3_4:+12506076 | Msa0490810:CDS |
| AAATGCAGTACGAATGTCGC+TGG | 0.539104 | 3_4:-12503864 | None:intergenic |
| TGGGCTTTGCTCATGGCACA+TGG | 0.540761 | 3_4:+12505912 | Msa0490810:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_4:-12506225 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_4:+12506439 | Msa0490810:CDS |
| TGCATCCAAAACATCAACAT+TGG | 0.544202 | 3_4:-12506550 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_4:+12504482 | Msa0490810:CDS |
| CGTCAAAAGGAGATGGTGGT+TGG | 0.556443 | 3_4:+12504878 | Msa0490810:CDS |
| GTGGACTTCACCCCAGCAGA+TGG | 0.559002 | 3_4:-12507074 | None:intergenic |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 3_4:+12504646 | Msa0490810:CDS |
| TCTTGCTCGCCGCTCCGACG+TGG | 0.568169 | 3_4:+12503749 | Msa0490810:CDS |
| TGAAATTCGTGCAACCTCGC+CGG | 0.571032 | 3_4:-12503813 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_4:+12504800 | Msa0490810:CDS |
| CCATGATTCTTTATTACTAG+GGG | 0.580036 | 3_4:-12504306 | None:intergenic |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3_4:+12504791 | Msa0490810:CDS |
| TAGATGGCGTCATGGAAGAT+GGG | 0.583522 | 3_4:-12507022 | None:intergenic |
| CTGAAATCGACCATCAATGT+TGG | 0.583839 | 3_4:+12506828 | Msa0490810:CDS |
| GACGATTCGTCAAAAGGAGA+TGG | 0.586508 | 3_4:+12504871 | Msa0490810:CDS |
| CAATCACGTCGTGACCTAGC+CGG | 0.587167 | 3_4:-12503777 | None:intergenic |
| ACCACTGGACTGTCTGATGT+TGG | 0.589854 | 3_4:-12504530 | None:intergenic |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 3_4:-12506384 | None:intergenic |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3_4:-12506862 | None:intergenic |
| TGATTGCGACATGATTTCAC+CGG | 0.603179 | 3_4:+12503794 | Msa0490810:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_4:+12506425 | Msa0490810:CDS |
| GATGCTGATAATGATAATGA+CGG | 0.607759 | 3_4:+12506522 | Msa0490810:CDS |
| TCACATCGGAGCGCGAGCAA+GGG | 0.626724 | 3_4:-12503836 | None:intergenic |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.626906 | 3_4:-12506078 | None:intergenic |
| TGAAGACTTAGATGGCGTCA+TGG | 0.632004 | 3_4:-12507030 | None:intergenic |
| ATCCCAACAGTCAACTGATG+TGG | 0.636424 | 3_4:+12506340 | Msa0490810:CDS |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3_4:+12504805 | Msa0490810:CDS |
| ATGCTGATAATGATAATGAC+GGG | 0.637606 | 3_4:+12506523 | Msa0490810:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_4:+12506263 | Msa0490810:CDS |
| GATTCGTCAAAAGGAGATGG+TGG | 0.644417 | 3_4:+12504874 | Msa0490810:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3_4:+12504227 | Msa0490810:CDS |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3_4:-12505838 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 3_4:-12506813 | None:intergenic |
| GCGACATGATTTCACCGGCG+AGG | 0.683680 | 3_4:+12503799 | Msa0490810:CDS |
| TATCGATGAACCATCTGCTG+GGG | 0.691010 | 3_4:+12507064 | Msa0490810:CDS |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 3_4:+12505840 | Msa0490810:CDS |
| GCCAACATCAGACAGTCCAG+TGG | 0.711751 | 3_4:+12504529 | Msa0490810:CDS |
| TGTCGCTGGAGAAATCACAT+CGG | 0.764902 | 3_4:-12503850 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATGTAAGTTATATAT+AGG | + | chr3_4:12505650-12505669 | Msa0490810:intron | 10.0% |
| !!! | ATATGATTTTTGTTGTATTT+AGG | + | chr3_4:12503904-12503923 | Msa0490810:intron | 15.0% |
| !! | ACAAAATAAGAAATCAAATA+AGG | + | chr3_4:12504436-12504455 | Msa0490810:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | + | chr3_4:12506051-12506070 | Msa0490810:CDS | 15.0% |
| !! | TTTGTTTATTCCAATTTATA+AGG | - | chr3_4:12507190-12507209 | None:intergenic | 15.0% |
| !!! | TTAGGTTTTGATTCAAATTT+CGG | + | chr3_4:12503922-12503941 | Msa0490810:intron | 20.0% |
| !! | CTTCAATTTATGATATCTAA+CGG | + | chr3_4:12504160-12504179 | Msa0490810:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3_4:12504353-12504372 | Msa0490810:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | + | chr3_4:12504639-12504658 | Msa0490810:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | + | chr3_4:12504640-12504659 | Msa0490810:CDS | 20.0% |
| !!! | TCAATTCAGAATATTTTTCT+AGG | + | chr3_4:12505880-12505899 | Msa0490810:CDS | 20.0% |
| !! | TTTCTATGAGTTAACTAATT+TGG | + | chr3_4:12505981-12506000 | Msa0490810:CDS | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr3_4:12506055-12506074 | Msa0490810:CDS | 20.0% |
| !!! | TGAAGCTTTAAAAAAAAAAG+TGG | + | chr3_4:12507220-12507239 | Msa0490810:CDS | 20.0% |
| !! | GATAAGGATCAATTTTTCTT+CGG | + | chr3_4:12504046-12504065 | Msa0490810:intron | 25.0% |
| ! | TACAACTCAAAATTTCGAAA+TGG | - | chr3_4:12504111-12504130 | None:intergenic | 25.0% |
| ! | TGTAGCAATTGAATATGTAA+AGG | + | chr3_4:12504127-12504146 | Msa0490810:intron | 25.0% |
| ! | TCCATGATTCTTTATTACTA+GGG | - | chr3_4:12504310-12504329 | None:intergenic | 25.0% |
| ! | TTCCATGATTCTTTATTACT+AGG | - | chr3_4:12504311-12504330 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3_4:12504387-12504406 | Msa0490810:CDS | 25.0% |
| !!! | GCTGTAATAAATTTTAAAGC+TGG | + | chr3_4:12504752-12504771 | Msa0490810:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | chr3_4:12504953-12504972 | None:intergenic | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr3_4:12505100-12505119 | None:intergenic | 25.0% |
| !! | TAGTATTTTGTACTTCTCTT+AGG | + | chr3_4:12505106-12505125 | Msa0490810:intron | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | + | chr3_4:12505150-12505169 | Msa0490810:intron | 25.0% |
| ! | CTCTTAAACATAAATGCATT+TGG | - | chr3_4:12505287-12505306 | None:intergenic | 25.0% |
| ! | ATTTATGTTTAAGAGATCAG+TGG | + | chr3_4:12505292-12505311 | Msa0490810:intron | 25.0% |
| ! | TTTATGTTTAAGAGATCAGT+GGG | + | chr3_4:12505293-12505312 | Msa0490810:intron | 25.0% |
| ! | ACATAAATGCATTCTAATTG+AGG | + | chr3_4:12505592-12505611 | Msa0490810:intron | 25.0% |
| ! | CATAAATGCATTCTAATTGA+GGG | + | chr3_4:12505593-12505612 | Msa0490810:intron | 25.0% |
| !! | GTTGTATTTTGTTCTGATTT+GGG | + | chr3_4:12505672-12505691 | Msa0490810:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr3_4:12505716-12505735 | None:intergenic | 25.0% |
| !! | ATTTTTCTAGGTGTTTTTCA+TGG | + | chr3_4:12505892-12505911 | Msa0490810:CDS | 25.0% |
| !! | TTTTTCTAGGTGTTTTTCAT+GGG | + | chr3_4:12505893-12505912 | Msa0490810:CDS | 25.0% |
| ! | AATCAGATTTCGATTACAAT+TGG | + | chr3_4:12506022-12506041 | Msa0490810:CDS | 25.0% |
| ! | ATCAGATTTCGATTACAATT+GGG | + | chr3_4:12506023-12506042 | Msa0490810:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3_4:12506248-12506267 | Msa0490810:CDS | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3_4:12506422-12506441 | Msa0490810:CDS | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | - | chr3_4:12506469-12506488 | None:intergenic | 25.0% |
| !!! | TACTTTAAAACATATTGTCC+AGG | - | chr3_4:12506774-12506793 | None:intergenic | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr3_4:12507122-12507141 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr3_4:12507156-12507175 | Msa0490810:CDS | 25.0% |
| ! | GTTAATGATTTTCTGCTCTT+AGG | + | chr3_4:12503949-12503968 | Msa0490810:intron | 30.0% |
| CCATGATTCTTTATTACTAG+GGG | - | chr3_4:12504309-12504328 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr3_4:12504374-12504393 | Msa0490810:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr3_4:12504470-12504489 | Msa0490810:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr3_4:12504481-12504500 | Msa0490810:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr3_4:12504482-12504501 | Msa0490810:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3_4:12504646-12504665 | Msa0490810:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3_4:12504683-12504702 | None:intergenic | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr3_4:12504785-12504804 | Msa0490810:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr3_4:12504839-12504858 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCTAGCATTTTT+TGG | + | chr3_4:12504987-12505006 | Msa0490810:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | + | chr3_4:12504988-12505007 | Msa0490810:CDS | 30.0% |
| ! | ATATTGATTGTTTGTTCGGT+AGG | - | chr3_4:12505074-12505093 | None:intergenic | 30.0% |
| ACCGAACAAACAATCAATAT+CGG | + | chr3_4:12505074-12505093 | Msa0490810:CDS | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr3_4:12505325-12505344 | Msa0490810:intron | 30.0% | |
| !! | AAAGAGCATTCTTATGATCA+AGG | - | chr3_4:12505369-12505388 | None:intergenic | 30.0% |
| ! | GGTTGTATTTTGTTCTGATT+TGG | + | chr3_4:12505671-12505690 | Msa0490810:intron | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | + | chr3_4:12505733-12505752 | Msa0490810:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr3_4:12505937-12505956 | Msa0490810:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr3_4:12506233-12506252 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3_4:12506427-12506446 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3_4:12506425-12506444 | Msa0490810:CDS | 30.0% | |
| ! | GATGCTGATAATGATAATGA+CGG | + | chr3_4:12506522-12506541 | Msa0490810:CDS | 30.0% |
| ! | ATGCTGATAATGATAATGAC+GGG | + | chr3_4:12506523-12506542 | Msa0490810:CDS | 30.0% |
| GATCATGATCTTCAAAACTT+GGG | - | chr3_4:12506596-12506615 | None:intergenic | 30.0% | |
| !!! | CATTTTTTGAAGACAATACC+TGG | + | chr3_4:12506753-12506772 | Msa0490810:intron | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3_4:12507104-12507123 | None:intergenic | 30.0% |
| GGCAGAAATTCCTTATAAAT+TGG | + | chr3_4:12507177-12507196 | Msa0490810:CDS | 30.0% | |
| !! | ATTCGTACTGCATTTTGAAG+AGG | + | chr3_4:12503872-12503891 | Msa0490810:CDS | 35.0% |
| TTAGCTTCAGTTGTAGCAAT+TGG | + | chr3_4:12504024-12504043 | Msa0490810:intron | 35.0% | |
| TCAGTTGTAGCAATTGGATA+AGG | + | chr3_4:12504030-12504049 | Msa0490810:intron | 35.0% | |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr3_4:12504199-12504218 | Msa0490810:intron | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr3_4:12504227-12504246 | Msa0490810:CDS | 35.0% | |
| CCCCTAGTAATAAAGAATCA+TGG | + | chr3_4:12504306-12504325 | Msa0490810:CDS | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | - | chr3_4:12504548-12504567 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3_4:12504565-12504584 | Msa0490810:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3_4:12504570-12504589 | Msa0490810:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3_4:12504571-12504590 | Msa0490810:CDS | 35.0% | |
| TTACTTCTCGAAATGATCTC+AGG | - | chr3_4:12504712-12504731 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3_4:12504722-12504741 | Msa0490810:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr3_4:12504784-12504803 | Msa0490810:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr3_4:12504791-12504810 | Msa0490810:CDS | 35.0% | |
| TCTAATGACGATTCGTCAAA+AGG | + | chr3_4:12504865-12504884 | Msa0490810:CDS | 35.0% | |
| ! | GCCGATATTGATTGTTTGTT+CGG | - | chr3_4:12505078-12505097 | None:intergenic | 35.0% |
| AACAATCAATATCGGCCATT+AGG | + | chr3_4:12505082-12505101 | Msa0490810:CDS | 35.0% | |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | + | chr3_4:12505155-12505174 | Msa0490810:intron | 35.0% |
| GATCTCTTAAACTACAGACT+CGG | - | chr3_4:12505242-12505261 | None:intergenic | 35.0% | |
| TACTTAGCAACCATTAAGCA+AGG | + | chr3_4:12505388-12505407 | Msa0490810:intron | 35.0% | |
| CAAGATGTATCCTTGCTTAA+TGG | - | chr3_4:12505401-12505420 | None:intergenic | 35.0% | |
| GGATACATCTTGTATTGAAC+AGG | + | chr3_4:12505409-12505428 | Msa0490810:intron | 35.0% | |
| AATGCATTCTAATTGAGGGT+TGG | + | chr3_4:12505597-12505616 | Msa0490810:intron | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | + | chr3_4:12505700-12505719 | Msa0490810:intron | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | - | chr3_4:12505830-12505849 | None:intergenic | 35.0% | |
| GCATAAGATTTCCGTAAGTT+TGG | - | chr3_4:12506107-12506126 | None:intergenic | 35.0% | |
| CTTACGGAAATCTTATGCAT+TGG | + | chr3_4:12506109-12506128 | Msa0490810:CDS | 35.0% | |
| ! | GTTAAGTCACATTTTACAGC+TGG | + | chr3_4:12506144-12506163 | Msa0490810:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3_4:12506192-12506211 | Msa0490810:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3_4:12506262-12506281 | Msa0490810:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3_4:12506263-12506282 | Msa0490810:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | - | chr3_4:12506387-12506406 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr3_4:12506388-12506407 | Msa0490810:CDS | 35.0% | |
| ! | GCATTCCAATGTTGATGTTT+TGG | + | chr3_4:12506545-12506564 | Msa0490810:intron | 35.0% |
| TGCATCCAAAACATCAACAT+TGG | - | chr3_4:12506553-12506572 | None:intergenic | 35.0% | |
| GATCTTCAAAACTTGGGAAA+AGG | - | chr3_4:12506590-12506609 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr3_4:12506597-12506616 | None:intergenic | 35.0% | |
| !! | ATCATGATCGACTTGATGAA+AGG | + | chr3_4:12506607-12506626 | Msa0490810:intron | 35.0% |
| !! | TCATGATCGACTTGATGAAA+GGG | + | chr3_4:12506608-12506627 | Msa0490810:intron | 35.0% |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr3_4:12506671-12506690 | Msa0490810:intron | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr3_4:12506704-12506723 | Msa0490810:intron | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr3_4:12506714-12506733 | Msa0490810:intron | 35.0% | |
| !! | GCATCTGAAATTTTTCTCGA+CGG | + | chr3_4:12506939-12506958 | Msa0490810:CDS | 35.0% |
| GAAGAGTTGCTTCTTTCTAA+AGG | + | chr3_4:12506987-12507006 | Msa0490810:CDS | 35.0% | |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr3_4:12507041-12507060 | None:intergenic | 35.0% |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr3_4:12507128-12507147 | None:intergenic | 35.0% |
| TGATTGCGACATGATTTCAC+CGG | + | chr3_4:12503794-12503813 | Msa0490810:CDS | 40.0% | |
| GTCTGCTTAATCCTAACAAC+AGG | + | chr3_4:12504507-12504526 | Msa0490810:CDS | 40.0% | |
| !!! | CTAGCATTTTTTGGGCAGAT+GGG | + | chr3_4:12504996-12505015 | Msa0490810:CDS | 40.0% |
| TGTTCTGGCATGGATAGTAT+AGG | + | chr3_4:12505165-12505184 | Msa0490810:intron | 40.0% | |
| ! | TTTTGAACTGCCTAGTGTGT+AGG | + | chr3_4:12505198-12505217 | Msa0490810:intron | 40.0% |
| GAGCATTCTTATGATCAAGG+CGG | - | chr3_4:12505366-12505385 | None:intergenic | 40.0% | |
| GTACTAAAGATCGATCACAC+AGG | - | chr3_4:12505448-12505467 | None:intergenic | 40.0% | |
| ATTGAGTTTACTCACTGCTG+AGG | + | chr3_4:12505517-12505536 | Msa0490810:intron | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr3_4:12505776-12505795 | Msa0490810:CDS | 40.0% |
| TGGTCTGTATATATCGTCTG+TGG | - | chr3_4:12505841-12505860 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | + | chr3_4:12505840-12505859 | Msa0490810:CDS | 40.0% | |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | + | chr3_4:12505905-12505924 | Msa0490810:CDS | 40.0% |
| !! | TTATGCATTGGTCTTCAGCT+TGG | + | chr3_4:12506121-12506140 | Msa0490810:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3_4:12506122-12506141 | Msa0490810:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr3_4:12506228-12506247 | None:intergenic | 40.0% | |
| GAGGGATAATCATGTTGAGT+TGG | + | chr3_4:12506281-12506300 | Msa0490810:CDS | 40.0% | |
| !! | TCATGTTGAGTTGGACTTCA+AGG | + | chr3_4:12506290-12506309 | Msa0490810:CDS | 40.0% |
| AACCACATCAGTTGACTGTT+GGG | - | chr3_4:12506345-12506364 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr3_4:12506438-12506457 | Msa0490810:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3_4:12506439-12506458 | Msa0490810:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr3_4:12506670-12506689 | Msa0490810:intron | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr3_4:12506672-12506691 | Msa0490810:intron | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr3_4:12506717-12506736 | Msa0490810:intron | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr3_4:12506816-12506835 | None:intergenic | 40.0% | |
| CTGAAATCGACCATCAATGT+TGG | + | chr3_4:12506828-12506847 | Msa0490810:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr3_4:12506865-12506884 | None:intergenic | 40.0% | |
| ! | ACGTTTTTGTGCAGATCTGA+AGG | + | chr3_4:12506917-12506936 | Msa0490810:CDS | 40.0% |
| TGTTCTTGAAGCTGGGAAAA+AGG | + | chr3_4:12506962-12506981 | Msa0490810:CDS | 40.0% | |
| ! | TTCTTTGAACTTTGGTGCAG+TGG | - | chr3_4:12507096-12507115 | None:intergenic | 40.0% |
| TGTCGCTGGAGAAATCACAT+CGG | - | chr3_4:12503853-12503872 | None:intergenic | 45.0% | |
| AAATGCAGTACGAATGTCGC+TGG | - | chr3_4:12503867-12503886 | None:intergenic | 45.0% | |
| ! | TCTGATGTTGGCCTGTTGTT+AGG | - | chr3_4:12504521-12504540 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3_4:12504575-12504594 | Msa0490810:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3_4:12504584-12504603 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3_4:12504587-12504606 | Msa0490810:CDS | 45.0% |
| CTCAGGTAACACAAATGCTC+TGG | - | chr3_4:12504695-12504714 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr3_4:12504797-12504816 | Msa0490810:CDS | 45.0% | |
| ! | GCACGGAGAATCTTCCTTTT+CGG | + | chr3_4:12504822-12504841 | Msa0490810:CDS | 45.0% |
| GACGATTCGTCAAAAGGAGA+TGG | + | chr3_4:12504871-12504890 | Msa0490810:CDS | 45.0% | |
| GATTCGTCAAAAGGAGATGG+TGG | + | chr3_4:12504874-12504893 | Msa0490810:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr3_4:12504973-12504992 | None:intergenic | 45.0% | |
| !!! | GCTAGCATTTTTTGGGCAGA+TGG | + | chr3_4:12504995-12505014 | Msa0490810:CDS | 45.0% |
| CTGGCATGGATAGTATAGGT+AGG | + | chr3_4:12505169-12505188 | Msa0490810:intron | 45.0% | |
| CGATCACACAGGACAATTTC+TGG | - | chr3_4:12505437-12505456 | None:intergenic | 45.0% | |
| AATTCAACAACGCACTAGCC+TGG | - | chr3_4:12505861-12505880 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | + | chr3_4:12506073-12506092 | Msa0490810:CDS | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | - | chr3_4:12506081-12506100 | None:intergenic | 45.0% |
| ! | AGGTGGCTTGTCCAAACTTA+CGG | + | chr3_4:12506093-12506112 | Msa0490810:CDS | 45.0% |
| ATCCCAACAGTCAACTGATG+TGG | + | chr3_4:12506340-12506359 | Msa0490810:CDS | 45.0% | |
| GAACCACATCAGTTGACTGT+TGG | - | chr3_4:12506346-12506365 | None:intergenic | 45.0% | |
| GTCTTCAGTGCCAACATTGA+TGG | - | chr3_4:12506841-12506860 | None:intergenic | 45.0% | |
| TAGATGGCGTCATGGAAGAT+GGG | - | chr3_4:12507025-12507044 | None:intergenic | 45.0% | |
| TTAGATGGCGTCATGGAAGA+TGG | - | chr3_4:12507026-12507045 | None:intergenic | 45.0% | |
| TGAAGACTTAGATGGCGTCA+TGG | - | chr3_4:12507033-12507052 | None:intergenic | 45.0% | |
| CTATCGATGAACCATCTGCT+GGG | + | chr3_4:12507063-12507082 | Msa0490810:CDS | 45.0% | |
| TATCGATGAACCATCTGCTG+GGG | + | chr3_4:12507064-12507083 | Msa0490810:CDS | 45.0% | |
| TGAAATTCGTGCAACCTCGC+CGG | - | chr3_4:12503816-12503835 | None:intergenic | 50.0% | |
| ACCACTGGACTGTCTGATGT+TGG | - | chr3_4:12504533-12504552 | None:intergenic | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr3_4:12504800-12504819 | Msa0490810:CDS | 50.0% | |
| ! | CGTCAAAAGGAGATGGTGGT+TGG | + | chr3_4:12504878-12504897 | Msa0490810:CDS | 50.0% |
| GACACACACACCTACACACT+AGG | - | chr3_4:12505211-12505230 | None:intergenic | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | + | chr3_4:12506076-12506095 | Msa0490810:CDS | 50.0% | |
| TCGACGGTGTTCTTGAAGCT+GGG | + | chr3_4:12506955-12506974 | Msa0490810:CDS | 50.0% | |
| GCTATCGATGAACCATCTGC+TGG | + | chr3_4:12507062-12507081 | Msa0490810:CDS | 50.0% | |
| CCTAGCCGGAAAAACCACGT+CGG | - | chr3_4:12503766-12503785 | None:intergenic | 55.0% | |
| CAATCACGTCGTGACCTAGC+CGG | - | chr3_4:12503780-12503799 | None:intergenic | 55.0% | |
| GCCAACATCAGACAGTCCAG+TGG | + | chr3_4:12504529-12504548 | Msa0490810:CDS | 55.0% | |
| TGGGCTTTGCTCATGGCACA+TGG | + | chr3_4:12505912-12505931 | Msa0490810:CDS | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr3_4:12506954-12506973 | Msa0490810:CDS | 55.0% | |
| CCGGAAAAACCACGTCGGAG+CGG | - | chr3_4:12503761-12503780 | None:intergenic | 60.0% | |
| ! | CCGCTCCGACGTGGTTTTTC+CGG | + | chr3_4:12503758-12503777 | Msa0490810:CDS | 60.0% |
| ! | CCGACGTGGTTTTTCCGGCT+AGG | + | chr3_4:12503763-12503782 | Msa0490810:CDS | 60.0% |
| GCGACATGATTTCACCGGCG+AGG | + | chr3_4:12503799-12503818 | Msa0490810:CDS | 60.0% | |
| TCACATCGGAGCGCGAGCAA+GGG | - | chr3_4:12503839-12503858 | None:intergenic | 60.0% | |
| ATCACATCGGAGCGCGAGCA+AGG | - | chr3_4:12503840-12503859 | None:intergenic | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3_4:12504805-12504824 | Msa0490810:CDS | 60.0% | |
| GTGGACTTCACCCCAGCAGA+TGG | - | chr3_4:12507077-12507096 | None:intergenic | 60.0% | |
| TCTTGCTCGCCGCTCCGACG+TGG | + | chr3_4:12503749-12503768 | Msa0490810:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 12503720 | 12507253 | 12503720 | ID=Msa0490810;Name=Msa0490810 |
| chr3_4 | mRNA | 12503720 | 12507253 | 12503720 | ID=Msa0490810-mRNA-1;Parent=Msa0490810;Name=Msa0490810-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.33|0|0.75|1|1|4|0|794 |
| chr3_4 | exon | 12503720 | 12503893 | 12503720 | ID=Msa0490810-mRNA-1:exon:3866;Parent=Msa0490810-mRNA-1 |
| chr3_4 | exon | 12504200 | 12505103 | 12504200 | ID=Msa0490810-mRNA-1:exon:3867;Parent=Msa0490810-mRNA-1 |
| chr3_4 | exon | 12505710 | 12506560 | 12505710 | ID=Msa0490810-mRNA-1:exon:3868;Parent=Msa0490810-mRNA-1 |
| chr3_4 | exon | 12506798 | 12507253 | 12506798 | ID=Msa0490810-mRNA-1:exon:3869;Parent=Msa0490810-mRNA-1 |
| chr3_4 | CDS | 12503720 | 12503893 | 12503720 | ID=Msa0490810-mRNA-1:cds;Parent=Msa0490810-mRNA-1 |
| chr3_4 | CDS | 12504200 | 12505103 | 12504200 | ID=Msa0490810-mRNA-1:cds;Parent=Msa0490810-mRNA-1 |
| chr3_4 | CDS | 12505710 | 12506560 | 12505710 | ID=Msa0490810-mRNA-1:cds;Parent=Msa0490810-mRNA-1 |
| chr3_4 | CDS | 12506798 | 12507253 | 12506798 | ID=Msa0490810-mRNA-1:cds;Parent=Msa0490810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
