AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0491670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0491670 MtrunA17_Chr3g0092621 83.333 72 12 0 23 94 80 151 5.46e-38 126
Msa0491670 MtrunA17_Chr4g0055931 76.812 69 16 0 26 94 94 162 3.45e-35 123
Msa0491670 MtrunA17_Chr6g0488471 78.788 66 14 0 26 91 96 161 7.59e-35 121
Msa0491670 MtrunA17_Chr2g0331031 73.913 69 18 0 26 94 108 176 1.37e-34 122
Msa0491670 MtrunA17_Chr8g0389241 55.140 107 35 3 6 105 89 189 7.63e-33 116
Msa0491670 MtrunA17_Chr5g0415191 87.143 70 9 0 26 95 101 170 1.17e-32 116
Msa0491670 MtrunA17_Chr4g0059701 95.714 70 3 0 26 95 83 152 4.87e-32 114
Msa0491670 MtrunA17_Chr4g0062741 72.059 68 19 0 26 93 137 204 1.20e-31 113
Msa0491670 MtrunA17_Chr1g0162081 70.588 68 20 0 26 93 121 188 2.01e-30 110
Msa0491670 MtrunA17_Chr1g0210471 69.118 68 21 0 26 93 123 190 1.00e-29 107
Msa0491670 MtrunA17_Chr3g0104071 69.118 68 21 0 26 93 146 213 3.46e-29 107
Msa0491670 MtrunA17_Chr5g0429521 69.118 68 21 0 26 93 131 198 4.84e-29 107
Msa0491670 MtrunA17_Chr7g0241761 68.657 67 21 0 26 92 139 205 1.82e-28 105
Msa0491670 MtrunA17_Chr6g0452791 64.474 76 26 1 27 102 80 154 1.21e-27 100
Msa0491670 MtrunA17_Chr3g0135671 58.025 81 31 1 26 103 90 170 4.82e-27 100
Msa0491670 MtrunA17_Chr5g0436501 63.889 72 24 1 26 95 124 195 6.97e-26 97.8
Msa0491670 MtrunA17_Chr5g0409841 46.667 75 38 1 29 101 94 168 2.69e-19 79.7
Msa0491670 MtrunA17_Chr5g0440741 46.053 76 38 1 29 101 102 177 1.53e-18 79.0
Msa0491670 MtrunA17_Chr5g0440731 44.304 79 41 1 26 101 104 182 3.33e-18 77.8
Msa0491670 MtrunA17_Chr5g0409831 65.217 46 16 0 29 74 79 124 1.07e-16 72.8
Msa0491670 MtrunA17_Chr8g0365011 48.718 78 26 2 29 92 94 171 1.92e-16 73.2
Msa0491670 MtrunA17_Chr8g0364731 59.322 59 22 1 36 92 10 68 2.76e-16 70.9
Msa0491670 MtrunA17_Chr1g0192061 44.186 86 42 3 13 95 49 131 3.35e-15 68.2
Msa0491670 MtrunA17_Chr3g0113121 47.222 72 31 1 29 93 97 168 2.18e-13 63.9
Msa0491670 MtrunA17_Chr5g0432941 42.683 82 44 2 14 93 100 180 6.37e-13 62.8
Msa0491670 MtrunA17_Chr5g0432921 49.254 67 31 2 29 93 115 180 6.78e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0491670 AT5G47390.1 78.261 69 15 0 26 94 95 163 7.45e-36 126
Msa0491670 AT1G49010.1 73.529 68 18 0 26 93 133 200 5.41e-32 115
Msa0491670 AT1G70000.1 83.099 71 12 0 26 96 97 167 7.30e-31 110
Msa0491670 AT1G70000.2 83.099 71 12 0 26 96 97 167 7.30e-31 110
Msa0491670 AT5G04760.1 58.333 84 35 0 26 109 98 181 1.29e-30 108
Msa0491670 AT2G38090.1 69.118 68 21 0 26 93 140 207 7.19e-30 109
Msa0491670 AT5G08520.1 69.118 68 21 0 26 93 117 184 8.26e-30 108
Msa0491670 AT5G56840.1 68.116 69 21 1 26 93 90 158 1.00e-29 107
Msa0491670 AT5G58900.1 69.118 68 21 0 26 93 140 207 1.78e-29 107
Msa0491670 AT3G16350.1 75.362 69 17 0 26 94 136 204 6.80e-29 108
Msa0491670 AT5G61620.1 67.164 67 22 0 26 92 107 173 1.03e-28 106
Msa0491670 AT1G19000.2 84.286 70 11 0 26 95 101 170 7.35e-28 103
Msa0491670 AT1G19000.1 84.286 70 11 0 26 95 101 170 7.35e-28 103
Msa0491670 AT1G74840.2 85.714 70 10 0 26 95 95 164 7.91e-28 102
Msa0491670 AT1G74840.1 85.714 70 10 0 26 95 95 164 9.20e-28 103
Msa0491670 AT5G01200.1 64.706 68 24 0 26 93 145 212 1.16e-26 100
Msa0491670 AT5G05790.2 52.222 90 43 0 26 115 130 219 5.62e-26 98.6
Msa0491670 AT5G05790.1 52.222 90 43 0 26 115 130 219 5.62e-26 98.6
Msa0491670 AT3G11280.2 63.235 68 25 0 26 93 126 193 1.52e-25 97.1
Msa0491670 AT3G11280.1 63.235 68 25 0 26 93 126 193 1.52e-25 97.1
Msa0491670 AT4G09450.1 51.220 82 40 0 25 106 89 170 3.99e-22 87.0
Msa0491670 AT3G10580.2 58.209 67 26 1 26 92 94 158 1.10e-21 87.0
Msa0491670 AT3G10580.1 58.209 67 26 1 26 92 94 158 1.56e-21 87.0
Msa0491670 AT5G23650.1 58.209 67 28 0 26 92 119 185 2.84e-20 84.3
Msa0491670 AT3G10590.1 51.471 68 32 1 28 95 112 178 4.66e-18 76.6

Find 19 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCAATAAAGTAGTATTA+TGG 0.383557 3_4:-14533063 Msa0491670:intron
TTGGTTGGATTGGAGAAAGT+GGG 0.463944 3_4:-14533310 Msa0491670:CDS
AGAAAGTGGGAAAAGGTGAT+TGG 0.482958 3_4:-14533297 Msa0491670:CDS
TCAAATCTAGCTGCATGGTT+GGG 0.502349 3_4:-14532262 Msa0491670:CDS
TTCAAATCTAGCTGCATGGT+TGG 0.505724 3_4:-14532263 Msa0491670:CDS
TTTGGTTGGATTGGAGAAAG+TGG 0.531455 3_4:-14533311 Msa0491670:CDS
GGTGGTGATATCAAAGAGAC+TGG 0.540239 3_4:+14533165 None:intergenic
GGATTGGAGAAAGTGGGAAA+AGG 0.562648 3_4:-14533304 Msa0491670:CDS
TTGTGCTCTTCCTCAGTCCA+CGG 0.578432 3_4:+14533340 None:intergenic
TGACTTCAAATCTAGCTGCA+TGG 0.586649 3_4:-14532267 Msa0491670:CDS
TATCAAAGAGACTGGATCTA+CGG 0.592657 3_4:+14533173 None:intergenic
GACGATTGAGATTACTTCGG+CGG 0.616099 3_4:+14533200 None:intergenic
GTGATTGGAGAGGAATCTCA+AGG 0.619264 3_4:-14533282 Msa0491670:CDS
GTGGGAAAAGGTGATTGGAG+AGG 0.624127 3_4:-14533292 Msa0491670:CDS
TGAATGGATCAGGGATTCCG+TGG 0.626840 3_4:-14533357 Msa0491670:intron
GCATGACTTGCAACATGCGT+AGG 0.636946 3_4:+14533238 None:intergenic
CTTTGATATCACCACCGACA+CGG 0.638033 3_4:-14533158 Msa0491670:intron
ATCAGGGATTCCGTGGACTG+AGG 0.660333 3_4:-14533350 Msa0491670:intron
GACGACGATTGAGATTACTT+CGG 0.681636 3_4:+14533197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAATTGAATACAAATTT+AGG + chr3_4:14532761-14532780 None:intergenic 15.0%
!! TAATCAATAAAGTAGTATTA+TGG - chr3_4:14532783-14532802 Msa0491670:intron 15.0%
!!! AATTTTCTCTGTTATTTTTT+TGG - chr3_4:14532825-14532844 Msa0491670:intron 15.0%
!!! ATTTTGTATTATAAACCTAA+AGG + chr3_4:14532986-14533005 None:intergenic 15.0%
!!! TTAAGTCATTCATTTTTAAA+TGG - chr3_4:14533059-14533078 Msa0491670:intron 15.0%
!!! TCTTATTTGAATTTTATTCA+TGG - chr3_4:14533443-14533462 Msa0491670:intron 15.0%
!! AATAAGAAAGAAATAATGTT+TGG + chr3_4:14533496-14533515 None:intergenic 15.0%
!! AGTATTTCTTATAATATGTA+TGG - chr3_4:14533784-14533803 Msa0491670:CDS 15.0%
!! AACTAATTGAATACAAATTT+AGG + chr3_4:14532761-14532780 None:intergenic 15.0%
!! TAATCAATAAAGTAGTATTA+TGG - chr3_4:14532783-14532802 Msa0491670:intron 15.0%
!!! AATTTTCTCTGTTATTTTTT+TGG - chr3_4:14532825-14532844 Msa0491670:intron 15.0%
!!! ATTTTGTATTATAAACCTAA+AGG + chr3_4:14532986-14533005 None:intergenic 15.0%
!!! TTAAGTCATTCATTTTTAAA+TGG - chr3_4:14533059-14533078 Msa0491670:intron 15.0%
!!! TCTTATTTGAATTTTATTCA+TGG - chr3_4:14533443-14533462 Msa0491670:intron 15.0%
!! AATAAGAAAGAAATAATGTT+TGG + chr3_4:14533496-14533515 None:intergenic 15.0%
!! AGTATTTCTTATAATATGTA+TGG - chr3_4:14533784-14533803 Msa0491670:CDS 15.0%
!! AATATCTACTTAAAATTCTG+AGG + chr3_4:14532288-14532307 None:intergenic 20.0%
!! ATTTCAATCAATTCAAACAA+AGG + chr3_4:14532439-14532458 None:intergenic 20.0%
!!! TGTTATTGATTTTCTTTGAA+TGG - chr3_4:14532473-14532492 Msa0491670:intron 20.0%
!! AAGTGATTCATTTGTTTAAA+TGG - chr3_4:14532946-14532965 Msa0491670:intron 20.0%
!!! AGATTTTTTTTGAAGAACAT+TGG - chr3_4:14533654-14533673 Msa0491670:intron 20.0%
!! AATACTCTAAATTAAGCATA+AGG + chr3_4:14533770-14533789 None:intergenic 20.0%
!! AATATCTACTTAAAATTCTG+AGG + chr3_4:14532288-14532307 None:intergenic 20.0%
!! ATTTCAATCAATTCAAACAA+AGG + chr3_4:14532439-14532458 None:intergenic 20.0%
!!! TGTTATTGATTTTCTTTGAA+TGG - chr3_4:14532473-14532492 Msa0491670:intron 20.0%
!! AAGTGATTCATTTGTTTAAA+TGG - chr3_4:14532946-14532965 Msa0491670:intron 20.0%
!!! AGATTTTTTTTGAAGAACAT+TGG - chr3_4:14533654-14533673 Msa0491670:intron 20.0%
!! AATACTCTAAATTAAGCATA+AGG + chr3_4:14533770-14533789 None:intergenic 20.0%
! AATACAGCACAATTCAAAAT+TGG + chr3_4:14532140-14532159 None:intergenic 25.0%
! TTGTGCTGTATTATTCATTT+AGG - chr3_4:14532148-14532167 Msa0491670:intron 25.0%
! TGTGCTGTATTATTCATTTA+GGG - chr3_4:14532149-14532168 Msa0491670:intron 25.0%
!!! TATTAAGACTTTTGCCATTT+AGG - chr3_4:14532880-14532899 Msa0491670:intron 25.0%
! CAATAGTTCAAATTCCTAAA+TGG + chr3_4:14532897-14532916 None:intergenic 25.0%
