AlfalfaGEDB | Msa0492170

M. sativa cultivar zhongmu-4 / Msa0492170

KEGG: -
GO: GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492170	XP_013461773.1	89.720	321	27	1	1	315	1	321	0.0	600

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492170	sp\|Q7XHI9\|BH084_ARATH	50.230	217	74	6	109	307	121	321	2.66e-55	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492170	A0A072V390	89.720	321	27	1	1	315	1	321	0.0	600

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TFs/TRs:

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Gene ID	Type	Classification
Msa0492170	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492170	MtrunA17_Chr3g0134741	89.720	321	27	1	1	315	1	321	0.0	600
Msa0492170	MtrunA17_Chr1g0152651	49.176	364	104	12	1	298	1	349	6.96e-86	262
Msa0492170	MtrunA17_Chr5g0393721	40.237	338	151	15	1	313	1	312	1.41e-54	181
Msa0492170	MtrunA17_Chr1g0207301	51.445	173	63	4	147	308	211	373	3.89e-46	160
Msa0492170	MtrunA17_Chr1g0207311	78.161	87	19	0	222	308	195	281	2.18e-43	150
Msa0492170	MtrunA17_Chr5g0435021	58.571	70	29	0	222	291	217	286	1.59e-22	95.5
Msa0492170	MtrunA17_Chr4g0074161	52.632	76	36	0	222	297	205	280	2.44e-18	84.7
Msa0492170	MtrunA17_Chr8g0384141	60.606	66	25	1	222	287	114	178	1.11e-17	81.3
Msa0492170	MtrunA17_Chr1g0190731	46.341	82	44	0	222	303	192	273	3.58e-16	78.2
Msa0492170	MtrunA17_Chr3g0134001	53.968	63	29	0	223	285	171	233	6.97e-16	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492170	AT2G14760.1	50.230	217	74	6	109	307	121	321	2.70e-56	185
Msa0492170	AT4G33880.1	59.119	159	62	1	150	305	190	348	9.92e-55	182
Msa0492170	AT1G27740.1	61.486	148	40	3	162	308	121	252	4.09e-53	175
Msa0492170	AT2G14760.3	47.391	230	74	7	109	307	121	334	1.18e-52	176
Msa0492170	AT5G43175.1	57.931	145	52	3	165	308	81	217	7.91e-46	155
Msa0492170	AT5G37800.1	61.039	77	29	1	216	291	193	269	1.45e-23	98.6
Msa0492170	AT1G66470.1	52.809	89	42	0	203	291	175	263	2.81e-23	97.8
Msa0492170	AT2G24260.2	51.613	93	43	1	207	297	17	109	1.07e-21	92.4
Msa0492170	AT4G30980.1	47.573	103	47	2	189	290	101	197	3.46e-21	92.0
Msa0492170	AT4G30980.2	47.573	103	47	2	189	290	149	245	4.60e-21	92.4

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Find 58 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTGTGAGGAAAACAG+TGG	0.786485	3_4:-15464496	Msa0492170:CDS
AACCTAAGTTGAAGCTGAAA+AGG	0.448825	3_4:-15464939	Msa0492170:CDS
AAGATAAGATAAACTCATGT+GGG	0.556515	3_4:-15464882	Msa0492170:CDS
AAGTCCATTATAAGCAATTG+GGG	0.617408	3_4:+15463761	None:intergenic
ACATTGGATTCAATCTCAAC+CGG	0.458816	3_4:-15463737	Msa0492170:CDS
ACCCTTGCATAGAGGCTTTG+AGG	0.393741	3_4:+15464391	None:intergenic
ACTCATATATTACCTTGATT+TGG	0.291701	3_4:+15463925	None:intergenic
ACTGTGTCTCTCAACTCCAA+TGG	0.558276	3_4:-15464448	Msa0492170:CDS
AGAGGAGCAAAACATGTGTG+AGG	0.671006	3_4:-15464506	Msa0492170:CDS
AGAGTCCAAGAAGAGCAAGA+AGG	0.635660	3_4:-15464602	Msa0492170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTGCTTGGAGAAAATAAT+GGG	-	chr3_4:15463828-15463847	Msa0492170:intron	30.0%
GAAGATAAGATAAACTCATG+TGG	-	chr3_4:15464121-15464140	Msa0492170:CDS	30.0%
CTGACAAATTAATTAACCGA+TGG	+	chr3_4:15464223-15464242	None:intergenic	30.0%
ACTAATTAAAGTGGTACTAG+TGG	+	chr3_4:15464323-15464342	None:intergenic	30.0%
ACAGAATGGAGATTAAAAAG+AGG	+	chr3_4:15464684-15464703	None:intergenic	30.0%
TGCTATATACTTCATTCACT+TGG	+	chr3_4:15464801-15464820	None:intergenic	30.0%
CTACAAAATCTTGTACCAAA+TGG	-	chr3_4:15464894-15464913	Msa0492170:CDS	30.0%
TAAATTACCTTTGTCCCATT+TGG	+	chr3_4:15464912-15464931	None:intergenic	30.0%
AAGTCCATTATAAGCAATTG+GGG	+	chr3_4:15465246-15465265	None:intergenic	30.0%
CAAGTCCATTATAAGCAATT+GGG	+	chr3_4:15465247-15465266	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	15463716	15465310	15463716	ID=Msa0492170;Name=Msa0492170
chr3_4	mRNA	15463716	15465310	15463716	ID=Msa0492170-mRNA-1;Parent=Msa0492170;Name=Msa0492170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|5\|0\|315
chr3_4	exon	15464849	15465310	15464849	ID=Msa0492170-mRNA-1:exon:4533;Parent=Msa0492170-mRNA-1
chr3_4	exon	15464393	15464647	15464393	ID=Msa0492170-mRNA-1:exon:4532;Parent=Msa0492170-mRNA-1
chr3_4	exon	15464103	15464168	15464103	ID=Msa0492170-mRNA-1:exon:4531;Parent=Msa0492170-mRNA-1
chr3_4	exon	15463938	15464003	15463938	ID=Msa0492170-mRNA-1:exon:4530;Parent=Msa0492170-mRNA-1
chr3_4	exon	15463716	15463814	15463716	ID=Msa0492170-mRNA-1:exon:4529;Parent=Msa0492170-mRNA-1
chr3_4	CDS	15464849	15465310	15464849	ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4	CDS	15464393	15464647	15464393	ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4	CDS	15464103	15464168	15464103	ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4	CDS	15463938	15464003	15463938	ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4	CDS	15463716	15463814	15463716	ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1

Gene Sequence

>Msa0492170

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACCAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAAAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCTAGTGGTTATACCTCAGAGGAGCAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCATCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACCGGAAGATTTCTCCACCACCATGA

Protein sequence

>Msa0492170

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSPESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKISPPP*