AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0495100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495100 MtrunA17_Chr5g0438991 54.255 94 8 1 33 91 365 458 5.51e-23 98.2
Msa0495100 MtrunA17_Chr5g0438991 73.077 52 14 0 104 155 863 914 3.53e-16 78.2
Msa0495100 MtrunA17_Chr3g0138411 47.423 97 15 2 33 93 546 642 1.61e-19 87.8
Msa0495100 MtrunA17_Chr3g0138411 72.000 50 14 0 106 155 1097 1146 2.47e-15 75.5
Msa0495100 MtrunA17_Chr6g0456861 51.136 88 10 1 29 83 173 260 1.89e-18 84.7
Msa0495100 MtrunA17_Chr6g0456861 60.345 58 21 1 106 161 668 725 4.02e-13 68.9
Msa0495100 MtrunA17_Chr3g0133461 64.286 56 20 0 106 161 1234 1289 1.38e-14 73.6
Msa0495100 MtrunA17_Chr5g0402011 60.870 46 13 1 13 58 6 46 3.50e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTTAATTCTGAAAT+TGG 0.183703 3_4:-23946669 None:intergenic
AATCCAATTTCAGAATTAAA+TGG 0.201140 3_4:+23946666 Msa0495100:CDS
CAACGGTTGCATACAATTTC+AGG 0.241704 3_4:-23943565 None:intergenic
TGGTGGAGGGTGGAGTTTGA+AGG 0.348966 3_4:-23946452 None:intergenic
ATGCAAAATTCGAGTGAATT+GGG 0.353491 3_4:+23945111 Msa0495100:CDS
GAATGGTTTGGTGGTGGTGG+AGG 0.366640 3_4:-23946466 None:intergenic
AATGCAAAATTCGAGTGAAT+TGG 0.367057 3_4:+23945110 Msa0495100:CDS
GAGAAGCGGCACGAGGAGAT+TGG 0.408868 3_4:-23946599 None:intergenic
TCATGCAAGAGAGAGGAAAC+TGG 0.410600 3_4:+23942731 Msa0495100:CDS
AATGGTTTGGTGGTGGTGGA+GGG 0.413169 3_4:-23946465 None:intergenic
GGTTTGGTGGTGGTGGAGGG+TGG 0.413423 3_4:-23946462 None:intergenic
GTGGAATGGTTTGGTGGTGG+TGG 0.431424 3_4:-23946469 None:intergenic
GGAGCGTGAGATTGAATTGC+TGG 0.437231 3_4:-23946516 None:intergenic
ATCTCAATGCTGCGCAACTA+AGG 0.439497 3_4:+23945027 Msa0495100:CDS
TTCTTGATTTGAGAACAGTA+TGG 0.446378 3_4:-23945067 None:intergenic
CTTCTCACACATCAAATTGA+AGG 0.450721 3_4:+23941601 Msa0495100:CDS
AGAAGCGGCACGAGGAGATT+GGG 0.465163 3_4:-23946598 None:intergenic
TTTCTTGTCTTCCTCAACAT+TGG 0.469012 3_4:-23941570 None:intergenic
CAAAATGTGAATTGCATACC+AGG 0.477372 3_4:+23945184 Msa0495100:CDS
ATCTTCGACGTGGAATGGTT+TGG 0.478460 3_4:-23946478 None:intergenic
TTGACATCTTCGACGTGGAA+TGG 0.503286 3_4:-23946483 None:intergenic
TCTTCCTCAACATTGGAAGC+AGG 0.504734 3_4:-23941563 None:intergenic
TCAACATTGGAAGCAGGAGT+TGG 0.505913 3_4:-23941557 None:intergenic
TTTGATGTGTGAGAAGAACT+TGG 0.514705 3_4:-23941594 None:intergenic
GAGGACGAGGAGAACGAGAA+TGG 0.532528 3_4:-23946557 None:intergenic
CACATCAAATTGAAGGTCCA+AGG 0.536115 3_4:+23941608 Msa0495100:CDS
AGAAGTTGTTCTCTCATGCT+AGG 0.537775 3_4:+23945086 Msa0495100:CDS
TGCAAAATTCGAGTGAATTG+GGG 0.540686 3_4:+23945112 Msa0495100:CDS
GAATTGAGATGAGGAGAAAG+AGG 0.541826 3_4:-23946576 None:intergenic
AGATGAGGAGAAAGAGGACG+AGG 0.543352 3_4:-23946570 None:intergenic
AACTCCTGCTTCCAATGTTG+AGG 0.543778 3_4:+23941559 Msa0495100:CDS
TTCGACGTGGAATGGTTTGG+TGG 0.551595 3_4:-23946475 None:intergenic
GACGTGGAATGGTTTGGTGG+TGG 0.556001 3_4:-23946472 None:intergenic
CATGCAAGAGAGAGGAAACT+GGG 0.568003 3_4:+23942732 Msa0495100:CDS
TGAATGAGGCGGTGGAGAAG+CGG 0.573961 3_4:-23946613 None:intergenic
AAGAAAGCAGATGTGGATTG+TGG 0.574149 3_4:+23942555 Msa0495100:CDS
CAAGTTTGACATCTTCGACG+TGG 0.584567 3_4:-23946488 None:intergenic
AATGCAATAAATGTGAAAGA+TGG 0.592440 3_4:+23942505 Msa0495100:CDS
CTACAACAAGAAAGCAGATG+TGG 0.594060 3_4:+23942548 Msa0495100:CDS
GCAAAATTCGAGTGAATTGG+GGG 0.594926 3_4:+23945113 Msa0495100:CDS
GAGCGTCTCATGCAAGAGAG+AGG 0.599848 3_4:+23942724 Msa0495100:CDS
ATCAGAGATGAATGAGGCGG+TGG 0.603924 3_4:-23946621 None:intergenic
TTGATGTGTGAGAAGAACTT+GGG 0.611930 3_4:-23941593 None:intergenic
GAACAGTATGGACGAGAGCA+TGG 0.616911 3_4:-23945055 None:intergenic
ATTGGAAGCAGGAGTTGGAG+TGG 0.619025 3_4:-23941552 None:intergenic
GGAGATTGGGAATTGAGATG+AGG 0.619236 3_4:-23946585 None:intergenic
ACATCAAATTGAAGGTCCAA+GGG 0.620474 3_4:+23941609 Msa0495100:CDS
GGCGGTGGAGAAGCGGCACG+AGG 0.628376 3_4:-23946606 None:intergenic
ATCTGCATCAGAGATGAATG+AGG 0.653809 3_4:-23946627 None:intergenic
TAAGATTCTCCATAGACTGG+CGG 0.668657 3_4:+23943536 Msa0495100:intron
AGGGAATGAGAAACTTGATG+AGG 0.676669 3_4:+23942765 Msa0495100:CDS
AAAATGTGAATTGCATACCA+GGG 0.693252 3_4:+23945185 Msa0495100:CDS
TGCATCAGAGATGAATGAGG+CGG 0.694610 3_4:-23946624 None:intergenic
CAAAATTCGAGTGAATTGGG+GGG 0.721582 3_4:+23945114 Msa0495100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAAAATAAAAAAA+AGG + chr3_4:23945760-23945779 Msa0495100:intron 0.0%
!! ATATATTAATAATCTATTAC+CGG - chr3_4:23943710-23943729 None:intergenic 10.0%
!!! AATTATTTTTTTAGCTTTTT+TGG - chr3_4:23943830-23943849 None:intergenic 10.0%
!! TATATATTAATAATCTAGTA+CGG + chr3_4:23944380-23944399 Msa0495100:intron 10.0%
!!! ATCTTTATTTTTTATGAATA+TGG - chr3_4:23945638-23945657 None:intergenic 10.0%
!! ATATTCATAAAAAATAAAGA+TGG + chr3_4:23945637-23945656 Msa0495100:intron 10.0%
!!! AATTTTATGTGTTGAATTTT+TGG + chr3_4:23941664-23941683 Msa0495100:intron 15.0%
!! AAAGTAAAAAACTAAAAAGT+GGG - chr3_4:23942234-23942253 None:intergenic 15.0%
!! AAAAGTAAAAAACTAAAAAG+TGG - chr3_4:23942235-23942254 None:intergenic 15.0%
!! AAAAAAGGAATAATTATGAA+GGG + chr3_4:23942379-23942398 Msa0495100:intron 15.0%
!! TAATGAATCTTAAAACTTAT+CGG - chr3_4:23942414-23942433 None:intergenic 15.0%
!!! TTTTCAAATCAGTATAAATT+TGG - chr3_4:23942959-23942978 None:intergenic 15.0%
!!! TACATCTTTTAATCAATTTA+AGG - chr3_4:23943088-23943107 None:intergenic 15.0%
!!! TATTTGTTGATTATTTCTTA+TGG + chr3_4:23943396-23943415 Msa0495100:intron 15.0%
!! TAATTATAAAAACCGATATT+AGG - chr3_4:23943794-23943813 None:intergenic 15.0%
!! TTTACAAATATGTCTAATAT+TGG - chr3_4:23944333-23944352 None:intergenic 15.0%
!! ATATATTAATAATCTAGTAC+GGG + chr3_4:23944381-23944400 Msa0495100:intron 15.0%
!! ATTAACGTAAAAACTAAAAA+GGG - chr3_4:23946110-23946129 None:intergenic 15.0%
!!! TTATGTATTTTTGTTCTCTT+TGG + chr3_4:23941689-23941708 Msa0495100:intron 20.0%
!!! TCCAATTTAAGTTTTTTCTT+GGG - chr3_4:23941902-23941921 None:intergenic 20.0%
!!! ATCCAATTTAAGTTTTTTCT+TGG - chr3_4:23941903-23941922 None:intergenic 20.0%
!! TAAAAGAATCCAATTGAAAA+AGG - chr3_4:23942015-23942034 None:intergenic 20.0%
!!! TTTTTCAATTGGATTCTTTT+AGG + chr3_4:23942014-23942033 Msa0495100:intron 20.0%
!!! ATAAAAGTATTCTAAGGATA+AGG + chr3_4:23942051-23942070 Msa0495100:intron 20.0%
!! CTAACAAAAATCTTCAAAAA+AGG + chr3_4:23942364-23942383 Msa0495100:intron 20.0%
!! CAAAAAAGGAATAATTATGA+AGG + chr3_4:23942378-23942397 Msa0495100:intron 20.0%
!!! TTCCATTTTCAATTTCTTTT+AGG - chr3_4:23942615-23942634 None:intergenic 20.0%
!! AGAAATGTTTAAGTAGAAAT+TGG - chr3_4:23943230-23943249 None:intergenic 20.0%
!!! TGATTTAATTTTCACTTCAA+AGG + chr3_4:23943617-23943636 Msa0495100:intron 20.0%
!! TTTACAAATATGCCTAATAT+CGG + chr3_4:23943779-23943798 Msa0495100:intron 20.0%
!! TTCTTATATAATGTGTATTC+CGG - chr3_4:23944168-23944187 None:intergenic 20.0%
!! GAATAATTAACTTTCATCAT+TGG - chr3_4:23944047-23944066 None:intergenic 20.0%
!! AGAGTTAACTATTCAATAAA+AGG - chr3_4:23944072-23944091 None:intergenic 20.0%
!! TTCTTATATAATGTGTATTC+TGG + chr3_4:23944168-23944187 Msa0495100:intron 20.0%
!!! TGACGTGTAATTTTATAATT+TGG + chr3_4:23944191-23944210 Msa0495100:intron 20.0%
!! AATTATTGACAAAACAAACT+AGG - chr3_4:23944294-23944313 None:intergenic 20.0%
!! AATCATATGAACTTAACTTT+AGG - chr3_4:23944518-23944537 None:intergenic 20.0%
!! TTTCAAATAATGAATTCTCA+AGG - chr3_4:23944649-23944668 None:intergenic 20.0%
!!! TTATCAAAATCAGTTTTGAT+CGG + chr3_4:23945471-23945490 Msa0495100:intron 20.0%
!!! CAAGTAACTTTTAAAGATAT+TGG + chr3_4:23945662-23945681 Msa0495100:intron 20.0%
!! AACAAATTATTCTTCTTGTT+AGG - chr3_4:23945896-23945915 None:intergenic 20.0%
!!! AACAAGAAGAATAATTTGTT+TGG + chr3_4:23945896-23945915 Msa0495100:intron 20.0%
!! ATAATACTAAACATATGTTG+AGG + chr3_4:23945937-23945956 Msa0495100:intron 20.0%
!!! TTATAATGGATTAAGTTCTT+CGG + chr3_4:23945992-23946011 Msa0495100:intron 20.0%
!! CATTAACGTAAAAACTAAAA+AGG - chr3_4:23946111-23946130 None:intergenic 20.0%
!! AAGAGGAAATTAAATTATGT+TGG - chr3_4:23946216-23946235 None:intergenic 20.0%
!! AATCCAATTTCAGAATTAAA+TGG + chr3_4:23946666-23946685 Msa0495100:CDS 20.0%
!!! TTTCCATTTAATTCTGAAAT+TGG - chr3_4:23946672-23946691 None:intergenic 20.0%
! TCAATGTACAATCACTTATT+AGG + chr3_4:23941870-23941889 Msa0495100:intron 25.0%
!!! CCAATTTAAGTTTTTTCTTG+GGG - chr3_4:23941901-23941920 None:intergenic 25.0%
! CAAAAATTGCAGGAAAAAAT+TGG - chr3_4:23941975-23941994 None:intergenic 25.0%
!!! CAATTTTTTCCTGCAATTTT+TGG + chr3_4:23941973-23941992 Msa0495100:intron 25.0%
!!! AGGATCATAAAAGTATTCTA+AGG + chr3_4:23942045-23942064 Msa0495100:intron 25.0%
!!! AGAAGATTATTTTGATTCAC+AGG + chr3_4:23942272-23942291 Msa0495100:intron 25.0%
!!! GAAGATTATTTTGATTCACA+GGG + chr3_4:23942273-23942292 Msa0495100:intron 25.0%
! AATGCAATAAATGTGAAAGA+TGG + chr3_4:23942505-23942524 Msa0495100:CDS 25.0%
! TGCCTAAAAGAAATTGAAAA+TGG + chr3_4:23942610-23942629 Msa0495100:intron 25.0%
! GAAGTTTATTTAAATGCATG+CGG - chr3_4:23942802-23942821 None:intergenic 25.0%
! CATAAGAATAAGAAAAAGAC+AGG - chr3_4:23942890-23942909 None:intergenic 25.0%
! TTCTTGATTCTTTACTTATG+TGG + chr3_4:23942979-23942998 Msa0495100:intron 25.0%
! TAGGATTATTAGCAGTAAAA+TGG + chr3_4:23943125-23943144 Msa0495100:intron 25.0%
!! TTTTTCTTCTTGTTGAACAA+CGG - chr3_4:23943585-23943604 None:intergenic 25.0%
! TAATTAACTTTCATCATTGG+TGG - chr3_4:23944044-23944063 None:intergenic 25.0%
! ACACACTTCAATTAAAAATG+AGG + chr3_4:23944462-23944481 Msa0495100:intron 25.0%
! TAGTATTCTTTAGATGATAG+AGG - chr3_4:23944757-23944776 None:intergenic 25.0%
!! TCACATAATTTTCAAACTGT+CGG - chr3_4:23944785-23944804 None:intergenic 25.0%
! TAATTGTTGTCCAGAATATA+AGG + chr3_4:23944805-23944824 Msa0495100:intron 25.0%
!!! TTTTCATTAACTGTTTGCTA+CGG + chr3_4:23944925-23944944 Msa0495100:intron 25.0%
!!! AGCAGAGTCATTTTTTTTTT+TGG + chr3_4:23945266-23945285 Msa0495100:intron 25.0%
!!! TTTATTTATGTCGATTTTGC+AGG + chr3_4:23945318-23945337 Msa0495100:intron 25.0%
!!! TTATTTATGTCGATTTTGCA+GGG + chr3_4:23945319-23945338 Msa0495100:intron 25.0%
! TCATGAATACAACATCAATA+TGG - chr3_4:23945587-23945606 None:intergenic 25.0%
!!! GTAACTTTTAAAGATATTGG+TGG + chr3_4:23945665-23945684 Msa0495100:intron 25.0%
!!! TATAATGGATTAAGTTCTTC+GGG + chr3_4:23945993-23946012 Msa0495100:intron 25.0%
! CATAAATGACATATTTCCAA+GGG - chr3_4:23946278-23946297 None:intergenic 25.0%
! TCATAAATGACATATTTCCA+AGG - chr3_4:23946279-23946298 None:intergenic 25.0%
!! TTGGAAATATGTCATTTATG+AGG + chr3_4:23946278-23946297 Msa0495100:intron 25.0%
! TCAAGAGTTACTTTGATTAG+AGG - chr3_4:23941735-23941754 None:intergenic 30.0%
AGTGTGAGAATATAAGTCTA+GGG + chr3_4:23941804-23941823 Msa0495100:intron 30.0%
CCCCAAGAAAAAACTTAAAT+TGG + chr3_4:23941898-23941917 Msa0495100:intron 30.0%
! GATTCTTTTAGGCTACAATT+AGG + chr3_4:23942025-23942044 Msa0495100:intron 30.0%
!! AACATTTGTTTTCCAATGCA+AGG + chr3_4:23942077-23942096 Msa0495100:intron 30.0%
!! ACATTTGTTTTCCAATGCAA+GGG + chr3_4:23942078-23942097 Msa0495100:intron 30.0%
AAAAAACTAAAAAGTGGGAC+TGG - chr3_4:23942229-23942248 None:intergenic 30.0%
GTGAGAAAATTGCATTCAAT+CGG + chr3_4:23942331-23942350 Msa0495100:intron 30.0%
!! ATGATTGTTGTTTCTTCTAG+TGG + chr3_4:23942478-23942497 Msa0495100:intron 30.0%
!! TGATTGTTGTTTCTTCTAGT+GGG + chr3_4:23942479-23942498 Msa0495100:intron 30.0%
! ATTTCTTTTAGGCAGCATAA+AGG - chr3_4:23942604-23942623 None:intergenic 30.0%
TTGAATTGCTGCAAAATTGT+AGG + chr3_4:23943003-23943022 Msa0495100:intron 30.0%
AAAAGATGTATCATGCTGAA+TGG + chr3_4:23943098-23943117 Msa0495100:intron 30.0%
ATTAGCAGTAAAATGGTCTA+TGG + chr3_4:23943132-23943151 Msa0495100:intron 30.0%
! TTTTCCCTCTTTGTAGTTTA+TGG + chr3_4:23943338-23943357 Msa0495100:intron 30.0%
! AAGTCAATAAAAATCGACTC+CGG + chr3_4:23943688-23943707 Msa0495100:intron 30.0%
ATTACAAAATTACACGTCAC+CGG + chr3_4:23943924-23943943 Msa0495100:intron 30.0%
GAATAGTTAACTCTCTTCAT+CGG + chr3_4:23944078-23944097 Msa0495100:intron 30.0%
CAATCACAAAGACTTGAAAA+CGG - chr3_4:23944592-23944611 None:intergenic 30.0%
CAAACTGAAAATGATTCTTC+TGG - chr3_4:23944697-23944716 None:intergenic 30.0%
AGACGAGTTAAATCAAAAAC+CGG + chr3_4:23944865-23944884 Msa0495100:intron 30.0%
! TTCTTGATTTGAGAACAGTA+TGG - chr3_4:23945070-23945089 None:intergenic 30.0%
AATGCAAAATTCGAGTGAAT+TGG + chr3_4:23945110-23945129 Msa0495100:CDS 30.0%
ATGCAAAATTCGAGTGAATT+GGG + chr3_4:23945111-23945130 Msa0495100:CDS 30.0%
AAAATGTGAATTGCATACCA+GGG + chr3_4:23945185-23945204 Msa0495100:CDS 30.0%
!! TCTTAAAAGAGCATCAACAA+AGG - chr3_4:23945825-23945844 None:intergenic 30.0%
TTAGATGCAACATCTATCTT+TGG + chr3_4:23945856-23945875 Msa0495100:intron 30.0%
TAGATGCAACATCTATCTTT+GGG + chr3_4:23945857-23945876 Msa0495100:intron 30.0%
ATACTAAACATATGTTGAGG+TGG + chr3_4:23945940-23945959 Msa0495100:intron 30.0%
! TACTTGTTACTTAGCTAGTT+TGG + chr3_4:23945969-23945988 Msa0495100:intron 30.0%
! CTTAGCTAGTTTGGTTATAA+TGG + chr3_4:23945978-23945997 Msa0495100:intron 30.0%
! AACAAGTTTGCTTTAAGTGA+AGG + chr3_4:23946151-23946170 Msa0495100:intron 30.0%
GAGGAATTAGTAATTACCTT+AGG + chr3_4:23946297-23946316 Msa0495100:intron 30.0%
GCTTACAAACTGACATAAAT+GGG + chr3_4:23946385-23946404 Msa0495100:intron 30.0%
TTTCTTGTCTTCCTCAACAT+TGG - chr3_4:23941573-23941592 None:intergenic 35.0%
TTGATGTGTGAGAAGAACTT+GGG - chr3_4:23941596-23941615 None:intergenic 35.0%
TTTGATGTGTGAGAAGAACT+TGG - chr3_4:23941597-23941616 None:intergenic 35.0%
CTTCTCACACATCAAATTGA+AGG + chr3_4:23941601-23941620 Msa0495100:CDS 35.0%
ACATCAAATTGAAGGTCCAA+GGG + chr3_4:23941609-23941628 Msa0495100:CDS 35.0%
GAGTGTGAGAATATAAGTCT+AGG + chr3_4:23941803-23941822 Msa0495100:intron 35.0%
CTCACAGTTCTTTGATGTAT+TGG + chr3_4:23941935-23941954 Msa0495100:intron 35.0%
!!! TTTTCCTGCAATTTTTGGCA+TGG + chr3_4:23941978-23941997 Msa0495100:intron 35.0%
