Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495020 | XP_024640764.1 | 57.233 | 159 | 57 | 5 | 52 | 206 | 810 | 961 | 4.72e-39 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495020 | sp|Q6YXY2|HACL1_ORYSJ | 32.370 | 173 | 101 | 4 | 41 | 208 | 1440 | 1601 | 1.04e-20 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495020 | G7KH97 | 57.233 | 159 | 57 | 5 | 52 | 206 | 826 | 977 | 2.45e-39 | 154 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0495020 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495020 | MtrunA17_Chr3g0133461 | 45.098 | 204 | 63 | 4 | 52 | 206 | 1076 | 1279 | 8.96e-43 | 153 |
| Msa0495020 | MtrunA17_Chr5g0438991 | 55.696 | 158 | 60 | 4 | 52 | 206 | 760 | 910 | 2.22e-42 | 152 |
| Msa0495020 | MtrunA17_Chr3g0138411 | 47.449 | 196 | 62 | 4 | 52 | 206 | 947 | 1142 | 2.41e-41 | 149 |
| Msa0495020 | MtrunA17_Chr6g0456861 | 52.500 | 160 | 66 | 4 | 52 | 207 | 563 | 716 | 1.54e-39 | 144 |
| Msa0495020 | MtrunA17_Chr5g0401991 | 50.355 | 141 | 60 | 4 | 52 | 188 | 86 | 220 | 1.19e-31 | 115 |
| Msa0495020 | MtrunA17_Chr6g0456851 | 79.365 | 63 | 13 | 0 | 69 | 131 | 818 | 880 | 4.65e-27 | 108 |
| Msa0495020 | MtrunA17_Chr4g0000031 | 31.429 | 210 | 94 | 7 | 41 | 208 | 1440 | 1641 | 3.42e-20 | 88.6 |
| Msa0495020 | MtrunA17_Chr6g0456911 | 62.963 | 54 | 20 | 0 | 71 | 124 | 7 | 60 | 1.91e-16 | 71.2 |
| Msa0495020 | MtrunA17_Chr0c02g0489811 | 62.963 | 54 | 20 | 0 | 71 | 124 | 8 | 61 | 9.25e-16 | 69.7 |
| Msa0495020 | MtrunA17_Chr7g0229221 | 59.259 | 54 | 22 | 0 | 71 | 124 | 8 | 61 | 3.57e-14 | 65.5 |
| Msa0495020 | MtrunA17_Chr0c02g0489731 | 59.615 | 52 | 21 | 0 | 73 | 124 | 10 | 61 | 1.18e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495020 | AT1G79000.1 | 32.653 | 196 | 73 | 7 | 64 | 208 | 1442 | 1629 | 3.54e-20 | 89.0 |
| Msa0495020 | AT1G79000.3 | 32.653 | 196 | 73 | 7 | 64 | 208 | 1418 | 1605 | 3.82e-20 | 89.0 |
| Msa0495020 | AT1G79000.2 | 32.653 | 196 | 73 | 7 | 64 | 208 | 1442 | 1629 | 3.95e-20 | 89.0 |
| Msa0495020 | AT3G12980.1 | 30.332 | 211 | 98 | 7 | 41 | 207 | 1398 | 1603 | 1.24e-18 | 84.7 |
| Msa0495020 | AT1G16710.2 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1439 | 1609 | 1.35e-18 | 84.3 |
| Msa0495020 | AT1G16710.1 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1468 | 1638 | 1.37e-18 | 84.3 |
| Msa0495020 | AT3G12980.2 | 30.332 | 211 | 98 | 7 | 41 | 207 | 1317 | 1522 | 1.38e-18 | 84.3 |
| Msa0495020 | AT1G16710.6 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1403 | 1573 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.4 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1403 | 1573 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.5 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1403 | 1573 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.3 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1442 | 1612 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.10 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1442 | 1612 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.8 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1442 | 1612 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G16710.7 | 32.961 | 179 | 71 | 6 | 71 | 208 | 1442 | 1612 | 1.44e-18 | 84.3 |
