Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491280 | QDW65496.1 | 99.658 | 292 | 1 | 0 | 1 | 292 | 1 | 292 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491280 | sp|A0JPP1|NC2A_RAT | 49.558 | 113 | 55 | 2 | 2 | 114 | 5 | 115 | 2.51e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491280 | A0A5B8GTQ9 | 99.658 | 292 | 1 | 0 | 1 | 292 | 1 | 292 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0491280 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491280 | MtrunA17_Chr3g0081161 | 98.288 | 292 | 5 | 0 | 1 | 292 | 1 | 292 | 0.0 | 594 |
| Msa0491280 | MtrunA17_Chr8g0354151 | 68.581 | 296 | 75 | 7 | 1 | 280 | 1 | 294 | 2.77e-123 | 354 |
| Msa0491280 | MtrunA17_Chr5g0441241 | 50.714 | 280 | 113 | 8 | 18 | 279 | 1 | 273 | 7.94e-54 | 176 |
| Msa0491280 | MtrunA17_Chr5g0420401 | 84.270 | 89 | 14 | 0 | 171 | 259 | 51 | 139 | 3.67e-47 | 155 |
| Msa0491280 | MtrunA17_Chr2g0288481 | 40.449 | 89 | 50 | 1 | 1 | 86 | 75 | 163 | 2.08e-12 | 65.5 |
| Msa0491280 | MtrunA17_Chr3g0132191 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 5.33e-12 | 63.9 |
| Msa0491280 | MtrunA17_Chr1g0191681 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 5.83e-12 | 64.7 |
| Msa0491280 | MtrunA17_Chr7g0272991 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 8.26e-12 | 64.3 |
| Msa0491280 | MtrunA17_Chr2g0310741 | 41.026 | 78 | 46 | 0 | 9 | 86 | 104 | 181 | 5.71e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491280 | AT3G12480.1 | 52.203 | 295 | 113 | 10 | 1 | 280 | 1 | 282 | 4.89e-78 | 239 |
| Msa0491280 | AT5G19490.1 | 44.108 | 297 | 121 | 11 | 1 | 290 | 1 | 259 | 4.34e-52 | 172 |
| Msa0491280 | AT1G54830.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.83e-12 | 65.1 |
| Msa0491280 | AT1G54830.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.83e-12 | 65.1 |
| Msa0491280 | AT1G54830.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.83e-12 | 65.1 |
| Msa0491280 | AT1G08970.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.17e-12 | 64.3 |
| Msa0491280 | AT1G08970.4 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.17e-12 | 64.3 |
| Msa0491280 | AT1G08970.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.17e-12 | 64.3 |
| Msa0491280 | AT1G08970.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.17e-12 | 64.3 |
| Msa0491280 | AT5G63470.2 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.23e-12 | 64.3 |
| Msa0491280 | AT5G63470.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.23e-12 | 64.3 |
| Msa0491280 | AT3G48590.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 65 | 143 | 8.86e-12 | 63.9 |
| Msa0491280 | AT1G56170.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.95e-11 | 62.4 |
| Msa0491280 | AT1G56170.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.95e-11 | 62.4 |
Find 109 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTACATGATTTACTTCT+TGG | 0.159971 | 3_4:+13588025 | Msa0491280:three_prime_UTR |
| TCTTCTTCATGGCATCAAAT+TGG | 0.205765 | 3_4:-13583519 | None:intergenic |
| CCATTATCTATTGCCATACT+TGG | 0.281670 | 3_4:-13587519 | None:intergenic |
| TTGCAGCAGGTTCAGGCAAT+GGG | 0.296714 | 3_4:-13587683 | None:intergenic |
| TTTCATGTAAGTTGGCATTC+AGG | 0.299510 | 3_4:-13587617 | None:intergenic |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3_4:+13587387 | Msa0491280:CDS |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3_4:-13586361 | None:intergenic |
| GGTATCAAGCTTCTTCTTCA+TGG | 0.333154 | 3_4:-13583530 | None:intergenic |
| TTGCAGCAAACCTTGGTAAT+AGG | 0.333492 | 3_4:+13587784 | Msa0491280:CDS |
| CTTCTTCATGGCATCAAATT+GGG | 0.333930 | 3_4:-13583518 | None:intergenic |
| GATTTACTTCTTGGTAAAGT+TGG | 0.341511 | 3_4:+13588034 | Msa0491280:three_prime_UTR |
| GAGTCATGATTTCCACCTTA+AGG | 0.342418 | 3_4:-13587855 | None:intergenic |
| CCTACGAAGTGTCGATTTGC+CGG | 0.344437 | 3_4:-13583394 | None:intergenic |
| GGACATGGCCATTCTGAGGC+TGG | 0.349144 | 3_4:+13586958 | Msa0491280:CDS |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3_4:-13587000 | None:intergenic |
| ATCTATTGCCATACTTGGAT+TGG | 0.365176 | 3_4:-13587514 | None:intergenic |
| TCTATTGCCATACTTGGATT+GGG | 0.367608 | 3_4:-13587513 | None:intergenic |
| AGAGGCTAAGCGGAGTAAAA+TGG | 0.373594 | 3_4:+13587138 | Msa0491280:CDS |
| TAAATGGATATTGTTGTTGT+AGG | 0.378021 | 3_4:+13587988 | Msa0491280:three_prime_UTR |
| TGGCATTCAGGTCAATGTTT+CGG | 0.380240 | 3_4:-13587605 | None:intergenic |
| ACTCGTACGAACGCATATTC+CGG | 0.387293 | 3_4:+13583375 | Msa0491280:five_prime_UTR |
| CCAAGTATGGCAATAGATAA+TGG | 0.389197 | 3_4:+13587519 | Msa0491280:CDS |
| TCTGTTGTTGCAGCAGGTTC+AGG | 0.395311 | 3_4:-13587690 | None:intergenic |
| GACATGGCCATTCTGAGGCT+GGG | 0.396129 | 3_4:+13586959 | Msa0491280:CDS |
| ATTTACTTCTTGGTAAAGTT+GGG | 0.399093 | 3_4:+13588035 | Msa0491280:three_prime_UTR |
| ATCAAATTGGGAAATTGAAC+AGG | 0.410904 | 3_4:-13583506 | None:intergenic |
| GTAGAGTTATTTCATAAGTT+CGG | 0.415756 | 3_4:-13586323 | None:intergenic |
| AGACGTCCCCAATCCAAGTA+TGG | 0.420572 | 3_4:+13587506 | Msa0491280:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.421254 | 3_4:-13586180 | None:intergenic |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3_4:+13587405 | Msa0491280:CDS |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3_4:-13587451 | None:intergenic |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3_4:+13587393 | Msa0491280:CDS |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3_4:+13587345 | Msa0491280:intron |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3_4:+13587368 | Msa0491280:CDS |
| GAAGAGTAGCTAACACCTTA+AGG | 0.446150 | 3_4:+13587840 | Msa0491280:exon |
| GTTGCAGCAGGTTCAGGCAA+TGG | 0.446498 | 3_4:-13587684 | None:intergenic |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3_4:+13587363 | Msa0491280:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3_4:+13587375 | Msa0491280:CDS |
| AAAACTTACAGCAGGGAAAC+GGG | 0.451379 | 3_4:-13583551 | None:intergenic |
| TGCATATCTGTTGTTGCAGC+AGG | 0.454294 | 3_4:-13587696 | None:intergenic |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3_4:+13587714 | Msa0491280:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3_4:+13587344 | Msa0491280:intron |
| TTTAAGATACTGTCTGTCAA+TGG | 0.460198 | 3_4:+13588085 | Msa0491280:three_prime_UTR |
| AAAACAACAATGAAACCAAC+TGG | 0.460380 | 3_4:-13588061 | None:intergenic |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3_4:+13587381 | Msa0491280:CDS |
| TTTCTGTCCCACACTACCTT+CGG | 0.475603 | 3_4:+13583417 | Msa0491280:five_prime_UTR |
| ACATGGCCATTCTGAGGCTG+GGG | 0.478857 | 3_4:+13586960 | Msa0491280:CDS |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3_4:+13587399 | Msa0491280:CDS |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3_4:+13587443 | Msa0491280:CDS |
| CACAAGGTCATTGGTATACC+AGG | 0.499756 | 3_4:-13587911 | None:intergenic |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3_4:+13587367 | Msa0491280:CDS |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3_4:+13587369 | Msa0491280:CDS |
| TAATAGGCTAGATGAGGATG+AGG | 0.506471 | 3_4:+13587800 | Msa0491280:CDS |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3_4:+13587406 | Msa0491280:CDS |
| GGTAAAGTTGGGTTACCAGT+TGG | 0.509924 | 3_4:+13588046 | Msa0491280:three_prime_UTR |
| CCATGTCCATGGCTATAGTC+AGG | 0.515058 | 3_4:-13586943 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3_4:+13587777 | Msa0491280:CDS |
| TGAGGAAGATTATGATGAGG+AGG | 0.517959 | 3_4:+13587818 | Msa0491280:CDS |
| GGAAATTTGAAAGCAAAGGA+AGG | 0.521410 | 3_4:-13583462 | None:intergenic |
| ATGCAAGCAGATGAGGATGT+TGG | 0.535775 | 3_4:+13586138 | Msa0491280:CDS |
| TGGGAAATTGAACAGGAAGA+AGG | 0.535990 | 3_4:-13583499 | None:intergenic |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3_4:-13587743 | None:intergenic |
| TAGTATCTACACAAGGTCAT+TGG | 0.541634 | 3_4:-13587920 | None:intergenic |
| GAAGGGAAATTTGAAAGCAA+AGG | 0.546958 | 3_4:-13583466 | None:intergenic |
| CATCAGCCCCAGCCTCAGAA+TGG | 0.550548 | 3_4:-13586966 | None:intergenic |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3_4:+13587380 | Msa0491280:CDS |
| CCGGCAAATCGACACTTCGT+AGG | 0.550850 | 3_4:+13583394 | Msa0491280:five_prime_UTR |
| CCTTTCTGATGTCGACAAGA+TGG | 0.553095 | 3_4:+13587743 | Msa0491280:CDS |
| GAAATTTGAAAGCAAAGGAA+GGG | 0.553628 | 3_4:-13583461 | None:intergenic |
| CTATTGCCATACTTGGATTG+GGG | 0.558026 | 3_4:-13587512 | None:intergenic |
| TCAGGCAATGGGGCCTGAGT+AGG | 0.561825 | 3_4:-13587672 | None:intergenic |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3_4:+13587354 | Msa0491280:intron |
| CATCTTGTCGACATCAGAAA+GGG | 0.564046 | 3_4:-13587742 | None:intergenic |
| GAAGATAATGCAAGCAGATG+AGG | 0.565858 | 3_4:+13586131 | Msa0491280:CDS |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3_4:+13587407 | Msa0491280:CDS |
| CCTCAGAATGGCCATGTCCA+TGG | 0.574358 | 3_4:-13586954 | None:intergenic |
| GGATGAGGAAGATTATGATG+AGG | 0.581721 | 3_4:+13587815 | Msa0491280:CDS |
| CCTCATCTAGCCTATTACCA+AGG | 0.583547 | 3_4:-13587794 | None:intergenic |
| TGATGTGATGTAAGATCCGA+AGG | 0.583761 | 3_4:-13583433 | None:intergenic |
| ATGTTTACCAGGAAAGCTGC+TGG | 0.583874 | 3_4:+13587091 | Msa0491280:intron |
| TGTAAGATCCGAAGGTAGTG+TGG | 0.584836 | 3_4:-13583425 | None:intergenic |
| TTGTAATGACAGCGATGAAG+AGG | 0.584902 | 3_4:+13587120 | Msa0491280:CDS |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3_4:+13586918 | Msa0491280:CDS |
| AGATAATGGTTCAGAACCAA+GGG | 0.587090 | 3_4:+13587533 | Msa0491280:CDS |
| TAGATAATGGTTCAGAACCA+AGG | 0.587959 | 3_4:+13587532 | Msa0491280:CDS |
| TTCGAACCTTCTCTTTGGAA+CGG | 0.592528 | 3_4:-13586995 | None:intergenic |
| AGAACCAAGGGAGTTATCAA+AGG | 0.594821 | 3_4:+13587545 | Msa0491280:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3_4:-13587732 | None:intergenic |
| ATCGCGCCGTTCCAAAGAGA+AGG | 0.600860 | 3_4:+13586989 | Msa0491280:CDS |
| AAATTTGAAAGCAAAGGAAG+GGG | 0.601376 | 3_4:-13583460 | None:intergenic |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3_4:+13587379 | Msa0491280:CDS |
| TGCAGCAGGTTCAGGCAATG+GGG | 0.603402 | 3_4:-13587682 | None:intergenic |
| CCTGACTATAGCCATGGACA+TGG | 0.613541 | 3_4:+13586943 | Msa0491280:CDS |
| CCATGGACATGGCCATTCTG+AGG | 0.616486 | 3_4:+13586954 | Msa0491280:CDS |
| CCTTGGTAATAGGCTAGATG+AGG | 0.626019 | 3_4:+13587794 | Msa0491280:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3_4:+13587357 | Msa0491280:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3_4:-13587477 | None:intergenic |
| GAAAATATTGCAGCTCACGA+AGG | 0.630972 | 3_4:+13587567 | Msa0491280:CDS |
| AGGGTTCCTGACTATAGCCA+TGG | 0.631288 | 3_4:+13586937 | Msa0491280:CDS |
| GTAAGATCCGAAGGTAGTGT+GGG | 0.633991 | 3_4:-13583424 | None:intergenic |
| GAGTAGCTAACACCTTAAGG+TGG | 0.636532 | 3_4:+13587843 | Msa0491280:exon |
| AAGCACGGATATACCTACTC+AGG | 0.637338 | 3_4:+13587659 | Msa0491280:CDS |
| GGATGTTGGAAAGATAGCAC+TGG | 0.638767 | 3_4:+13586152 | Msa0491280:CDS |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3_4:+13587718 | Msa0491280:CDS |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3_4:-13587416 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3_4:-13587368 | None:intergenic |
| CATTTGCTAGTATCTACACA+AGG | 0.680194 | 3_4:-13587927 | None:intergenic |
| ACAGCGATGAAGAGGCTAAG+CGG | 0.705575 | 3_4:+13587128 | Msa0491280:CDS |
| TATGAAATAACTCTACAGAG+AGG | 0.722734 | 3_4:+13586330 | Msa0491280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTATAATTTGAAATATAT+AGG | + | chr3_4:13584636-13584655 | Msa0491280:intron | 10.0% |
| !!! | TTATTTCTTAGTTAAATTTT+GGG | + | chr3_4:13586208-13586227 | Msa0491280:intron | 10.0% |
| !!! | AATTATAAAATAAGTGATTT+TGG | + | chr3_4:13586659-13586678 | Msa0491280:intron | 10.0% |
| !!! | AATTGAGCTTTTTTTAATTT+TGG | + | chr3_4:13583668-13583687 | Msa0491280:intron | 15.0% |
| !!! | TGATGATAAATTGATAATTT+AGG | + | chr3_4:13583693-13583712 | Msa0491280:intron | 15.0% |
| !!! | GATGATAAATTGATAATTTA+GGG | + | chr3_4:13583694-13583713 | Msa0491280:intron | 15.0% |
| !!! | TTGAACTTTGTTTATTTATT+TGG | + | chr3_4:13584034-13584053 | Msa0491280:intron | 15.0% |
| !!! | TGAACTTTGTTTATTTATTT+GGG | + | chr3_4:13584035-13584054 | Msa0491280:intron | 15.0% |
| !! | CTTAAATAGATTATTTGTAA+AGG | - | chr3_4:13586048-13586067 | None:intergenic | 15.0% |
| !!! | GTTATTTCTTAGTTAAATTT+TGG | + | chr3_4:13586207-13586226 | Msa0491280:intron | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | + | chr3_4:13586398-13586417 | Msa0491280:intron | 15.0% |
| !! | ATTTGAACTTATCATTAAAA+GGG | - | chr3_4:13587170-13587189 | None:intergenic | 15.0% |
| !! | TATTTGAACTTATCATTAAA+AGG | - | chr3_4:13587171-13587190 | None:intergenic | 15.0% |
| !! | GTATCTTCTCAAATTATTAT+CGG | - | chr3_4:13584431-13584450 | None:intergenic | 20.0% |
| !! | ATTGTCCTATTAGAAAAATT+AGG | + | chr3_4:13584751-13584770 | Msa0491280:intron | 20.0% |
| !! | TTAGATTTCACAAAACTAAA+GGG | - | chr3_4:13585092-13585111 | None:intergenic | 20.0% |
| !! | TTTAGATTTCACAAAACTAA+AGG | - | chr3_4:13585093-13585112 | None:intergenic | 20.0% |
| !! | TGTGATAAAAAATAATGTTC+TGG | - | chr3_4:13585259-13585278 | None:intergenic | 20.0% |
| !!! | GAACATTATTTTTTATCACA+AGG | + | chr3_4:13585259-13585278 | Msa0491280:intron | 20.0% |
| !!! | ATTTTTTATCACAAGGTTAT+AGG | + | chr3_4:13585266-13585285 | Msa0491280:intron | 20.0% |
| !! | TAATCATAAATGTATCCAAT+AGG | - | chr3_4:13585620-13585639 | None:intergenic | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | + | chr3_4:13586483-13586502 | Msa0491280:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | - | chr3_4:13586649-13586668 | None:intergenic | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | - | chr3_4:13587023-13587042 | None:intergenic | 20.0% |
| !! | AAGAAGGTAACAATTTTGAA+GGG | - | chr3_4:13583486-13583505 | None:intergenic | 25.0% |
| !! | AATTGATAATTTAGGGTTTC+TGG | + | chr3_4:13583701-13583720 | Msa0491280:intron | 25.0% |
| !! | ATTGATAATTTAGGGTTTCT+GGG | + | chr3_4:13583702-13583721 | Msa0491280:intron | 25.0% |
| ! | GTATCTACGCAAATTATTAT+CGG | - | chr3_4:13583859-13583878 | None:intergenic | 25.0% |
| !! | TATTTGGGTTTGATGATAAT+AGG | + | chr3_4:13584050-13584069 | Msa0491280:intron | 25.0% |
| !! | ATTTGGGTTTGATGATAATA+GGG | + | chr3_4:13584051-13584070 | Msa0491280:intron | 25.0% |
| !! | GGAATTTTTGTATGATTCAT+AGG | + | chr3_4:13584126-13584145 | Msa0491280:intron | 25.0% |
| !! | TTAGGTTTGATGATAATTGA+GGG | + | chr3_4:13584300-13584319 | Msa0491280:intron | 25.0% |
| ! | TGGAATTTAGTATGATTCAT+AGG | + | chr3_4:13584347-13584366 | Msa0491280:intron | 25.0% |
| ! | TGGAATTTAGTAAAGTTCAT+AGG | + | chr3_4:13584595-13584614 | Msa0491280:intron | 25.0% |
| !! | TCTGTCCTAATTTTTCTAAT+AGG | - | chr3_4:13584759-13584778 | None:intergenic | 25.0% |
| !! | AAACAAGTATTGTCAAATAG+CGG | - | chr3_4:13584811-13584830 | None:intergenic | 25.0% |
| ! | TGTTAGTATCAAAATAAGTG+AGG | + | chr3_4:13584876-13584895 | Msa0491280:intron | 25.0% |
| ! | ATTAGGATAATTCAAATGGA+AGG | - | chr3_4:13584972-13584991 | None:intergenic | 25.0% |
| ! | TAGATTTCACAAAACTAAAG+GGG | - | chr3_4:13585091-13585110 | None:intergenic | 25.0% |
| ! | AATTGGGATAATATGGAAAA+CGG | - | chr3_4:13585312-13585331 | None:intergenic | 25.0% |
| ! | TTCAAGTAATTGGGATAATA+TGG | - | chr3_4:13585319-13585338 | None:intergenic | 25.0% |
| ! | AAATAATGTAATCAGAGAGA+TGG | + | chr3_4:13585383-13585402 | Msa0491280:intron | 25.0% |
| ! | TTTCATATATGGATAACTGT+AGG | - | chr3_4:13585580-13585599 | None:intergenic | 25.0% |
| !! | CAATGCAATCTTTTCATATA+TGG | - | chr3_4:13585591-13585610 | None:intergenic | 25.0% |
| ! | ATAAATGTATCCAATAGGTT+TGG | - | chr3_4:13585615-13585634 | None:intergenic | 25.0% |
| ! | GATTTAATTCTGTAGCAAAA+TGG | + | chr3_4:13585722-13585741 | Msa0491280:intron | 25.0% |
| ! | AAAAACTATTCCACAAAACA+TGG | - | chr3_4:13585752-13585771 | None:intergenic | 25.0% |
| ! | AAGCTACTCAATATATCAAA+AGG | - | chr3_4:13585785-13585804 | None:intergenic | 25.0% |
| !!! | TCATGAAAACATTAATTTGC+AGG | + | chr3_4:13586098-13586117 | Msa0491280:intron | 25.0% |
| !! | GTAGAGTTATTTCATAAGTT+CGG | - | chr3_4:13586326-13586345 | None:intergenic | 25.0% |
| !! | AATTTTCCGAAAACTCTATT+CGG | - | chr3_4:13586616-13586635 | None:intergenic | 25.0% |
| ! | ATAGATGCTTATGAATAAAG+AGG | - | chr3_4:13587209-13587228 | None:intergenic | 25.0% |
| ! | AGCATCTATAACCTTATAAT+TGG | + | chr3_4:13587220-13587239 | Msa0491280:intron | 25.0% |
| ! | GCATCTATAACCTTATAATT+GGG | + | chr3_4:13587221-13587240 | Msa0491280:intron | 25.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | - | chr3_4:13587234-13587253 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAGAAAGTAGA+AGG | + | chr3_4:13587266-13587285 | Msa0491280:intron | 25.0% |
| !!! | ATTTAGTTTCACCACTTTTT+AGG | + | chr3_4:13587962-13587981 | Msa0491280:three_prime_UTR | 25.0% |
| !!! | TTTAGTTTCACCACTTTTTA+GGG | + | chr3_4:13587963-13587982 | Msa0491280:three_prime_UTR | 25.0% |
| !! | TAAATGGATATTGTTGTTGT+AGG | + | chr3_4:13587988-13588007 | Msa0491280:three_prime_UTR | 25.0% |
| ! | ATTTACTTCTTGGTAAAGTT+GGG | + | chr3_4:13588035-13588054 | Msa0491280:three_prime_UTR | 25.0% |
| AAATTTGAAAGCAAAGGAAG+GGG | - | chr3_4:13583463-13583482 | None:intergenic | 30.0% | |
| GAAATTTGAAAGCAAAGGAA+GGG | - | chr3_4:13583464-13583483 | None:intergenic | 30.0% | |
| ! | GAAGAAGGTAACAATTTTGA+AGG | - | chr3_4:13583487-13583506 | None:intergenic | 30.0% |
| ATCAAATTGGGAAATTGAAC+AGG | - | chr3_4:13583509-13583528 | None:intergenic | 30.0% | |
| ! | TTGATGATAATAGGGTTTCT+AGG | + | chr3_4:13584059-13584078 | Msa0491280:intron | 30.0% |
| TATAATGACATGTGTCAATG+TGG | + | chr3_4:13584233-13584252 | Msa0491280:intron | 30.0% | |
| ! | CTTAGGTTTGATGATAATTG+AGG | + | chr3_4:13584299-13584318 | Msa0491280:intron | 30.0% |
| TCAATTGAGCTTTGCTTATT+TGG | + | chr3_4:13584502-13584521 | Msa0491280:intron | 30.0% | |
| CAATTGAGCTTTGCTTATTT+GGG | + | chr3_4:13584503-13584522 | Msa0491280:intron | 30.0% | |
| ! | TTTGGGTTTGATGATAATTG+AGG | + | chr3_4:13584520-13584539 | Msa0491280:intron | 30.0% |
| ! | TTGGGTTTGATGATAATTGA+GGG | + | chr3_4:13584521-13584540 | Msa0491280:intron | 30.0% |
| AATACTTGTTTAAGCCTTCT+TGG | + | chr3_4:13584820-13584839 | Msa0491280:intron | 30.0% | |
| TAAGTGAGGAATGTATTCAT+TGG | + | chr3_4:13584890-13584909 | Msa0491280:intron | 30.0% | |
| AAGTGAGGAATGTATTCATT+GGG | + | chr3_4:13584891-13584910 | Msa0491280:intron | 30.0% | |
| ! | TTACGATGGGTATGTTTTAT+TGG | + | chr3_4:13584928-13584947 | Msa0491280:intron | 30.0% |
| !! | TACGATGGGTATGTTTTATT+GGG | + | chr3_4:13584929-13584948 | Msa0491280:intron | 30.0% |
| GAGCATTAGGATAATTCAAA+TGG | - | chr3_4:13584976-13584995 | None:intergenic | 30.0% | |
| TTTGAATTATCCTAATGCTC+TGG | + | chr3_4:13584976-13584995 | Msa0491280:intron | 30.0% | |
| ATTGGGATAATATGGAAAAC+GGG | - | chr3_4:13585311-13585330 | None:intergenic | 30.0% | |
| AAGCTTCACTTCAAGTAATT+GGG | - | chr3_4:13585328-13585347 | None:intergenic | 30.0% | |
| CTTCTATAACCATCTTCATT+CGG | - | chr3_4:13585419-13585438 | None:intergenic | 30.0% | |
| ! | CTGAAGTCTTTTATAAGTGT+AGG | + | chr3_4:13585455-13585474 | Msa0491280:intron | 30.0% |
| GATACATTTATGATTACACC+TGG | + | chr3_4:13585624-13585643 | Msa0491280:intron | 30.0% | |
| TAACAAAGAGGAAAGAATGA+AGG | - | chr3_4:13585686-13585705 | None:intergenic | 30.0% | |
| CATAGAACACTTTAACAAAG+AGG | - | chr3_4:13585698-13585717 | None:intergenic | 30.0% | |
| GACAATACTTTGTACTAGAT+CGG | - | chr3_4:13585926-13585945 | None:intergenic | 30.0% | |
| !! | AAAACATTAATTTGCAGGCT+CGG | + | chr3_4:13586103-13586122 | Msa0491280:intron | 30.0% |
| TATGAAATAACTCTACAGAG+AGG | + | chr3_4:13586330-13586349 | Msa0491280:CDS | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | - | chr3_4:13586364-13586383 | None:intergenic | 30.0% | |
| ! | ACCCTAAATGTAAAGCATTT+GGG | + | chr3_4:13586574-13586593 | Msa0491280:intron | 30.0% |
| ACCCAAATGCTTTACATTTA+GGG | - | chr3_4:13586578-13586597 | None:intergenic | 30.0% | |
| AACCCAAATGCTTTACATTT+AGG | - | chr3_4:13586579-13586598 | None:intergenic | 30.0% | |
| ! | ATATCTCCGAATAGAGTTTT+CGG | + | chr3_4:13586607-13586626 | Msa0491280:intron | 30.0% |
| ! | GTTTTCGGAAAATTTACTGT+CGG | + | chr3_4:13586622-13586641 | Msa0491280:intron | 30.0% |
| ! | TTTTCGGAAAATTTACTGTC+GGG | + | chr3_4:13586623-13586642 | Msa0491280:intron | 30.0% |
| ! | TATCTAAAATCTGCTTCGAA+TGG | - | chr3_4:13586800-13586819 | None:intergenic | 30.0% |
| TTCCTGGTAAACATTCTTAA+CGG | - | chr3_4:13587085-13587104 | None:intergenic | 30.0% | |
| GAACAAAAACAATACAAGCA+CGG | + | chr3_4:13587644-13587663 | Msa0491280:CDS | 30.0% | |
| ATACCAGGCAAAGAAAAAAA+GGG | - | chr3_4:13587899-13587918 | None:intergenic | 30.0% | |
| TATACCAGGCAAAGAAAAAA+AGG | - | chr3_4:13587900-13587919 | None:intergenic | 30.0% | |
| !!! | ACCACTTTTTAGGGTTTAAA+TGG | + | chr3_4:13587972-13587991 | Msa0491280:three_prime_UTR | 30.0% |
| TCCATTTAAACCCTAAAAAG+TGG | - | chr3_4:13587976-13587995 | None:intergenic | 30.0% | |
| CTAGTACATGATTTACTTCT+TGG | + | chr3_4:13588025-13588044 | Msa0491280:three_prime_UTR | 30.0% | |
| GATTTACTTCTTGGTAAAGT+TGG | + | chr3_4:13588034-13588053 | Msa0491280:three_prime_UTR | 30.0% | |
| AAAACAACAATGAAACCAAC+TGG | - | chr3_4:13588064-13588083 | None:intergenic | 30.0% | |
| ! | TTTAAGATACTGTCTGTCAA+TGG | + | chr3_4:13588085-13588104 | Msa0491280:three_prime_UTR | 30.0% |
| GGAAATTTGAAAGCAAAGGA+AGG | - | chr3_4:13583465-13583484 | None:intergenic | 35.0% | |
| GAAGGGAAATTTGAAAGCAA+AGG | - | chr3_4:13583469-13583488 | None:intergenic | 35.0% | |
| CTTCTTCATGGCATCAAATT+GGG | - | chr3_4:13583521-13583540 | None:intergenic | 35.0% | |
| TCTTCTTCATGGCATCAAAT+TGG | - | chr3_4:13583522-13583541 | None:intergenic | 35.0% | |
| AAAAACTTACAGCAGGGAAA+CGG | - | chr3_4:13583555-13583574 | None:intergenic | 35.0% | |
| AGCAGAAAAAACTTACAGCA+GGG | - | chr3_4:13583561-13583580 | None:intergenic | 35.0% | |
| AAGCAGAAAAAACTTACAGC+AGG | - | chr3_4:13583562-13583581 | None:intergenic | 35.0% | |
| ! | ATAATAGGGTTTCTAGGTTG+TGG | + | chr3_4:13584065-13584084 | Msa0491280:intron | 35.0% |
| ! | TAATAGGGTTTCTAGGTTGT+GGG | + | chr3_4:13584066-13584085 | Msa0491280:intron | 35.0% |
| CTAAGTAACCAAAGCTCAAT+TGG | - | chr3_4:13584284-13584303 | None:intergenic | 35.0% | |
| ! | CAATTGAGCTTTGGTTACTT+AGG | + | chr3_4:13584282-13584301 | Msa0491280:intron | 35.0% |
| TAATTGAGGGTTACTAGTTG+TGG | + | chr3_4:13584313-13584332 | Msa0491280:intron | 35.0% | |
| AATTGAGGGTTACTAGTTGT+GGG | + | chr3_4:13584314-13584333 | Msa0491280:intron | 35.0% | |
| AAAAACTCAGAGACCAATAC+CGG | + | chr3_4:13584385-13584404 | Msa0491280:intron | 35.0% | |
| TGATGATAATTGAGGGTTTC+TGG | + | chr3_4:13584528-13584547 | Msa0491280:intron | 35.0% | |
| GATGATAATTGAGGGTTTCT+GGG | + | chr3_4:13584529-13584548 | Msa0491280:intron | 35.0% | |
| !! | TAATGGGTTATTGATAGCAC+TGG | - | chr3_4:13584691-13584710 | None:intergenic | 35.0% |
| AGCAGATGTAGCGAAATAAT+GGG | - | chr3_4:13584707-13584726 | None:intergenic | 35.0% | |
| TAGCAGATGTAGCGAAATAA+TGG | - | chr3_4:13584708-13584727 | None:intergenic | 35.0% | |
| GAAAAATTAGGACAGAGTCA+CGG | + | chr3_4:13584763-13584782 | Msa0491280:intron | 35.0% | |
| AGTGAGGAATGTATTCATTG+GGG | + | chr3_4:13584892-13584911 | Msa0491280:intron | 35.0% | |
| ATTGGGTTAACATACCTCTT+TGG | + | chr3_4:13584946-13584965 | Msa0491280:intron | 35.0% | |
| ! | CTTCAAATTTCCAGAGCATT+AGG | - | chr3_4:13584989-13585008 | None:intergenic | 35.0% |
| AGGATCATCGAATTCACAAA+CGG | - | chr3_4:13585024-13585043 | None:intergenic | 35.0% | |
| ! | ATTCGATGATCCTTTTGTGA+TGG | + | chr3_4:13585031-13585050 | Msa0491280:intron | 35.0% |
| ! | TGATCCTTTTGTGATGGTTA+CGG | + | chr3_4:13585037-13585056 | Msa0491280:intron | 35.0% |
| ATGGTTACGGTTAGAGATAT+AGG | + | chr3_4:13585050-13585069 | Msa0491280:intron | 35.0% | |
| CAAGCTTCACTTCAAGTAAT+TGG | - | chr3_4:13585329-13585348 | None:intergenic | 35.0% | |
| ATGTAATCAGAGAGATGGAT+TGG | + | chr3_4:13585388-13585407 | Msa0491280:intron | 35.0% | |
| TTGGTTAAACCGAATGAAGA+TGG | + | chr3_4:13585407-13585426 | Msa0491280:intron | 35.0% | |
| CATATATGGATAACTGTAGG+AGG | - | chr3_4:13585577-13585596 | None:intergenic | 35.0% | |
| ! | ATTGCATTGACCAAACCTAT+TGG | + | chr3_4:13585602-13585621 | Msa0491280:intron | 35.0% |
| TTATGATTACACCTGGAGTT+CGG | + | chr3_4:13585631-13585650 | Msa0491280:intron | 35.0% | |
| TCTATAGCACTATAGTGTAG+CGG | + | chr3_4:13585877-13585896 | Msa0491280:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | - | chr3_4:13586183-13586202 | None:intergenic | 35.0% | |
| ! | TTTTCTTACAGCAAAAGCTC+TGG | + | chr3_4:13586275-13586294 | Msa0491280:intron | 35.0% |
| TGCATTGCATTTGTAAGTTG+TGG | + | chr3_4:13586368-13586387 | Msa0491280:intron | 35.0% | |
| AAGTAAAATCGGTCTATGCA+TGG | - | chr3_4:13586451-13586470 | None:intergenic | 35.0% | |
| AACACCAGCACAAGTAAAAT+CGG | - | chr3_4:13586462-13586481 | None:intergenic | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | + | chr3_4:13586513-13586532 | Msa0491280:intron | 35.0% | |
| TGATCAGTTCATACTTAGCA+TGG | - | chr3_4:13586555-13586574 | None:intergenic | 35.0% | |
| ! | CACCCTAAATGTAAAGCATT+TGG | + | chr3_4:13586573-13586592 | Msa0491280:intron | 35.0% |
| AACCGTTAAGAATGTTTACC+AGG | + | chr3_4:13587080-13587099 | Msa0491280:intron | 35.0% | |
| !! | TTTTTAGTCATGATCGATGC+TGG | + | chr3_4:13587314-13587333 | Msa0491280:intron | 35.0% |
| TGTTTGATTACAGCTTGAGT+TGG | + | chr3_4:13587344-13587363 | Msa0491280:intron | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | + | chr3_4:13587345-13587364 | Msa0491280:intron | 35.0% | |
| TCTATTGCCATACTTGGATT+GGG | - | chr3_4:13587516-13587535 | None:intergenic | 35.0% | |
| ATCTATTGCCATACTTGGAT+TGG | - | chr3_4:13587517-13587536 | None:intergenic | 35.0% | |
| CCATTATCTATTGCCATACT+TGG | - | chr3_4:13587522-13587541 | None:intergenic | 35.0% | |
| CCAAGTATGGCAATAGATAA+TGG | + | chr3_4:13587519-13587538 | Msa0491280:CDS | 35.0% | |
| ! | TAGATAATGGTTCAGAACCA+AGG | + | chr3_4:13587532-13587551 | Msa0491280:CDS | 35.0% |
| ! | AGATAATGGTTCAGAACCAA+GGG | + | chr3_4:13587533-13587552 | Msa0491280:CDS | 35.0% |
| !! | TTTTCCTTTGATAACTCCCT+TGG | - | chr3_4:13587552-13587571 | None:intergenic | 35.0% |
| ! | TTTCATGTAAGTTGGCATTC+AGG | - | chr3_4:13587620-13587639 | None:intergenic | 35.0% |
| ! | GTTCTCGTTTTCATGTAAGT+TGG | - | chr3_4:13587628-13587647 | None:intergenic | 35.0% |
| ATGCAACATGAAGAAATTCC+AGG | + | chr3_4:13587714-13587733 | Msa0491280:CDS | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | + | chr3_4:13587718-13587737 | Msa0491280:CDS | 35.0% | |
| TAGTATCTACACAAGGTCAT+TGG | - | chr3_4:13587923-13587942 | None:intergenic | 35.0% | |
| ! | CATTTGCTAGTATCTACACA+AGG | - | chr3_4:13587930-13587949 | None:intergenic | 35.0% |
| TGATGTGATGTAAGATCCGA+AGG | - | chr3_4:13583436-13583455 | None:intergenic | 40.0% | |
| TGGGAAATTGAACAGGAAGA+AGG | - | chr3_4:13583502-13583521 | None:intergenic | 40.0% | |
| GGTATCAAGCTTCTTCTTCA+TGG | - | chr3_4:13583533-13583552 | None:intergenic | 40.0% | |
| AAAACTTACAGCAGGGAAAC+GGG | - | chr3_4:13583554-13583573 | None:intergenic | 40.0% | |
| ACCCAGATGCAAAAACACAA+CGG | - | chr3_4:13583617-13583636 | None:intergenic | 40.0% | |
| ! | AATTTAGGGTTTCTGGGTTG+CGG | + | chr3_4:13583708-13583727 | Msa0491280:intron | 40.0% |
| AATTGGGTGGAATGGTATGA+TGG | + | chr3_4:13583738-13583757 | Msa0491280:intron | 40.0% | |
| ATTGGGTGGAATGGTATGAT+GGG | + | chr3_4:13583739-13583758 | Msa0491280:intron | 40.0% | |
| ! | AATAGGGTTTCTAGGTTGTG+GGG | + | chr3_4:13584067-13584086 | Msa0491280:intron | 40.0% |
| ATTGAGGGTTACTAGTTGTG+GGG | + | chr3_4:13584315-13584334 | Msa0491280:intron | 40.0% | |
| !!! | TTGGTCTCTGAGTTTTTAGC+AGG | - | chr3_4:13584382-13584401 | None:intergenic | 40.0% |
| AAAGCTCAATTGACATGTGC+GGG | - | chr3_4:13584495-13584514 | None:intergenic | 40.0% | |
| CAAAGCTCAATTGACATGTG+CGG | - | chr3_4:13584496-13584515 | None:intergenic | 40.0% | |
| ! | ATTGAGGGTTTCTGGGTTAT+CGG | + | chr3_4:13584536-13584555 | Msa0491280:intron | 40.0% |
| AATTGGGTAGAGTGGTATGT+TGG | + | chr3_4:13584565-13584584 | Msa0491280:intron | 40.0% | |
| ATTGGGTAGAGTGGTATGTT+GGG | + | chr3_4:13584566-13584585 | Msa0491280:intron | 40.0% | |
| TGCTAGCAAAACTGGAATAG+AGG | + | chr3_4:13584723-13584742 | Msa0491280:intron | 40.0% | |
| CTGTTGTTGAGCTTTACGAT+GGG | + | chr3_4:13584915-13584934 | Msa0491280:intron | 40.0% | |
| ATTCAAATGGAAGGCCAAAG+AGG | - | chr3_4:13584963-13584982 | None:intergenic | 40.0% | |
| CTAACCGTAACCATCACAAA+AGG | - | chr3_4:13585044-13585063 | None:intergenic | 40.0% | |
| GCAGTTTGCATCAGAATTTG+AGG | - | chr3_4:13585150-13585169 | None:intergenic | 40.0% | |
| GATAATATGGAAAACGGGCA+AGG | - | chr3_4:13585306-13585325 | None:intergenic | 40.0% | |
| ATATATATGACAGCAGCAGC+TGG | - | chr3_4:13585497-13585516 | None:intergenic | 40.0% | |
| TATGATTACACCTGGAGTTC+GGG | + | chr3_4:13585632-13585651 | Msa0491280:intron | 40.0% | |
| ! | AAATGGCTGACCATGTTTTG+TGG | + | chr3_4:13585739-13585758 | Msa0491280:intron | 40.0% |
| CAGAACAGTGTGATTCAACA+AGG | - | chr3_4:13585810-13585829 | None:intergenic | 40.0% | |
| ! | TCGCGGATTGTAGGAAATAA+CGG | - | chr3_4:13585984-13586003 | None:intergenic | 40.0% |
| GAAGATAATGCAAGCAGATG+AGG | + | chr3_4:13586131-13586150 | Msa0491280:CDS | 40.0% | |
| TTCTCTCATGTTGTTGACCT+CGG | + | chr3_4:13586246-13586265 | Msa0491280:intron | 40.0% | |
| CTGTAAGAAAATCAAGACCG+AGG | - | chr3_4:13586266-13586285 | None:intergenic | 40.0% | |
| CAGAAACAATTCACAGCTGA+AGG | - | chr3_4:13586427-13586446 | None:intergenic | 40.0% | |
| !! | TAGACCGATTTTACTTGTGC+TGG | + | chr3_4:13586455-13586474 | Msa0491280:intron | 40.0% |
| TTTGACCGAGAGATGAGAAT+CGG | - | chr3_4:13586521-13586540 | None:intergenic | 40.0% | |
| CTGAAATTTGTGTTCACCAC+TGG | - | chr3_4:13586862-13586881 | None:intergenic | 40.0% | |
| CAGTGGTGAACACAAATTTC+AGG | + | chr3_4:13586860-13586879 | Msa0491280:intron | 40.0% | |
| !! | TTTTGAGAGACATTGTCAGC+AGG | + | chr3_4:13586917-13586936 | Msa0491280:CDS | 40.0% |
| TTTGAGAGACATTGTCAGCA+GGG | + | chr3_4:13586918-13586937 | Msa0491280:CDS | 40.0% | |
| ! | TTCGAACCTTCTCTTTGGAA+CGG | - | chr3_4:13586998-13587017 | None:intergenic | 40.0% |
| TTGTAATGACAGCGATGAAG+AGG | + | chr3_4:13587120-13587139 | Msa0491280:CDS | 40.0% | |
| TCATGACTAAAAACTGCAGC+AGG | - | chr3_4:13587307-13587326 | None:intergenic | 40.0% | |
| AAGAGAAACCTTACATCAGC+AGG | + | chr3_4:13587443-13587462 | Msa0491280:CDS | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | - | chr3_4:13587454-13587473 | None:intergenic | 40.0% | |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | - | chr3_4:13587480-13587499 | None:intergenic | 40.0% |
| CTATTGCCATACTTGGATTG+GGG | - | chr3_4:13587515-13587534 | None:intergenic | 40.0% | |
| AGAACCAAGGGAGTTATCAA+AGG | + | chr3_4:13587545-13587564 | Msa0491280:CDS | 40.0% | |
| GAAAATATTGCAGCTCACGA+AGG | + | chr3_4:13587567-13587586 | Msa0491280:CDS | 40.0% | |
| TGGCATTCAGGTCAATGTTT+CGG | - | chr3_4:13587608-13587627 | None:intergenic | 40.0% | |
| CATCTTGTCGACATCAGAAA+GGG | - | chr3_4:13587745-13587764 | None:intergenic | 40.0% | |
| ! | TTGCAGCAAACCTTGGTAAT+AGG | + | chr3_4:13587784-13587803 | Msa0491280:CDS | 40.0% |
| TAATAGGCTAGATGAGGATG+AGG | + | chr3_4:13587800-13587819 | Msa0491280:CDS | 40.0% | |
| GGATGAGGAAGATTATGATG+AGG | + | chr3_4:13587815-13587834 | Msa0491280:CDS | 40.0% | |
| TGAGGAAGATTATGATGAGG+AGG | + | chr3_4:13587818-13587837 | Msa0491280:CDS | 40.0% | |
| GAAGAGTAGCTAACACCTTA+AGG | + | chr3_4:13587840-13587859 | Msa0491280:exon | 40.0% | |
| GAGTCATGATTTCCACCTTA+AGG | - | chr3_4:13587858-13587877 | None:intergenic | 40.0% | |
| !!! | GATCCCTTTTTTTCTTTGCC+TGG | + | chr3_4:13587893-13587912 | Msa0491280:three_prime_UTR | 40.0% |
| ACTCGTACGAACGCATATTC+CGG | + | chr3_4:13583375-13583394 | Msa0491280:five_prime_UTR | 45.0% | |
| TTTCTGTCCCACACTACCTT+CGG | + | chr3_4:13583417-13583436 | Msa0491280:five_prime_UTR | 45.0% | |
| GTAAGATCCGAAGGTAGTGT+GGG | - | chr3_4:13583427-13583446 | None:intergenic | 45.0% | |
| TGTAAGATCCGAAGGTAGTG+TGG | - | chr3_4:13583428-13583447 | None:intergenic | 45.0% | |
| !! | TGCCGTTGTGTTTTTGCATC+TGG | + | chr3_4:13583612-13583631 | Msa0491280:intron | 45.0% |
| !! | GCCGTTGTGTTTTTGCATCT+GGG | + | chr3_4:13583613-13583632 | Msa0491280:intron | 45.0% |
| ! | ATTTAGGGTTTCTGGGTTGC+GGG | + | chr3_4:13583709-13583728 | Msa0491280:intron | 45.0% |
| !! | AATGGTATGATGGGTGTGAC+TGG | + | chr3_4:13583748-13583767 | Msa0491280:intron | 45.0% |
| TACATGTGTCAGTGTCGTGT+TGG | + | chr3_4:13583894-13583913 | Msa0491280:intron | 45.0% | |
| GTCAGTGTCGTGTTGGATAT+TGG | + | chr3_4:13583901-13583920 | Msa0491280:intron | 45.0% | |
| ! | ATAGGGTTTCTAGGTTGTGG+GGG | + | chr3_4:13584068-13584087 | Msa0491280:intron | 45.0% |
| AATTGGGTAGAGTGGCATGA+TGG | + | chr3_4:13584095-13584114 | Msa0491280:intron | 45.0% | |
| ATTGGGTAGAGTGGCATGAT+GGG | + | chr3_4:13584096-13584115 | Msa0491280:intron | 45.0% | |
| CGATGTATTAGTGTCGTGAC+CGG | - | chr3_4:13584190-13584209 | None:intergenic | 45.0% | |
| GACATGTGTCAATGTGGTGT+TGG | + | chr3_4:13584239-13584258 | Msa0491280:intron | 45.0% | |
| GACATGTGCCAATTGAGCTT+TGG | + | chr3_4:13584273-13584292 | Msa0491280:intron | 45.0% | |
| GTCAATGTGACAGTTGTGAC+CGG | - | chr3_4:13584407-13584426 | None:intergenic | 45.0% | |
| TGCATGTGTCAATGTCGTGT+CGG | + | chr3_4:13584466-13584485 | Msa0491280:intron | 45.0% | |
| ! | TTGAGGGTTTCTGGGTTATC+GGG | + | chr3_4:13584537-13584556 | Msa0491280:intron | 45.0% |
| AGTGGTATGTTGGGTTTGAC+TGG | + | chr3_4:13584575-13584594 | Msa0491280:intron | 45.0% | |
| GCTACATCTGCTAGCAAAAC+TGG | + | chr3_4:13584715-13584734 | Msa0491280:intron | 45.0% | |
| TTGTCAAATAGCGGCGATAG+AGG | - | chr3_4:13584802-13584821 | None:intergenic | 45.0% | |
| !! | GTTTAAGCCTTCTTGGTGCT+TGG | + | chr3_4:13584827-13584846 | Msa0491280:intron | 45.0% |
| AAACCAACCAAGCACCAAGA+AGG | - | chr3_4:13584837-13584856 | None:intergenic | 45.0% | |
| !! | TTCTTGGTGCTTGGTTGGTT+TGG | + | chr3_4:13584836-13584855 | Msa0491280:intron | 45.0% |
| !! | TCTTGGTGCTTGGTTGGTTT+GGG | + | chr3_4:13584837-13584856 | Msa0491280:intron | 45.0% |
| GCTGTTGTTGAGCTTTACGA+TGG | + | chr3_4:13584914-13584933 | Msa0491280:intron | 45.0% | |
| TTAACCAAAACCCGAACTCC+AGG | - | chr3_4:13585645-13585664 | None:intergenic | 45.0% | |
| CACTGTTCTGCTTAGCCAAT+AGG | + | chr3_4:13585820-13585839 | Msa0491280:intron | 45.0% | |
| TTCTGCTTAGCCAATAGGAG+TGG | + | chr3_4:13585825-13585844 | Msa0491280:intron | 45.0% | |
| GACAACACTTCCACTCCTAT+TGG | - | chr3_4:13585838-13585857 | None:intergenic | 45.0% | |
| !! | GTGGAAGTGTTGTCAAACAG+TGG | + | chr3_4:13585844-13585863 | Msa0491280:intron | 45.0% |
| ! | GCACTATAGTGTAGCGGAAT+TGG | + | chr3_4:13585883-13585902 | Msa0491280:intron | 45.0% |
| ! | TGTTGTCAATCGCGGATTGT+AGG | - | chr3_4:13585993-13586012 | None:intergenic | 45.0% |
| ATGCAAGCAGATGAGGATGT+TGG | + | chr3_4:13586138-13586157 | Msa0491280:CDS | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | + | chr3_4:13586152-13586171 | Msa0491280:CDS | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | + | chr3_4:13586523-13586542 | Msa0491280:intron | 45.0% | |
| ! | TGTTCACCACTGGTTAGACT+AGG | - | chr3_4:13586852-13586871 | None:intergenic | 45.0% |
| TGGACTTCGAACCTTCTCTT+TGG | - | chr3_4:13587003-13587022 | None:intergenic | 45.0% | |
| ATGTTTACCAGGAAAGCTGC+TGG | + | chr3_4:13587091-13587110 | Msa0491280:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | + | chr3_4:13587138-13587157 | Msa0491280:CDS | 45.0% | |
| AAGCACGGATATACCTACTC+AGG | + | chr3_4:13587659-13587678 | Msa0491280:CDS | 45.0% | |
| TGCATATCTGTTGTTGCAGC+AGG | - | chr3_4:13587699-13587718 | None:intergenic | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | - | chr3_4:13587746-13587765 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | + | chr3_4:13587743-13587762 | Msa0491280:CDS | 45.0% | |
| CCTCATCTAGCCTATTACCA+AGG | - | chr3_4:13587797-13587816 | None:intergenic | 45.0% | |
| ! | CCTTGGTAATAGGCTAGATG+AGG | + | chr3_4:13587794-13587813 | Msa0491280:CDS | 45.0% |
| GAGTAGCTAACACCTTAAGG+TGG | + | chr3_4:13587843-13587862 | Msa0491280:exon | 45.0% | |
| CACAAGGTCATTGGTATACC+AGG | - | chr3_4:13587914-13587933 | None:intergenic | 45.0% | |
| GGTAAAGTTGGGTTACCAGT+TGG | + | chr3_4:13588046-13588065 | Msa0491280:three_prime_UTR | 45.0% | |
| !! | CCTACGAAGTGTCGATTTGC+CGG | - | chr3_4:13583397-13583416 | None:intergenic | 50.0% |
| ! | TTTAGGGTTTCTGGGTTGCG+GGG | + | chr3_4:13583710-13583729 | Msa0491280:intron | 50.0% |
| ! | TAGGTTGTGGGGGTGTGAAT+TGG | + | chr3_4:13584078-13584097 | Msa0491280:intron | 50.0% |
| ! | AGGTTGTGGGGGTGTGAATT+GGG | + | chr3_4:13584079-13584098 | Msa0491280:intron | 50.0% |
| ATTAGTGTCGTGACCGGTGT+CGG | - | chr3_4:13584184-13584203 | None:intergenic | 50.0% | |
| !! | GTGTCAATGTGGTGTTGGTG+TGG | + | chr3_4:13584244-13584263 | Msa0491280:intron | 50.0% |
| TAGTTGTGGGGTGGTGTGAT+TGG | + | chr3_4:13584327-13584346 | Msa0491280:intron | 50.0% | |
| GTGACAGTTGTGACCGGTAT+TGG | - | chr3_4:13584401-13584420 | None:intergenic | 50.0% | |
| ! | TGAGGGTTTCTGGGTTATCG+GGG | + | chr3_4:13584538-13584557 | Msa0491280:intron | 50.0% |
| TGGGTTATCGGGGTGTGAAT+TGG | + | chr3_4:13584548-13584567 | Msa0491280:intron | 50.0% | |
| GGGTTATCGGGGTGTGAATT+GGG | + | chr3_4:13584549-13584568 | Msa0491280:intron | 50.0% | |
| !! | AAGCCTTCTTGGTGCTTGGT+TGG | + | chr3_4:13584831-13584850 | Msa0491280:intron | 50.0% |
| !! | TACACCTGGAGTTCGGGTTT+TGG | + | chr3_4:13585638-13585657 | Msa0491280:intron | 50.0% |
| ! | CCACTGAGTGTTGTCAATCG+CGG | - | chr3_4:13586001-13586020 | None:intergenic | 50.0% |
| CGCGATTGACAACACTCAGT+GGG | + | chr3_4:13585999-13586018 | Msa0491280:intron | 50.0% | |
| GCGATTGACAACACTCAGTG+GGG | + | chr3_4:13586000-13586019 | Msa0491280:intron | 50.0% | |
| TGTGAGCCTAGTCTAACCAG+TGG | + | chr3_4:13586843-13586862 | Msa0491280:intron | 50.0% | |
| AGGGTTCCTGACTATAGCCA+TGG | + | chr3_4:13586937-13586956 | Msa0491280:CDS | 50.0% | |
| CCATGTCCATGGCTATAGTC+AGG | - | chr3_4:13586946-13586965 | None:intergenic | 50.0% | |
| CCTGACTATAGCCATGGACA+TGG | + | chr3_4:13586943-13586962 | Msa0491280:CDS | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | - | chr3_4:13587101-13587120 | None:intergenic | 50.0% | |
| ACAGCGATGAAGAGGCTAAG+CGG | + | chr3_4:13587128-13587147 | Msa0491280:CDS | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | + | chr3_4:13587380-13587399 | Msa0491280:CDS | 50.0% | |
| AGACGTCCCCAATCCAAGTA+TGG | + | chr3_4:13587506-13587525 | Msa0491280:CDS | 50.0% | |
| TTGCAGCAGGTTCAGGCAAT+GGG | - | chr3_4:13587686-13587705 | None:intergenic | 50.0% | |
| TCTGTTGTTGCAGCAGGTTC+AGG | - | chr3_4:13587693-13587712 | None:intergenic | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | - | chr3_4:13587735-13587754 | None:intergenic | 50.0% | |
| CCGGCAAATCGACACTTCGT+AGG | + | chr3_4:13583394-13583413 | Msa0491280:five_prime_UTR | 55.0% | |
| ! | TTAGGGTTTCTGGGTTGCGG+GGG | + | chr3_4:13583711-13583730 | Msa0491280:intron | 55.0% |
| GGGGTGTGAATTGGGTGGAA+TGG | + | chr3_4:13583730-13583749 | Msa0491280:intron | 55.0% | |
| ! | CGATGTGTCACTGTCGTGAC+CGG | - | chr3_4:13583833-13583852 | None:intergenic | 55.0% |
| GGGGTGTGAATTGGGTAGAG+TGG | + | chr3_4:13584087-13584106 | Msa0491280:intron | 55.0% | |
| !! | AGTGGCATGATGGGCATGAC+TGG | + | chr3_4:13584105-13584124 | Msa0491280:intron | 55.0% |
| GCTCACATAGACACCGACAC+CGG | + | chr3_4:13584168-13584187 | Msa0491280:intron | 55.0% | |
| GAGGGTTACTAGTTGTGGGG+TGG | + | chr3_4:13584318-13584337 | Msa0491280:intron | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | + | chr3_4:13584087-13584106 | Msa0491280:intron | 55.0% | |
| !! | TGGTGCTTGGTTGGTTTGGG+TGG | + | chr3_4:13584840-13584859 | Msa0491280:intron | 55.0% |
| !! | GGTGCTTGGTTGGTTTGGGT+GGG | + | chr3_4:13584841-13584860 | Msa0491280:intron | 55.0% |
| !! | GTGCTTGGTTGGTTTGGGTG+GGG | + | chr3_4:13584842-13584861 | Msa0491280:intron | 55.0% |
| CCGCGATTGACAACACTCAG+TGG | + | chr3_4:13585998-13586017 | Msa0491280:intron | 55.0% | |
| CCTCAGAATGGCCATGTCCA+TGG | - | chr3_4:13586957-13586976 | None:intergenic | 55.0% | |
| CCATGGACATGGCCATTCTG+AGG | + | chr3_4:13586954-13586973 | Msa0491280:CDS | 55.0% | |
| !! | GACATGGCCATTCTGAGGCT+GGG | + | chr3_4:13586959-13586978 | Msa0491280:CDS | 55.0% |
| !! | ACATGGCCATTCTGAGGCTG+GGG | + | chr3_4:13586960-13586979 | Msa0491280:CDS | 55.0% |
| ATCGCGCCGTTCCAAAGAGA+AGG | + | chr3_4:13586989-13587008 | Msa0491280:CDS | 55.0% | |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | + | chr3_4:13587379-13587398 | Msa0491280:CDS | 55.0% |
| ACTGGTAGGGGAAGAGGAAG+GGG | + | chr3_4:13587381-13587400 | Msa0491280:CDS | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | + | chr3_4:13587393-13587412 | Msa0491280:CDS | 55.0% | |
| TGCAGCAGGTTCAGGCAATG+GGG | - | chr3_4:13587685-13587704 | None:intergenic | 55.0% | |
| GTTGCAGCAGGTTCAGGCAA+TGG | - | chr3_4:13587687-13587706 | None:intergenic | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | + | chr3_4:13587777-13587796 | Msa0491280:CDS | 55.0% | |
| ! | TGGGTTGCGGGGGTGTGAAT+TGG | + | chr3_4:13583721-13583740 | Msa0491280:intron | 60.0% |
| ! | GGGTTGCGGGGGTGTGAATT+GGG | + | chr3_4:13583722-13583741 | Msa0491280:intron | 60.0% |
| ! | TTGCGGGGGTGTGAATTGGG+TGG | + | chr3_4:13583725-13583744 | Msa0491280:intron | 60.0% |
| !! | GCTCACGTAGACACCGACTC+CGG | + | chr3_4:13583811-13583830 | Msa0491280:intron | 60.0% |
| GTCACTGTCGTGACCGGAGT+CGG | - | chr3_4:13583827-13583846 | None:intergenic | 60.0% | |
| !! | GGACATGGCCATTCTGAGGC+TGG | + | chr3_4:13586958-13586977 | Msa0491280:CDS | 60.0% |
| CATCAGCCCCAGCCTCAGAA+TGG | - | chr3_4:13586969-13586988 | None:intergenic | 60.0% | |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | + | chr3_4:13587354-13587373 | Msa0491280:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | + | chr3_4:13587357-13587376 | Msa0491280:CDS | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | + | chr3_4:13587368-13587387 | Msa0491280:CDS | 60.0% |
| !! | CACACTGGCGGTACTGGTAG+GGG | + | chr3_4:13587369-13587388 | Msa0491280:CDS | 60.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | + | chr3_4:13587387-13587406 | Msa0491280:CDS | 60.0% | |
| TCAGGCAATGGGGCCTGAGT+AGG | - | chr3_4:13587675-13587694 | None:intergenic | 60.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | + | chr3_4:13587363-13587382 | Msa0491280:CDS | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | + | chr3_4:13587367-13587386 | Msa0491280:CDS | 65.0% |
| CCCTACCAGTACCGCCAGTG+TGG | - | chr3_4:13587371-13587390 | None:intergenic | 65.0% | |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | + | chr3_4:13587375-13587394 | Msa0491280:CDS | 65.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | + | chr3_4:13587399-13587418 | Msa0491280:CDS | 65.0% | |
| AGAGGAAGAGGCCGCGGTCG+AGG | + | chr3_4:13587405-13587424 | Msa0491280:CDS | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | + | chr3_4:13587406-13587425 | Msa0491280:CDS | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | + | chr3_4:13587407-13587426 | Msa0491280:CDS | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | - | chr3_4:13587419-13587438 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13583283 | 13588122 | 13583283 | ID=Msa0491280;Name=Msa0491280 |
| chr3_4 | mRNA | 13583283 | 13588122 | 13583283 | ID=Msa0491280-mRNA-1;Parent=Msa0491280;Name=Msa0491280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=249|1|1|1|1|1|6|274|292 |
| chr3_4 | exon | 13583283 | 13583564 | 13583283 | ID=Msa0491280-mRNA-1:exon:4081;Parent=Msa0491280-mRNA-1 |
| chr3_4 | exon | 13586120 | 13586192 | 13586120 | ID=Msa0491280-mRNA-1:exon:4082;Parent=Msa0491280-mRNA-1 |
| chr3_4 | exon | 13586286 | 13586379 | 13586286 | ID=Msa0491280-mRNA-1:exon:4083;Parent=Msa0491280-mRNA-1 |
| chr3_4 | exon | 13586882 | 13587010 | 13586882 | ID=Msa0491280-mRNA-1:exon:4084;Parent=Msa0491280-mRNA-1 |
| chr3_4 | exon | 13587102 | 13587159 | 13587102 | ID=Msa0491280-mRNA-1:exon:4085;Parent=Msa0491280-mRNA-1 |
| chr3_4 | exon | 13587357 | 13588122 | 13587357 | ID=Msa0491280-mRNA-1:exon:4086;Parent=Msa0491280-mRNA-1 |
| chr3_4 | five_prime_UTR | 13583283 | 13583531 | 13583283 | ID=Msa0491280-mRNA-1:five_prime_utr;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13583532 | 13583564 | 13583532 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13586120 | 13586192 | 13586120 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13586286 | 13586379 | 13586286 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13586882 | 13587010 | 13586882 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13587102 | 13587159 | 13587102 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | CDS | 13587357 | 13587848 | 13587357 | ID=Msa0491280-mRNA-1:cds;Parent=Msa0491280-mRNA-1 |
| chr3_4 | three_prime_UTR | 13587849 | 13588122 | 13587849 | ID=Msa0491280-mRNA-1:three_prime_utr;Parent=Msa0491280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