!!! CGGAGTTTACCTTTTTCAAT+TGG + chr3_4:23942003-23942022 Msa0495100:intron 35.0%
TGCGAAACAACATAAGTAGT+TGG + chr3_4:23942129-23942148 Msa0495100:intron 35.0%
AGACAATTCATGTAAGTCCA+AGG + chr3_4:23942154-23942173 Msa0495100:intron 35.0%
GCATGTTACAAGACTTCTAA+AGG + chr3_4:23942309-23942328 Msa0495100:intron 35.0%
GAAACTGGGAAAAAGTTGAA+GGG + chr3_4:23942746-23942765 Msa0495100:CDS 35.0%
TGTGAACAGCAATCAGAAAT+TGG - chr3_4:23943260-23943279 None:intergenic 35.0%
! TTTCTGATTGCTGTTCACAT+TGG + chr3_4:23943261-23943280 Msa0495100:intron 35.0%
TGTGCCATAAACTACAAAGA+GGG - chr3_4:23943345-23943364 None:intergenic 35.0%
ATGTGCCATAAACTACAAAG+AGG - chr3_4:23943346-23943365 None:intergenic 35.0%
AACTAAGATTCTCCATAGAC+TGG + chr3_4:23943533-23943552 Msa0495100:intron 35.0%
CACAAGAACCAAAATGAGAA+AGG - chr3_4:23944010-23944029 None:intergenic 35.0%
! TGTCTTAACCTCTCTCATTT+TGG - chr3_4:23944126-23944145 None:intergenic 35.0%
! TCATACTGTCGATTGTTGAA+GGG - chr3_4:23944620-23944639 None:intergenic 35.0%
! ATCATACTGTCGATTGTTGA+AGG - chr3_4:23944621-23944640 None:intergenic 35.0%
GATCATCATTGAGGAATACT+TGG - chr3_4:23944735-23944754 None:intergenic 35.0%
ATGATAGAGGATCATCATTG+AGG - chr3_4:23944744-23944763 None:intergenic 35.0%
GTATCTCTCTCCTTATATTC+TGG - chr3_4:23944818-23944837 None:intergenic 35.0%
CTTGATTCAACTTGTGTTGA+TGG - chr3_4:23944847-23944866 None:intergenic 35.0%
TTATATTCCCTACACACAGA+TGG + chr3_4:23944977-23944996 Msa0495100:intron 35.0%
TGCAAAATTCGAGTGAATTG+GGG + chr3_4:23945112-23945131 Msa0495100:CDS 35.0%
CAAAATGTGAATTGCATACC+AGG + chr3_4:23945184-23945203 Msa0495100:CDS 35.0%
GAGGTATATAGAATCGAAAG+TGG + chr3_4:23945349-23945368 Msa0495100:intron 35.0%
TCCACCTAAGTATCCAAATT+AGG + chr3_4:23945795-23945814 Msa0495100:intron 35.0%
CCACCTAAGTATCCAAATTA+GGG + chr3_4:23945796-23945815 Msa0495100:intron 35.0%
CACCTAAGTATCCAAATTAG+GGG + chr3_4:23945797-23945816 Msa0495100:intron 35.0%
ATCCCCTAATTTGGATACTT+AGG - chr3_4:23945802-23945821 None:intergenic 35.0%
!! TGCTCTTTTAAGAACCAAGT+TGG + chr3_4:23945832-23945851 Msa0495100:intron 35.0%
ATGTTGCATCTAAACCAACT+TGG - chr3_4:23945849-23945868 None:intergenic 35.0%
GAAGAAGAAATCACACTTTC+AGG + chr3_4:23946020-23946039 Msa0495100:intron 35.0%
CACTAGAAAACACAAGAAAG+AGG - chr3_4:23946233-23946252 None:intergenic 35.0%
AGAAATGGTGTGAGTAAGTT+TGG - chr3_4:23946324-23946343 None:intergenic 35.0%
GGCTTACAAACTGACATAAA+TGG + chr3_4:23946384-23946403 Msa0495100:intron 35.0%
!! TGAAGGCTTTATGGAGTTTT+GGG - chr3_4:23946438-23946457 None:intergenic 35.0%
!! TTGAAGGCTTTATGGAGTTT+TGG - chr3_4:23946439-23946458 None:intergenic 35.0%
! TCTCTGATGCAGATTTTAGA+TGG + chr3_4:23946636-23946655 Msa0495100:CDS 35.0%
CACATCAAATTGAAGGTCCA+AGG + chr3_4:23941608-23941627 Msa0495100:CDS 40.0%
!!! CTGAGTTTTTTGCTTTGCCT+TGG - chr3_4:23942174-23942193 None:intergenic 40.0%
CTACAACAAGAAAGCAGATG+TGG + chr3_4:23942548-23942567 Msa0495100:CDS 40.0%
! AAGAAAGCAGATGTGGATTG+TGG + chr3_4:23942555-23942574 Msa0495100:CDS 40.0%
AATGCATGTTCCCTCACTAA+AGG + chr3_4:23942633-23942652 Msa0495100:intron 40.0%
! CGAAGAGTCTTTTCTCTAAC+TGG - chr3_4:23942705-23942724 None:intergenic 40.0%
GGAAACTGGGAAAAAGTTGA+AGG + chr3_4:23942745-23942764 Msa0495100:CDS 40.0%
AGGGAATGAGAAACTTGATG+AGG + chr3_4:23942765-23942784 Msa0495100:CDS 40.0%
TATCATGCTGAATGGCTCAT+AGG + chr3_4:23943106-23943125 Msa0495100:intron 40.0%
TGGCACATCAAGAACATTGT+TGG + chr3_4:23943358-23943377 Msa0495100:intron 40.0%
! AAGCGAGAAAATGCTTGCTA+AGG + chr3_4:23943445-23943464 Msa0495100:intron 40.0%
! AGCGAGAAAATGCTTGCTAA+GGG + chr3_4:23943446-23943465 Msa0495100:intron 40.0%
TAAGATTCTCCATAGACTGG+CGG + chr3_4:23943536-23943555 Msa0495100:intron 40.0%
CAACGGTTGCATACAATTTC+AGG - chr3_4:23943568-23943587 None:intergenic 40.0%
CAACGCTTAGACACAATTCA+AGG - chr3_4:23943649-23943668 None:intergenic 40.0%
CAAAATGAGAAAGGAGAGAG+AGG - chr3_4:23944001-23944020 None:intergenic 40.0%
! CTCTCTCTCCTTTCTCATTT+TGG + chr3_4:23943999-23944018 Msa0495100:intron 40.0%
TAGTTAACTCTCTTCATCGG+TGG + chr3_4:23944081-23944100 Msa0495100:intron 40.0%
CACAAGAACCAAAATGAGAG+AGG + chr3_4:23944115-23944134 Msa0495100:intron 40.0%
TAGACTATTACCTCACGAAG+TGG - chr3_4:23944493-23944512 None:intergenic 40.0%
! CATACTGTCGATTGTTGAAG+GGG - chr3_4:23944619-23944638 None:intergenic 40.0%
GTTAAATCAAAAACCGGTGC+TGG + chr3_4:23944871-23944890 Msa0495100:intron 40.0%
AGAAGTTGTTCTCTCATGCT+AGG + chr3_4:23945086-23945105 Msa0495100:CDS 40.0%
GCAAAATTCGAGTGAATTGG+GGG + chr3_4:23945113-23945132 Msa0495100:CDS 40.0%
CAAAATTCGAGTGAATTGGG+GGG + chr3_4:23945114-23945133 Msa0495100:CDS 40.0%
! GTTAGTATCCTTTTCAGTGC+TGG - chr3_4:23945143-23945162 None:intergenic 40.0%
!!! GCACGTGTCATTTTGTTCAT+TGG + chr3_4:23945209-23945228 Msa0495100:intron 40.0%
CCCTAATTTGGATACTTAGG+TGG - chr3_4:23945799-23945818 None:intergenic 40.0%
CAACAAAGGATCCCCTAATT+TGG - chr3_4:23945811-23945830 None:intergenic 40.0%
GTATGAAACACAAAAGCCCT+TGG + chr3_4:23946259-23946278 Msa0495100:intron 40.0%
TGTGAGTAAGTTTGGTCCTA+AGG - chr3_4:23946316-23946335 None:intergenic 40.0%
!! AAGGCTTTATGGAGTTTTGG+GGG - chr3_4:23946436-23946455 None:intergenic 40.0%
!! GAAGGCTTTATGGAGTTTTG+GGG - chr3_4:23946437-23946456 None:intergenic 40.0%
! GCTCCACAAAAAGTACATCA+TGG + chr3_4:23946534-23946553 Msa0495100:CDS 40.0%
!! TGGCCATGATGTACTTTTTG+TGG - chr3_4:23946540-23946559 None:intergenic 40.0%
GAATTGAGATGAGGAGAAAG+AGG - chr3_4:23946579-23946598 None:intergenic 40.0%
ATCTGCATCAGAGATGAATG+AGG - chr3_4:23946630-23946649 None:intergenic 40.0%
TCAACATTGGAAGCAGGAGT+TGG - chr3_4:23941560-23941579 None:intergenic 45.0%
AACTCCTGCTTCCAATGTTG+AGG + chr3_4:23941559-23941578 Msa0495100:CDS 45.0%
TCTTCCTCAACATTGGAAGC+AGG - chr3_4:23941566-23941585 None:intergenic 45.0%
GAGAAAAACGAACTTGCCCT+TGG - chr3_4:23941628-23941647 None:intergenic 45.0%
!!! CTGCAATTTTTGGCATGGAG+CGG + chr3_4:23941983-23942002 Msa0495100:intron 45.0%
AAGTGAGCAGCCTTTAGTGA+GGG - chr3_4:23942646-23942665 None:intergenic 45.0%
AAAGTGAGCAGCCTTTAGTG+AGG - chr3_4:23942647-23942666 None:intergenic 45.0%
TCACTAAAGGCTGCTCACTT+TGG + chr3_4:23942646-23942665 Msa0495100:intron 45.0%
TCATGCAAGAGAGAGGAAAC+TGG + chr3_4:23942731-23942750 Msa0495100:CDS 45.0%
CATGCAAGAGAGAGGAAACT+GGG + chr3_4:23942732-23942751 Msa0495100:CDS 45.0%
CTTGCTAAGGGTTGTCATCT+TGG + chr3_4:23943458-23943477 Msa0495100:intron 45.0%
GACACATATAGAGAGAGAGG+TGG - chr3_4:23943974-23943993 None:intergenic 45.0%
GGAGACACATATAGAGAGAG+AGG - chr3_4:23943977-23943996 None:intergenic 45.0%
AATGAGAAAGGAGAGAGAGG+TGG - chr3_4:23943998-23944017 None:intergenic 45.0%
! TTTCATCATTGGTGGACGCA+TGG - chr3_4:23944036-23944055 None:intergenic 45.0%
AATTGAAGTGTGTGCGTCAG+CGG - chr3_4:23944455-23944474 None:intergenic 45.0%
CTATTACCTCACGAAGTGGA+TGG - chr3_4:23944489-23944508 None:intergenic 45.0%
TCATTGAGGAATACTTGGCG+TGG - chr3_4:23944730-23944749 None:intergenic 45.0%
AACTGTGTTCTTACCAGCAC+CGG - chr3_4:23944887-23944906 None:intergenic 45.0%
CAGTTCACCATCTGTGTGTA+GGG - chr3_4:23944987-23945006 None:intergenic 45.0%
ATCTCAATGCTGCGCAACTA+AGG + chr3_4:23945027-23945046 Msa0495100:CDS 45.0%
! GATTTTGCAGGGATCTGAAG+AGG + chr3_4:23945330-23945349 Msa0495100:intron 45.0%
ATCGAAAGTGGCACAGAAGT+CGG + chr3_4:23945361-23945380 Msa0495100:intron 45.0%
GTGATTGGGGTAGAGAGAAA+TGG - chr3_4:23946339-23946358 None:intergenic 45.0%
!! TGAATGACTCGGTCGTGATT+GGG - chr3_4:23946353-23946372 None:intergenic 45.0%
TGTCAGTTTGTAAGCCACGA+CGG - chr3_4:23946380-23946399 None:intergenic 45.0%
! ATGAGGTTGGTTGTCATAGG+AGG - chr3_4:23946413-23946432 None:intergenic 45.0%
!!! TTATGGAGTTTTGGGGGATG+AGG - chr3_4:23946430-23946449 None:intergenic 45.0%
GGTGGAGTTTGAAGGCTTTA+TGG - chr3_4:23946447-23946466 None:intergenic 45.0%
ATCTTCGACGTGGAATGGTT+TGG - chr3_4:23946481-23946500 None:intergenic 45.0%
TTGACATCTTCGACGTGGAA+TGG - chr3_4:23946486-23946505 None:intergenic 45.0%
CAAGTTTGACATCTTCGACG+TGG - chr3_4:23946491-23946510 None:intergenic 45.0%
GGAGATTGGGAATTGAGATG+AGG - chr3_4:23946588-23946607 None:intergenic 45.0%
TGCATCAGAGATGAATGAGG+CGG - chr3_4:23946627-23946646 None:intergenic 45.0%
!! TTAATAAATTATTCAATAAA+AGG + chr3_4:23944233-23944252 Msa0495100:intron 5.0%
!! TAATAAATTATTCAATAAAA+GGG + chr3_4:23944234-23944253 Msa0495100:intron 5.0%
ATTGGAAGCAGGAGTTGGAG+TGG - chr3_4:23941555-23941574 None:intergenic 50.0%
CGCTCCATGCCAAAAATTGC+AGG - chr3_4:23941985-23942004 None:intergenic 50.0%
! TTTCCAATGCAAGGGTGCAG+CGG + chr3_4:23942086-23942105 Msa0495100:intron 50.0%
AGGATGATACCGCCAGTCTA+TGG - chr3_4:23943548-23943567 None:intergenic 50.0%
TTGAGGAATACTTGGCGTGG+CGG - chr3_4:23944727-23944746 None:intergenic 50.0%
GCAGTTCACCATCTGTGTGT+AGG - chr3_4:23944988-23945007 None:intergenic 50.0%
GAACAGTATGGACGAGAGCA+TGG - chr3_4:23945058-23945077 None:intergenic 50.0%
ACAAAATGACACGTGCACCC+TGG - chr3_4:23945205-23945224 None:intergenic 50.0%
CACACTTTCAGGAGACAGCT+AGG + chr3_4:23946031-23946050 Msa0495100:intron 50.0%
!! GAATGACTCGGTCGTGATTG+GGG - chr3_4:23946352-23946371 None:intergenic 50.0%
!! GTGAATGACTCGGTCGTGAT+TGG - chr3_4:23946354-23946373 None:intergenic 50.0%
ACGACGGAGAGTGAATGACT+CGG - chr3_4:23946364-23946383 None:intergenic 50.0%
! GGGATGAGGTTGGTTGTCAT+AGG - chr3_4:23946416-23946435 None:intergenic 50.0%
!! AATGGTTTGGTGGTGGTGGA+GGG - chr3_4:23946468-23946487 None:intergenic 50.0%
! TTCGACGTGGAATGGTTTGG+TGG - chr3_4:23946478-23946497 None:intergenic 50.0%
GGAGCGTGAGATTGAATTGC+TGG - chr3_4:23946519-23946538 None:intergenic 50.0%
AGATGAGGAGAAAGAGGACG+AGG - chr3_4:23946573-23946592 None:intergenic 50.0%
ATCAGAGATGAATGAGGCGG+TGG - chr3_4:23946624-23946643 None:intergenic 50.0%
GAGCGTCTCATGCAAGAGAG+AGG + chr3_4:23942724-23942743 Msa0495100:CDS 55.0%
TCTCTTCATCGGTGGACGCA+TGG + chr3_4:23944089-23944108 Msa0495100:intron 55.0%
TGAGGTCCATCCACTTCGTG+AGG + chr3_4:23944480-23944499 Msa0495100:intron 55.0%
TGAGGAATACTTGGCGTGGC+GGG - chr3_4:23944726-23944745 None:intergenic 55.0%
GAGTCATTCACTCTCCGTCG+TGG + chr3_4:23946363-23946382 Msa0495100:intron 55.0%
!!! GGAGTTTTGGGGGATGAGGT+TGG - chr3_4:23946426-23946445 None:intergenic 55.0%
TGGTGGAGGGTGGAGTTTGA+AGG - chr3_4:23946455-23946474 None:intergenic 55.0%
!! GAATGGTTTGGTGGTGGTGG+AGG - chr3_4:23946469-23946488 None:intergenic 55.0%
!! GTGGAATGGTTTGGTGGTGG+TGG - chr3_4:23946472-23946491 None:intergenic 55.0%
!! GACGTGGAATGGTTTGGTGG+TGG - chr3_4:23946475-23946494 None:intergenic 55.0%
GAGGACGAGGAGAACGAGAA+TGG - chr3_4:23946560-23946579 None:intergenic 55.0%
AGAAGCGGCACGAGGAGATT+GGG - chr3_4:23946601-23946620 None:intergenic 55.0%
TGAATGAGGCGGTGGAGAAG+CGG - chr3_4:23946616-23946635 None:intergenic 55.0%
CTTCCGCTGCACCCTTGCAT+TGG - chr3_4:23942092-23942111 None:intergenic 60.0%
GAGGAATACTTGGCGTGGCG+GGG - chr3_4:23944725-23944744 None:intergenic 60.0%
GAGAAGCGGCACGAGGAGAT+TGG - chr3_4:23946602-23946621 None:intergenic 60.0%
! GCAAGGGTGCAGCGGAAGAG+TGG + chr3_4:23942094-23942113 Msa0495100:intron 65.0%
! GGGGGCTGCCAGCACTGAAA+AGG + chr3_4:23945132-23945151 Msa0495100:CDS 65.0%
!! GGTTTGGTGGTGGTGGAGGG+TGG - chr3_4:23946465-23946484 None:intergenic 65.0%
GGCGGTGGAGAAGCGGCACG+AGG - chr3_4:23946609-23946628 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 23941539 23946701 23941539 ID=Msa0495100;Name=Msa0495100
chr3_4 mRNA 23941539 23946701 23941539 ID=Msa0495100-mRNA-1;Parent=Msa0495100;Name=Msa0495100-mRNA-1;_AED=0.43;_eAED=1.00;_QI=0|0|0|0.33|1|1|6|0|261
chr3_4 exon 23941539 23941634 23941539 ID=Msa0495100-mRNA-1:exon:5850;Parent=Msa0495100-mRNA-1
chr3_4 exon 23942498 23942583 23942498 ID=Msa0495100-mRNA-1:exon:5851;Parent=Msa0495100-mRNA-1
chr3_4 exon 23942699 23942786 23942699 ID=Msa0495100-mRNA-1:exon:5852;Parent=Msa0495100-mRNA-1
chr3_4 exon 23943551 23943605 23943551 ID=Msa0495100-mRNA-1:exon:5853;Parent=Msa0495100-mRNA-1
chr3_4 exon 23944996 23945206 23944996 ID=Msa0495100-mRNA-1:exon:5854;Parent=Msa0495100-mRNA-1
chr3_4 exon 23946452 23946701 23946452 ID=Msa0495100-mRNA-1:exon:5855;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23941539 23941634 23941539 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23942498 23942583 23942498 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23942699 23942786 23942699 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23943551 23943605 23943551 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23944996 23945206 23944996 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
chr3_4 CDS 23946452 23946701 23946452 ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1
Gene Sequence

>Msa0495100

ATGTCTTGTGATTCCACTCCAACTCCTGCTTCCAATGTTGAGGAAGACAAGAAACCCAAGTTCTTCTCACACATCAAATTGAAGGTCCAAGGGCAATGGGTTGAATGCAATAAATGTGAAAGATGGCAGCATCAAATATGTGCACTCTACAACAAGAAAGCAGATGTGGATTGTGGACTGCATGACCAGTTAGAGAAAAGACTCTTCGAGCGTCTCATGCAAGAGAGAGGAAACTGGGAAAAAGTTGAAGGGAATGAGAAACTTGATGAGACTGGCGGTATCATCCTGAAATTGTATGCAACCGTTGTTCAACAAGAAGAAAAATATGGTGAACTGCTGAACATTTTGAAGCATGCATCTCAATGCTGCGCAACTAAGGCTGAACCATGCTCTCGTCCATACTGTTCTCAAATCAAGAAGTTGTTCTCTCATGCTAGGAAATGCAAAATTCGAGTGAATTGGGGGGCTGCCAGCACTGAAAAGGATACTAACTGCTCACTAATTGCAAAGATTCAAAATGTGAATTGCATACCAGGCCTTCAAACTCCACCCTCCACCACCACCAAACCATTCCACGTCGAAGATGTCAAACTTGCAATTCCAGCAATTCAATCTCACGCTCCACAAAAAGTACATCATGGCCATTCTCGTTCTCCTCGTCCTCTTTCTCCTCATCTCAATTCCCAATCTCCTCGTGCCGCTTCTCCACCGCCTCATTCATCTCTGATGCAGATTTTAGATGGTGATCAAAATCCAATTTCAGAATTAAATGGAAAAATGTTTTGA

Protein sequence

>Msa0495100

MSCDSTPTPASNVEEDKKPKFFSHIKLKVQGQWVECNKCERWQHQICALYNKKADVDCGLHDQLEKRLFERLMQERGNWEKVEGNEKLDETGGIILKLYATVVQQEEKYGELLNILKHASQCCATKAEPCSRPYCSQIKKLFSHARKCKIRVNWGAASTEKDTNCSLIAKIQNVNCIPGLQTPPSTTTKPFHVEDVKLAIPAIQSHAPQKVHHGHSRSPRPLSPHLNSQSPRAASPPPHSSLMQILDGDQNPISELNGKMF*