! AGGAATTTGAACTATTGTAA+AGG - chr3_4:14532900-14532919 Msa0491670:intron 25.0%
! TTACAAATTCAATGTAGCTA+GGG + chr3_4:14533025-14533044 None:intergenic 25.0%
! AAAGCTACAAATTCAACTTA+CGG + chr3_4:14533112-14533131 None:intergenic 25.0%
!!! ATTAGTGCTGTTATTTTTCA+TGG - chr3_4:14533189-14533208 Msa0491670:CDS 25.0%
! TCTATTTAGAAAGCTATTTG+TGG - chr3_4:14533715-14533734 Msa0491670:intron 25.0%
!!! TGTATGGTTTTTTTAATTGC+AGG - chr3_4:14533800-14533819 Msa0491670:CDS 25.0%
! AATACAGCACAATTCAAAAT+TGG + chr3_4:14532140-14532159 None:intergenic 25.0%
! TTGTGCTGTATTATTCATTT+AGG - chr3_4:14532148-14532167 Msa0491670:intron 25.0%
! TGTGCTGTATTATTCATTTA+GGG - chr3_4:14532149-14532168 Msa0491670:intron 25.0%
!!! TATTAAGACTTTTGCCATTT+AGG - chr3_4:14532880-14532899 Msa0491670:intron 25.0%
! CAATAGTTCAAATTCCTAAA+TGG + chr3_4:14532897-14532916 None:intergenic 25.0%
! AGGAATTTGAACTATTGTAA+AGG - chr3_4:14532900-14532919 Msa0491670:intron 25.0%
! TTACAAATTCAATGTAGCTA+GGG + chr3_4:14533025-14533044 None:intergenic 25.0%
! AAAGCTACAAATTCAACTTA+CGG + chr3_4:14533112-14533131 None:intergenic 25.0%
!!! ATTAGTGCTGTTATTTTTCA+TGG - chr3_4:14533189-14533208 Msa0491670:CDS 25.0%
! TCTATTTAGAAAGCTATTTG+TGG - chr3_4:14533715-14533734 Msa0491670:intron 25.0%
!!! TGTATGGTTTTTTTAATTGC+AGG - chr3_4:14533800-14533819 Msa0491670:CDS 25.0%
CAAATTGACAAAAAACACAC+AGG + chr3_4:14532074-14532093 None:intergenic 30.0%
!!! GTTTTTTGTCAATTTGCTTC+TGG - chr3_4:14532078-14532097 Msa0491670:intron 30.0%
!! TAGCAGATTTGTTACTTACA+AGG - chr3_4:14532110-14532129 Msa0491670:intron 30.0%
GTGCTGTATTATTCATTTAG+GGG - chr3_4:14532150-14532169 Msa0491670:intron 30.0%
ACATGTGCACAAACTTTAAT+TGG - chr3_4:14532203-14532222 Msa0491670:intron 30.0%
ATAACTACATCTTATGCAAG+AGG - chr3_4:14532227-14532246 Msa0491670:intron 30.0%
! TCTCACGTTTAAATGGTTTT+TGG - chr3_4:14532344-14532363 Msa0491670:intron 30.0%
! TGATTTTCTTTGAATGGATC+AGG - chr3_4:14532479-14532498 Msa0491670:intron 30.0%
! GATTTTCTTTGAATGGATCA+GGG - chr3_4:14532480-14532499 Msa0491670:intron 30.0%
GTTCATTATGTTAGTCCTTT+AGG - chr3_4:14532968-14532987 Msa0491670:intron 30.0%
CTTACAAATTCAATGTAGCT+AGG + chr3_4:14533026-14533045 None:intergenic 30.0%
AATTCAACTTACGGTAAAGT+GGG + chr3_4:14533103-14533122 None:intergenic 30.0%
AAATTCAACTTACGGTAAAG+TGG + chr3_4:14533104-14533123 None:intergenic 30.0%
! TGTGTACCTTTTACTATTGT+TGG - chr3_4:14533154-14533173 Msa0491670:intron 30.0%
TACGAACCAACAATAGTAAA+AGG + chr3_4:14533163-14533182 None:intergenic 30.0%
AAGTAAAGCCATGAATCATT+TGG - chr3_4:14533253-14533272 Msa0491670:CDS 30.0%
