AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0491720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0491720 MtrunA17_Chr7g0224601 62.706 303 109 2 12 310 2 304 7.65e-121 349
Msa0491720 MtrunA17_Chr8g0392781 53.371 356 131 2 1 321 1 356 1.25e-118 346
Msa0491720 MtrunA17_Chr1g0177151 61.479 257 95 1 1 257 1 253 3.35e-113 328
Msa0491720 MtrunA17_Chr3g0099561 59.857 279 112 0 38 316 26 304 1.53e-111 326
Msa0491720 MtrunA17_Chr5g0444621 62.857 210 78 0 70 279 52 261 1.38e-87 263
Msa0491720 MtrunA17_Chr6g0477171 65.306 196 68 0 62 257 48 243 4.18e-85 256
Msa0491720 MtrunA17_Chr3g0083811 97.414 116 3 0 186 301 1 116 8.63e-77 230
Msa0491720 MtrunA17_Chr3g0083821 72.973 111 30 0 54 164 10 120 3.73e-51 166
Msa0491720 MtrunA17_Chr5g0444631 67.925 53 17 0 112 164 4 56 2.16e-19 80.5
Msa0491720 MtrunA17_Chr6g0477181 61.017 59 23 0 1 59 1 59 5.83e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0491720 AT3G20800.1 55.814 301 127 2 21 316 17 316 2.85e-110 323
Msa0491720 AT5G12980.1 53.455 275 127 1 31 304 28 302 5.61e-99 294
Msa0491720 AT2G32550.2 35.102 245 143 5 53 285 67 307 5.32e-35 130
Msa0491720 AT2G32550.3 35.470 234 135 5 64 285 39 268 7.93e-35 128
Msa0491720 AT2G32550.1 35.185 216 124 5 82 285 2 213 6.78e-30 114

Find 56 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAACTTGGACCTTTATTA+TGG 0.221177 3_4:-14631730 Msa0491720:CDS
CTCGCTTATCTCAAAATTGC+AGG 0.298861 3_4:-14628566 Msa0491720:intron
AGAAATGAGATCCTTGTATC+AGG 0.301701 3_4:+14630742 None:intergenic
ATAGAAACCTATGACTTCTT+TGG 0.317203 3_4:+14628929 None:intergenic
AGGAATGGATATAAATATAA+AGG 0.360461 3_4:+14630352 None:intergenic
CAATGTTCTTGCACTACTTC+AGG 0.367374 3_4:-14630972 Msa0491720:intron
GTTGCTAGTCTTGGAGTCAT+TGG 0.372727 3_4:-14630289 Msa0491720:CDS
TATATTAGACGATGATGGTT+TGG 0.376298 3_4:-14628709 Msa0491720:CDS
TTGGCATCTTTGAGCCTGTT+TGG 0.379455 3_4:+14628422 None:intergenic
CCAACAGTATTCCATAATAA+AGG 0.383147 3_4:+14631719 None:intergenic
TATGATCAGTGGTGTTAGAT+TGG 0.407147 3_4:+14632880 None:intergenic
GTTAACACCAAAGAAGTCAT+AGG 0.420089 3_4:-14628936 Msa0491720:CDS
TGTTGTTACATGAGAATGTT+GGG 0.422120 3_4:-14627934 Msa0491720:CDS
TCAGAGCACCAAGTTATTTG+AGG 0.428345 3_4:-14631750 Msa0491720:intron
TAACAACTTATCTTCCAAAC+AGG 0.438040 3_4:-14628436 Msa0491720:CDS
TTCTTTGTTGAGAGCGATTG+AGG 0.439462 3_4:+14632939 None:intergenic
GATTGTGAGGGAGAGAGATT+CGG 0.440290 3_4:+14631007 None:intergenic
TAACACAGTTTGAGAATTTG+AGG 0.440707 3_4:-14630312 Msa0491720:CDS
AATCTAACACCACTGATCAT+AGG 0.444777 3_4:-14632878 Msa0491720:CDS
AATTTGAGGGTTGCTAGTCT+TGG 0.451958 3_4:-14630298 Msa0491720:CDS
GGAGGAATTGATGATATTGT+AGG 0.453082 3_4:-14627881 Msa0491720:CDS
AAAATTATATTAGACGATGA+TGG 0.457541 3_4:-14628714 Msa0491720:CDS
CACCCTCACCTCGTTTGTTG+AGG 0.472935 3_4:-14628608 Msa0491720:CDS
TGTTATTGAACTCAGCAATC+CGG 0.481393 3_4:-14632835 Msa0491720:CDS
ATGATCAGTGGTGTTAGATT+GGG 0.483339 3_4:+14632881 None:intergenic
ACCAAGTTATTTGAGGAACT+TGG 0.485648 3_4:-14631743 Msa0491720:CDS
AGATTCGGTGGTGAAAGAGT+AGG 0.488495 3_4:+14631022 None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG 0.491153 3_4:-14627908 Msa0491720:CDS
GCTAGTCTTGGAGTCATTGG+TGG 0.491588 3_4:-14630286 Msa0491720:CDS
CCTTTATTATGGAATACTGT+TGG 0.492405 3_4:-14631719 Msa0491720:CDS
CCTCCTCTACCTGCTTCTAA+AGG 0.503277 3_4:+14627899 None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG 0.520910 3_4:-14627902 Msa0491720:CDS
TCCAAGTTCCTCAAATAACT+TGG 0.522228 3_4:+14631742 None:intergenic
TGGCATCTCACCCTGATACA+AGG 0.537570 3_4:-14630753 Msa0491720:CDS
AACACAGTTTGAGAATTTGA+GGG 0.539961 3_4:-14630311 Msa0491720:CDS
CTGTTGTTACATGAGAATGT+TGG 0.540471 3_4:-14627935 Msa0491720:CDS
AGTCATTGGTGGCTCGATGA+AGG 0.546457 3_4:-14630275 Msa0491720:intron
GAGGAATTGATGATATTGTA+GGG 0.550926 3_4:-14627880 Msa0491720:CDS
CCTTTAGAAGCAGGTAGAGG+AGG 0.553169 3_4:-14627899 Msa0491720:CDS
AGCCTCAACAAACGAGGTGA+GGG 0.559488 3_4:+14628606 None:intergenic
TGTTTGTCTAATATGCAAAA+CGG 0.565201 3_4:-14628882 Msa0491720:CDS
ACAAGGATCTCATTTCTCAA+TGG 0.566776 3_4:-14630736 Msa0491720:intron
AAGCCTCAACAAACGAGGTG+AGG 0.569309 3_4:+14628605 None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG 0.584461 3_4:-14632799 Msa0491720:intron
GAAATGAGATCCTTGTATCA+GGG 0.596244 3_4:+14630743 None:intergenic
CACACTCGAGTTGATTGTGA+GGG 0.603583 3_4:+14630995 None:intergenic
TAACACCACTGATCATAGGA+TGG 0.625981 3_4:-14632874 Msa0491720:CDS
CTCAACAAACGAGGTGAGGG+TGG 0.629401 3_4:+14628609 None:intergenic
TACCTGCTTCTAAAGGAACT+CGG 0.631809 3_4:+14627906 None:intergenic
GATTGCTGAGTTCAATAACA+AGG 0.649486 3_4:+14632838 None:intergenic
TTAGATTGGGTAGAATCACC+AGG 0.651677 3_4:+14632894 None:intergenic
ATCAAAAGCCTCAACAAACG+AGG 0.660997 3_4:+14628600 None:intergenic
GCACACTCGAGTTGATTGTG+AGG 0.665692 3_4:+14630994 None:intergenic
GTAAGCCATCCTATGATCAG+TGG 0.669763 3_4:+14632869 None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG 0.689243 3_4:+14631010 None:intergenic
GTTGTTACATGAGAATGTTG+GGG 0.746517 3_4:-14627933 Msa0491720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATAATTGAATTGAA+AGG - chr3_4:14628222-14628241 Msa0491720:intron 10.0%
!!! TTTTTATAATTGAATTGAAA+GGG - chr3_4:14628223-14628242 Msa0491720:intron 10.0%
!!! CATATATATTTTTTACATTA+AGG + chr3_4:14629993-14630012 None:intergenic 10.0%
!! ACTACAAAAAAAAAATTATT+GGG + chr3_4:14630641-14630660 None:intergenic 10.0%
!! AACTACAAAAAAAAAATTAT+TGG + chr3_4:14630642-14630661 None:intergenic 10.0%
!!! AATTTTTTTTTTGTAGTTTT+TGG - chr3_4:14630644-14630663 Msa0491720:intron 10.0%
!! TAGATAATTAAAGATATTAA+CGG + chr3_4:14631129-14631148 None:intergenic 10.0%
!!! ATACAGTTTTTTTTTTTTTT+TGG + chr3_4:14631398-14631417 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACTGTA+TGG - chr3_4:14631397-14631416 Msa0491720:intron 10.0%
!!! TTAAAAGATATATATTTTAG+CGG - chr3_4:14631436-14631455 Msa0491720:intron 10.0%
!! AGTTATAATAAATTAATTGT+CGG - chr3_4:14631524-14631543 Msa0491720:intron 10.0%
!!! TACAATAATATCTAATTTTA+GGG + chr3_4:14631578-14631597 None:intergenic 10.0%
!! ATTATATGAAAATTGATATT+AGG - chr3_4:14631676-14631695 Msa0491720:intron 10.0%
!! AATACTCTATAATAATAAAT+TGG + chr3_4:14632003-14632022 None:intergenic 10.0%
!! ATTAGTTAATAATAAATCAA+TGG + chr3_4:14632624-14632643 None:intergenic 10.0%
!!! GAACTTTTATACTAAAATTT+CGG - chr3_4:14628978-14628997 Msa0491720:intron 15.0%
!! ATAGATTCATAATCTAAAAA+TGG + chr3_4:14629393-14629412 None:intergenic 15.0%
!!! ATATTTCTTTTTGTAGTTTT+TGG + chr3_4:14630843-14630862 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG - chr3_4:14631233-14631252 Msa0491720:intron 15.0%
!! GACAATTAATTTATTATAAC+TGG + chr3_4:14631525-14631544 None:intergenic 15.0%
!!! CTACAATAATATCTAATTTT+AGG + chr3_4:14631579-14631598 None:intergenic 15.0%
!! AAAATTGATATTAGGTATTT+GGG - chr3_4:14631684-14631703 Msa0491720:intron 15.0%
!!! TTCATTTTTAATGTCTTTCA+TGG - chr3_4:14628065-14628084 Msa0491720:intron 20.0%
!!! TCATTTTTAATGTCTTTCAT+GGG - chr3_4:14628066-14628085 Msa0491720:intron 20.0%
!! TAATTGTTTCGTTATTGAAA+GGG - chr3_4:14628417-14628436 Msa0491720:CDS 20.0%
!!! TTTTTCAATTTTAATGCATC+TGG - chr3_4:14628533-14628552 Msa0491720:intron 20.0%
!!! ATCAATTTTTGTTGAAAACT+TGG - chr3_4:14628556-14628575 Msa0491720:intron 20.0%
!!! AAGCTTCTAAATTTTTTCAA+TGG + chr3_4:14628605-14628624 None:intergenic 20.0%
!! AAAATCACACTATCAAATTT+CGG + chr3_4:14628678-14628697 None:intergenic 20.0%
!!! GATAGTGTGATTTTTTTTAA+TGG - chr3_4:14628684-14628703 Msa0491720:CDS 20.0%
!!! AATCTTGATTTTACCATAAA+TGG + chr3_4:14628754-14628773 None:intergenic 20.0%
!!! TTACCATGTTTGTTTTATTT+TGG - chr3_4:14628956-14628975 Msa0491720:intron 20.0%
!!! ATTACATATTATTTTCTAGC+TGG - chr3_4:14629159-14629178 Msa0491720:intron 20.0%
!! AATTTAGAGAAAGATATACA+TGG + chr3_4:14629432-14629451 None:intergenic 20.0%
!!! AATTTAGTTTTTAAACCTCT+AGG - chr3_4:14629597-14629616 Msa0491720:intron 20.0%
!!! ATTGATTTTCATGTATTTTG+GGG + chr3_4:14629930-14629949 None:intergenic 20.0%
!!! GATTGATTTTCATGTATTTT+GGG + chr3_4:14629931-14629950 None:intergenic 20.0%
!!! TGATTGATTTTCATGTATTT+TGG + chr3_4:14629932-14629951 None:intergenic 20.0%
!!! AATGTTTTTTTTATAGTGTG+TGG - chr3_4:14630040-14630059 Msa0491720:intron 20.0%
!! TATGGAGATATATAACTATT+TGG - chr3_4:14630234-14630253 Msa0491720:intron 20.0%
!! AGGAATGGATATAAATATAA+AGG + chr3_4:14630464-14630483 None:intergenic 20.0%
!!! TTTTGTTTTTGGCTAAAATA+TGG - chr3_4:14630578-14630597 Msa0491720:intron 20.0%
!!! TCTGCAAAATATTTTGTTTT+TGG - chr3_4:14630772-14630791 Msa0491720:intron 20.0%
!!! TATTTTGTTTTTGGAAATAG+TGG - chr3_4:14630781-14630800 Msa0491720:intron 20.0%
!!! TCAAAAACAAAATATTTTGC+AGG - chr3_4:14630815-14630834 Msa0491720:intron 20.0%
!!! CAAAAACAAAATATTTTGCA+GGG - chr3_4:14630816-14630835 Msa0491720:intron 20.0%
!! AAAAAACAAAGGCTAAAATA+TGG + chr3_4:14630911-14630930 None:intergenic 20.0%
!!! AAATATATTTTCACATTGCA+AGG + chr3_4:14631000-14631019 None:intergenic 20.0%
!! TTCACACAATAAACTAATTA+AGG - chr3_4:14631340-14631359 Msa0491720:intron 20.0%
!!! CAATGTTAGTAAAAGTTTTA+AGG + chr3_4:14631496-14631515 None:intergenic 20.0%
!!! CTTAAAACTTTTACTAACAT+TGG - chr3_4:14631494-14631513 Msa0491720:intron 20.0%
!! GAAAATTGATATTAGGTATT+TGG - chr3_4:14631683-14631702 Msa0491720:intron 20.0%
!! AAAATTATATTAGACGATGA+TGG - chr3_4:14632099-14632118 Msa0491720:intron 20.0%
!! ATTGAATTCTCTCTTTATAA+AGG + chr3_4:14632783-14632802 None:intergenic 20.0%
! TTCACAAGTAATACAAATCT+TGG - chr3_4:14628090-14628109 Msa0491720:intron 25.0%
! ATGAGAACAAAGATGTTATT+AGG + chr3_4:14628192-14628211 None:intergenic 25.0%
! CTTTCAATAACGAAACAATT+AGG + chr3_4:14628418-14628437 None:intergenic 25.0%
! CTAATTGTTTCGTTATTGAA+AGG - chr3_4:14628416-14628435 Msa0491720:CDS 25.0%
! TTTGTTGAAAACTTGGTATT+CGG - chr3_4:14628563-14628582 Msa0491720:intron 25.0%
!!! AAATTTTTTCAATGGTACTC+CGG + chr3_4:14628597-14628616 None:intergenic 25.0%
!! CATTACTTTGACTTTAAATG+AGG + chr3_4:14628636-14628655 None:intergenic 25.0%
! GTTCCAAAATAAAACAAACA+TGG + chr3_4:14628962-14628981 None:intergenic 25.0%
!!! TACTATTGCAGTATTTTTAC+AGG - chr3_4:14629117-14629136 Msa0491720:intron 25.0%
! ATATTTGATGAAACACACAA+TGG - chr3_4:14629301-14629320 Msa0491720:intron 25.0%
! ACTTAGAAAATATATGGTGA+TGG - chr3_4:14629485-14629504 Msa0491720:intron 25.0%
!!! TTAGCTCAAGGATTTTTTTT+AGG - chr3_4:14629553-14629572 Msa0491720:intron 25.0%
!!! TAGCTCAAGGATTTTTTTTA+GGG - chr3_4:14629554-14629573 Msa0491720:intron 25.0%
!!! TTGTGCTGTTTTTTTTTTTC+AGG - chr3_4:14629751-14629770 Msa0491720:intron 25.0%
!!! TTGATTTTCATGTATTTTGG+GGG + chr3_4:14629929-14629948 None:intergenic 25.0%
! TTATTCTGAATTACAATCCA+AGG - chr3_4:14630132-14630151 Msa0491720:intron 25.0%
!! GTTCTTTTGTGAAAATACTA+TGG - chr3_4:14630216-14630235 Msa0491720:intron 25.0%
!!! TGAAAAGTGTTTTGAATAAG+AGG - chr3_4:14630293-14630312 Msa0491720:CDS 25.0%
!!! GAAAAGTGTTTTGAATAAGA+GGG - chr3_4:14630294-14630313 Msa0491720:CDS 25.0%
!!! CTTTCCCATTTTTAACATAA+TGG + chr3_4:14630369-14630388 None:intergenic 25.0%
! GCTGCATATAATAACAAAAA+AGG + chr3_4:14630434-14630453 None:intergenic 25.0%
!!! TTAACTTGCTTGTTGTTTTA+AGG + chr3_4:14630484-14630503 None:intergenic 25.0%
! AAAAACAAAAGTTAGAAGGA+TGG + chr3_4:14630568-14630587 None:intergenic 25.0%
!!! ATCCTTCTAACTTTTGTTTT+TGG - chr3_4:14630567-14630586 Msa0491720:intron 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - chr3_4:14631292-14631311 Msa0491720:intron 25.0%
! TAAGGATTCTCTAAACTTTA+TGG - chr3_4:14631358-14631377 Msa0491720:intron 25.0%
!!! AAGTTTTAAGGACAGTTATA+AGG + chr3_4:14631484-14631503 None:intergenic 25.0%
!!! ATTGTCGGTAAAAGTTTTAA+CGG - chr3_4:14631539-14631558 Msa0491720:intron 25.0%
! CAAAACGAAATAAATAAGCA+TGG + chr3_4:14631838-14631857 None:intergenic 25.0%
!! TGCTTATTTATTTCGTTTTG+TGG - chr3_4:14631838-14631857 Msa0491720:intron 25.0%
! TGTTTGTCTAATATGCAAAA+CGG - chr3_4:14631931-14631950 Msa0491720:intron 25.0%
! ACGAAAAAAATTGATGAGAT+TGG + chr3_4:14632413-14632432 None:intergenic 25.0%
! ATATTACAAGACATGCTATT+AGG - chr3_4:14632540-14632559 Msa0491720:intron 25.0%
! TATTACAAGACATGCTATTA+GGG - chr3_4:14632541-14632560 Msa0491720:intron 25.0%
!!! TAAGTTTTGTGACACATTTA+TGG - chr3_4:14632680-14632699 Msa0491720:intron 25.0%
!! CATTTATGGTATTTTCAAAG+TGG - chr3_4:14632694-14632713 Msa0491720:intron 25.0%
! CTAGATATTGTTTCAATTTC+AGG - chr3_4:14632829-14632848 Msa0491720:CDS 25.0%
AGATAGATATGTAAGAACCT+TGG + chr3_4:14628034-14628053 None:intergenic 30.0%
ACAAGTAATACAAATCTTGG+AGG - chr3_4:14628093-14628112 Msa0491720:intron 30.0%
TGTTATTAGGTCTAGCAAAA+GGG + chr3_4:14628179-14628198 None:intergenic 30.0%
ATGTTATTAGGTCTAGCAAA+AGG + chr3_4:14628180-14628199 None:intergenic 30.0%
! TCTCCAGAATAATTTGTCTT+TGG - chr3_4:14628370-14628389 Msa0491720:intron 30.0%
TTCACTGTTTAGTGTATCAT+GGG - chr3_4:14628440-14628459 Msa0491720:CDS 30.0%
AATCAAGATTATTATCGCAC+AGG - chr3_4:14628764-14628783 Msa0491720:intron 30.0%
CCAACAGTATTCCATAATAA+AGG + chr3_4:14629097-14629116 None:intergenic 30.0%
CCTTTATTATGGAATACTGT+TGG - chr3_4:14629094-14629113 Msa0491720:intron 30.0%
ATGAAACACACAATGGTATT+GGG - chr3_4:14629308-14629327 Msa0491720:intron 30.0%
TGAAATGATGATTGTTCTGA+AGG + chr3_4:14629370-14629389 None:intergenic 30.0%
TAGAGAAAGATATACATGGT+AGG + chr3_4:14629428-14629447 None:intergenic 30.0%
! TTATGTTTCCAACTTTTACG+AGG - chr3_4:14629459-14629478 Msa0491720:intron 30.0%
! TATGTTTCCAACTTTTACGA+GGG - chr3_4:14629460-14629479 Msa0491720:intron 30.0%
AGGGAGACTTAGAAAATATA+TGG - chr3_4:14629479-14629498 Msa0491720:intron 30.0%
TTGAATAAGAGGGATGAATT+TGG - chr3_4:14630304-14630323 Msa0491720:CDS 30.0%
CAGGCCATTATGTTAAAAAT+GGG - chr3_4:14630362-14630381 Msa0491720:CDS 30.0%
!!! TTGCTTGTTGTTTTAAGGAA+TGG + chr3_4:14630479-14630498 None:intergenic 30.0%
TAACACAGTTTGAGAATTTG+AGG - chr3_4:14630501-14630520 Msa0491720:intron 30.0%
AACACAGTTTGAGAATTTGA+GGG - chr3_4:14630502-14630521 Msa0491720:intron 30.0%
AGCCAAAAACAAAAGTTAGA+AGG + chr3_4:14630572-14630591 None:intergenic 30.0%
CAAAACGAGACATATTTACA+GGG + chr3_4:14630611-14630630 None:intergenic 30.0%
ACAAAACGAGACATATTTAC+AGG + chr3_4:14630612-14630631 None:intergenic 30.0%
CAAAACGAGACATATTTGTA+GGG + chr3_4:14630671-14630690 None:intergenic 30.0%
!!! AATATGTCTCGTTTTGGTTT+TGG - chr3_4:14630675-14630694 Msa0491720:intron 30.0%
ACATGATGATTGAACCTATT+CGG - chr3_4:14630736-14630755 Msa0491720:intron 30.0%
!! AGACTATTTTTCTACCGAAT+AGG + chr3_4:14630753-14630772 None:intergenic 30.0%
!!! TTTGTTTTTGGAAATAGTGG+AGG - chr3_4:14630784-14630803 Msa0491720:intron 30.0%
!!! TTGTTTTTGGAAATAGTGGA+GGG - chr3_4:14630785-14630804 Msa0491720:intron 30.0%
TCAGCTGCATTAAAAAACAA+AGG + chr3_4:14630922-14630941 None:intergenic 30.0%
!! CTTGGACATGTATTTTGAAA+CGG + chr3_4:14631071-14631090 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG - chr3_4:14631274-14631293 Msa0491720:intron 30.0%
TGAACTAATCCTAACAAGTT+GGG + chr3_4:14631719-14631738 None:intergenic 30.0%
ATGAACTAATCCTAACAAGT+TGG + chr3_4:14631720-14631739 None:intergenic 30.0%
TTGTGGTATTTGATATTCAC+AGG - chr3_4:14631855-14631874 Msa0491720:intron 30.0%
ATAGAAACCTATGACTTCTT+TGG + chr3_4:14631887-14631906 None:intergenic 30.0%
GATATACAACTTTCATTAGC+AGG + chr3_4:14632051-14632070 None:intergenic 30.0%
ATTATAAATGTTGCAACCTG+TGG + chr3_4:14632075-14632094 None:intergenic 30.0%
! TATATTAGACGATGATGGTT+TGG - chr3_4:14632104-14632123 Msa0491720:intron 30.0%
!!! GCTACAACAGAGAATTTTTT+TGG - chr3_4:14632138-14632157 Msa0491720:intron 30.0%
! AACGTTTGAAACAAGAGAAA+AGG + chr3_4:14632314-14632333 None:intergenic 30.0%
TAACAACTTATCTTCCAAAC+AGG - chr3_4:14632377-14632396 Msa0491720:intron 30.0%
TGTCACAAAACTTACTAAAG+AGG + chr3_4:14632674-14632693 None:intergenic 30.0%
TCAAAGTGGATACTAACTAT+AGG - chr3_4:14632708-14632727 Msa0491720:intron 30.0%
TGTTGTTACATGAGAATGTT+GGG - chr3_4:14632879-14632898 Msa0491720:CDS 30.0%
! GAGGAATTGATGATATTGTA+GGG - chr3_4:14632933-14632952 Msa0491720:CDS 30.0%
! ATGATCAGTGGTGTTAGATT+GGG + chr3_4:14627935-14627954 None:intergenic 35.0%
! TATGATCAGTGGTGTTAGAT+TGG + chr3_4:14627936-14627955 None:intergenic 35.0%
AATCTAACACCACTGATCAT+AGG - chr3_4:14627935-14627954 Msa0491720:CDS 35.0%
GATTGCTGAGTTCAATAACA+AGG + chr3_4:14627978-14627997 None:intergenic 35.0%
TGTTATTGAACTCAGCAATC+CGG - chr3_4:14627978-14627997 Msa0491720:intron 35.0%
!!! AGAGCATTTTCTCTAAGATC+CGG + chr3_4:14628000-14628019 None:intergenic 35.0%
! AAAGGGTTTAATGTTGGTAG+AGG + chr3_4:14628162-14628181 None:intergenic 35.0%
CTAGCAAAAGGGTTTAATGT+TGG + chr3_4:14628168-14628187 None:intergenic 35.0%
TGTTTACGCTTCACTTCTTA+GGG - chr3_4:14628261-14628280 Msa0491720:intron 35.0%
GGAAATGAGACCTGATAATT+TGG - chr3_4:14628283-14628302 Msa0491720:intron 35.0%
! CAAATTATTCTGGAGAACCT+GGG + chr3_4:14628366-14628385 None:intergenic 35.0%
! ACAAATTATTCTGGAGAACC+TGG + chr3_4:14628367-14628386 None:intergenic 35.0%
CCACCAAAGACAAATTATTC+TGG + chr3_4:14628376-14628395 None:intergenic 35.0%
! CCAGAATAATTTGTCTTTGG+TGG - chr3_4:14628373-14628392 Msa0491720:intron 35.0%
GTTCACTGTTTAGTGTATCA+TGG - chr3_4:14628439-14628458 Msa0491720:CDS 35.0%
AAAACTTGGTATTCGGTCAT+AGG - chr3_4:14628570-14628589 Msa0491720:CDS 35.0%
ATCACACTATCAAATTTCGG+TGG + chr3_4:14628675-14628694 None:intergenic 35.0%
GACGACATCTAATCCATTTA+TGG - chr3_4:14628738-14628757 Msa0491720:CDS 35.0%
ACCAAGTTATTTGAGGAACT+TGG - chr3_4:14629070-14629089 Msa0491720:intron 35.0%
TCCAAGTTCCTCAAATAACT+TGG + chr3_4:14629074-14629093 None:intergenic 35.0%
AGGAACTTGGACCTTTATTA+TGG - chr3_4:14629083-14629102 Msa0491720:intron 35.0%
TTGTGCATGTATCTTACTTG+TGG - chr3_4:14629260-14629279 Msa0491720:intron 35.0%
GATGAAACACACAATGGTAT+TGG - chr3_4:14629307-14629326 Msa0491720:intron 35.0%
GAAGGATTGTAATACGACAA+AGG + chr3_4:14629352-14629371 None:intergenic 35.0%
TTTCAAGAGATGTTAGCTCA+AGG - chr3_4:14629541-14629560 Msa0491720:intron 35.0%
GATTTGAACTTCTTTCCTAG+AGG + chr3_4:14629615-14629634 None:intergenic 35.0%
!! GGTCATTTTACAGTTGTTTG+AGG + chr3_4:14629639-14629658 None:intergenic 35.0%
GAAATGAGATCCTTGTATCA+GGG + chr3_4:14630073-14630092 None:intergenic 35.0%
AGAAATGAGATCCTTGTATC+AGG + chr3_4:14630074-14630093 None:intergenic 35.0%
ACAAGGATCTCATTTCTCAA+TGG - chr3_4:14630077-14630096 Msa0491720:intron 35.0%
!! CAACTTGTTACATACAACCT+TGG + chr3_4:14630152-14630171 None:intergenic 35.0%
AAGTTATTGCAACCAAAAGC+TGG + chr3_4:14630341-14630360 None:intergenic 35.0%
!! TTTTGGTTGCAATAACTTGC+AGG - chr3_4:14630343-14630362 Msa0491720:CDS 35.0%
GCAGGCCATTATGTTAAAAA+TGG - chr3_4:14630361-14630380 Msa0491720:CDS 35.0%
CCAAAACGAGACATATTTGT+AGG + chr3_4:14630672-14630691 None:intergenic 35.0%
! CCTACAAATATGTCTCGTTT+TGG - chr3_4:14630669-14630688 Msa0491720:intron 35.0%
GTGCAAATCATCACAAAAGT+GGG + chr3_4:14630709-14630728 None:intergenic 35.0%
TGTGCAAATCATCACAAAAG+TGG + chr3_4:14630710-14630729 None:intergenic 35.0%
CAAAACGAGACATATTTGCA+GGG - chr3_4:14630878-14630897 Msa0491720:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr3_4:14631112-14631131 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr3_4:14631296-14631315 Msa0491720:intron 35.0%
AGGACAGTTATAAGGAATGT+TGG + chr3_4:14631476-14631495 None:intergenic 35.0%
! ACTTACAAACCCAACTTGTT+AGG - chr3_4:14631707-14631726 Msa0491720:CDS 35.0%
TTAGTTCATCTACATCACGA+AGG - chr3_4:14631731-14631750 Msa0491720:CDS 35.0%
TAGTTCATCTACATCACGAA+GGG - chr3_4:14631732-14631751 Msa0491720:CDS 35.0%
GTTAACACCAAAGAAGTCAT+AGG - chr3_4:14631877-14631896 Msa0491720:intron 35.0%
!! GCAGGTATTGGTAACAAAAA+TGG + chr3_4:14632033-14632052 None:intergenic 35.0%
CAACTTTCATTAGCAGGTAT+TGG + chr3_4:14632045-14632064 None:intergenic 35.0%
TGAAAGTTGTATATCTCCAC+AGG - chr3_4:14632056-14632075 Msa0491720:intron 35.0%
!!! TCGAGTTTTGAACATGATGT+TGG - chr3_4:14632167-14632186 Msa0491720:intron 35.0%
CTTATCTCAAAATTGCAGGT+TGG - chr3_4:14632251-14632270 Msa0491720:intron 35.0%
GTATGATGCACACATTCAAT+AGG + chr3_4:14632585-14632604 None:intergenic 35.0%
AGGATGATCCAAAAACTATG+AGG - chr3_4:14632849-14632868 Msa0491720:CDS 35.0%
TGATCCAAAAACTATGAGGT+TGG - chr3_4:14632853-14632872 Msa0491720:CDS 35.0%
! AGTACCAACCTCATAGTTTT+TGG + chr3_4:14632860-14632879 None:intergenic 35.0%
CTGTTGTTACATGAGAATGT+TGG - chr3_4:14632878-14632897 Msa0491720:CDS 35.0%
GTTGTTACATGAGAATGTTG+GGG - chr3_4:14632880-14632899 Msa0491720:CDS 35.0%
! GGAGGAATTGATGATATTGT+AGG - chr3_4:14632932-14632951 Msa0491720:CDS 35.0%
TTCTTTGTTGAGAGCGATTG+AGG + chr3_4:14627877-14627896 None:intergenic 40.0%
! GCATCGTTTATAGCTTTTCC+TGG - chr3_4:14627901-14627920 Msa0491720:CDS 40.0%
TTAGATTGGGTAGAATCACC+AGG + chr3_4:14627922-14627941 None:intergenic 40.0%
TAACACCACTGATCATAGGA+TGG - chr3_4:14627939-14627958 Msa0491720:CDS 40.0%
GTGTTTACGCTTCACTTCTT+AGG - chr3_4:14628260-14628279 Msa0491720:intron 40.0%
GTTTACGCTTCACTTCTTAG+GGG - chr3_4:14628262-14628281 Msa0491720:intron 40.0%
CAGACGAACTCCAAATTATC+AGG + chr3_4:14628296-14628315 None:intergenic 40.0%
! CTGATAATTTGGAGTTCGTC+TGG - chr3_4:14628294-14628313 Msa0491720:intron 40.0%
! TAATTTGGAGTTCGTCTGGT+AGG - chr3_4:14628298-14628317 Msa0491720:intron 40.0%
AGAACCTGGGTTCAATTTCT+GGG + chr3_4:14628353-14628372 None:intergenic 40.0%
! ACGAAACAATTAGGCTCTAG+TGG + chr3_4:14628409-14628428 None:intergenic 40.0%
! TCAGAGCACCAAGTTATTTG+AGG - chr3_4:14629063-14629082 Msa0491720:intron 40.0%
TAAGTCTCCCTCGTAAAAGT+TGG + chr3_4:14629470-14629489 None:intergenic 40.0%
ATTCCTAAGAGTCGCACTAA+TGG + chr3_4:14629660-14629679 None:intergenic 40.0%
CAATGTTCTTGCACTACTTC+AGG - chr3_4:14629841-14629860 Msa0491720:intron 40.0%
! GATTCTCTATGACCAGCTTT+TGG - chr3_4:14630326-14630345 Msa0491720:CDS 40.0%
! AATTTGAGGGTTGCTAGTCT+TGG - chr3_4:14630515-14630534 Msa0491720:intron 40.0%
! TTTGTGATGATTTGCACACG+TGG - chr3_4:14630712-14630731 Msa0491720:intron 40.0%
! CCTGCAAATATGTCTCGTTT+TGG + chr3_4:14630880-14630899 None:intergenic 40.0%
CCAAAACGAGACATATTTGC+AGG - chr3_4:14630877-14630896 Msa0491720:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr3_4:14631295-14631314 None:intergenic 40.0%
CATATGTGAAGTGGTTGACT+TGG + chr3_4:14631089-14631108 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr3_4:14631295-14631314 Msa0491720:intron 40.0%
ATCAAAAGCCTCAACAAACG+AGG + chr3_4:14632216-14632235 None:intergenic 40.0%
CTCGCTTATCTCAAAATTGC+AGG - chr3_4:14632247-14632266 Msa0491720:intron 40.0%
TACAAGACATGCTATTAGGG+TGG - chr3_4:14632544-14632563 Msa0491720:intron 40.0%
! ATGCTATTAGGGTGGCTTTT+AGG - chr3_4:14632552-14632571 Msa0491720:intron 40.0%
! TACCTGCTTCTAAAGGAACT+CGG + chr3_4:14632910-14632929 None:intergenic 40.0%
GTAAGCCATCCTATGATCAG+TGG + chr3_4:14627947-14627966 None:intergenic 45.0%
GAGAACCTGGGTTCAATTTC+TGG + chr3_4:14628354-14628373 None:intergenic 45.0%
TTGGTATTCGGTCATAGGAC+CGG - chr3_4:14628575-14628594 Msa0491720:CDS 45.0%
TGACCATTAGTGCGACTCTT+AGG - chr3_4:14629654-14629673 Msa0491720:intron 45.0%
!! AGATTCGGTGGTGAAAGAGT+AGG + chr3_4:14629794-14629813 None:intergenic 45.0%
GATTGTGAGGGAGAGAGATT+CGG + chr3_4:14629809-14629828 None:intergenic 45.0%
!! CACACTCGAGTTGATTGTGA+GGG + chr3_4:14629821-14629840 None:intergenic 45.0%
!! GTTGCTAGTCTTGGAGTCAT+TGG - chr3_4:14630524-14630543 Msa0491720:intron 45.0%
!!! CTCGTTTTGGTTTTGGTCCT+TGG - chr3_4:14630682-14630701 Msa0491720:intron 45.0%
TCATCACAAAAGTGGGACCA+AGG + chr3_4:14630702-14630721 None:intergenic 45.0%
! GTGCATTGGCATATGTGAAG+TGG + chr3_4:14631098-14631117 None:intergenic 45.0%
TTGGCATCTTTGAGCCTGTT+TGG + chr3_4:14632394-14632413 None:intergenic 45.0%
! AACCGAGTTCCTTTAGAAGC+AGG - chr3_4:14632905-14632924 Msa0491720:CDS 45.0%
! GTTCCTTTAGAAGCAGGTAG+AGG - chr3_4:14632911-14632930 Msa0491720:CDS 45.0%
!!! ATATATTTTTTTTTTGTTTA+AGG - chr3_4:14629678-14629697 Msa0491720:intron 5.0%
!! ATATTAAATTATATCATATT+AGG + chr3_4:14632490-14632509 None:intergenic 5.0%
TGCTCTCTATGTGCTCTCCA+AGG - chr3_4:14628014-14628033 Msa0491720:intron 50.0%
TCCACCCAGAAATTGAACCC+AGG - chr3_4:14628346-14628365 Msa0491720:intron 50.0%
! ACCTGGGTTCAATTTCTGGG+TGG + chr3_4:14628350-14628369 None:intergenic 50.0%
!! GCACACTCGAGTTGATTGTG+AGG + chr3_4:14629822-14629841 None:intergenic 50.0%
TGGCATCTCACCCTGATACA+AGG - chr3_4:14630060-14630079 Msa0491720:intron 50.0%
!! GCTAGTCTTGGAGTCATTGG+TGG - chr3_4:14630527-14630546 Msa0491720:intron 50.0%
! AGTCATTGGTGGCTCGATGA+AGG - chr3_4:14630538-14630557 Msa0491720:intron 50.0%
AGCCTCAACAAACGAGGTGA+GGG + chr3_4:14632210-14632229 None:intergenic 50.0%
AAGCCTCAACAAACGAGGTG+AGG + chr3_4:14632211-14632230 None:intergenic 50.0%
CCTCCTCTACCTGCTTCTAA+AGG + chr3_4:14632917-14632936 None:intergenic 50.0%
! CCTTTAGAAGCAGGTAGAGG+AGG - chr3_4:14632914-14632933 Msa0491720:CDS 50.0%
TGTGAGGGAGAGAGATTCGG+TGG + chr3_4:14629806-14629825 None:intergenic 55.0%
CTCAACAAACGAGGTGAGGG+TGG + chr3_4:14632207-14632226 None:intergenic 55.0%
! CACCCTCACCTCGTTTGTTG+AGG - chr3_4:14632205-14632224 Msa0491720:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 14627859 14632976 14627859 ID=Msa0491720;Name=Msa0491720
chr3_4 mRNA 14627859 14632976 14627859 ID=Msa0491720-mRNA-1;Parent=Msa0491720;Name=Msa0491720-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.88|1|1|9|0|323
chr3_4 exon 14632800 14632976 14632800 ID=Msa0491720-mRNA-1:exon:4332;Parent=Msa0491720-mRNA-1
chr3_4 exon 14631697 14631768 14631697 ID=Msa0491720-mRNA-1:exon:4331;Parent=Msa0491720-mRNA-1
chr3_4 exon 14630973 14631062 14630973 ID=Msa0491720-mRNA-1:exon:4330;Parent=Msa0491720-mRNA-1
chr3_4 exon 14630737 14630779 14630737 ID=Msa0491720-mRNA-1:exon:4329;Parent=Msa0491720-mRNA-1
chr3_4 exon 14630276 14630382 14630276 ID=Msa0491720-mRNA-1:exon:4328;Parent=Msa0491720-mRNA-1
chr3_4 exon 14628863 14628958 14628863 ID=Msa0491720-mRNA-1:exon:4327;Parent=Msa0491720-mRNA-1
chr3_4 exon 14628567 14628757 14628567 ID=Msa0491720-mRNA-1:exon:4326;Parent=Msa0491720-mRNA-1
chr3_4 exon 14628403 14628472 14628403 ID=Msa0491720-mRNA-1:exon:4325;Parent=Msa0491720-mRNA-1
chr3_4 exon 14627859 14627984 14627859 ID=Msa0491720-mRNA-1:exon:4324;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14632800 14632976 14632800 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14631697 14631768 14631697 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14630973 14631062 14630973 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14630737 14630779 14630737 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14630276 14630382 14630276 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14628863 14628958 14628863 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14628567 14628757 14628567 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14628403 14628472 14628403 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
chr3_4 CDS 14627859 14627984 14627859 ID=Msa0491720-mRNA-1:cds;Parent=Msa0491720-mRNA-1
Gene Sequence

>Msa0491720

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGCTAATATGCCTTTATATTTATATCCATTCCTTAAAACAACAAGCAAGTTAACACAGTTTGAGAATTTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAATTGTTGCAACATTTATAATTTTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAAAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGAGGAATTGATGATATTGTAGGGCCATCATTATCAAGAAAATGA

Protein sequence

>Msa0491720

MAHFTPQSLSTKNNASFIAFPGDSTQSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLTQFENLRVASLGVIGGSMKVNTKEVIGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRAKVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRGGIDDIVGPSLSRK*