AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492170 MtrunA17_Chr3g0134741 89.720 321 27 1 1 315 1 321 0.0 600
Msa0492170 MtrunA17_Chr1g0152651 49.176 364 104 12 1 298 1 349 6.96e-86 262
Msa0492170 MtrunA17_Chr5g0393721 40.237 338 151 15 1 313 1 312 1.41e-54 181
Msa0492170 MtrunA17_Chr1g0207301 51.445 173 63 4 147 308 211 373 3.89e-46 160
Msa0492170 MtrunA17_Chr1g0207311 78.161 87 19 0 222 308 195 281 2.18e-43 150
Msa0492170 MtrunA17_Chr5g0435021 58.571 70 29 0 222 291 217 286 1.59e-22 95.5
Msa0492170 MtrunA17_Chr4g0074161 52.632 76 36 0 222 297 205 280 2.44e-18 84.7
Msa0492170 MtrunA17_Chr8g0384141 60.606 66 25 1 222 287 114 178 1.11e-17 81.3
Msa0492170 MtrunA17_Chr1g0190731 46.341 82 44 0 222 303 192 273 3.58e-16 78.2
Msa0492170 MtrunA17_Chr3g0134001 53.968 63 29 0 223 285 171 233 6.97e-16 76.3
Msa0492170 MtrunA17_Chr7g0243041 54.545 55 25 0 230 284 33 87 8.05e-15 70.9
Msa0492170 MtrunA17_Chr1g0153241 39.241 79 48 0 222 300 84 162 8.54e-14 70.1
Msa0492170 MtrunA17_Chr1g0193321 45.455 66 36 0 221 286 460 525 3.15e-13 70.5
Msa0492170 MtrunA17_Chr4g0014771 53.030 66 30 1 222 286 117 182 9.32e-13 65.9
Msa0492170 MtrunA17_Chr8g0363921 31.847 157 88 5 139 286 69 215 2.54e-12 66.2
Msa0492170 MtrunA17_Chr1g0182791 43.939 66 37 0 221 286 315 380 4.24e-12 66.6
Msa0492170 MtrunA17_Chr4g0032951 39.823 113 66 2 175 286 308 419 4.56e-12 66.2
Msa0492170 MtrunA17_Chr3g0095391 30.822 146 89 2 154 292 233 373 4.61e-12 66.6
Msa0492170 MtrunA17_Chr6g0484271 44.318 88 44 2 204 286 132 219 6.13e-12 65.1
Msa0492170 MtrunA17_Chr1g0174271 54.545 66 29 1 222 286 297 362 1.04e-11 65.1
Msa0492170 MtrunA17_Chr7g0234761 30.526 190 116 5 98 286 207 381 1.05e-11 65.5
Msa0492170 MtrunA17_Chr8g0339091 53.125 64 29 1 224 286 292 355 1.34e-11 65.1
Msa0492170 MtrunA17_Chr5g0402031 42.188 64 37 0 236 299 118 181 1.39e-11 64.7
Msa0492170 MtrunA17_Chr1g0152131 51.562 64 30 1 224 286 261 324 1.98e-11 64.3
Msa0492170 MtrunA17_Chr7g0270871 46.269 67 34 1 220 286 201 265 2.15e-11 63.9
Msa0492170 MtrunA17_Chr5g0415291 50.000 64 31 1 224 286 113 176 2.59e-11 62.8
Msa0492170 MtrunA17_Chr4g0035101 51.562 64 30 1 224 286 144 207 3.91e-11 63.2
Msa0492170 MtrunA17_Chr7g0231461 50.000 60 28 1 226 285 302 359 5.39e-11 63.2
Msa0492170 MtrunA17_Chr3g0131771 53.125 64 29 1 224 286 148 211 5.92e-11 62.4
Msa0492170 MtrunA17_Chr3g0144641 51.562 64 30 1 224 286 192 255 6.52e-11 62.8
Msa0492170 MtrunA17_Chr5g0421111 51.562 64 30 1 224 286 366 429 6.65e-11 63.2
Msa0492170 MtrunA17_Chr2g0329041 51.562 64 30 1 222 284 331 394 7.18e-11 62.8
Msa0492170 MtrunA17_Chr8g0365941 51.562 64 30 1 224 286 306 369 8.34e-11 62.8
Msa0492170 MtrunA17_Chr7g0262691 36.559 93 54 1 191 283 225 312 8.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492170 AT2G14760.1 50.230 217 74 6 109 307 121 321 2.70e-56 185
Msa0492170 AT4G33880.1 59.119 159 62 1 150 305 190 348 9.92e-55 182
Msa0492170 AT1G27740.1 61.486 148 40 3 162 308 121 252 4.09e-53 175
Msa0492170 AT2G14760.3 47.391 230 74 7 109 307 121 334 1.18e-52 176
Msa0492170 AT5G43175.1 57.931 145 52 3 165 308 81 217 7.91e-46 155
Msa0492170 AT5G37800.1 61.039 77 29 1 216 291 193 269 1.45e-23 98.6
Msa0492170 AT1G66470.1 52.809 89 42 0 203 291 175 263 2.81e-23 97.8
Msa0492170 AT2G24260.2 51.613 93 43 1 207 297 17 109 1.07e-21 92.4
Msa0492170 AT4G30980.1 47.573 103 47 2 189 290 101 197 3.46e-21 92.0
Msa0492170 AT4G30980.2 47.573 103 47 2 189 290 149 245 4.60e-21 92.4
Msa0492170 AT2G24260.1 51.613 93 43 1 207 297 120 212 7.04e-21 92.0
Msa0492170 AT5G58010.1 46.875 96 47 2 222 313 98 193 2.21e-19 87.0
Msa0492170 AT3G21330.1 52.381 63 30 0 223 285 269 331 2.69e-15 76.3
Msa0492170 AT5G50915.1 34.637 179 77 7 170 314 57 229 7.86e-15 73.9
Msa0492170 AT5G50915.2 34.637 179 77 7 170 314 57 229 7.86e-15 73.9
Msa0492170 AT5G50915.3 34.637 179 77 7 170 314 57 229 9.03e-15 73.6
Msa0492170 AT5G50915.4 34.637 179 77 7 170 314 57 229 9.03e-15 73.6
Msa0492170 AT5G01305.1 49.180 61 31 0 222 282 36 96 1.31e-14 71.2
Msa0492170 AT4G00120.1 50.000 54 27 0 232 285 121 174 3.49e-14 70.5
Msa0492170 AT1G25330.1 50.617 81 39 1 224 303 105 185 4.29e-13 67.8
Msa0492170 AT1G09530.3 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT1G09530.2 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT1G09530.5 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT1G09530.1 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT1G09530.4 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT1G09530.6 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0492170 AT4G00050.2 39.423 104 51 3 183 286 77 168 9.90e-13 67.8
Msa0492170 AT1G51140.1 53.846 65 29 1 222 285 303 367 1.15e-12 68.6
Msa0492170 AT2G20180.7 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0492170 AT2G20180.1 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0492170 AT2G20180.5 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0492170 AT2G20180.4 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0492170 AT2G20180.6 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0492170 AT2G20180.2 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0492170 AT2G20180.3 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0492170 AT1G18400.2 54.688 64 28 1 224 286 146 209 1.69e-12 66.6
Msa0492170 AT1G18400.1 54.688 64 28 1 224 286 146 209 2.17e-12 66.6
Msa0492170 AT4G00050.1 39.423 104 51 3 183 286 179 270 2.22e-12 67.8
Msa0492170 AT4G00050.3 39.423 104 51 3 183 286 179 270 2.46e-12 67.4
Msa0492170 AT2G46970.2 30.645 124 80 2 195 313 165 287 4.21e-12 66.6
Msa0492170 AT4G09180.1 48.529 68 34 1 222 288 183 250 4.63e-12 65.5
Msa0492170 AT2G46970.1 30.645 124 80 2 195 313 196 318 4.69e-12 66.6
Msa0492170 AT2G46970.3 30.645 124 80 2 195 313 174 296 4.79e-12 66.6
Msa0492170 AT1G35460.1 50.000 66 32 1 222 286 180 245 8.82e-12 64.7
Msa0492170 AT4G28790.1 45.946 74 39 1 227 300 275 347 1.17e-11 65.5
Msa0492170 AT1G73830.1 51.562 64 30 1 224 286 148 211 1.24e-11 64.3
Msa0492170 AT1G73830.2 51.562 64 30 1 224 286 148 211 1.25e-11 64.3
Msa0492170 AT4G28815.2 38.776 98 55 2 206 298 47 144 1.29e-11 63.9
Msa0492170 AT4G28815.1 38.776 98 55 2 206 298 123 220 2.00e-11 64.3
Msa0492170 AT2G18300.2 36.434 129 73 3 159 286 129 249 2.19e-11 64.3
Msa0492170 AT2G18300.1 36.434 129 73 3 159 286 129 249 2.31e-11 64.3
Msa0492170 AT1G68920.3 32.237 152 101 2 136 286 216 366 2.36e-11 64.7
Msa0492170 AT2G18300.3 36.434 129 73 3 159 286 129 249 2.44e-11 64.3
Msa0492170 AT5G67110.1 40.404 99 45 3 219 315 81 167 2.44e-11 62.8
Msa0492170 AT3G07340.1 53.125 64 29 1 224 286 259 322 2.91e-11 64.3
Msa0492170 AT3G07340.2 53.125 64 29 1 224 286 259 322 3.11e-11 64.3
Msa0492170 AT4G36930.1 31.034 116 79 1 200 314 167 282 3.32e-11 63.9
Msa0492170 AT1G26260.3 53.125 64 29 1 224 286 173 236 3.85e-11 63.5
Msa0492170 AT2G42280.1 52.308 65 30 1 222 285 278 342 4.08e-11 63.5
Msa0492170 AT5G48560.1 53.125 64 29 1 224 286 302 365 4.11e-11 63.9
Msa0492170 AT1G26260.4 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0492170 AT1G26260.1 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0492170 AT1G26260.6 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0492170 AT1G26260.2 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0492170 AT5G48560.2 53.125 64 29 1 224 286 302 365 4.51e-11 63.9
Msa0492170 AT1G26260.5 53.125 64 29 1 224 286 202 265 4.70e-11 63.5
Msa0492170 AT1G59640.1 50.000 64 31 1 224 286 137 200 4.96e-11 62.8
Msa0492170 AT1G10120.2 51.562 64 30 1 224 286 207 270 5.03e-11 63.5
Msa0492170 AT1G10120.1 51.562 64 30 1 224 286 207 270 5.03e-11 63.5
Msa0492170 AT2G20180.8 37.079 89 51 1 196 284 256 339 5.81e-11 63.2
Msa0492170 AT4G34530.1 51.562 64 30 1 224 286 173 236 7.56e-11 62.8
Msa0492170 AT3G23690.1 50.000 64 31 1 224 286 192 255 9.04e-11 62.8

Find 58 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3_4:+15464597 None:intergenic
TGAGTATTATGATTACTTTC+TGG 0.228641 3_4:+15465051 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3_4:-15464914 Msa0492170:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3_4:+15463949 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3_4:+15463925 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3_4:+15464904 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3_4:+15464095 None:intergenic
TCAAGTCCATTATAAGCAAT+TGG 0.332783 3_4:+15463759 None:intergenic
TATGCCCCAATTGCTTATAA+TGG 0.346115 3_4:-15463765 Msa0492170:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3_4:-15465177 Msa0492170:CDS
CAAGTCCATTATAAGCAATT+GGG 0.382500 3_4:+15463760 None:intergenic
CTACAAAATCTTGTACCAAA+TGG 0.385534 3_4:-15464110 Msa0492170:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3_4:+15465267 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3_4:+15464391 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3_4:-15464109 Msa0492170:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3_4:-15465168 Msa0492170:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3_4:-15464553 Msa0492170:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3_4:-15465176 Msa0492170:CDS
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3_4:-15464939 Msa0492170:CDS
ACATTGGATTCAATCTCAAC+CGG 0.458816 3_4:-15463737 Msa0492170:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3_4:-15465130 Msa0492170:CDS
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3_4:-15465189 Msa0492170:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3_4:-15463753 Msa0492170:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3_4:-15463937 Msa0492170:intron
TATCCCTGATGATGGCGAAT+GGG 0.522217 3_4:-15465271 Msa0492170:CDS
ATGGTGGTGGAGAAATCTTC+CGG 0.539717 3_4:+15463718 None:intergenic
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3_4:-15464393 Msa0492170:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3_4:+15465123 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.545545 3_4:-15465279 Msa0492170:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3_4:-15465129 Msa0492170:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3_4:-15464882 Msa0492170:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3_4:-15464448 Msa0492170:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3_4:+15464549 None:intergenic
TGATAATTACCCTTGCATAG+AGG 0.574539 3_4:+15464383 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3_4:+15465124 None:intergenic
CTATCCCTGATGATGGCGAA+TGG 0.588808 3_4:-15465272 Msa0492170:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3_4:-15464883 Msa0492170:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3_4:+15465217 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3_4:-15464392 Msa0492170:intron
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3_4:+15465137 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3_4:-15464102 Msa0492170:intron
CTCTGAGGTATAACCACTAG+AGG 0.615332 3_4:+15464525 None:intergenic
GAAAGTAATCATAATACTCA+AGG 0.616654 3_4:-15465048 Msa0492170:CDS
AAGTCCATTATAAGCAATTG+GGG 0.617408 3_4:+15463761 None:intergenic
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3_4:+15465125 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3_4:-15464427 Msa0492170:CDS
CTCTAGTGGTTATACCTCAG+AGG 0.631424 3_4:-15464524 Msa0492170:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3_4:-15463791 Msa0492170:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3_4:+15465201 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3_4:-15464602 Msa0492170:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3_4:+15465204 None:intergenic
ATTCCCATTCGCCATCATCA+GGG 0.639610 3_4:+15465268 None:intergenic
GTAGATGGACATACCTCTAG+TGG 0.644629 3_4:-15464538 Msa0492170:CDS
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3_4:+15465241 None:intergenic
GGTTGATAGAAATGAAAACA+AGG 0.650583 3_4:-15464581 Msa0492170:CDS
AGAGGAGCAAAACATGTGTG+AGG 0.671006 3_4:-15464506 Msa0492170:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3_4:-15464493 Msa0492170:CDS
AACATGTGTGAGGAAAACAG+TGG 0.786485 3_4:-15464496 Msa0492170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATTACTAATTAAAG+TGG + chr3_4:15464332-15464351 None:intergenic 15.0%
!!! AATAATGATTTGAAATTTTG+TGG - chr3_4:15464343-15464362 Msa0492170:intron 15.0%
!! ATCATTATTACTAATTAAAG+TGG + chr3_4:15464332-15464351 None:intergenic 15.0%
!!! AATAATGATTTGAAATTTTG+TGG - chr3_4:15464343-15464362 Msa0492170:intron 15.0%
!!! TTTGAATTTTACAGAAAAGA+AGG - chr3_4:15464844-15464863 Msa0492170:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG - chr3_4:15464845-15464864 Msa0492170:intron 20.0%
!!! AATGTTTTGCATTTTAAAGA+GGG - chr3_4:15464942-15464961 Msa0492170:CDS 20.0%
!! GAGATGTATAATTTGATATA+TGG - chr3_4:15464986-15465005 Msa0492170:CDS 20.0%
!! TGTATAATTTGATATATGGA+TGG - chr3_4:15464990-15465009 Msa0492170:CDS 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG - chr3_4:15465128-15465147 Msa0492170:CDS 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG - chr3_4:15464844-15464863 Msa0492170:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG - chr3_4:15464845-15464864 Msa0492170:intron 20.0%
!!! AATGTTTTGCATTTTAAAGA+GGG - chr3_4:15464942-15464961 Msa0492170:CDS 20.0%
!! GAGATGTATAATTTGATATA+TGG - chr3_4:15464986-15465005 Msa0492170:CDS 20.0%
!! TGTATAATTTGATATATGGA+TGG - chr3_4:15464990-15465009 Msa0492170:CDS 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG - chr3_4:15465128-15465147 Msa0492170:CDS 20.0%
! TGAGTATTATGATTACTTTC+TGG + chr3_4:15463956-15463975 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG - chr3_4:15463956-15463975 Msa0492170:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG - chr3_4:15464122-15464141 Msa0492170:CDS 25.0%
! TCATATGATATTTACTCCAT+CGG - chr3_4:15464204-15464223 Msa0492170:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG - chr3_4:15464228-15464247 Msa0492170:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG - chr3_4:15464259-15464278 Msa0492170:intron 25.0%
! AAGAGGAATAGTTAAACAAA+AGG + chr3_4:15464667-15464686 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG - chr3_4:15464895-15464914 Msa0492170:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+AGG - chr3_4:15464941-15464960 Msa0492170:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG + chr3_4:15465082-15465101 None:intergenic 25.0%
! TGAGTATTATGATTACTTTC+TGG + chr3_4:15463956-15463975 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG - chr3_4:15463956-15463975 Msa0492170:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG - chr3_4:15464122-15464141 Msa0492170:CDS 25.0%
! TCATATGATATTTACTCCAT+CGG - chr3_4:15464204-15464223 Msa0492170:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG - chr3_4:15464228-15464247 Msa0492170:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG - chr3_4:15464259-15464278 Msa0492170:intron 25.0%
! AAGAGGAATAGTTAAACAAA+AGG + chr3_4:15464667-15464686 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG - chr3_4:15464895-15464914 Msa0492170:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+AGG - chr3_4:15464941-15464960 Msa0492170:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG + chr3_4:15465082-15465101 None:intergenic 25.0%
TTCTGCTTGGAGAAAATAAT+GGG - chr3_4:15463828-15463847 Msa0492170:intron 30.0%
!! TTTTGATTGTTCTGATCATG+TGG - chr3_4:15463994-15464013 Msa0492170:intron 30.0%
GAAGATAAGATAAACTCATG+TGG - chr3_4:15464121-15464140 Msa0492170:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG + chr3_4:15464223-15464242 None:intergenic 30.0%
ACTAATTAAAGTGGTACTAG+TGG + chr3_4:15464323-15464342 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG - chr3_4:15464357-15464376 Msa0492170:intron 30.0%
!! GGTTGATAGAAATGAAAACA+AGG - chr3_4:15464423-15464442 Msa0492170:CDS 30.0%
ACAGAATGGAGATTAAAAAG+AGG + chr3_4:15464684-15464703 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG + chr3_4:15464801-15464820 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG - chr3_4:15464894-15464913 Msa0492170:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG + chr3_4:15464912-15464931 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG - chr3_4:15464915-15464934 Msa0492170:CDS 30.0%
AAGTCCATTATAAGCAATTG+GGG + chr3_4:15465246-15465265 None:intergenic 30.0%
CAAGTCCATTATAAGCAATT+GGG + chr3_4:15465247-15465266 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG + chr3_4:15465248-15465267 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG - chr3_4:15463828-15463847 Msa0492170:intron 30.0%
!! TTTTGATTGTTCTGATCATG+TGG - chr3_4:15463994-15464013 Msa0492170:intron 30.0%
GAAGATAAGATAAACTCATG+TGG - chr3_4:15464121-15464140 Msa0492170:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG + chr3_4:15464223-15464242 None:intergenic 30.0%
ACTAATTAAAGTGGTACTAG+TGG + chr3_4:15464323-15464342 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG - chr3_4:15464357-15464376 Msa0492170:intron 30.0%
!! GGTTGATAGAAATGAAAACA+AGG - chr3_4:15464423-15464442 Msa0492170:CDS 30.0%
ACAGAATGGAGATTAAAAAG+AGG + chr3_4:15464684-15464703 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG + chr3_4:15464801-15464820 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG - chr3_4:15464894-15464913 Msa0492170:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG + chr3_4:15464912-15464931 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG - chr3_4:15464915-15464934 Msa0492170:CDS 30.0%
AAGTCCATTATAAGCAATTG+GGG + chr3_4:15465246-15465265 None:intergenic 30.0%
CAAGTCCATTATAAGCAATT+GGG + chr3_4:15465247-15465266 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG + chr3_4:15465248-15465267 None:intergenic 30.0%
CTTCAGTTGCAAATATTCTG+CGG + chr3_4:15463766-15463785 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG + chr3_4:15463803-15463822 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG + chr3_4:15463806-15463825 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG - chr3_4:15463827-15463846 Msa0492170:intron 35.0%
! GGAGAAAATAATGGGAACTT+TGG - chr3_4:15463836-15463855 Msa0492170:intron 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG + chr3_4:15464066-15464085 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG - chr3_4:15464065-15464084 Msa0492170:intron 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG + chr3_4:15464070-15464089 None:intergenic 35.0%
CATATTACAATCGTCTCTCA+TGG + chr3_4:15464299-15464318 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG + chr3_4:15464575-15464594 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG + chr3_4:15464624-15464643 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG + chr3_4:15464723-15464742 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG - chr3_4:15464723-15464742 Msa0492170:intron 35.0%
ATATATGGATGGTCATACAC+AGG - chr3_4:15465001-15465020 Msa0492170:CDS 35.0%
GCTGCAGAAATTTCACATAT+TGG + chr3_4:15465058-15465077 None:intergenic 35.0%
TATGCCCCAATTGCTTATAA+TGG - chr3_4:15465239-15465258 Msa0492170:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG - chr3_4:15465251-15465270 Msa0492170:CDS 35.0%
ACATTGGATTCAATCTCAAC+CGG - chr3_4:15465267-15465286 Msa0492170:CDS 35.0%
CTTCAGTTGCAAATATTCTG+CGG + chr3_4:15463766-15463785 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG + chr3_4:15463803-15463822 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG + chr3_4:15463806-15463825 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG - chr3_4:15463827-15463846 Msa0492170:intron 35.0%
! GGAGAAAATAATGGGAACTT+TGG - chr3_4:15463836-15463855 Msa0492170:intron 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG + chr3_4:15464066-15464085 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG - chr3_4:15464065-15464084 Msa0492170:intron 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG + chr3_4:15464070-15464089 None:intergenic 35.0%
CATATTACAATCGTCTCTCA+TGG + chr3_4:15464299-15464318 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG + chr3_4:15464575-15464594 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG + chr3_4:15464624-15464643 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG + chr3_4:15464723-15464742 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG - chr3_4:15464723-15464742 Msa0492170:intron 35.0%
ATATATGGATGGTCATACAC+AGG - chr3_4:15465001-15465020 Msa0492170:CDS 35.0%
GCTGCAGAAATTTCACATAT+TGG + chr3_4:15465058-15465077 None:intergenic 35.0%
TATGCCCCAATTGCTTATAA+TGG - chr3_4:15465239-15465258 Msa0492170:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG - chr3_4:15465251-15465270 Msa0492170:CDS 35.0%
ACATTGGATTCAATCTCAAC+CGG - chr3_4:15465267-15465286 Msa0492170:CDS 35.0%
TCTACATGCACCTGAAATTC+TGG + chr3_4:15464103-15464122 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG + chr3_4:15464150-15464169 None:intergenic 40.0%
TGCATCTTTGCACCTGAATT+TGG + chr3_4:15464372-15464391 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG + chr3_4:15464410-15464429 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG + chr3_4:15464458-15464477 None:intergenic 40.0%
AACATGTGTGAGGAAAACAG+TGG - chr3_4:15464508-15464527 Msa0492170:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG - chr3_4:15464577-15464596 Msa0492170:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG + chr3_4:15464698-15464717 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG - chr3_4:15464697-15464716 Msa0492170:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG - chr3_4:15464715-15464734 Msa0492170:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG - chr3_4:15464719-15464738 Msa0492170:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG - chr3_4:15464902-15464921 Msa0492170:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG - chr3_4:15465067-15465086 Msa0492170:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG - chr3_4:15465213-15465232 Msa0492170:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG + chr3_4:15464103-15464122 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG + chr3_4:15464150-15464169 None:intergenic 40.0%
TGCATCTTTGCACCTGAATT+TGG + chr3_4:15464372-15464391 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG + chr3_4:15464410-15464429 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG + chr3_4:15464458-15464477 None:intergenic 40.0%
AACATGTGTGAGGAAAACAG+TGG - chr3_4:15464508-15464527 Msa0492170:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG - chr3_4:15464577-15464596 Msa0492170:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG + chr3_4:15464698-15464717 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG - chr3_4:15464697-15464716 Msa0492170:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG - chr3_4:15464715-15464734 Msa0492170:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG - chr3_4:15464719-15464738 Msa0492170:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG - chr3_4:15464902-15464921 Msa0492170:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG - chr3_4:15465067-15465086 Msa0492170:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG - chr3_4:15465213-15465232 Msa0492170:CDS 40.0%
!! TATCCCTGATGATGGCGAAT+GGG - chr3_4:15463733-15463752 Msa0492170:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG + chr3_4:15463739-15463758 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG + chr3_4:15463790-15463809 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG + chr3_4:15463825-15463844 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG + chr3_4:15463870-15463889 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG + chr3_4:15463883-15463902 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG + chr3_4:15463884-15463903 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG - chr3_4:15464090-15464109 Msa0492170:intron 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG + chr3_4:15464151-15464170 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG + chr3_4:15464163-15464182 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG - chr3_4:15464402-15464421 Msa0492170:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG - chr3_4:15464451-15464470 Msa0492170:CDS 45.0%
GTAGATGGACATACCTCTAG+TGG - chr3_4:15464466-15464485 Msa0492170:CDS 45.0%
!! CTCTGAGGTATAACCACTAG+AGG + chr3_4:15464482-15464501 None:intergenic 45.0%
CTCTAGTGGTTATACCTCAG+AGG - chr3_4:15464480-15464499 Msa0492170:CDS 45.0%
! ACACATGTTTTGCTCCTCTG+AGG + chr3_4:15464497-15464516 None:intergenic 45.0%
AGAGGAGCAAAACATGTGTG+AGG - chr3_4:15464498-15464517 Msa0492170:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG - chr3_4:15464511-15464530 Msa0492170:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG - chr3_4:15464556-15464575 Msa0492170:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG - chr3_4:15464611-15464630 Msa0492170:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG - chr3_4:15464612-15464631 Msa0492170:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG + chr3_4:15464710-15464729 None:intergenic 45.0%
!! ATGGTGGTGGAGAAATCTTC+CGG + chr3_4:15465289-15465308 None:intergenic 45.0%
!! TATCCCTGATGATGGCGAAT+GGG - chr3_4:15463733-15463752 Msa0492170:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG + chr3_4:15463739-15463758 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG + chr3_4:15463790-15463809 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG + chr3_4:15463825-15463844 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG + chr3_4:15463870-15463889 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG + chr3_4:15463883-15463902 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG + chr3_4:15463884-15463903 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG - chr3_4:15464090-15464109 Msa0492170:intron 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG + chr3_4:15464151-15464170 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG + chr3_4:15464163-15464182 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG - chr3_4:15464402-15464421 Msa0492170:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG - chr3_4:15464451-15464470 Msa0492170:CDS 45.0%
GTAGATGGACATACCTCTAG+TGG - chr3_4:15464466-15464485 Msa0492170:CDS 45.0%
!! CTCTGAGGTATAACCACTAG+AGG + chr3_4:15464482-15464501 None:intergenic 45.0%
CTCTAGTGGTTATACCTCAG+AGG - chr3_4:15464480-15464499 Msa0492170:CDS 45.0%
! ACACATGTTTTGCTCCTCTG+AGG + chr3_4:15464497-15464516 None:intergenic 45.0%
AGAGGAGCAAAACATGTGTG+AGG - chr3_4:15464498-15464517 Msa0492170:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG - chr3_4:15464511-15464530 Msa0492170:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG - chr3_4:15464556-15464575 Msa0492170:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG - chr3_4:15464611-15464630 Msa0492170:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG - chr3_4:15464612-15464631 Msa0492170:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG + chr3_4:15464710-15464729 None:intergenic 45.0%
!! ATGGTGGTGGAGAAATCTTC+CGG + chr3_4:15465289-15465308 None:intergenic 45.0%
