Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491010 | QJS95126.1 | 87.912 | 364 | 12 | 2 | 1 | 332 | 1 | 364 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491010 | sp|Q84MZ4|TF3A_ARATH | 47.815 | 389 | 119 | 4 | 14 | 319 | 15 | 402 | 3.71e-116 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491010 | A0A6M4W3T1 | 87.912 | 364 | 12 | 2 | 1 | 332 | 1 | 364 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0491010 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491010 | MtrunA17_Chr3g0082161 | 85.455 | 275 | 9 | 1 | 89 | 332 | 10 | 284 | 1.87e-169 | 472 |
| Msa0491010 | MtrunA17_Chr1g0164511 | 84.727 | 275 | 11 | 1 | 89 | 332 | 10 | 284 | 1.87e-168 | 469 |
| Msa0491010 | MtrunA17_Chr1g0164501 | 83.645 | 214 | 25 | 2 | 119 | 332 | 16 | 219 | 1.47e-126 | 361 |
| Msa0491010 | MtrunA17_Chr8g0353321 | 57.576 | 264 | 80 | 2 | 88 | 320 | 36 | 298 | 1.30e-106 | 313 |
| Msa0491010 | MtrunA17_Chr3g0082151 | 76.667 | 60 | 10 | 2 | 46 | 104 | 1 | 57 | 2.26e-22 | 89.0 |
| Msa0491010 | MtrunA17_Chr1g0164521 | 76.667 | 60 | 10 | 2 | 46 | 104 | 1 | 57 | 2.26e-22 | 89.0 |
| Msa0491010 | MtrunA17_Chr2g0277381 | 26.217 | 267 | 168 | 8 | 67 | 325 | 82 | 327 | 9.95e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491010 | AT1G72050.2 | 47.815 | 389 | 119 | 4 | 14 | 319 | 15 | 402 | 3.77e-117 | 345 |
| Msa0491010 | AT1G72050.3 | 47.815 | 389 | 119 | 4 | 14 | 319 | 30 | 417 | 4.44e-117 | 345 |
| Msa0491010 | AT1G72050.1 | 45.860 | 314 | 87 | 3 | 88 | 319 | 2 | 314 | 3.51e-88 | 268 |
| Msa0491010 | AT1G72050.4 | 42.391 | 276 | 77 | 2 | 88 | 281 | 2 | 277 | 1.09e-68 | 218 |
Find 83 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3_4:-13022294 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3_4:-13022359 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3_4:-13024240 | None:intergenic |
| ATTCTTCCATTGTTGATAGA+AGG | 0.318947 | 3_4:-13022251 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3_4:-13022358 | None:intergenic |
| AATTGACATTTAATTGCTTC+GGG | 0.328016 | 3_4:-13024355 | None:intergenic |
| AAATTGACATTTAATTGCTT+CGG | 0.336032 | 3_4:-13024356 | None:intergenic |
| GTGCAGGATTGTCAGTAAAA+TGG | 0.338868 | 3_4:+13024907 | Msa0491010:exon |
| AATTGCTTCGGGTGAATTGC+TGG | 0.343507 | 3_4:-13024344 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3_4:+13024782 | Msa0491010:CDS |
| GCAAACCTCATCCCACAATT+AGG | 0.363573 | 3_4:-13024574 | None:intergenic |
| CCACAGTAGAAATGTTAGTT+AGG | 0.390467 | 3_4:+13024842 | Msa0491010:CDS |
| AATGAATGAGTGAGGCTACT+AGG | 0.392977 | 3_4:-13022179 | None:intergenic |
| AGTAAAATGGATCATACTAT+AGG | 0.403153 | 3_4:+13024920 | Msa0491010:exon |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3_4:-13022326 | None:intergenic |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.422735 | 3_4:+13024562 | Msa0491010:CDS |
| TCGATCCTTCCAGTGTTTGT+AGG | 0.422844 | 3_4:-13022205 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3_4:-13024811 | None:intergenic |
| AGCAATTAAATGTCAATTTG+AGG | 0.438471 | 3_4:+13024360 | Msa0491010:CDS |
| GCAATTAAATGTCAATTTGA+GGG | 0.445979 | 3_4:+13024361 | Msa0491010:CDS |
| AGAGAACTTGTTATTCGTGC+AGG | 0.446937 | 3_4:+13024891 | Msa0491010:CDS |
| TTCAAACCACCCTCTGATTG+AGG | 0.447189 | 3_4:-13022820 | None:intergenic |
| ACAATACAATCGATCAAAAC+AGG | 0.447671 | 3_4:-13024961 | None:intergenic |
| CCTATTGAGAATTGCAAAAG+TGG | 0.452860 | 3_4:+13023875 | Msa0491010:CDS |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3_4:+13023784 | Msa0491010:CDS |
| TGTGTGGGTTTCCTAATTGT+GGG | 0.470341 | 3_4:+13024563 | Msa0491010:CDS |
| ATGTGACCTGCGACACTTGT+GGG | 0.475355 | 3_4:+13024272 | Msa0491010:CDS |
| AAATTTATAGTCATGAATGA+TGG | 0.482934 | 3_4:+13025037 | Msa0491010:three_prime_UTR |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3_4:+13024801 | Msa0491010:CDS |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3_4:-13023790 | None:intergenic |
| TTGTTGATAGAAGGAATTGT+GGG | 0.500721 | 3_4:-13022242 | None:intergenic |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3_4:+13024800 | Msa0491010:CDS |
| TTCATTCTGCCTACAAACAC+TGG | 0.520115 | 3_4:+13022196 | Msa0491010:five_prime_UTR |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3_4:-13023776 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.529952 | 3_4:-13024233 | None:intergenic |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.530955 | 3_4:+13024547 | Msa0491010:CDS |
| GGTTTCCTAATTGTGGGATG+AGG | 0.531394 | 3_4:+13024569 | Msa0491010:CDS |
| ATGAATGAGTGAGGCTACTA+GGG | 0.532513 | 3_4:-13022178 | None:intergenic |
| CTTAGTCCCACAAGTGTCGC+AGG | 0.537296 | 3_4:-13024278 | None:intergenic |
| TGTCGCAGGTCACATATTGA+TGG | 0.542996 | 3_4:-13024264 | None:intergenic |
| TGAAACTGAACCTCAATCAG+AGG | 0.544355 | 3_4:+13022810 | Msa0491010:CDS |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3_4:+13024794 | Msa0491010:CDS |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.550967 | 3_4:+13024548 | Msa0491010:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3_4:+13023836 | Msa0491010:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3_4:-13024556 | None:intergenic |
| CTAACTAACATTTCTACTGT+GGG | 0.561562 | 3_4:-13024841 | None:intergenic |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3_4:-13024876 | None:intergenic |
| ACTATAGGCTAAAAGTTATG+TGG | 0.575229 | 3_4:+13024935 | Msa0491010:three_prime_UTR |
| CCTAACTAACATTTCTACTG+TGG | 0.575540 | 3_4:-13024842 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3_4:+13022371 | Msa0491010:CDS |
| GCAGGTCACATATTGATGGC+AGG | 0.577986 | 3_4:-13024260 | None:intergenic |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3_4:+13022315 | Msa0491010:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3_4:+13024799 | Msa0491010:CDS |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3_4:-13024877 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3_4:+13024795 | Msa0491010:CDS |
| ACAATTCCTTCTATCAACAA+TGG | 0.586327 | 3_4:+13022245 | Msa0491010:exon |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3_4:+13024187 | Msa0491010:CDS |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3_4:+13023802 | Msa0491010:CDS |
| ATTGTTGATAGAAGGAATTG+TGG | 0.593661 | 3_4:-13022243 | None:intergenic |
| TAGGCTTGATACAATTGAAG+TGG | 0.594031 | 3_4:+13024171 | Msa0491010:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3_4:-13022371 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3_4:+13024302 | Msa0491010:CDS |
| TAATCTTCATAAGCATGAGA+AGG | 0.603913 | 3_4:+13024513 | Msa0491010:CDS |
| TTCTGCCTACAAACACTGGA+AGG | 0.607016 | 3_4:+13022200 | Msa0491010:five_prime_UTR |
| TAATTGAACAAATACCTCGA+GGG | 0.608678 | 3_4:-13022917 | None:intergenic |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3_4:-13024875 | None:intergenic |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3_4:+13023837 | Msa0491010:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.617741 | 3_4:+13022837 | Msa0491010:CDS |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3_4:+13024788 | Msa0491010:CDS |
| ACTAACATTTCTACTGTGGG+AGG | 0.639382 | 3_4:-13024838 | None:intergenic |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3_4:+13023950 | Msa0491010:CDS |
| GAAACTGAACCTCAATCAGA+GGG | 0.642449 | 3_4:+13022811 | Msa0491010:CDS |
| GTTGATAGAAGGAATTGTGG+GGG | 0.645643 | 3_4:-13022240 | None:intergenic |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3_4:-13022370 | None:intergenic |
| AATTGCTGGCTTCATGTGTG+CGG | 0.654316 | 3_4:-13024330 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.656480 | 3_4:-13024880 | None:intergenic |
| TATGTGACCTGCGACACTTG+TGG | 0.670362 | 3_4:+13024271 | Msa0491010:CDS |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3_4:+13022844 | Msa0491010:CDS |
| TGTTGATAGAAGGAATTGTG+GGG | 0.673150 | 3_4:-13022241 | None:intergenic |
| GTAGGCAGAATGAATGAGTG+AGG | 0.676225 | 3_4:-13022187 | None:intergenic |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3_4:+13024796 | Msa0491010:CDS |
| ACTGAACCTCAATCAGAGGG+TGG | 0.697506 | 3_4:+13022814 | Msa0491010:CDS |
| TATGCAAAGTCATTCCCTCG+AGG | 0.752078 | 3_4:+13022903 | Msa0491010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTACTAATTGTTT+AGG | + | chr3_4:13022641-13022660 | Msa0491010:intron | 10.0% |
| !! | TTATACTTTATAATTCATTT+AGG | + | chr3_4:13023011-13023030 | Msa0491010:intron | 10.0% |
| !! | AAAATATGAATTTGTATATT+TGG | + | chr3_4:13023372-13023391 | Msa0491010:intron | 10.0% |
| !! | AATGATCTATAAAATAATTA+TGG | + | chr3_4:13023486-13023505 | Msa0491010:intron | 10.0% |
| !! | TAAAAAATGTAACAAAAATT+TGG | - | chr3_4:13024460-13024479 | None:intergenic | 10.0% |
| !!! | TGTAGAAATTTTATATATTT+AGG | + | chr3_4:13024983-13025002 | Msa0491010:three_prime_UTR | 10.0% |
| !!! | ATTTTATATATTTAGGAATT+AGG | + | chr3_4:13024990-13025009 | Msa0491010:three_prime_UTR | 10.0% |
| !!! | AGTTTTAGTTTTATGAATTT+AGG | + | chr3_4:13022615-13022634 | Msa0491010:intron | 15.0% |
| !!! | GTTTTAGTTTTATGAATTTA+GGG | + | chr3_4:13022616-13022635 | Msa0491010:intron | 15.0% |
| !!! | ATTTTTTTGATGTGAATTTT+AGG | + | chr3_4:13022765-13022784 | Msa0491010:intron | 15.0% |
| !! | ATAAACTAGTTAAATTTAGA+AGG | - | chr3_4:13022995-13023014 | None:intergenic | 15.0% |
| !! | TCTTTCATAAATCTAAATAA+AGG | - | chr3_4:13024113-13024132 | None:intergenic | 15.0% |
| !! | TCAAGATTTATTTCATATAT+AGG | + | chr3_4:13024750-13024769 | Msa0491010:intron | 15.0% |
| !! | CAAGATTTATTTCATATATA+GGG | + | chr3_4:13024751-13024770 | Msa0491010:intron | 15.0% |
| !!! | GATCTATAGTTTTAACTAAA+TGG | + | chr3_4:13022421-13022440 | Msa0491010:intron | 20.0% |
| !!! | ACTCAAAATTTGTTCATTTT+CGG | - | chr3_4:13022462-13022481 | None:intergenic | 20.0% |
| !!! | ATGAACAAATTTTGAGTATT+AGG | + | chr3_4:13022465-13022484 | Msa0491010:intron | 20.0% |
| !!! | TGAACAAATTTTGAGTATTA+GGG | + | chr3_4:13022466-13022485 | Msa0491010:intron | 20.0% |
| !! | TATAAACAAGTTAAATCTAG+AGG | - | chr3_4:13023103-13023122 | None:intergenic | 20.0% |
| !!! | TGTTTTTGATAAAAACACTA+TGG | + | chr3_4:13023179-13023198 | Msa0491010:intron | 20.0% |
| !! | GTTATTGTTGAAATTTAGTA+AGG | + | chr3_4:13023252-13023271 | Msa0491010:intron | 20.0% |
| !! | TATCATTAAATTCGTTTGTA+TGG | + | chr3_4:13023285-13023304 | Msa0491010:intron | 20.0% |
| !!! | ATATGCATGTTTTATATGTT+TGG | + | chr3_4:13023323-13023342 | Msa0491010:intron | 20.0% |
| !!! | ATGTTTTATATGTTTGGTTT+TGG | + | chr3_4:13023329-13023348 | Msa0491010:intron | 20.0% |
| !!! | TGAATTTGTATATTTGGTTT+TGG | + | chr3_4:13023378-13023397 | Msa0491010:intron | 20.0% |
| !!! | TTTTTAAAGAAATAGAACTC+TGG | - | chr3_4:13023405-13023424 | None:intergenic | 20.0% |
| !! | AAATTGACATTTAATTGCTT+CGG | - | chr3_4:13024359-13024378 | None:intergenic | 20.0% |
| !! | ATATATGAAATAAACAAGGA+CGG | - | chr3_4:13024664-13024683 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTATTTCATATAT+AGG | + | chr3_4:13024664-13024683 | Msa0491010:intron | 20.0% |
| !!! | CCTTGTTTATTTCATATATA+GGG | + | chr3_4:13024665-13024684 | Msa0491010:intron | 20.0% |
| !! | AAATTTATAGTCATGAATGA+TGG | + | chr3_4:13025037-13025056 | Msa0491010:three_prime_UTR | 20.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3_4:13022296-13022315 | None:intergenic | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3_4:13022481-13022500 | Msa0491010:intron | 25.0% |
| ! | GAAGAAAAGCAAAACAATTA+GGG | - | chr3_4:13022525-13022544 | None:intergenic | 25.0% |
| ! | TGAAGAAAAGCAAAACAATT+AGG | - | chr3_4:13022526-13022545 | None:intergenic | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | + | chr3_4:13022694-13022713 | Msa0491010:intron | 25.0% |
| !! | TTTTTGATGTGAATTTTAGG+AGG | + | chr3_4:13022768-13022787 | Msa0491010:intron | 25.0% |
| ! | TGTTGTGTATACTTGAATAT+TGG | + | chr3_4:13023075-13023094 | Msa0491010:intron | 25.0% |
| ! | GTTGTGTATACTTGAATATT+GGG | + | chr3_4:13023076-13023095 | Msa0491010:intron | 25.0% |
| ! | TTGTGTATACTTGAATATTG+GGG | + | chr3_4:13023077-13023096 | Msa0491010:intron | 25.0% |
| ! | TTGTTGAAATTTAGTAAGGA+TGG | + | chr3_4:13023256-13023275 | Msa0491010:intron | 25.0% |
| !!! | TTTTTTAAGAAAAAGAACCC+TGG | - | chr3_4:13023356-13023375 | None:intergenic | 25.0% |
| ! | AGTTGACAAAATTGAAAGAA+AGG | - | chr3_4:13024076-13024095 | None:intergenic | 25.0% |
| ! | AATTGACATTTAATTGCTTC+GGG | - | chr3_4:13024358-13024377 | None:intergenic | 25.0% |
| ! | AGCAATTAAATGTCAATTTG+AGG | + | chr3_4:13024360-13024379 | Msa0491010:CDS | 25.0% |
| ! | GCAATTAAATGTCAATTTGA+GGG | + | chr3_4:13024361-13024380 | Msa0491010:CDS | 25.0% |
| !!! | CATTTTTTAACTTCCAATTG+TGG | + | chr3_4:13024471-13024490 | Msa0491010:intron | 25.0% |
| ! | CCCTATATATGAAATAAACA+AGG | - | chr3_4:13024668-13024687 | None:intergenic | 25.0% |
| ! | AGTAAAATGGATCATACTAT+AGG | + | chr3_4:13024920-13024939 | Msa0491010:exon | 25.0% |
| ! | TTGTTGATAGAAGGAATTGT+GGG | - | chr3_4:13022245-13022264 | None:intergenic | 30.0% |
| ! | ATTGTTGATAGAAGGAATTG+TGG | - | chr3_4:13022246-13022265 | None:intergenic | 30.0% |
| ACAATTCCTTCTATCAACAA+TGG | + | chr3_4:13022245-13022264 | Msa0491010:exon | 30.0% | |
| ! | ATTCTTCCATTGTTGATAGA+AGG | - | chr3_4:13022254-13022273 | None:intergenic | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3_4:13022297-13022316 | None:intergenic | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3_4:13022352-13022371 | None:intergenic | 30.0% |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3_4:13022361-13022380 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3_4:13022362-13022381 | None:intergenic | 30.0% | |
| !! | TTTCTACAGTTTTAACCCAA+TGG | + | chr3_4:13022558-13022577 | Msa0491010:intron | 30.0% |
| !! | TTCTACAGTTTTAACCCAAT+GGG | + | chr3_4:13022559-13022578 | Msa0491010:intron | 30.0% |
| AAGAAATTGAGTAACCCATT+GGG | - | chr3_4:13022576-13022595 | None:intergenic | 30.0% | |
| TAAGAAATTGAGTAACCCAT+TGG | - | chr3_4:13022577-13022596 | None:intergenic | 30.0% | |
| TATGTGTGATTGATTGTGTA+TGG | + | chr3_4:13022722-13022741 | Msa0491010:intron | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3_4:13022837-13022856 | Msa0491010:CDS | 30.0% | |
| TAATTGAACAAATACCTCGA+GGG | - | chr3_4:13022920-13022939 | None:intergenic | 30.0% | |
| ATAATTGAACAAATACCTCG+AGG | - | chr3_4:13022921-13022940 | None:intergenic | 30.0% | |
| !! | CTAAAGATACATGTTTTTGC+AGG | + | chr3_4:13023441-13023460 | Msa0491010:intron | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3_4:13023509-13023528 | Msa0491010:intron | 30.0% |
| AGGATTTAACATGAGCTTTA+AGG | - | chr3_4:13024243-13024262 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3_4:13024302-13024321 | Msa0491010:CDS | 30.0% | |
| TAATCTTCATAAGCATGAGA+AGG | + | chr3_4:13024513-13024532 | Msa0491010:CDS | 30.0% | |
| ! | TTTGCAGTAAGATGTTTTGT+CGG | - | chr3_4:13024705-13024724 | None:intergenic | 30.0% |
| CTAACTAACATTTCTACTGT+GGG | - | chr3_4:13024844-13024863 | None:intergenic | 30.0% | |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3_4:13024883-13024902 | None:intergenic | 30.0% | |
| ACTATAGGCTAAAAGTTATG+TGG | + | chr3_4:13024935-13024954 | Msa0491010:three_prime_UTR | 30.0% | |
| ACAATACAATCGATCAAAAC+AGG | - | chr3_4:13024964-13024983 | None:intergenic | 30.0% | |
| ! | TGTTGATAGAAGGAATTGTG+GGG | - | chr3_4:13022244-13022263 | None:intergenic | 35.0% |
| !!! | ATTTTGGGATTGCATCGTTT+TGG | - | chr3_4:13022281-13022300 | None:intergenic | 35.0% |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3_4:13022373-13022392 | None:intergenic | 35.0% | |
| !! | ATGTGAATTTTAGGAGGAGA+TGG | + | chr3_4:13022774-13022793 | Msa0491010:intron | 35.0% |
| ! | TTTAGAAGGCTCTAATACAC+AGG | - | chr3_4:13022981-13023000 | None:intergenic | 35.0% |
| !!! | TATATGTTTGGTTTTGGTCC+AGG | + | chr3_4:13023335-13023354 | Msa0491010:intron | 35.0% |
| !!! | ATATGTTTGGTTTTGGTCCA+GGG | + | chr3_4:13023336-13023355 | Msa0491010:intron | 35.0% |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3_4:13023537-13023556 | None:intergenic | 35.0% | |
| !! | TCTCTTGTGATTTGTTACAG+AGG | + | chr3_4:13023753-13023772 | Msa0491010:intron | 35.0% |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3_4:13023779-13023798 | None:intergenic | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3_4:13023784-13023803 | Msa0491010:CDS | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3_4:13023844-13023863 | None:intergenic | 35.0% |
| !! | CCACTTTTGCAATTCTCAAT+AGG | - | chr3_4:13023878-13023897 | None:intergenic | 35.0% |
| CCTATTGAGAATTGCAAAAG+TGG | + | chr3_4:13023875-13023894 | Msa0491010:CDS | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3_4:13023986-13024005 | Msa0491010:intron | 35.0% | |
| ATCTTCATGCTTCTGTAGTT+GGG | - | chr3_4:13024038-13024057 | None:intergenic | 35.0% | |
| AATCTTCATGCTTCTGTAGT+TGG | - | chr3_4:13024039-13024058 | None:intergenic | 35.0% | |
| AAAACCTTTATGCTGCAGTT+AGG | + | chr3_4:13024152-13024171 | Msa0491010:intron | 35.0% | |
| TAGGCTTGATACAATTGAAG+TGG | + | chr3_4:13024171-13024190 | Msa0491010:CDS | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | - | chr3_4:13024208-13024227 | None:intergenic | 35.0% | |
| TATGCAATGCCAATGTATGA+TGG | - | chr3_4:13024423-13024442 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3_4:13024782-13024801 | Msa0491010:CDS | 35.0% | |
| CCTAACTAACATTTCTACTG+TGG | - | chr3_4:13024845-13024864 | None:intergenic | 35.0% | |
| CCACAGTAGAAATGTTAGTT+AGG | + | chr3_4:13024842-13024861 | Msa0491010:CDS | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3_4:13024879-13024898 | None:intergenic | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3_4:13024880-13024899 | None:intergenic | 35.0% | |
| ATGAATGAGTGAGGCTACTA+GGG | - | chr3_4:13022181-13022200 | None:intergenic | 40.0% | |
| AATGAATGAGTGAGGCTACT+AGG | - | chr3_4:13022182-13022201 | None:intergenic | 40.0% | |
| TTCATTCTGCCTACAAACAC+TGG | + | chr3_4:13022196-13022215 | Msa0491010:five_prime_UTR | 40.0% | |
| ! | GTTGATAGAAGGAATTGTGG+GGG | - | chr3_4:13022243-13022262 | None:intergenic | 40.0% |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3_4:13022329-13022348 | None:intergenic | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3_4:13022374-13022393 | None:intergenic | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3_4:13022371-13022390 | Msa0491010:CDS | 40.0% | |
| TGAAACTGAACCTCAATCAG+AGG | + | chr3_4:13022810-13022829 | Msa0491010:CDS | 40.0% | |
| GAAACTGAACCTCAATCAGA+GGG | + | chr3_4:13022811-13022830 | Msa0491010:CDS | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3_4:13022844-13022863 | Msa0491010:CDS | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr3_4:13023228-13023247 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr3_4:13023229-13023248 | None:intergenic | 40.0% |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3_4:13023538-13023557 | None:intergenic | 40.0% | |
| AACCTGATACTAATCCACCA+AGG | - | chr3_4:13023579-13023598 | None:intergenic | 40.0% | |
| !! | TTGGTGGATTAGTATCAGGT+TGG | + | chr3_4:13023578-13023597 | Msa0491010:intron | 40.0% |
| !! | TGGTGGATTAGTATCAGGTT+GGG | + | chr3_4:13023579-13023598 | Msa0491010:intron | 40.0% |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3_4:13023611-13023630 | None:intergenic | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3_4:13023837-13023856 | Msa0491010:CDS | 40.0% | |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3_4:13023965-13023984 | None:intergenic | 40.0% |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3_4:13024043-13024062 | Msa0491010:intron | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3_4:13024236-13024255 | None:intergenic | 40.0% |
| ATACCTCCTCCATCATACAT+TGG | + | chr3_4:13024411-13024430 | Msa0491010:intron | 40.0% | |
| TGTTGAAGCACATCCACAAT+TGG | - | chr3_4:13024487-13024506 | None:intergenic | 40.0% | |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3_4:13024548-13024567 | Msa0491010:CDS | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3_4:13024559-13024578 | None:intergenic | 40.0% | |
| TGTGTGGGTTTCCTAATTGT+GGG | + | chr3_4:13024563-13024582 | Msa0491010:CDS | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3_4:13024788-13024807 | Msa0491010:CDS | 40.0% | |
| ACTAACATTTCTACTGTGGG+AGG | - | chr3_4:13024841-13024860 | None:intergenic | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3_4:13024878-13024897 | None:intergenic | 40.0% | |
| !! | AGAGAACTTGTTATTCGTGC+AGG | + | chr3_4:13024891-13024910 | Msa0491010:CDS | 40.0% |
| GTGCAGGATTGTCAGTAAAA+TGG | + | chr3_4:13024907-13024926 | Msa0491010:exon | 40.0% | |
| GTAGGCAGAATGAATGAGTG+AGG | - | chr3_4:13022190-13022209 | None:intergenic | 45.0% | |
| TTCTGCCTACAAACACTGGA+AGG | + | chr3_4:13022200-13022219 | Msa0491010:five_prime_UTR | 45.0% | |
| TCGATCCTTCCAGTGTTTGT+AGG | - | chr3_4:13022208-13022227 | None:intergenic | 45.0% | |
| GAATTGTGGGGGAAATTGAG+GGG | - | chr3_4:13022232-13022251 | None:intergenic | 45.0% | |
| GGAATTGTGGGGGAAATTGA+GGG | - | chr3_4:13022233-13022252 | None:intergenic | 45.0% | |
| AGGAATTGTGGGGGAAATTG+AGG | - | chr3_4:13022234-13022253 | None:intergenic | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3_4:13022315-13022334 | Msa0491010:CDS | 45.0% | |
| TTCAAACCACCCTCTGATTG+AGG | - | chr3_4:13022823-13022842 | None:intergenic | 45.0% | |
| TATGCAAAGTCATTCCCTCG+AGG | + | chr3_4:13022903-13022922 | Msa0491010:CDS | 45.0% | |
| TTTATCCCACTAAGTGGGGT+TGG | - | chr3_4:13023224-13023243 | None:intergenic | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr3_4:13023230-13023249 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr3_4:13023227-13023246 | Msa0491010:intron | 45.0% | |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3_4:13023541-13023560 | Msa0491010:intron | 45.0% | |
| GCTTCATCAAGGATTTGCCT+CGG | + | chr3_4:13023616-13023635 | Msa0491010:intron | 45.0% | |
| ! | TTTTGAATTGAGCGTGACCG+AGG | - | chr3_4:13023636-13023655 | None:intergenic | 45.0% |
| GTCACGCTCAATTCAAAACG+AGG | + | chr3_4:13023638-13023657 | Msa0491010:intron | 45.0% | |
| CAAAGCTGATCAGCAGTTGT+CGG | + | chr3_4:13023697-13023716 | Msa0491010:intron | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | - | chr3_4:13023793-13023812 | None:intergenic | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | + | chr3_4:13023802-13023821 | Msa0491010:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3_4:13023836-13023855 | Msa0491010:CDS | 45.0% | |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3_4:13023960-13023979 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3_4:13023961-13023980 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3_4:13023962-13023981 | None:intergenic | 45.0% |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3_4:13023992-13024011 | Msa0491010:intron | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3_4:13023997-13024016 | Msa0491010:intron | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3_4:13024001-13024020 | None:intergenic | 45.0% | |
| CAAGCCTAACTGCAGCATAA+AGG | - | chr3_4:13024159-13024178 | None:intergenic | 45.0% | |
| TGTCGCAGGTCACATATTGA+TGG | - | chr3_4:13024267-13024286 | None:intergenic | 45.0% | |
| !! | AATTGCTGGCTTCATGTGTG+CGG | - | chr3_4:13024333-13024352 | None:intergenic | 45.0% |
| AATTGCTTCGGGTGAATTGC+TGG | - | chr3_4:13024347-13024366 | None:intergenic | 45.0% | |
| ! | ATGCCAATGTATGATGGAGG+AGG | - | chr3_4:13024417-13024436 | None:intergenic | 45.0% |
| GCAATGCCAATGTATGATGG+AGG | - | chr3_4:13024420-13024439 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3_4:13024547-13024566 | Msa0491010:CDS | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3_4:13024562-13024581 | Msa0491010:CDS | 45.0% | |
| GGTTTCCTAATTGTGGGATG+AGG | + | chr3_4:13024569-13024588 | Msa0491010:CDS | 45.0% | |
| GCAAACCTCATCCCACAATT+AGG | - | chr3_4:13024577-13024596 | None:intergenic | 45.0% | |
| CAAGGACGGACAACTTACAA+GGG | - | chr3_4:13024650-13024669 | None:intergenic | 45.0% | |
| ACAAGGACGGACAACTTACA+AGG | - | chr3_4:13024651-13024670 | None:intergenic | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3_4:13024794-13024813 | Msa0491010:CDS | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3_4:13024795-13024814 | Msa0491010:CDS | 45.0% | |
| !!! | TTTTTTTATATATATAAATG+AGG | + | chr3_4:13025061-13025080 | Msa0491010:three_prime_UTR | 5.0% |
| ACTGAACCTCAATCAGAGGG+TGG | + | chr3_4:13022814-13022833 | Msa0491010:CDS | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr3_4:13023215-13023234 | Msa0491010:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | + | chr3_4:13023216-13023235 | Msa0491010:intron | 50.0% | |
| !! | GGCCTTGGTGGATTAGTATC+AGG | + | chr3_4:13023574-13023593 | Msa0491010:intron | 50.0% |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3_4:13023608-13023627 | None:intergenic | 50.0% | |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3_4:13023605-13023624 | Msa0491010:intron | 50.0% | |
| ! | GCAGGTCACATATTGATGGC+AGG | - | chr3_4:13024263-13024282 | None:intergenic | 50.0% |
| TATGTGACCTGCGACACTTG+TGG | + | chr3_4:13024271-13024290 | Msa0491010:CDS | 50.0% | |
| ATGTGACCTGCGACACTTGT+GGG | + | chr3_4:13024272-13024291 | Msa0491010:CDS | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3_4:13024796-13024815 | Msa0491010:CDS | 50.0% | |
| GCGTAATGCCTCGCGCATAT+TGG | - | chr3_4:13023552-13023571 | None:intergenic | 55.0% | |
| ! | TATGCGCGAGGCATTACGCT+TGG | + | chr3_4:13023553-13023572 | Msa0491010:intron | 55.0% |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3_4:13023950-13023969 | Msa0491010:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3_4:13024187-13024206 | Msa0491010:CDS | 55.0% | |
| ! | CTTAGTCCCACAAGTGTCGC+AGG | - | chr3_4:13024281-13024300 | None:intergenic | 55.0% |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3_4:13024814-13024833 | None:intergenic | 55.0% | |
| ! | CGAGGCATTACGCTTGGCCT+TGG | + | chr3_4:13023559-13023578 | Msa0491010:intron | 60.0% |
| !! | GGCATTACGCTTGGCCTTGG+TGG | + | chr3_4:13023562-13023581 | Msa0491010:intron | 60.0% |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3_4:13024799-13024818 | Msa0491010:CDS | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3_4:13024800-13024819 | Msa0491010:CDS | 60.0% | |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3_4:13024801-13024820 | Msa0491010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13022156 | 13025100 | 13022156 | ID=Msa0491010;Name=Msa0491010 |
| chr3_4 | mRNA | 13022156 | 13025100 | 13022156 | ID=Msa0491010-mRNA-1;Parent=Msa0491010;Name=Msa0491010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=108|0.8|0.83|1|0.8|0.66|6|176|332 |
| chr3_4 | exon | 13022156 | 13022392 | 13022156 | ID=Msa0491010-mRNA-1:exon:3988;Parent=Msa0491010-mRNA-1 |
| chr3_4 | exon | 13022787 | 13022924 | 13022787 | ID=Msa0491010-mRNA-1:exon:3989;Parent=Msa0491010-mRNA-1 |
| chr3_4 | exon | 13023773 | 13023971 | 13023773 | ID=Msa0491010-mRNA-1:exon:3990;Parent=Msa0491010-mRNA-1 |
| chr3_4 | exon | 13024170 | 13024405 | 13024170 | ID=Msa0491010-mRNA-1:exon:3991;Parent=Msa0491010-mRNA-1 |
| chr3_4 | exon | 13024508 | 13024651 | 13024508 | ID=Msa0491010-mRNA-1:exon:3992;Parent=Msa0491010-mRNA-1 |
| chr3_4 | exon | 13024772 | 13025100 | 13024772 | ID=Msa0491010-mRNA-1:exon:3993;Parent=Msa0491010-mRNA-1 |
| chr3_4 | five_prime_UTR | 13022156 | 13022263 | 13022156 | ID=Msa0491010-mRNA-1:five_prime_utr;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13022264 | 13022392 | 13022264 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13022787 | 13022924 | 13022787 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13023773 | 13023971 | 13023773 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13024170 | 13024405 | 13024170 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13024508 | 13024651 | 13024508 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | CDS | 13024772 | 13024924 | 13024772 | ID=Msa0491010-mRNA-1:cds;Parent=Msa0491010-mRNA-1 |
| chr3_4 | three_prime_UTR | 13024925 | 13025100 | 13024925 | ID=Msa0491010-mRNA-1:three_prime_utr;Parent=Msa0491010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