ATGTACTAATGAGCTATCAA+AGG + chr3_4:14533412-14533431 None:intergenic 30.0%
AGCTCATTAGTACATATTGT+TGG - chr3_4:14533417-14533436 Msa0491670:intron 30.0%
CAAATTGACAAAAAACACAC+AGG + chr3_4:14532074-14532093 None:intergenic 30.0%
!!! GTTTTTTGTCAATTTGCTTC+TGG - chr3_4:14532078-14532097 Msa0491670:intron 30.0%
!! TAGCAGATTTGTTACTTACA+AGG - chr3_4:14532110-14532129 Msa0491670:intron 30.0%
GTGCTGTATTATTCATTTAG+GGG - chr3_4:14532150-14532169 Msa0491670:intron 30.0%
ACATGTGCACAAACTTTAAT+TGG - chr3_4:14532203-14532222 Msa0491670:intron 30.0%
ATAACTACATCTTATGCAAG+AGG - chr3_4:14532227-14532246 Msa0491670:intron 30.0%
! TCTCACGTTTAAATGGTTTT+TGG - chr3_4:14532344-14532363 Msa0491670:intron 30.0%
! TGATTTTCTTTGAATGGATC+AGG - chr3_4:14532479-14532498 Msa0491670:intron 30.0%
! GATTTTCTTTGAATGGATCA+GGG - chr3_4:14532480-14532499 Msa0491670:intron 30.0%
GTTCATTATGTTAGTCCTTT+AGG - chr3_4:14532968-14532987 Msa0491670:intron 30.0%
CTTACAAATTCAATGTAGCT+AGG + chr3_4:14533026-14533045 None:intergenic 30.0%
AATTCAACTTACGGTAAAGT+GGG + chr3_4:14533103-14533122 None:intergenic 30.0%
AAATTCAACTTACGGTAAAG+TGG + chr3_4:14533104-14533123 None:intergenic 30.0%
! TGTGTACCTTTTACTATTGT+TGG - chr3_4:14533154-14533173 Msa0491670:intron 30.0%
TACGAACCAACAATAGTAAA+AGG + chr3_4:14533163-14533182 None:intergenic 30.0%
AAGTAAAGCCATGAATCATT+TGG - chr3_4:14533253-14533272 Msa0491670:CDS 30.0%
ATGTACTAATGAGCTATCAA+AGG + chr3_4:14533412-14533431 None:intergenic 30.0%
AGCTCATTAGTACATATTGT+TGG - chr3_4:14533417-14533436 Msa0491670:intron 30.0%
ACAAAAAACACACAGGATAG+GGG + chr3_4:14532067-14532086 None:intergenic 35.0%
GACAAAAAACACACAGGATA+GGG + chr3_4:14532068-14532087 None:intergenic 35.0%
TGACAAAAAACACACAGGAT+AGG + chr3_4:14532069-14532088 None:intergenic 35.0%
!! CAATTTGCTTCTGGTTTGTA+AGG - chr3_4:14532087-14532106 Msa0491670:intron 35.0%
TCACTTGGATTGAGCATTAA+AGG - chr3_4:14532255-14532274 Msa0491670:CDS 35.0%
CTACATGTCTCACGTTTAAA+TGG - chr3_4:14532337-14532356 Msa0491670:intron 35.0%
!!! CAAGATGTTTTTGGTTGGAT+TGG - chr3_4:14532526-14532545 Msa0491670:intron 35.0%
TATCAAAGAGACTGGATCTA+CGG + chr3_4:14532676-14532695 None:intergenic 35.0%
TCCATTAATGACATGTAGCA+TGG - chr3_4:14533290-14533309 Msa0491670:CDS 35.0%
TCCATGCTACATGTCATTAA+TGG + chr3_4:14533294-14533313 None:intergenic 35.0%
GAATGAAGATCCTGAAAACT+TGG - chr3_4:14533354-14533373 Msa0491670:intron 35.0%
! TCAAATCCAACCAAGTTTTC+AGG + chr3_4:14533367-14533386 None:intergenic 35.0%
!! AAGGTACTATTTGGTGCATA+AGG + chr3_4:14533393-14533412 None:intergenic 35.0%
!! GAGCTATCAAAGGTACTATT+TGG + chr3_4:14533402-14533421 None:intergenic 35.0%
ACAAAAAACACACAGGATAG+GGG + chr3_4:14532067-14532086 None:intergenic 35.0%
GACAAAAAACACACAGGATA+GGG + chr3_4:14532068-14532087 None:intergenic 35.0%
TGACAAAAAACACACAGGAT+AGG + chr3_4:14532069-14532088 None:intergenic 35.0%
!! CAATTTGCTTCTGGTTTGTA+AGG - chr3_4:14532087-14532106 Msa0491670:intron 35.0%
TCACTTGGATTGAGCATTAA+AGG - chr3_4:14532255-14532274 Msa0491670:CDS 35.0%
CTACATGTCTCACGTTTAAA+TGG - chr3_4:14532337-14532356 Msa0491670:intron 35.0%
!!! CAAGATGTTTTTGGTTGGAT+TGG - chr3_4:14532526-14532545 Msa0491670:intron 35.0%
TATCAAAGAGACTGGATCTA+CGG + chr3_4:14532676-14532695 None:intergenic 35.0%
TCCATTAATGACATGTAGCA+TGG - chr3_4:14533290-14533309 Msa0491670:CDS 35.0%
TCCATGCTACATGTCATTAA+TGG + chr3_4:14533294-14533313 None:intergenic 35.0%
GAATGAAGATCCTGAAAACT+TGG - chr3_4:14533354-14533373 Msa0491670:intron 35.0%
! TCAAATCCAACCAAGTTTTC+AGG + chr3_4:14533367-14533386 None:intergenic 35.0%
!! AAGGTACTATTTGGTGCATA+AGG + chr3_4:14533393-14533412 None:intergenic 35.0%
!! GAGCTATCAAAGGTACTATT+TGG + chr3_4:14533402-14533421 None:intergenic 35.0%
CAAAAAACACACAGGATAGG+GGG + chr3_4:14532066-14532085 None:intergenic 40.0%
ATGCAAGAGGAACTTTCACT+TGG - chr3_4:14532240-14532259 Msa0491670:intron 40.0%
CATTCTCTCTGAGCAAACAA+TGG - chr3_4:14532314-14532333 Msa0491670:intron 40.0%
!! GGAAGAGCACAAGATGTTTT+TGG - chr3_4:14532517-14532536 Msa0491670:intron 40.0%
!!! GAGCACAAGATGTTTTTGGT+TGG - chr3_4:14532521-14532540 Msa0491670:intron 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG - chr3_4:14532535-14532554 Msa0491670:intron 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG - chr3_4:14532536-14532555 Msa0491670:intron 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG - chr3_4:14532549-14532568 Msa0491670:intron 40.0%
GACGACGATTGAGATTACTT+CGG + chr3_4:14532652-14532671 None:intergenic 40.0%
!!! CACCGACACGGTAATTTTTT+CGG - chr3_4:14532700-14532719 Msa0491670:intron 40.0%
TGCCGAAAAAATTACCGTGT+CGG + chr3_4:14532705-14532724 None:intergenic 40.0%
TGTAGCTAGGGACTTTCATT+AGG + chr3_4:14533013-14533032 None:intergenic 40.0%
GCAGTACACCAAATGATTCA+TGG + chr3_4:14533264-14533283 None:intergenic 40.0%
GAAGATCCTGAAAACTTGGT+TGG - chr3_4:14533358-14533377 Msa0491670:intron 40.0%
! CTGTTATCAAAAGTGTGCGA+AGG + chr3_4:14533472-14533491 None:intergenic 40.0%
TGACTTCAAATCTAGCTGCA+TGG - chr3_4:14533579-14533598 Msa0491670:intron 40.0%
TTCAAATCTAGCTGCATGGT+TGG - chr3_4:14533583-14533602 Msa0491670:intron 40.0%
TCAAATCTAGCTGCATGGTT+GGG - chr3_4:14533584-14533603 Msa0491670:intron 40.0%
CAAAAAACACACAGGATAGG+GGG + chr3_4:14532066-14532085 None:intergenic 40.0%
ATGCAAGAGGAACTTTCACT+TGG - chr3_4:14532240-14532259 Msa0491670:intron 40.0%
CATTCTCTCTGAGCAAACAA+TGG - chr3_4:14532314-14532333 Msa0491670:intron 40.0%
!! GGAAGAGCACAAGATGTTTT+TGG - chr3_4:14532517-14532536 Msa0491670:intron 40.0%
!!! GAGCACAAGATGTTTTTGGT+TGG - chr3_4:14532521-14532540 Msa0491670:intron 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG - chr3_4:14532535-14532554 Msa0491670:intron 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG - chr3_4:14532536-14532555 Msa0491670:intron 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG - chr3_4:14532549-14532568 Msa0491670:intron 40.0%
GACGACGATTGAGATTACTT+CGG + chr3_4:14532652-14532671 None:intergenic 40.0%
!!! CACCGACACGGTAATTTTTT+CGG - chr3_4:14532700-14532719 Msa0491670:intron 40.0%
TGCCGAAAAAATTACCGTGT+CGG + chr3_4:14532705-14532724 None:intergenic 40.0%
TGTAGCTAGGGACTTTCATT+AGG + chr3_4:14533013-14533032 None:intergenic 40.0%
GCAGTACACCAAATGATTCA+TGG + chr3_4:14533264-14533283 None:intergenic 40.0%
GAAGATCCTGAAAACTTGGT+TGG - chr3_4:14533358-14533377 Msa0491670:intron 40.0%
! CTGTTATCAAAAGTGTGCGA+AGG + chr3_4:14533472-14533491 None:intergenic 40.0%
TGACTTCAAATCTAGCTGCA+TGG - chr3_4:14533579-14533598 Msa0491670:intron 40.0%
TTCAAATCTAGCTGCATGGT+TGG - chr3_4:14533583-14533602 Msa0491670:intron 40.0%
TCAAATCTAGCTGCATGGTT+GGG - chr3_4:14533584-14533603 Msa0491670:intron 40.0%
GGATTGGAGAAAGTGGGAAA+AGG - chr3_4:14532542-14532561 Msa0491670:intron 45.0%
GTGATTGGAGAGGAATCTCA+AGG - chr3_4:14532564-14532583 Msa0491670:intron 45.0%
GACGATTGAGATTACTTCGG+CGG + chr3_4:14532649-14532668 None:intergenic 45.0%
GGTGGTGATATCAAAGAGAC+TGG + chr3_4:14532684-14532703 None:intergenic 45.0%
CTTTGATATCACCACCGACA+CGG - chr3_4:14532688-14532707 Msa0491670:intron 45.0%
CGAAAAAATTACCGTGTCGG+TGG + chr3_4:14532702-14532721 None:intergenic 45.0%
GGATTGGAGAAAGTGGGAAA+AGG - chr3_4:14532542-14532561 Msa0491670:intron 45.0%
GTGATTGGAGAGGAATCTCA+AGG - chr3_4:14532564-14532583 Msa0491670:intron 45.0%
GACGATTGAGATTACTTCGG+CGG + chr3_4:14532649-14532668 None:intergenic 45.0%
GGTGGTGATATCAAAGAGAC+TGG + chr3_4:14532684-14532703 None:intergenic 45.0%
CTTTGATATCACCACCGACA+CGG - chr3_4:14532688-14532707 Msa0491670:intron 45.0%
CGAAAAAATTACCGTGTCGG+TGG + chr3_4:14532702-14532721 None:intergenic 45.0%
TGAATGGATCAGGGATTCCG+TGG - chr3_4:14532489-14532508 Msa0491670:intron 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG + chr3_4:14532509-14532528 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG - chr3_4:14532554-14532573 Msa0491670:intron 50.0%
! GCATGACTTGCAACATGCGT+AGG + chr3_4:14532611-14532630 None:intergenic 50.0%
TGAATGGATCAGGGATTCCG+TGG - chr3_4:14532489-14532508 Msa0491670:intron 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG + chr3_4:14532509-14532528 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG - chr3_4:14532554-14532573 Msa0491670:intron 50.0%
! GCATGACTTGCAACATGCGT+AGG + chr3_4:14532611-14532630 None:intergenic 50.0%
! ATCAGGGATTCCGTGGACTG+AGG - chr3_4:14532496-14532515 Msa0491670:intron 55.0%
! ATCAGGGATTCCGTGGACTG+AGG - chr3_4:14532496-14532515 Msa0491670:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 14532024 14533844 14532024 ID=Msa0491670;Name=Msa0491670
chr3_4 mRNA 14532024 14533844 14532024 ID=Msa0491670-mRNA-1;Parent=Msa0491670;Name=Msa0491670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.33|0|0.33|6|0|124
chr3_4 exon 14533769 14533844 14533769 ID=Msa0491670-mRNA-1:exon:4269;Parent=Msa0491670-mRNA-1
chr3_4 exon 14533159 14533367 14533159 ID=Msa0491670-mRNA-1:exon:4268;Parent=Msa0491670-mRNA-1
chr3_4 exon 14533064 14533070 14533064 ID=Msa0491670-mRNA-1:exon:4267;Parent=Msa0491670-mRNA-1
chr3_4 exon 14532243 14532295 14532243 ID=Msa0491670-mRNA-1:exon:4266;Parent=Msa0491670-mRNA-1
chr3_4 exon 14532193 14532199 14532193 ID=Msa0491670-mRNA-1:exon:4265;Parent=Msa0491670-mRNA-1
chr3_4 exon 14532024 14532046 14532024 ID=Msa0491670-mRNA-1:exon:4264;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14533769 14533844 14533769 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14533159 14533367 14533159 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14533064 14533070 14533064 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14532243 14532295 14532243 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14532193 14532199 14532193 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
chr3_4 CDS 14532024 14532046 14532024 ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1
Gene Sequence

>Msa0491670

ATGTTTGTTGCAGAGTTTTTGAGAGCTGTTTTTTGTGTGCCCCCTATCCTGTGTGTTTTTTGTCAATTTGCTTCTGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTACGCATGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGTCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGTATTATGTTTATTTGACTTCAAATCTAGCTGCATGGTTGGGACTTATGATCTCAAAGCATAACATTGGATTGCATGAAAAAAATGTGTAA

Protein sequence

>Msa0491670

MFVAEFLRAVFCVPPILCVFCQFASGIPWTEEEHKMFLVGLEKVGKGDWRGISRNYVKTRTPTHVASHAQKYFLRRSNLNRRRRRSSLFDITTDTYYVYLTSNLAAWLGLMISKHNIGLHEKNV*