CTTGGAGCTATCCCTGATGA+TGG - chr3_4:15463725-15463744 Msa0492170:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG - chr3_4:15463732-15463751 Msa0492170:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG + chr3_4:15463740-15463759 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG - chr3_4:15463815-15463834 Msa0492170:intron 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG + chr3_4:15463882-15463901 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG + chr3_4:15464616-15464635 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG + chr3_4:15464758-15464777 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG + chr3_4:15464759-15464778 None:intergenic 50.0%
CTTGGAGCTATCCCTGATGA+TGG - chr3_4:15463725-15463744 Msa0492170:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG - chr3_4:15463732-15463751 Msa0492170:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG + chr3_4:15463740-15463759 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG - chr3_4:15463815-15463834 Msa0492170:intron 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG + chr3_4:15463882-15463901 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG + chr3_4:15464616-15464635 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG + chr3_4:15464758-15464777 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG + chr3_4:15464759-15464778 None:intergenic 50.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG - chr3_4:15463874-15463893 Msa0492170:intron 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG - chr3_4:15463875-15463894 Msa0492170:intron 55.0%
TGGTCACACTAGCCCCTTGA+TGG - chr3_4:15464743-15464762 Msa0492170:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG - chr3_4:15464748-15464767 Msa0492170:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG + chr3_4:15464760-15464779 None:intergenic 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG - chr3_4:15463874-15463893 Msa0492170:intron 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG - chr3_4:15463875-15463894 Msa0492170:intron 55.0%
TGGTCACACTAGCCCCTTGA+TGG - chr3_4:15464743-15464762 Msa0492170:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG - chr3_4:15464748-15464767 Msa0492170:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG + chr3_4:15464760-15464779 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 15463716 15465310 15463716 ID=Msa0492170;Name=Msa0492170
chr3_4 mRNA 15463716 15465310 15463716 ID=Msa0492170-mRNA-1;Parent=Msa0492170;Name=Msa0492170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|315
chr3_4 exon 15464849 15465310 15464849 ID=Msa0492170-mRNA-1:exon:4533;Parent=Msa0492170-mRNA-1
chr3_4 exon 15464393 15464647 15464393 ID=Msa0492170-mRNA-1:exon:4532;Parent=Msa0492170-mRNA-1
chr3_4 exon 15464103 15464168 15464103 ID=Msa0492170-mRNA-1:exon:4531;Parent=Msa0492170-mRNA-1
chr3_4 exon 15463938 15464003 15463938 ID=Msa0492170-mRNA-1:exon:4530;Parent=Msa0492170-mRNA-1
chr3_4 exon 15463716 15463814 15463716 ID=Msa0492170-mRNA-1:exon:4529;Parent=Msa0492170-mRNA-1
chr3_4 CDS 15464849 15465310 15464849 ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4 CDS 15464393 15464647 15464393 ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4 CDS 15464103 15464168 15464103 ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4 CDS 15463938 15464003 15463938 ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
chr3_4 CDS 15463716 15463814 15463716 ID=Msa0492170-mRNA-1:cds;Parent=Msa0492170-mRNA-1
Gene Sequence

>Msa0492170

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACCAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAAAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCTAGTGGTTATACCTCAGAGGAGCAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCATCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACCGGAAGATTTCTCCACCACCATGA

Protein sequence

>Msa0492170

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSPESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKISPPP*