Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0491670 | KEH17177.1 | 82.353 | 102 | 17 | 1 | 1 | 101 | 1 | 102 | 1.05e-52 | 175 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0491670 | sp|Q9LVS0|KUA1_ARATH | 78.261 | 69 | 15 | 0 | 26 | 94 | 95 | 163 | 7.33e-35 | 126 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0491670 | A0A072TIE3 | 82.353 | 102 | 17 | 1 | 1 | 101 | 1 | 102 | 4.99e-53 | 175 |
Gene ID | Type | Classification |
---|---|---|
Msa0491670 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0491670 | MtrunA17_Chr3g0092621 | 83.333 | 72 | 12 | 0 | 23 | 94 | 80 | 151 | 5.46e-38 | 126 |
Msa0491670 | MtrunA17_Chr4g0055931 | 76.812 | 69 | 16 | 0 | 26 | 94 | 94 | 162 | 3.45e-35 | 123 |
Msa0491670 | MtrunA17_Chr6g0488471 | 78.788 | 66 | 14 | 0 | 26 | 91 | 96 | 161 | 7.59e-35 | 121 |
Msa0491670 | MtrunA17_Chr2g0331031 | 73.913 | 69 | 18 | 0 | 26 | 94 | 108 | 176 | 1.37e-34 | 122 |
Msa0491670 | MtrunA17_Chr8g0389241 | 55.140 | 107 | 35 | 3 | 6 | 105 | 89 | 189 | 7.63e-33 | 116 |
Msa0491670 | MtrunA17_Chr5g0415191 | 87.143 | 70 | 9 | 0 | 26 | 95 | 101 | 170 | 1.17e-32 | 116 |
Msa0491670 | MtrunA17_Chr4g0059701 | 95.714 | 70 | 3 | 0 | 26 | 95 | 83 | 152 | 4.87e-32 | 114 |
Msa0491670 | MtrunA17_Chr4g0062741 | 72.059 | 68 | 19 | 0 | 26 | 93 | 137 | 204 | 1.20e-31 | 113 |
Msa0491670 | MtrunA17_Chr1g0162081 | 70.588 | 68 | 20 | 0 | 26 | 93 | 121 | 188 | 2.01e-30 | 110 |
Msa0491670 | MtrunA17_Chr1g0210471 | 69.118 | 68 | 21 | 0 | 26 | 93 | 123 | 190 | 1.00e-29 | 107 |
Msa0491670 | MtrunA17_Chr3g0104071 | 69.118 | 68 | 21 | 0 | 26 | 93 | 146 | 213 | 3.46e-29 | 107 |
Msa0491670 | MtrunA17_Chr5g0429521 | 69.118 | 68 | 21 | 0 | 26 | 93 | 131 | 198 | 4.84e-29 | 107 |
Msa0491670 | MtrunA17_Chr7g0241761 | 68.657 | 67 | 21 | 0 | 26 | 92 | 139 | 205 | 1.82e-28 | 105 |
Msa0491670 | MtrunA17_Chr6g0452791 | 64.474 | 76 | 26 | 1 | 27 | 102 | 80 | 154 | 1.21e-27 | 100 |
Msa0491670 | MtrunA17_Chr3g0135671 | 58.025 | 81 | 31 | 1 | 26 | 103 | 90 | 170 | 4.82e-27 | 100 |
Msa0491670 | MtrunA17_Chr5g0436501 | 63.889 | 72 | 24 | 1 | 26 | 95 | 124 | 195 | 6.97e-26 | 97.8 |
Msa0491670 | MtrunA17_Chr5g0409841 | 46.667 | 75 | 38 | 1 | 29 | 101 | 94 | 168 | 2.69e-19 | 79.7 |
Msa0491670 | MtrunA17_Chr5g0440741 | 46.053 | 76 | 38 | 1 | 29 | 101 | 102 | 177 | 1.53e-18 | 79.0 |
Msa0491670 | MtrunA17_Chr5g0440731 | 44.304 | 79 | 41 | 1 | 26 | 101 | 104 | 182 | 3.33e-18 | 77.8 |
Msa0491670 | MtrunA17_Chr5g0409831 | 65.217 | 46 | 16 | 0 | 29 | 74 | 79 | 124 | 1.07e-16 | 72.8 |
Msa0491670 | MtrunA17_Chr8g0365011 | 48.718 | 78 | 26 | 2 | 29 | 92 | 94 | 171 | 1.92e-16 | 73.2 |
Msa0491670 | MtrunA17_Chr8g0364731 | 59.322 | 59 | 22 | 1 | 36 | 92 | 10 | 68 | 2.76e-16 | 70.9 |
Msa0491670 | MtrunA17_Chr1g0192061 | 44.186 | 86 | 42 | 3 | 13 | 95 | 49 | 131 | 3.35e-15 | 68.2 |
Msa0491670 | MtrunA17_Chr3g0113121 | 47.222 | 72 | 31 | 1 | 29 | 93 | 97 | 168 | 2.18e-13 | 63.9 |
Msa0491670 | MtrunA17_Chr5g0432941 | 42.683 | 82 | 44 | 2 | 14 | 93 | 100 | 180 | 6.37e-13 | 62.8 |
Msa0491670 | MtrunA17_Chr5g0432921 | 49.254 | 67 | 31 | 2 | 29 | 93 | 115 | 180 | 6.78e-13 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0491670 | AT5G47390.1 | 78.261 | 69 | 15 | 0 | 26 | 94 | 95 | 163 | 7.45e-36 | 126 |
Msa0491670 | AT1G49010.1 | 73.529 | 68 | 18 | 0 | 26 | 93 | 133 | 200 | 5.41e-32 | 115 |
Msa0491670 | AT1G70000.1 | 83.099 | 71 | 12 | 0 | 26 | 96 | 97 | 167 | 7.30e-31 | 110 |
Msa0491670 | AT1G70000.2 | 83.099 | 71 | 12 | 0 | 26 | 96 | 97 | 167 | 7.30e-31 | 110 |
Msa0491670 | AT5G04760.1 | 58.333 | 84 | 35 | 0 | 26 | 109 | 98 | 181 | 1.29e-30 | 108 |
Msa0491670 | AT2G38090.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 140 | 207 | 7.19e-30 | 109 |
Msa0491670 | AT5G08520.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 117 | 184 | 8.26e-30 | 108 |
Msa0491670 | AT5G56840.1 | 68.116 | 69 | 21 | 1 | 26 | 93 | 90 | 158 | 1.00e-29 | 107 |
Msa0491670 | AT5G58900.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 140 | 207 | 1.78e-29 | 107 |
Msa0491670 | AT3G16350.1 | 75.362 | 69 | 17 | 0 | 26 | 94 | 136 | 204 | 6.80e-29 | 108 |
Msa0491670 | AT5G61620.1 | 67.164 | 67 | 22 | 0 | 26 | 92 | 107 | 173 | 1.03e-28 | 106 |
Msa0491670 | AT1G19000.2 | 84.286 | 70 | 11 | 0 | 26 | 95 | 101 | 170 | 7.35e-28 | 103 |
Msa0491670 | AT1G19000.1 | 84.286 | 70 | 11 | 0 | 26 | 95 | 101 | 170 | 7.35e-28 | 103 |
Msa0491670 | AT1G74840.2 | 85.714 | 70 | 10 | 0 | 26 | 95 | 95 | 164 | 7.91e-28 | 102 |
Msa0491670 | AT1G74840.1 | 85.714 | 70 | 10 | 0 | 26 | 95 | 95 | 164 | 9.20e-28 | 103 |
Msa0491670 | AT5G01200.1 | 64.706 | 68 | 24 | 0 | 26 | 93 | 145 | 212 | 1.16e-26 | 100 |
Msa0491670 | AT5G05790.2 | 52.222 | 90 | 43 | 0 | 26 | 115 | 130 | 219 | 5.62e-26 | 98.6 |
Msa0491670 | AT5G05790.1 | 52.222 | 90 | 43 | 0 | 26 | 115 | 130 | 219 | 5.62e-26 | 98.6 |
Msa0491670 | AT3G11280.2 | 63.235 | 68 | 25 | 0 | 26 | 93 | 126 | 193 | 1.52e-25 | 97.1 |
Msa0491670 | AT3G11280.1 | 63.235 | 68 | 25 | 0 | 26 | 93 | 126 | 193 | 1.52e-25 | 97.1 |
Msa0491670 | AT4G09450.1 | 51.220 | 82 | 40 | 0 | 25 | 106 | 89 | 170 | 3.99e-22 | 87.0 |
Msa0491670 | AT3G10580.2 | 58.209 | 67 | 26 | 1 | 26 | 92 | 94 | 158 | 1.10e-21 | 87.0 |
Msa0491670 | AT3G10580.1 | 58.209 | 67 | 26 | 1 | 26 | 92 | 94 | 158 | 1.56e-21 | 87.0 |
Msa0491670 | AT5G23650.1 | 58.209 | 67 | 28 | 0 | 26 | 92 | 119 | 185 | 2.84e-20 | 84.3 |
Msa0491670 | AT3G10590.1 | 51.471 | 68 | 32 | 1 | 28 | 95 | 112 | 178 | 4.66e-18 | 76.6 |
Find 19 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATCAATAAAGTAGTATTA+TGG | 0.383557 | 3_4:-14533063 | Msa0491670:intron |
TTGGTTGGATTGGAGAAAGT+GGG | 0.463944 | 3_4:-14533310 | Msa0491670:CDS |
AGAAAGTGGGAAAAGGTGAT+TGG | 0.482958 | 3_4:-14533297 | Msa0491670:CDS |
TCAAATCTAGCTGCATGGTT+GGG | 0.502349 | 3_4:-14532262 | Msa0491670:CDS |
TTCAAATCTAGCTGCATGGT+TGG | 0.505724 | 3_4:-14532263 | Msa0491670:CDS |
TTTGGTTGGATTGGAGAAAG+TGG | 0.531455 | 3_4:-14533311 | Msa0491670:CDS |
GGTGGTGATATCAAAGAGAC+TGG | 0.540239 | 3_4:+14533165 | None:intergenic |
GGATTGGAGAAAGTGGGAAA+AGG | 0.562648 | 3_4:-14533304 | Msa0491670:CDS |
TTGTGCTCTTCCTCAGTCCA+CGG | 0.578432 | 3_4:+14533340 | None:intergenic |
TGACTTCAAATCTAGCTGCA+TGG | 0.586649 | 3_4:-14532267 | Msa0491670:CDS |
TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 3_4:+14533173 | None:intergenic |
GACGATTGAGATTACTTCGG+CGG | 0.616099 | 3_4:+14533200 | None:intergenic |
GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 3_4:-14533282 | Msa0491670:CDS |
GTGGGAAAAGGTGATTGGAG+AGG | 0.624127 | 3_4:-14533292 | Msa0491670:CDS |
TGAATGGATCAGGGATTCCG+TGG | 0.626840 | 3_4:-14533357 | Msa0491670:intron |
GCATGACTTGCAACATGCGT+AGG | 0.636946 | 3_4:+14533238 | None:intergenic |
CTTTGATATCACCACCGACA+CGG | 0.638033 | 3_4:-14533158 | Msa0491670:intron |
ATCAGGGATTCCGTGGACTG+AGG | 0.660333 | 3_4:-14533350 | Msa0491670:intron |
GACGACGATTGAGATTACTT+CGG | 0.681636 | 3_4:+14533197 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACTAATTGAATACAAATTT+AGG | + | chr3_4:14532761-14532780 | None:intergenic | 15.0% |
!! | TAATCAATAAAGTAGTATTA+TGG | - | chr3_4:14532783-14532802 | Msa0491670:intron | 15.0% |
!!! | AATTTTCTCTGTTATTTTTT+TGG | - | chr3_4:14532825-14532844 | Msa0491670:intron | 15.0% |
!!! | ATTTTGTATTATAAACCTAA+AGG | + | chr3_4:14532986-14533005 | None:intergenic | 15.0% |
!!! | TTAAGTCATTCATTTTTAAA+TGG | - | chr3_4:14533059-14533078 | Msa0491670:intron | 15.0% |
!!! | TCTTATTTGAATTTTATTCA+TGG | - | chr3_4:14533443-14533462 | Msa0491670:intron | 15.0% |
!! | AATAAGAAAGAAATAATGTT+TGG | + | chr3_4:14533496-14533515 | None:intergenic | 15.0% |
!! | AGTATTTCTTATAATATGTA+TGG | - | chr3_4:14533784-14533803 | Msa0491670:CDS | 15.0% |
!! | AACTAATTGAATACAAATTT+AGG | + | chr3_4:14532761-14532780 | None:intergenic | 15.0% |
!! | TAATCAATAAAGTAGTATTA+TGG | - | chr3_4:14532783-14532802 | Msa0491670:intron | 15.0% |
!!! | AATTTTCTCTGTTATTTTTT+TGG | - | chr3_4:14532825-14532844 | Msa0491670:intron | 15.0% |
!!! | ATTTTGTATTATAAACCTAA+AGG | + | chr3_4:14532986-14533005 | None:intergenic | 15.0% |
!!! | TTAAGTCATTCATTTTTAAA+TGG | - | chr3_4:14533059-14533078 | Msa0491670:intron | 15.0% |
!!! | TCTTATTTGAATTTTATTCA+TGG | - | chr3_4:14533443-14533462 | Msa0491670:intron | 15.0% |
!! | AATAAGAAAGAAATAATGTT+TGG | + | chr3_4:14533496-14533515 | None:intergenic | 15.0% |
!! | AGTATTTCTTATAATATGTA+TGG | - | chr3_4:14533784-14533803 | Msa0491670:CDS | 15.0% |
!! | AATATCTACTTAAAATTCTG+AGG | + | chr3_4:14532288-14532307 | None:intergenic | 20.0% |
!! | ATTTCAATCAATTCAAACAA+AGG | + | chr3_4:14532439-14532458 | None:intergenic | 20.0% |
!!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr3_4:14532473-14532492 | Msa0491670:intron | 20.0% |
!! | AAGTGATTCATTTGTTTAAA+TGG | - | chr3_4:14532946-14532965 | Msa0491670:intron | 20.0% |
!!! | AGATTTTTTTTGAAGAACAT+TGG | - | chr3_4:14533654-14533673 | Msa0491670:intron | 20.0% |
!! | AATACTCTAAATTAAGCATA+AGG | + | chr3_4:14533770-14533789 | None:intergenic | 20.0% |
!! | AATATCTACTTAAAATTCTG+AGG | + | chr3_4:14532288-14532307 | None:intergenic | 20.0% |
!! | ATTTCAATCAATTCAAACAA+AGG | + | chr3_4:14532439-14532458 | None:intergenic | 20.0% |
!!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr3_4:14532473-14532492 | Msa0491670:intron | 20.0% |
!! | AAGTGATTCATTTGTTTAAA+TGG | - | chr3_4:14532946-14532965 | Msa0491670:intron | 20.0% |
!!! | AGATTTTTTTTGAAGAACAT+TGG | - | chr3_4:14533654-14533673 | Msa0491670:intron | 20.0% |
!! | AATACTCTAAATTAAGCATA+AGG | + | chr3_4:14533770-14533789 | None:intergenic | 20.0% |
! | AATACAGCACAATTCAAAAT+TGG | + | chr3_4:14532140-14532159 | None:intergenic | 25.0% |
! | TTGTGCTGTATTATTCATTT+AGG | - | chr3_4:14532148-14532167 | Msa0491670:intron | 25.0% |
! | TGTGCTGTATTATTCATTTA+GGG | - | chr3_4:14532149-14532168 | Msa0491670:intron | 25.0% |
!!! | TATTAAGACTTTTGCCATTT+AGG | - | chr3_4:14532880-14532899 | Msa0491670:intron | 25.0% |
! | CAATAGTTCAAATTCCTAAA+TGG | + | chr3_4:14532897-14532916 | None:intergenic | 25.0% |
! | AGGAATTTGAACTATTGTAA+AGG | - | chr3_4:14532900-14532919 | Msa0491670:intron | 25.0% |
! | TTACAAATTCAATGTAGCTA+GGG | + | chr3_4:14533025-14533044 | None:intergenic | 25.0% |
! | AAAGCTACAAATTCAACTTA+CGG | + | chr3_4:14533112-14533131 | None:intergenic | 25.0% |
!!! | ATTAGTGCTGTTATTTTTCA+TGG | - | chr3_4:14533189-14533208 | Msa0491670:CDS | 25.0% |
! | TCTATTTAGAAAGCTATTTG+TGG | - | chr3_4:14533715-14533734 | Msa0491670:intron | 25.0% |
!!! | TGTATGGTTTTTTTAATTGC+AGG | - | chr3_4:14533800-14533819 | Msa0491670:CDS | 25.0% |
! | AATACAGCACAATTCAAAAT+TGG | + | chr3_4:14532140-14532159 | None:intergenic | 25.0% |
! | TTGTGCTGTATTATTCATTT+AGG | - | chr3_4:14532148-14532167 | Msa0491670:intron | 25.0% |
! | TGTGCTGTATTATTCATTTA+GGG | - | chr3_4:14532149-14532168 | Msa0491670:intron | 25.0% |
!!! | TATTAAGACTTTTGCCATTT+AGG | - | chr3_4:14532880-14532899 | Msa0491670:intron | 25.0% |
! | CAATAGTTCAAATTCCTAAA+TGG | + | chr3_4:14532897-14532916 | None:intergenic | 25.0% |
! | AGGAATTTGAACTATTGTAA+AGG | - | chr3_4:14532900-14532919 | Msa0491670:intron | 25.0% |
! | TTACAAATTCAATGTAGCTA+GGG | + | chr3_4:14533025-14533044 | None:intergenic | 25.0% |
! | AAAGCTACAAATTCAACTTA+CGG | + | chr3_4:14533112-14533131 | None:intergenic | 25.0% |
!!! | ATTAGTGCTGTTATTTTTCA+TGG | - | chr3_4:14533189-14533208 | Msa0491670:CDS | 25.0% |
! | TCTATTTAGAAAGCTATTTG+TGG | - | chr3_4:14533715-14533734 | Msa0491670:intron | 25.0% |
!!! | TGTATGGTTTTTTTAATTGC+AGG | - | chr3_4:14533800-14533819 | Msa0491670:CDS | 25.0% |
CAAATTGACAAAAAACACAC+AGG | + | chr3_4:14532074-14532093 | None:intergenic | 30.0% | |
!!! | GTTTTTTGTCAATTTGCTTC+TGG | - | chr3_4:14532078-14532097 | Msa0491670:intron | 30.0% |
!! | TAGCAGATTTGTTACTTACA+AGG | - | chr3_4:14532110-14532129 | Msa0491670:intron | 30.0% |
GTGCTGTATTATTCATTTAG+GGG | - | chr3_4:14532150-14532169 | Msa0491670:intron | 30.0% | |
ACATGTGCACAAACTTTAAT+TGG | - | chr3_4:14532203-14532222 | Msa0491670:intron | 30.0% | |
ATAACTACATCTTATGCAAG+AGG | - | chr3_4:14532227-14532246 | Msa0491670:intron | 30.0% | |
! | TCTCACGTTTAAATGGTTTT+TGG | - | chr3_4:14532344-14532363 | Msa0491670:intron | 30.0% |
! | TGATTTTCTTTGAATGGATC+AGG | - | chr3_4:14532479-14532498 | Msa0491670:intron | 30.0% |
! | GATTTTCTTTGAATGGATCA+GGG | - | chr3_4:14532480-14532499 | Msa0491670:intron | 30.0% |
GTTCATTATGTTAGTCCTTT+AGG | - | chr3_4:14532968-14532987 | Msa0491670:intron | 30.0% | |
CTTACAAATTCAATGTAGCT+AGG | + | chr3_4:14533026-14533045 | None:intergenic | 30.0% | |
AATTCAACTTACGGTAAAGT+GGG | + | chr3_4:14533103-14533122 | None:intergenic | 30.0% | |
AAATTCAACTTACGGTAAAG+TGG | + | chr3_4:14533104-14533123 | None:intergenic | 30.0% | |
! | TGTGTACCTTTTACTATTGT+TGG | - | chr3_4:14533154-14533173 | Msa0491670:intron | 30.0% |
TACGAACCAACAATAGTAAA+AGG | + | chr3_4:14533163-14533182 | None:intergenic | 30.0% | |
AAGTAAAGCCATGAATCATT+TGG | - | chr3_4:14533253-14533272 | Msa0491670:CDS | 30.0% | |
ATGTACTAATGAGCTATCAA+AGG | + | chr3_4:14533412-14533431 | None:intergenic | 30.0% | |
AGCTCATTAGTACATATTGT+TGG | - | chr3_4:14533417-14533436 | Msa0491670:intron | 30.0% | |
CAAATTGACAAAAAACACAC+AGG | + | chr3_4:14532074-14532093 | None:intergenic | 30.0% | |
!!! | GTTTTTTGTCAATTTGCTTC+TGG | - | chr3_4:14532078-14532097 | Msa0491670:intron | 30.0% |
!! | TAGCAGATTTGTTACTTACA+AGG | - | chr3_4:14532110-14532129 | Msa0491670:intron | 30.0% |
GTGCTGTATTATTCATTTAG+GGG | - | chr3_4:14532150-14532169 | Msa0491670:intron | 30.0% | |
ACATGTGCACAAACTTTAAT+TGG | - | chr3_4:14532203-14532222 | Msa0491670:intron | 30.0% | |
ATAACTACATCTTATGCAAG+AGG | - | chr3_4:14532227-14532246 | Msa0491670:intron | 30.0% | |
! | TCTCACGTTTAAATGGTTTT+TGG | - | chr3_4:14532344-14532363 | Msa0491670:intron | 30.0% |
! | TGATTTTCTTTGAATGGATC+AGG | - | chr3_4:14532479-14532498 | Msa0491670:intron | 30.0% |
! | GATTTTCTTTGAATGGATCA+GGG | - | chr3_4:14532480-14532499 | Msa0491670:intron | 30.0% |
GTTCATTATGTTAGTCCTTT+AGG | - | chr3_4:14532968-14532987 | Msa0491670:intron | 30.0% | |
CTTACAAATTCAATGTAGCT+AGG | + | chr3_4:14533026-14533045 | None:intergenic | 30.0% | |
AATTCAACTTACGGTAAAGT+GGG | + | chr3_4:14533103-14533122 | None:intergenic | 30.0% | |
AAATTCAACTTACGGTAAAG+TGG | + | chr3_4:14533104-14533123 | None:intergenic | 30.0% | |
! | TGTGTACCTTTTACTATTGT+TGG | - | chr3_4:14533154-14533173 | Msa0491670:intron | 30.0% |
TACGAACCAACAATAGTAAA+AGG | + | chr3_4:14533163-14533182 | None:intergenic | 30.0% | |
AAGTAAAGCCATGAATCATT+TGG | - | chr3_4:14533253-14533272 | Msa0491670:CDS | 30.0% | |
ATGTACTAATGAGCTATCAA+AGG | + | chr3_4:14533412-14533431 | None:intergenic | 30.0% | |
AGCTCATTAGTACATATTGT+TGG | - | chr3_4:14533417-14533436 | Msa0491670:intron | 30.0% | |
ACAAAAAACACACAGGATAG+GGG | + | chr3_4:14532067-14532086 | None:intergenic | 35.0% | |
GACAAAAAACACACAGGATA+GGG | + | chr3_4:14532068-14532087 | None:intergenic | 35.0% | |
TGACAAAAAACACACAGGAT+AGG | + | chr3_4:14532069-14532088 | None:intergenic | 35.0% | |
!! | CAATTTGCTTCTGGTTTGTA+AGG | - | chr3_4:14532087-14532106 | Msa0491670:intron | 35.0% |
TCACTTGGATTGAGCATTAA+AGG | - | chr3_4:14532255-14532274 | Msa0491670:CDS | 35.0% | |
CTACATGTCTCACGTTTAAA+TGG | - | chr3_4:14532337-14532356 | Msa0491670:intron | 35.0% | |
!!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr3_4:14532526-14532545 | Msa0491670:intron | 35.0% |
TATCAAAGAGACTGGATCTA+CGG | + | chr3_4:14532676-14532695 | None:intergenic | 35.0% | |
TCCATTAATGACATGTAGCA+TGG | - | chr3_4:14533290-14533309 | Msa0491670:CDS | 35.0% | |
TCCATGCTACATGTCATTAA+TGG | + | chr3_4:14533294-14533313 | None:intergenic | 35.0% | |
GAATGAAGATCCTGAAAACT+TGG | - | chr3_4:14533354-14533373 | Msa0491670:intron | 35.0% | |
! | TCAAATCCAACCAAGTTTTC+AGG | + | chr3_4:14533367-14533386 | None:intergenic | 35.0% |
!! | AAGGTACTATTTGGTGCATA+AGG | + | chr3_4:14533393-14533412 | None:intergenic | 35.0% |
!! | GAGCTATCAAAGGTACTATT+TGG | + | chr3_4:14533402-14533421 | None:intergenic | 35.0% |
ACAAAAAACACACAGGATAG+GGG | + | chr3_4:14532067-14532086 | None:intergenic | 35.0% | |
GACAAAAAACACACAGGATA+GGG | + | chr3_4:14532068-14532087 | None:intergenic | 35.0% | |
TGACAAAAAACACACAGGAT+AGG | + | chr3_4:14532069-14532088 | None:intergenic | 35.0% | |
!! | CAATTTGCTTCTGGTTTGTA+AGG | - | chr3_4:14532087-14532106 | Msa0491670:intron | 35.0% |
TCACTTGGATTGAGCATTAA+AGG | - | chr3_4:14532255-14532274 | Msa0491670:CDS | 35.0% | |
CTACATGTCTCACGTTTAAA+TGG | - | chr3_4:14532337-14532356 | Msa0491670:intron | 35.0% | |
!!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr3_4:14532526-14532545 | Msa0491670:intron | 35.0% |
TATCAAAGAGACTGGATCTA+CGG | + | chr3_4:14532676-14532695 | None:intergenic | 35.0% | |
TCCATTAATGACATGTAGCA+TGG | - | chr3_4:14533290-14533309 | Msa0491670:CDS | 35.0% | |
TCCATGCTACATGTCATTAA+TGG | + | chr3_4:14533294-14533313 | None:intergenic | 35.0% | |
GAATGAAGATCCTGAAAACT+TGG | - | chr3_4:14533354-14533373 | Msa0491670:intron | 35.0% | |
! | TCAAATCCAACCAAGTTTTC+AGG | + | chr3_4:14533367-14533386 | None:intergenic | 35.0% |
!! | AAGGTACTATTTGGTGCATA+AGG | + | chr3_4:14533393-14533412 | None:intergenic | 35.0% |
!! | GAGCTATCAAAGGTACTATT+TGG | + | chr3_4:14533402-14533421 | None:intergenic | 35.0% |
CAAAAAACACACAGGATAGG+GGG | + | chr3_4:14532066-14532085 | None:intergenic | 40.0% | |
ATGCAAGAGGAACTTTCACT+TGG | - | chr3_4:14532240-14532259 | Msa0491670:intron | 40.0% | |
CATTCTCTCTGAGCAAACAA+TGG | - | chr3_4:14532314-14532333 | Msa0491670:intron | 40.0% | |
!! | GGAAGAGCACAAGATGTTTT+TGG | - | chr3_4:14532517-14532536 | Msa0491670:intron | 40.0% |
!!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr3_4:14532521-14532540 | Msa0491670:intron | 40.0% |
! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr3_4:14532535-14532554 | Msa0491670:intron | 40.0% |
! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr3_4:14532536-14532555 | Msa0491670:intron | 40.0% |
AGAAAGTGGGAAAAGGTGAT+TGG | - | chr3_4:14532549-14532568 | Msa0491670:intron | 40.0% | |
GACGACGATTGAGATTACTT+CGG | + | chr3_4:14532652-14532671 | None:intergenic | 40.0% | |
!!! | CACCGACACGGTAATTTTTT+CGG | - | chr3_4:14532700-14532719 | Msa0491670:intron | 40.0% |
TGCCGAAAAAATTACCGTGT+CGG | + | chr3_4:14532705-14532724 | None:intergenic | 40.0% | |
TGTAGCTAGGGACTTTCATT+AGG | + | chr3_4:14533013-14533032 | None:intergenic | 40.0% | |
GCAGTACACCAAATGATTCA+TGG | + | chr3_4:14533264-14533283 | None:intergenic | 40.0% | |
GAAGATCCTGAAAACTTGGT+TGG | - | chr3_4:14533358-14533377 | Msa0491670:intron | 40.0% | |
! | CTGTTATCAAAAGTGTGCGA+AGG | + | chr3_4:14533472-14533491 | None:intergenic | 40.0% |
TGACTTCAAATCTAGCTGCA+TGG | - | chr3_4:14533579-14533598 | Msa0491670:intron | 40.0% | |
TTCAAATCTAGCTGCATGGT+TGG | - | chr3_4:14533583-14533602 | Msa0491670:intron | 40.0% | |
TCAAATCTAGCTGCATGGTT+GGG | - | chr3_4:14533584-14533603 | Msa0491670:intron | 40.0% | |
CAAAAAACACACAGGATAGG+GGG | + | chr3_4:14532066-14532085 | None:intergenic | 40.0% | |
ATGCAAGAGGAACTTTCACT+TGG | - | chr3_4:14532240-14532259 | Msa0491670:intron | 40.0% | |
CATTCTCTCTGAGCAAACAA+TGG | - | chr3_4:14532314-14532333 | Msa0491670:intron | 40.0% | |
!! | GGAAGAGCACAAGATGTTTT+TGG | - | chr3_4:14532517-14532536 | Msa0491670:intron | 40.0% |
!!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr3_4:14532521-14532540 | Msa0491670:intron | 40.0% |
! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr3_4:14532535-14532554 | Msa0491670:intron | 40.0% |
! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr3_4:14532536-14532555 | Msa0491670:intron | 40.0% |
AGAAAGTGGGAAAAGGTGAT+TGG | - | chr3_4:14532549-14532568 | Msa0491670:intron | 40.0% | |
GACGACGATTGAGATTACTT+CGG | + | chr3_4:14532652-14532671 | None:intergenic | 40.0% | |
!!! | CACCGACACGGTAATTTTTT+CGG | - | chr3_4:14532700-14532719 | Msa0491670:intron | 40.0% |
TGCCGAAAAAATTACCGTGT+CGG | + | chr3_4:14532705-14532724 | None:intergenic | 40.0% | |
TGTAGCTAGGGACTTTCATT+AGG | + | chr3_4:14533013-14533032 | None:intergenic | 40.0% | |
GCAGTACACCAAATGATTCA+TGG | + | chr3_4:14533264-14533283 | None:intergenic | 40.0% | |
GAAGATCCTGAAAACTTGGT+TGG | - | chr3_4:14533358-14533377 | Msa0491670:intron | 40.0% | |
! | CTGTTATCAAAAGTGTGCGA+AGG | + | chr3_4:14533472-14533491 | None:intergenic | 40.0% |
TGACTTCAAATCTAGCTGCA+TGG | - | chr3_4:14533579-14533598 | Msa0491670:intron | 40.0% | |
TTCAAATCTAGCTGCATGGT+TGG | - | chr3_4:14533583-14533602 | Msa0491670:intron | 40.0% | |
TCAAATCTAGCTGCATGGTT+GGG | - | chr3_4:14533584-14533603 | Msa0491670:intron | 40.0% | |
GGATTGGAGAAAGTGGGAAA+AGG | - | chr3_4:14532542-14532561 | Msa0491670:intron | 45.0% | |
GTGATTGGAGAGGAATCTCA+AGG | - | chr3_4:14532564-14532583 | Msa0491670:intron | 45.0% | |
GACGATTGAGATTACTTCGG+CGG | + | chr3_4:14532649-14532668 | None:intergenic | 45.0% | |
GGTGGTGATATCAAAGAGAC+TGG | + | chr3_4:14532684-14532703 | None:intergenic | 45.0% | |
CTTTGATATCACCACCGACA+CGG | - | chr3_4:14532688-14532707 | Msa0491670:intron | 45.0% | |
CGAAAAAATTACCGTGTCGG+TGG | + | chr3_4:14532702-14532721 | None:intergenic | 45.0% | |
GGATTGGAGAAAGTGGGAAA+AGG | - | chr3_4:14532542-14532561 | Msa0491670:intron | 45.0% | |
GTGATTGGAGAGGAATCTCA+AGG | - | chr3_4:14532564-14532583 | Msa0491670:intron | 45.0% | |
GACGATTGAGATTACTTCGG+CGG | + | chr3_4:14532649-14532668 | None:intergenic | 45.0% | |
GGTGGTGATATCAAAGAGAC+TGG | + | chr3_4:14532684-14532703 | None:intergenic | 45.0% | |
CTTTGATATCACCACCGACA+CGG | - | chr3_4:14532688-14532707 | Msa0491670:intron | 45.0% | |
CGAAAAAATTACCGTGTCGG+TGG | + | chr3_4:14532702-14532721 | None:intergenic | 45.0% | |
TGAATGGATCAGGGATTCCG+TGG | - | chr3_4:14532489-14532508 | Msa0491670:intron | 50.0% | |
TTGTGCTCTTCCTCAGTCCA+CGG | + | chr3_4:14532509-14532528 | None:intergenic | 50.0% | |
GTGGGAAAAGGTGATTGGAG+AGG | - | chr3_4:14532554-14532573 | Msa0491670:intron | 50.0% | |
! | GCATGACTTGCAACATGCGT+AGG | + | chr3_4:14532611-14532630 | None:intergenic | 50.0% |
TGAATGGATCAGGGATTCCG+TGG | - | chr3_4:14532489-14532508 | Msa0491670:intron | 50.0% | |
TTGTGCTCTTCCTCAGTCCA+CGG | + | chr3_4:14532509-14532528 | None:intergenic | 50.0% | |
GTGGGAAAAGGTGATTGGAG+AGG | - | chr3_4:14532554-14532573 | Msa0491670:intron | 50.0% | |
! | GCATGACTTGCAACATGCGT+AGG | + | chr3_4:14532611-14532630 | None:intergenic | 50.0% |
! | ATCAGGGATTCCGTGGACTG+AGG | - | chr3_4:14532496-14532515 | Msa0491670:intron | 55.0% |
! | ATCAGGGATTCCGTGGACTG+AGG | - | chr3_4:14532496-14532515 | Msa0491670:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 14532024 | 14533844 | 14532024 | ID=Msa0491670;Name=Msa0491670 |
chr3_4 | mRNA | 14532024 | 14533844 | 14532024 | ID=Msa0491670-mRNA-1;Parent=Msa0491670;Name=Msa0491670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.33|0|0.33|6|0|124 |
chr3_4 | exon | 14533769 | 14533844 | 14533769 | ID=Msa0491670-mRNA-1:exon:4269;Parent=Msa0491670-mRNA-1 |
chr3_4 | exon | 14533159 | 14533367 | 14533159 | ID=Msa0491670-mRNA-1:exon:4268;Parent=Msa0491670-mRNA-1 |
chr3_4 | exon | 14533064 | 14533070 | 14533064 | ID=Msa0491670-mRNA-1:exon:4267;Parent=Msa0491670-mRNA-1 |
chr3_4 | exon | 14532243 | 14532295 | 14532243 | ID=Msa0491670-mRNA-1:exon:4266;Parent=Msa0491670-mRNA-1 |
chr3_4 | exon | 14532193 | 14532199 | 14532193 | ID=Msa0491670-mRNA-1:exon:4265;Parent=Msa0491670-mRNA-1 |
chr3_4 | exon | 14532024 | 14532046 | 14532024 | ID=Msa0491670-mRNA-1:exon:4264;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14533769 | 14533844 | 14533769 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14533159 | 14533367 | 14533159 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14533064 | 14533070 | 14533064 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14532243 | 14532295 | 14532243 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14532193 | 14532199 | 14532193 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
chr3_4 | CDS | 14532024 | 14532046 | 14532024 | ID=Msa0491670-mRNA-1:cds;Parent=Msa0491670-mRNA-1 |
Gene Sequence |
Protein sequence |