| Msa0495020 | AT1G55970.2 | 37.634 | 93 | 56 | 1 | 41 | 131 | 1189 | 1281 | 5.23e-11 | 62.4 |
| Msa0495020 | AT1G55970.1 | 37.634 | 93 | 56 | 1 | 41 | 131 | 1203 | 1295 | 5.97e-11 | 62.0 |
Find 31 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGGTTGCATACAATTTC+AGG | 0.241704 | 3_4:+23711889 | None:intergenic |
| CTTGATTCAACTTGTGTTGA+TGG | 0.297810 | 3_4:+23710612 | None:intergenic |
| CAAACTGAAAATGATTCTTC+TGG | 0.366675 | 3_4:+23710762 | None:intergenic |
| GCAGAATAGTATTCTTTAGA+TGG | 0.395998 | 3_4:+23710696 | None:intergenic |
| TCATGCAAGAGAGAGGAAAC+TGG | 0.410600 | 3_4:-23712723 | Msa0495020:CDS |
| TGAGGAATAGTTGGCATGGC+GGG | 0.414966 | 3_4:+23710733 | None:intergenic |
| ATCTCAATGCTGCGCAACTA+AGG | 0.439497 | 3_4:-23710429 | Msa0495020:CDS |
| TTCTTGATTTGAGAACAGTA+TGG | 0.446378 | 3_4:+23710389 | None:intergenic |
| GATCATCATTGAGGAATAGT+TGG | 0.463182 | 3_4:+23710724 | None:intergenic |
| AACTGTGTTCTTACCAGCAC+CGG | 0.522248 | 3_4:+23710572 | None:intergenic |
| ATCATACTGTCGATTGTTGA+AGG | 0.528570 | 3_4:+23710838 | None:intergenic |
| ATCGAAAGTGGCACAGAAGT+CGG | 0.530001 | 3_4:-23710092 | Msa0495020:CDS |
| TTTCAAATAATGCATTCTCA+AGG | 0.532999 | 3_4:+23710810 | None:intergenic |
| TAGTATTCTTTAGATGGTAG+AGG | 0.534109 | 3_4:+23710702 | None:intergenic |
| GAAGTATATAGAATCGAAAG+TGG | 0.560400 | 3_4:-23710104 | Msa0495020:CDS |
| TTTGCATTTACTAGCATGAG+AGG | 0.560427 | 3_4:+23710361 | None:intergenic |
| AATTGAAGTGTGTGCGTCAG+CGG | 0.563409 | 3_4:+23711004 | None:intergenic |
| CATGCAAGAGAGAGGAAACT+GGG | 0.568003 | 3_4:-23712722 | Msa0495020:CDS |
| CTGTTACCTCACGAAGTGGA+TGG | 0.573439 | 3_4:+23710970 | None:intergenic |
| CATACTGTCGATTGTTGAAG+GGG | 0.576600 | 3_4:+23710840 | None:intergenic |
| TCATACTGTCGATTGTTGAA+GGG | 0.587829 | 3_4:+23710839 | None:intergenic |
| AACTAAGATTCTCCACAGAC+TGG | 0.593744 | 3_4:-23711921 | Msa0495020:CDS |
| AGGATGATACCGCCAGTCTG+TGG | 0.610785 | 3_4:+23711909 | None:intergenic |
| GAACAGTATGGACGAGAGCA+TGG | 0.616911 | 3_4:+23710401 | None:intergenic |
| AAGCGTCTCATGCAAGAGAG+AGG | 0.627755 | 3_4:-23712730 | None:intergenic |
| TCATTGAGGAATAGTTGGCA+TGG | 0.635008 | 3_4:+23710729 | None:intergenic |
| GAGGAATAGTTGGCATGGCG+GGG | 0.650073 | 3_4:+23710734 | None:intergenic |
| TAAGATTCTCCACAGACTGG+CGG | 0.664722 | 3_4:-23711918 | Msa0495020:CDS |
| TTGAGGAATAGTTGGCATGG+CGG | 0.665715 | 3_4:+23710732 | None:intergenic |
| AGGGAATGAGAAACTTGATG+AGG | 0.676669 | 3_4:-23712689 | Msa0495020:intron |
| ATGGTAGAGGATCATCATTG+AGG | 0.689444 | 3_4:+23710715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATAATCTATTAC+CGG | + | chr3_4:23711065-23711084 | None:intergenic | 10.0% |
| !!! | AATTATTTTTTTAGCTTTAT+TGG | + | chr3_4:23711184-23711203 | None:intergenic | 10.0% |
| !!! | TTTTCAAATCAGTATAAATT+TGG | + | chr3_4:23710314-23710333 | None:intergenic | 15.0% |
| !!! | TACATCTTTTAATCAATTTA+AGG | + | chr3_4:23710443-23710462 | None:intergenic | 15.0% |
| !!! | TATTTGTTGATTATTTCTTA+TGG | - | chr3_4:23710751-23710770 | Msa0495020:CDS | 15.0% |
| !! | TTTACAAATATGTCTAATAT+TGG | + | chr3_4:23711686-23711705 | None:intergenic | 15.0% |
| !! | ATATATTAATAATCTAGTAC+CGG | - | chr3_4:23711734-23711753 | Msa0495020:intron | 15.0% |
| !! | AGAAATGTTTAAGTAGAAAT+TGG | + | chr3_4:23710585-23710604 | None:intergenic | 20.0% |
| !!! | TGATTTAATTTTCACTTCAA+AGG | - | chr3_4:23710972-23710991 | Msa0495020:intron | 20.0% |
| !! | TTATTATATCAACCGATATT+AGG | + | chr3_4:23711148-23711167 | None:intergenic | 20.0% |
| !! | GAATAATTAACTTTCATCAT+TGG | + | chr3_4:23711398-23711417 | None:intergenic | 20.0% |
| !! | AGAGTTAACTATTCAATAAA+AGG | + | chr3_4:23711423-23711442 | None:intergenic | 20.0% |
| !! | TTCTTATATAATGTGTATTC+TGG | - | chr3_4:23711521-23711540 | Msa0495020:intron | 20.0% |
| !!! | TGACGTGTAATTTTATAATT+TGG | - | chr3_4:23711544-23711563 | Msa0495020:intron | 20.0% |
| !! | AAGTAAAAAACAATCTATTC+CGG | + | chr3_4:23711756-23711775 | None:intergenic | 20.0% |
| !! | AATCATATGAACTTAACTTT+AGG | + | chr3_4:23711871-23711890 | None:intergenic | 20.0% |
| ! | GAAGTTTATTTAAATGCATG+CGG | + | chr3_4:23710157-23710176 | None:intergenic | 25.0% |
| ! | CATAAGAATAAGAAAAAGAC+AGG | + | chr3_4:23710245-23710264 | None:intergenic | 25.0% |
| ! | TTCTTGATTCTTTACTTATG+TGG | - | chr3_4:23710334-23710353 | Msa0495020:intron | 25.0% |
| ! | TAGGATTATTAGCAGTAAAA+TGG | - | chr3_4:23710480-23710499 | Msa0495020:intron | 25.0% |
| !! | TTTTTCTTCTTGTTGAACAA+CGG | + | chr3_4:23710940-23710959 | None:intergenic | 25.0% |
| ! | AAGTCAATAAAAATCTACTC+CGG | - | chr3_4:23711043-23711062 | Msa0495020:intron | 25.0% |
| ! | TTTACGAATATGCCTAATAT+CGG | - | chr3_4:23711133-23711152 | Msa0495020:intron | 25.0% |
| ! | ATTACAAAATTACACGTCAT+CGG | - | chr3_4:23711275-23711294 | Msa0495020:intron | 25.0% |
| ! | TAATTAACTTTCATCATTGG+TGG | + | chr3_4:23711395-23711414 | None:intergenic | 25.0% |
| ! | ACACACTTCAATTAAAAATG+AGG | - | chr3_4:23711815-23711834 | Msa0495020:intron | 25.0% |
| ! | TTTCAAATAATGCATTCTCA+AGG | + | chr3_4:23712002-23712021 | None:intergenic | 25.0% |
| !! | TCACATAATTTTCAAACTGT+TGG | + | chr3_4:23712138-23712157 | None:intergenic | 25.0% |
| ! | TAATTGTTGTCCAGAATATA+AGG | - | chr3_4:23712158-23712177 | Msa0495020:intron | 25.0% |
| !!! | TTTTCATTAACTGTTTGCTA+CGG | - | chr3_4:23712278-23712297 | Msa0495020:intron | 25.0% |
| !!! | TTTATTTATGTCGATTTTGC+AGG | - | chr3_4:23712674-23712693 | Msa0495020:intron | 25.0% |
| !!! | TTATTTATGTCGATTTTGCA+GGG | - | chr3_4:23712675-23712694 | Msa0495020:intron | 25.0% |
| TTGAATTGCTGCAAAATTGT+AGG | - | chr3_4:23710358-23710377 | Msa0495020:CDS | 30.0% | |
| AAAAGATGTATCATGCTGAA+TGG | - | chr3_4:23710453-23710472 | Msa0495020:CDS | 30.0% | |
| ATTAGCAGTAAAATGGTCTA+TGG | - | chr3_4:23710487-23710506 | Msa0495020:intron | 30.0% | |
| ! | TTTTCCCTCTTTGTAGTTTA+TGG | - | chr3_4:23710693-23710712 | Msa0495020:CDS | 30.0% |
| GAATAGTTAACTCTCTTCAT+CGG | - | chr3_4:23711429-23711448 | Msa0495020:intron | 30.0% | |
| CAATCACAAAGACTTGAAAA+CGG | + | chr3_4:23711945-23711964 | None:intergenic | 30.0% | |
| CAAACTGAAAATGATTCTTC+TGG | + | chr3_4:23712050-23712069 | None:intergenic | 30.0% | |
| TAGTATTCTTTAGATGGTAG+AGG | + | chr3_4:23712110-23712129 | None:intergenic | 30.0% | |
| GCAGAATAGTATTCTTTAGA+TGG | + | chr3_4:23712116-23712135 | None:intergenic | 30.0% | |
| AGACGAGTTAAATCAAAAAC+CGG | - | chr3_4:23712218-23712237 | Msa0495020:intron | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTA+TGG | + | chr3_4:23712423-23712442 | None:intergenic | 30.0% |
| AATGCAAAATTCGAGTGAAT+TGG | - | chr3_4:23712463-23712482 | Msa0495020:intron | 30.0% | |
| ATGCAAAATTCGAGTGAATT+GGG | - | chr3_4:23712464-23712483 | Msa0495020:intron | 30.0% | |
| AAAATGTGAATTGCATACCA+CGG | - | chr3_4:23712543-23712562 | Msa0495020:intron | 30.0% | |
| !!! | ACAGCAGAGTCATTTTTTTT+TGG | - | chr3_4:23712622-23712641 | Msa0495020:intron | 30.0% |
| GAAGTATATAGAATCGAAAG+TGG | - | chr3_4:23712705-23712724 | Msa0495020:CDS | 30.0% | |
| GAAACTGGGAAAAAGTTGAA+GGG | - | chr3_4:23710101-23710120 | Msa0495020:CDS | 35.0% | |
| TGTGAACAGCAATCAGAAAT+TGG | + | chr3_4:23710615-23710634 | None:intergenic | 35.0% | |
| ! | TTTCTGATTGCTGTTCACAT+TGG | - | chr3_4:23710616-23710635 | Msa0495020:CDS | 35.0% |
| TGTGCCATAAACTACAAAGA+GGG | + | chr3_4:23710700-23710719 | None:intergenic | 35.0% | |
| ATGTGCCATAAACTACAAAG+AGG | + | chr3_4:23710701-23710720 | None:intergenic | 35.0% | |
| CAATGCTTAGACACAATTCA+AGG | + | chr3_4:23711004-23711023 | None:intergenic | 35.0% | |
| CAAAATGAGAAATGAGAGAG+AGG | + | chr3_4:23711352-23711371 | None:intergenic | 35.0% | |
| ! | CTCTCTCTCATTTCTCATTT+TGG | - | chr3_4:23711350-23711369 | Msa0495020:intron | 35.0% |
| ! | TGTCTTAACCTCTCTCATTT+TGG | + | chr3_4:23711477-23711496 | None:intergenic | 35.0% |
| ! | TCATACTGTCGATTGTTGAA+GGG | + | chr3_4:23711973-23711992 | None:intergenic | 35.0% |
| ! | ATCATACTGTCGATTGTTGA+AGG | + | chr3_4:23711974-23711993 | None:intergenic | 35.0% |
| GATCATCATTGAGGAATAGT+TGG | + | chr3_4:23712088-23712107 | None:intergenic | 35.0% | |
| GTATCTCTCTCCTTATATTC+TGG | + | chr3_4:23712171-23712190 | None:intergenic | 35.0% | |
| CTTGATTCAACTTGTGTTGA+TGG | + | chr3_4:23712200-23712219 | None:intergenic | 35.0% | |
| TTATATTCCCTACACACAGA+TGG | - | chr3_4:23712330-23712349 | Msa0495020:intron | 35.0% | |
| TTTGCATTTACTAGCATGAG+AGG | + | chr3_4:23712451-23712470 | None:intergenic | 35.0% | |
| TGCAAAATTCGAGTGAATTG+GGG | - | chr3_4:23712465-23712484 | Msa0495020:intron | 35.0% | |
| !!! | GTTAGTATCTTTTTCAGTGC+TGG | + | chr3_4:23712496-23712515 | None:intergenic | 35.0% |
| !!! | GCATGTGTCATTTTGTTCAT+TGG | - | chr3_4:23712567-23712586 | Msa0495020:intron | 35.0% |
| GGAAACTGGGAAAAAGTTGA+AGG | - | chr3_4:23710100-23710119 | Msa0495020:CDS | 40.0% | |
| AGGGAATGAGAAACTTGATG+AGG | - | chr3_4:23710120-23710139 | Msa0495020:intron | 40.0% | |
| TATCATGCTGAATGGCTCAT+AGG | - | chr3_4:23710461-23710480 | Msa0495020:CDS | 40.0% | |
| TGGCACATCAAGAACATTGT+TGG | - | chr3_4:23710713-23710732 | Msa0495020:CDS | 40.0% | |
| ! | AAGCGAGAAAATGCTTGCTA+AGG | - | chr3_4:23710800-23710819 | Msa0495020:CDS | 40.0% |
| ! | AGCGAGAAAATGCTTGCTAA+GGG | - | chr3_4:23710801-23710820 | Msa0495020:CDS | 40.0% |
| AACTAAGATTCTCCACAGAC+TGG | - | chr3_4:23710888-23710907 | Msa0495020:intron | 40.0% | |
| CAACGGTTGCATACAATTTC+AGG | + | chr3_4:23710923-23710942 | None:intergenic | 40.0% | |
| GACACATATAGAGATAGAGG+TGG | + | chr3_4:23711325-23711344 | None:intergenic | 40.0% | |
| GGAGACACATATAGAGATAG+AGG | + | chr3_4:23711328-23711347 | None:intergenic | 40.0% | |
| AATGAGAAATGAGAGAGAGG+TGG | + | chr3_4:23711349-23711368 | None:intergenic | 40.0% | |
| TAGTTAACTCTCTTCATCGG+TGG | - | chr3_4:23711432-23711451 | Msa0495020:intron | 40.0% | |
| CACAAGAACCAAAATGAGAG+AGG | - | chr3_4:23711466-23711485 | Msa0495020:intron | 40.0% | |
| ! | CATACTGTCGATTGTTGAAG+GGG | + | chr3_4:23711972-23711991 | None:intergenic | 40.0% |
| TCATTGAGGAATAGTTGGCA+TGG | + | chr3_4:23712083-23712102 | None:intergenic | 40.0% | |
| ATGGTAGAGGATCATCATTG+AGG | + | chr3_4:23712097-23712116 | None:intergenic | 40.0% | |
| GTTAAATCAAAAACCGGTGC+TGG | - | chr3_4:23712224-23712243 | Msa0495020:intron | 40.0% | |
| GCAAAATTCGAGTGAATTGG+GGG | - | chr3_4:23712466-23712485 | Msa0495020:intron | 40.0% | |
| CAAAATTCGAGTGAATTGGG+GGG | - | chr3_4:23712467-23712486 | Msa0495020:intron | 40.0% | |
| AGATACTAACTGCTCACTCT+AGG | - | chr3_4:23712506-23712525 | Msa0495020:intron | 40.0% | |
| CTTGCTAAGGGTTGTCATCT+TGG | - | chr3_4:23710813-23710832 | Msa0495020:CDS | 45.0% | |
| TAAGATTCTCCACAGACTGG+CGG | - | chr3_4:23710891-23710910 | Msa0495020:intron | 45.0% | |
| ! | TTTCATCATTGGTGGACGCA+TGG | + | chr3_4:23711387-23711406 | None:intergenic | 45.0% |
| AATTGAAGTGTGTGCGTCAG+CGG | + | chr3_4:23711808-23711827 | None:intergenic | 45.0% | |
| TAGACTGTTACCTCACGAAG+TGG | + | chr3_4:23711846-23711865 | None:intergenic | 45.0% | |
| TTGAGGAATAGTTGGCATGG+CGG | + | chr3_4:23712080-23712099 | None:intergenic | 45.0% | |
| AACTGTGTTCTTACCAGCAC+CGG | + | chr3_4:23712240-23712259 | None:intergenic | 45.0% | |
| CAGTTCACCATCTGTGTGTA+GGG | + | chr3_4:23712340-23712359 | None:intergenic | 45.0% | |
| ATCTCAATGCTGCGCAACTA+AGG | - | chr3_4:23712380-23712399 | Msa0495020:intron | 45.0% | |
| ACAAAATGACACATGCACCG+TGG | + | chr3_4:23712563-23712582 | None:intergenic | 45.0% | |
| ATCGAAAGTGGCACAGAAGT+CGG | - | chr3_4:23712717-23712736 | Msa0495020:CDS | 45.0% | |
| !! | TTAATAAATTATTCAATAAA+AGG | + | chr3_4:23711586-23711605 | None:intergenic | 5.0% |
| !! | TTAATAAATTATTCAATAAA+AGG | - | chr3_4:23711586-23711605 | Msa0495020:intron | 5.0% |
| !! | TAATAAATTATTCAATAAAA+GGG | - | chr3_4:23711587-23711606 | Msa0495020:intron | 5.0% |
| CTGTTACCTCACGAAGTGGA+TGG | + | chr3_4:23711842-23711861 | None:intergenic | 50.0% | |
| TGAGGAATAGTTGGCATGGC+GGG | + | chr3_4:23712079-23712098 | None:intergenic | 50.0% | |
| GCAGTTCACCATCTGTGTGT+AGG | + | chr3_4:23712341-23712360 | None:intergenic | 50.0% | |
| GAACAGTATGGACGAGAGCA+TGG | + | chr3_4:23712411-23712430 | None:intergenic | 50.0% | |
| AGGATGATACCGCCAGTCTG+TGG | + | chr3_4:23710903-23710922 | None:intergenic | 55.0% | |
| TCTCTTCATCGGTGGACGCA+TGG | - | chr3_4:23711440-23711459 | Msa0495020:intron | 55.0% | |
| TGAGGTCCATCCACTTCGTG+AGG | - | chr3_4:23711833-23711852 | Msa0495020:intron | 55.0% | |
| GAGGAATAGTTGGCATGGCG+GGG | + | chr3_4:23712078-23712097 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 23710088 | 23712743 | 23710088 | ID=Msa0495020;Name=Msa0495020 |
| chr3_4 | mRNA | 23710088 | 23712743 | 23710088 | ID=Msa0495020-mRNA-1;Parent=Msa0495020;Name=Msa0495020-mRNA-1;_AED=0.44;_eAED=0.51;_QI=0|0|0|0.85|0|0|7|0|221 |
| chr3_4 | exon | 23712690 | 23712743 | 23712690 | ID=Msa0495020-mRNA-1:exon:5843;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23711871 | 23711968 | 23711871 | ID=Msa0495020-mRNA-1:exon:5842;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23710982 | 23711034 | 23710982 | ID=Msa0495020-mRNA-1:exon:5841;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23710691 | 23710878 | 23710691 | ID=Msa0495020-mRNA-1:exon:5840;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23710555 | 23710651 | 23710555 | ID=Msa0495020-mRNA-1:exon:5839;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23710355 | 23710482 | 23710355 | ID=Msa0495020-mRNA-1:exon:5838;Parent=Msa0495020-mRNA-1 |
| chr3_4 | exon | 23710088 | 23710135 | 23710088 | ID=Msa0495020-mRNA-1:exon:5837;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23712690 | 23712743 | 23712690 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23711871 | 23711968 | 23711871 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23710982 | 23711034 | 23710982 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23710691 | 23710878 | 23710691 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23710555 | 23710651 | 23710555 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23710355 | 23710482 | 23710355 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| chr3_4 | CDS | 23710088 | 23710135 | 23710088 | ID=Msa0495020-mRNA-1:cds;Parent=Msa0495020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
