Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0495100 | XP_012574890.1 | 30.952 | 210 | 98 | 5 | 33 | 199 | 717 | 922 | 1.64e-18 | 96.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0495100 | A0A1S3EGC2 | 30.952 | 210 | 98 | 5 | 33 | 199 | 717 | 922 | 7.85e-19 | 96.7 |
Gene ID | Type | Classification |
---|---|---|
Msa0495100 | TR | TAZ |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0495100 | MtrunA17_Chr5g0438991 | 54.255 | 94 | 8 | 1 | 33 | 91 | 365 | 458 | 5.51e-23 | 98.2 |
Msa0495100 | MtrunA17_Chr5g0438991 | 73.077 | 52 | 14 | 0 | 104 | 155 | 863 | 914 | 3.53e-16 | 78.2 |
Msa0495100 | MtrunA17_Chr3g0138411 | 47.423 | 97 | 15 | 2 | 33 | 93 | 546 | 642 | 1.61e-19 | 87.8 |
Msa0495100 | MtrunA17_Chr3g0138411 | 72.000 | 50 | 14 | 0 | 106 | 155 | 1097 | 1146 | 2.47e-15 | 75.5 |
Msa0495100 | MtrunA17_Chr6g0456861 | 51.136 | 88 | 10 | 1 | 29 | 83 | 173 | 260 | 1.89e-18 | 84.7 |
Msa0495100 | MtrunA17_Chr6g0456861 | 60.345 | 58 | 21 | 1 | 106 | 161 | 668 | 725 | 4.02e-13 | 68.9 |
Msa0495100 | MtrunA17_Chr3g0133461 | 64.286 | 56 | 20 | 0 | 106 | 161 | 1234 | 1289 | 1.38e-14 | 73.6 |
Msa0495100 | MtrunA17_Chr5g0402011 | 60.870 | 46 | 13 | 1 | 13 | 58 | 6 | 46 | 3.50e-14 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 54 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCATTTAATTCTGAAAT+TGG | 0.183703 | 3_4:-23946669 | None:intergenic |
AATCCAATTTCAGAATTAAA+TGG | 0.201140 | 3_4:+23946666 | Msa0495100:CDS |
CAACGGTTGCATACAATTTC+AGG | 0.241704 | 3_4:-23943565 | None:intergenic |
TGGTGGAGGGTGGAGTTTGA+AGG | 0.348966 | 3_4:-23946452 | None:intergenic |
ATGCAAAATTCGAGTGAATT+GGG | 0.353491 | 3_4:+23945111 | Msa0495100:CDS |
GAATGGTTTGGTGGTGGTGG+AGG | 0.366640 | 3_4:-23946466 | None:intergenic |
AATGCAAAATTCGAGTGAAT+TGG | 0.367057 | 3_4:+23945110 | Msa0495100:CDS |
GAGAAGCGGCACGAGGAGAT+TGG | 0.408868 | 3_4:-23946599 | None:intergenic |
TCATGCAAGAGAGAGGAAAC+TGG | 0.410600 | 3_4:+23942731 | Msa0495100:CDS |
AATGGTTTGGTGGTGGTGGA+GGG | 0.413169 | 3_4:-23946465 | None:intergenic |
GGTTTGGTGGTGGTGGAGGG+TGG | 0.413423 | 3_4:-23946462 | None:intergenic |
GTGGAATGGTTTGGTGGTGG+TGG | 0.431424 | 3_4:-23946469 | None:intergenic |
GGAGCGTGAGATTGAATTGC+TGG | 0.437231 | 3_4:-23946516 | None:intergenic |
ATCTCAATGCTGCGCAACTA+AGG | 0.439497 | 3_4:+23945027 | Msa0495100:CDS |
TTCTTGATTTGAGAACAGTA+TGG | 0.446378 | 3_4:-23945067 | None:intergenic |
CTTCTCACACATCAAATTGA+AGG | 0.450721 | 3_4:+23941601 | Msa0495100:CDS |
AGAAGCGGCACGAGGAGATT+GGG | 0.465163 | 3_4:-23946598 | None:intergenic |
TTTCTTGTCTTCCTCAACAT+TGG | 0.469012 | 3_4:-23941570 | None:intergenic |
CAAAATGTGAATTGCATACC+AGG | 0.477372 | 3_4:+23945184 | Msa0495100:CDS |
ATCTTCGACGTGGAATGGTT+TGG | 0.478460 | 3_4:-23946478 | None:intergenic |
TTGACATCTTCGACGTGGAA+TGG | 0.503286 | 3_4:-23946483 | None:intergenic |
TCTTCCTCAACATTGGAAGC+AGG | 0.504734 | 3_4:-23941563 | None:intergenic |
TCAACATTGGAAGCAGGAGT+TGG | 0.505913 | 3_4:-23941557 | None:intergenic |
TTTGATGTGTGAGAAGAACT+TGG | 0.514705 | 3_4:-23941594 | None:intergenic |
GAGGACGAGGAGAACGAGAA+TGG | 0.532528 | 3_4:-23946557 | None:intergenic |
CACATCAAATTGAAGGTCCA+AGG | 0.536115 | 3_4:+23941608 | Msa0495100:CDS |
AGAAGTTGTTCTCTCATGCT+AGG | 0.537775 | 3_4:+23945086 | Msa0495100:CDS |
TGCAAAATTCGAGTGAATTG+GGG | 0.540686 | 3_4:+23945112 | Msa0495100:CDS |
GAATTGAGATGAGGAGAAAG+AGG | 0.541826 | 3_4:-23946576 | None:intergenic |
AGATGAGGAGAAAGAGGACG+AGG | 0.543352 | 3_4:-23946570 | None:intergenic |
AACTCCTGCTTCCAATGTTG+AGG | 0.543778 | 3_4:+23941559 | Msa0495100:CDS |
TTCGACGTGGAATGGTTTGG+TGG | 0.551595 | 3_4:-23946475 | None:intergenic |
GACGTGGAATGGTTTGGTGG+TGG | 0.556001 | 3_4:-23946472 | None:intergenic |
CATGCAAGAGAGAGGAAACT+GGG | 0.568003 | 3_4:+23942732 | Msa0495100:CDS |
TGAATGAGGCGGTGGAGAAG+CGG | 0.573961 | 3_4:-23946613 | None:intergenic |
AAGAAAGCAGATGTGGATTG+TGG | 0.574149 | 3_4:+23942555 | Msa0495100:CDS |
CAAGTTTGACATCTTCGACG+TGG | 0.584567 | 3_4:-23946488 | None:intergenic |
AATGCAATAAATGTGAAAGA+TGG | 0.592440 | 3_4:+23942505 | Msa0495100:CDS |
CTACAACAAGAAAGCAGATG+TGG | 0.594060 | 3_4:+23942548 | Msa0495100:CDS |
GCAAAATTCGAGTGAATTGG+GGG | 0.594926 | 3_4:+23945113 | Msa0495100:CDS |
GAGCGTCTCATGCAAGAGAG+AGG | 0.599848 | 3_4:+23942724 | Msa0495100:CDS |
ATCAGAGATGAATGAGGCGG+TGG | 0.603924 | 3_4:-23946621 | None:intergenic |
TTGATGTGTGAGAAGAACTT+GGG | 0.611930 | 3_4:-23941593 | None:intergenic |
GAACAGTATGGACGAGAGCA+TGG | 0.616911 | 3_4:-23945055 | None:intergenic |
ATTGGAAGCAGGAGTTGGAG+TGG | 0.619025 | 3_4:-23941552 | None:intergenic |
GGAGATTGGGAATTGAGATG+AGG | 0.619236 | 3_4:-23946585 | None:intergenic |
ACATCAAATTGAAGGTCCAA+GGG | 0.620474 | 3_4:+23941609 | Msa0495100:CDS |
GGCGGTGGAGAAGCGGCACG+AGG | 0.628376 | 3_4:-23946606 | None:intergenic |
ATCTGCATCAGAGATGAATG+AGG | 0.653809 | 3_4:-23946627 | None:intergenic |
TAAGATTCTCCATAGACTGG+CGG | 0.668657 | 3_4:+23943536 | Msa0495100:intron |
AGGGAATGAGAAACTTGATG+AGG | 0.676669 | 3_4:+23942765 | Msa0495100:CDS |
AAAATGTGAATTGCATACCA+GGG | 0.693252 | 3_4:+23945185 | Msa0495100:CDS |
TGCATCAGAGATGAATGAGG+CGG | 0.694610 | 3_4:-23946624 | None:intergenic |
CAAAATTCGAGTGAATTGGG+GGG | 0.721582 | 3_4:+23945114 | Msa0495100:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTAAAAATAAAAAAA+AGG | + | chr3_4:23945760-23945779 | Msa0495100:intron | 0.0% |
!! | ATATATTAATAATCTATTAC+CGG | - | chr3_4:23943710-23943729 | None:intergenic | 10.0% |
!!! | AATTATTTTTTTAGCTTTTT+TGG | - | chr3_4:23943830-23943849 | None:intergenic | 10.0% |
!! | TATATATTAATAATCTAGTA+CGG | + | chr3_4:23944380-23944399 | Msa0495100:intron | 10.0% |
!!! | ATCTTTATTTTTTATGAATA+TGG | - | chr3_4:23945638-23945657 | None:intergenic | 10.0% |
!! | ATATTCATAAAAAATAAAGA+TGG | + | chr3_4:23945637-23945656 | Msa0495100:intron | 10.0% |
!!! | AATTTTATGTGTTGAATTTT+TGG | + | chr3_4:23941664-23941683 | Msa0495100:intron | 15.0% |
!! | AAAGTAAAAAACTAAAAAGT+GGG | - | chr3_4:23942234-23942253 | None:intergenic | 15.0% |
!! | AAAAGTAAAAAACTAAAAAG+TGG | - | chr3_4:23942235-23942254 | None:intergenic | 15.0% |
!! | AAAAAAGGAATAATTATGAA+GGG | + | chr3_4:23942379-23942398 | Msa0495100:intron | 15.0% |
!! | TAATGAATCTTAAAACTTAT+CGG | - | chr3_4:23942414-23942433 | None:intergenic | 15.0% |
!!! | TTTTCAAATCAGTATAAATT+TGG | - | chr3_4:23942959-23942978 | None:intergenic | 15.0% |
!!! | TACATCTTTTAATCAATTTA+AGG | - | chr3_4:23943088-23943107 | None:intergenic | 15.0% |
!!! | TATTTGTTGATTATTTCTTA+TGG | + | chr3_4:23943396-23943415 | Msa0495100:intron | 15.0% |
!! | TAATTATAAAAACCGATATT+AGG | - | chr3_4:23943794-23943813 | None:intergenic | 15.0% |
!! | TTTACAAATATGTCTAATAT+TGG | - | chr3_4:23944333-23944352 | None:intergenic | 15.0% |
!! | ATATATTAATAATCTAGTAC+GGG | + | chr3_4:23944381-23944400 | Msa0495100:intron | 15.0% |
!! | ATTAACGTAAAAACTAAAAA+GGG | - | chr3_4:23946110-23946129 | None:intergenic | 15.0% |
!!! | TTATGTATTTTTGTTCTCTT+TGG | + | chr3_4:23941689-23941708 | Msa0495100:intron | 20.0% |
!!! | TCCAATTTAAGTTTTTTCTT+GGG | - | chr3_4:23941902-23941921 | None:intergenic | 20.0% |
!!! | ATCCAATTTAAGTTTTTTCT+TGG | - | chr3_4:23941903-23941922 | None:intergenic | 20.0% |
!! | TAAAAGAATCCAATTGAAAA+AGG | - | chr3_4:23942015-23942034 | None:intergenic | 20.0% |
!!! | TTTTTCAATTGGATTCTTTT+AGG | + | chr3_4:23942014-23942033 | Msa0495100:intron | 20.0% |
!!! | ATAAAAGTATTCTAAGGATA+AGG | + | chr3_4:23942051-23942070 | Msa0495100:intron | 20.0% |
!! | CTAACAAAAATCTTCAAAAA+AGG | + | chr3_4:23942364-23942383 | Msa0495100:intron | 20.0% |
!! | CAAAAAAGGAATAATTATGA+AGG | + | chr3_4:23942378-23942397 | Msa0495100:intron | 20.0% |
!!! | TTCCATTTTCAATTTCTTTT+AGG | - | chr3_4:23942615-23942634 | None:intergenic | 20.0% |
!! | AGAAATGTTTAAGTAGAAAT+TGG | - | chr3_4:23943230-23943249 | None:intergenic | 20.0% |
!!! | TGATTTAATTTTCACTTCAA+AGG | + | chr3_4:23943617-23943636 | Msa0495100:intron | 20.0% |
!! | TTTACAAATATGCCTAATAT+CGG | + | chr3_4:23943779-23943798 | Msa0495100:intron | 20.0% |
!! | TTCTTATATAATGTGTATTC+CGG | - | chr3_4:23944168-23944187 | None:intergenic | 20.0% |
!! | GAATAATTAACTTTCATCAT+TGG | - | chr3_4:23944047-23944066 | None:intergenic | 20.0% |
!! | AGAGTTAACTATTCAATAAA+AGG | - | chr3_4:23944072-23944091 | None:intergenic | 20.0% |
!! | TTCTTATATAATGTGTATTC+TGG | + | chr3_4:23944168-23944187 | Msa0495100:intron | 20.0% |
!!! | TGACGTGTAATTTTATAATT+TGG | + | chr3_4:23944191-23944210 | Msa0495100:intron | 20.0% |
!! | AATTATTGACAAAACAAACT+AGG | - | chr3_4:23944294-23944313 | None:intergenic | 20.0% |
!! | AATCATATGAACTTAACTTT+AGG | - | chr3_4:23944518-23944537 | None:intergenic | 20.0% |
!! | TTTCAAATAATGAATTCTCA+AGG | - | chr3_4:23944649-23944668 | None:intergenic | 20.0% |
!!! | TTATCAAAATCAGTTTTGAT+CGG | + | chr3_4:23945471-23945490 | Msa0495100:intron | 20.0% |
!!! | CAAGTAACTTTTAAAGATAT+TGG | + | chr3_4:23945662-23945681 | Msa0495100:intron | 20.0% |
!! | AACAAATTATTCTTCTTGTT+AGG | - | chr3_4:23945896-23945915 | None:intergenic | 20.0% |
!!! | AACAAGAAGAATAATTTGTT+TGG | + | chr3_4:23945896-23945915 | Msa0495100:intron | 20.0% |
!! | ATAATACTAAACATATGTTG+AGG | + | chr3_4:23945937-23945956 | Msa0495100:intron | 20.0% |
!!! | TTATAATGGATTAAGTTCTT+CGG | + | chr3_4:23945992-23946011 | Msa0495100:intron | 20.0% |
!! | CATTAACGTAAAAACTAAAA+AGG | - | chr3_4:23946111-23946130 | None:intergenic | 20.0% |
!! | AAGAGGAAATTAAATTATGT+TGG | - | chr3_4:23946216-23946235 | None:intergenic | 20.0% |
!! | AATCCAATTTCAGAATTAAA+TGG | + | chr3_4:23946666-23946685 | Msa0495100:CDS | 20.0% |
!!! | TTTCCATTTAATTCTGAAAT+TGG | - | chr3_4:23946672-23946691 | None:intergenic | 20.0% |
! | TCAATGTACAATCACTTATT+AGG | + | chr3_4:23941870-23941889 | Msa0495100:intron | 25.0% |
!!! | CCAATTTAAGTTTTTTCTTG+GGG | - | chr3_4:23941901-23941920 | None:intergenic | 25.0% |
! | CAAAAATTGCAGGAAAAAAT+TGG | - | chr3_4:23941975-23941994 | None:intergenic | 25.0% |
!!! | CAATTTTTTCCTGCAATTTT+TGG | + | chr3_4:23941973-23941992 | Msa0495100:intron | 25.0% |
!!! | AGGATCATAAAAGTATTCTA+AGG | + | chr3_4:23942045-23942064 | Msa0495100:intron | 25.0% |
!!! | AGAAGATTATTTTGATTCAC+AGG | + | chr3_4:23942272-23942291 | Msa0495100:intron | 25.0% |
!!! | GAAGATTATTTTGATTCACA+GGG | + | chr3_4:23942273-23942292 | Msa0495100:intron | 25.0% |
! | AATGCAATAAATGTGAAAGA+TGG | + | chr3_4:23942505-23942524 | Msa0495100:CDS | 25.0% |
! | TGCCTAAAAGAAATTGAAAA+TGG | + | chr3_4:23942610-23942629 | Msa0495100:intron | 25.0% |
! | GAAGTTTATTTAAATGCATG+CGG | - | chr3_4:23942802-23942821 | None:intergenic | 25.0% |
! | CATAAGAATAAGAAAAAGAC+AGG | - | chr3_4:23942890-23942909 | None:intergenic | 25.0% |
! | TTCTTGATTCTTTACTTATG+TGG | + | chr3_4:23942979-23942998 | Msa0495100:intron | 25.0% |
! | TAGGATTATTAGCAGTAAAA+TGG | + | chr3_4:23943125-23943144 | Msa0495100:intron | 25.0% |
!! | TTTTTCTTCTTGTTGAACAA+CGG | - | chr3_4:23943585-23943604 | None:intergenic | 25.0% |
! | TAATTAACTTTCATCATTGG+TGG | - | chr3_4:23944044-23944063 | None:intergenic | 25.0% |
! | ACACACTTCAATTAAAAATG+AGG | + | chr3_4:23944462-23944481 | Msa0495100:intron | 25.0% |
! | TAGTATTCTTTAGATGATAG+AGG | - | chr3_4:23944757-23944776 | None:intergenic | 25.0% |
!! | TCACATAATTTTCAAACTGT+CGG | - | chr3_4:23944785-23944804 | None:intergenic | 25.0% |
! | TAATTGTTGTCCAGAATATA+AGG | + | chr3_4:23944805-23944824 | Msa0495100:intron | 25.0% |
!!! | TTTTCATTAACTGTTTGCTA+CGG | + | chr3_4:23944925-23944944 | Msa0495100:intron | 25.0% |
!!! | AGCAGAGTCATTTTTTTTTT+TGG | + | chr3_4:23945266-23945285 | Msa0495100:intron | 25.0% |
!!! | TTTATTTATGTCGATTTTGC+AGG | + | chr3_4:23945318-23945337 | Msa0495100:intron | 25.0% |
!!! | TTATTTATGTCGATTTTGCA+GGG | + | chr3_4:23945319-23945338 | Msa0495100:intron | 25.0% |
! | TCATGAATACAACATCAATA+TGG | - | chr3_4:23945587-23945606 | None:intergenic | 25.0% |
!!! | GTAACTTTTAAAGATATTGG+TGG | + | chr3_4:23945665-23945684 | Msa0495100:intron | 25.0% |
!!! | TATAATGGATTAAGTTCTTC+GGG | + | chr3_4:23945993-23946012 | Msa0495100:intron | 25.0% |
! | CATAAATGACATATTTCCAA+GGG | - | chr3_4:23946278-23946297 | None:intergenic | 25.0% |
! | TCATAAATGACATATTTCCA+AGG | - | chr3_4:23946279-23946298 | None:intergenic | 25.0% |
!! | TTGGAAATATGTCATTTATG+AGG | + | chr3_4:23946278-23946297 | Msa0495100:intron | 25.0% |
! | TCAAGAGTTACTTTGATTAG+AGG | - | chr3_4:23941735-23941754 | None:intergenic | 30.0% |
AGTGTGAGAATATAAGTCTA+GGG | + | chr3_4:23941804-23941823 | Msa0495100:intron | 30.0% | |
CCCCAAGAAAAAACTTAAAT+TGG | + | chr3_4:23941898-23941917 | Msa0495100:intron | 30.0% | |
! | GATTCTTTTAGGCTACAATT+AGG | + | chr3_4:23942025-23942044 | Msa0495100:intron | 30.0% |
!! | AACATTTGTTTTCCAATGCA+AGG | + | chr3_4:23942077-23942096 | Msa0495100:intron | 30.0% |
!! | ACATTTGTTTTCCAATGCAA+GGG | + | chr3_4:23942078-23942097 | Msa0495100:intron | 30.0% |
AAAAAACTAAAAAGTGGGAC+TGG | - | chr3_4:23942229-23942248 | None:intergenic | 30.0% | |
GTGAGAAAATTGCATTCAAT+CGG | + | chr3_4:23942331-23942350 | Msa0495100:intron | 30.0% | |
!! | ATGATTGTTGTTTCTTCTAG+TGG | + | chr3_4:23942478-23942497 | Msa0495100:intron | 30.0% |
!! | TGATTGTTGTTTCTTCTAGT+GGG | + | chr3_4:23942479-23942498 | Msa0495100:intron | 30.0% |
! | ATTTCTTTTAGGCAGCATAA+AGG | - | chr3_4:23942604-23942623 | None:intergenic | 30.0% |
TTGAATTGCTGCAAAATTGT+AGG | + | chr3_4:23943003-23943022 | Msa0495100:intron | 30.0% | |
AAAAGATGTATCATGCTGAA+TGG | + | chr3_4:23943098-23943117 | Msa0495100:intron | 30.0% | |
ATTAGCAGTAAAATGGTCTA+TGG | + | chr3_4:23943132-23943151 | Msa0495100:intron | 30.0% | |
! | TTTTCCCTCTTTGTAGTTTA+TGG | + | chr3_4:23943338-23943357 | Msa0495100:intron | 30.0% |
! | AAGTCAATAAAAATCGACTC+CGG | + | chr3_4:23943688-23943707 | Msa0495100:intron | 30.0% |
ATTACAAAATTACACGTCAC+CGG | + | chr3_4:23943924-23943943 | Msa0495100:intron | 30.0% | |
GAATAGTTAACTCTCTTCAT+CGG | + | chr3_4:23944078-23944097 | Msa0495100:intron | 30.0% | |
CAATCACAAAGACTTGAAAA+CGG | - | chr3_4:23944592-23944611 | None:intergenic | 30.0% | |
CAAACTGAAAATGATTCTTC+TGG | - | chr3_4:23944697-23944716 | None:intergenic | 30.0% | |
AGACGAGTTAAATCAAAAAC+CGG | + | chr3_4:23944865-23944884 | Msa0495100:intron | 30.0% | |
! | TTCTTGATTTGAGAACAGTA+TGG | - | chr3_4:23945070-23945089 | None:intergenic | 30.0% |
AATGCAAAATTCGAGTGAAT+TGG | + | chr3_4:23945110-23945129 | Msa0495100:CDS | 30.0% | |
ATGCAAAATTCGAGTGAATT+GGG | + | chr3_4:23945111-23945130 | Msa0495100:CDS | 30.0% | |
AAAATGTGAATTGCATACCA+GGG | + | chr3_4:23945185-23945204 | Msa0495100:CDS | 30.0% | |
!! | TCTTAAAAGAGCATCAACAA+AGG | - | chr3_4:23945825-23945844 | None:intergenic | 30.0% |
TTAGATGCAACATCTATCTT+TGG | + | chr3_4:23945856-23945875 | Msa0495100:intron | 30.0% | |
TAGATGCAACATCTATCTTT+GGG | + | chr3_4:23945857-23945876 | Msa0495100:intron | 30.0% | |
ATACTAAACATATGTTGAGG+TGG | + | chr3_4:23945940-23945959 | Msa0495100:intron | 30.0% | |
! | TACTTGTTACTTAGCTAGTT+TGG | + | chr3_4:23945969-23945988 | Msa0495100:intron | 30.0% |
! | CTTAGCTAGTTTGGTTATAA+TGG | + | chr3_4:23945978-23945997 | Msa0495100:intron | 30.0% |
! | AACAAGTTTGCTTTAAGTGA+AGG | + | chr3_4:23946151-23946170 | Msa0495100:intron | 30.0% |
GAGGAATTAGTAATTACCTT+AGG | + | chr3_4:23946297-23946316 | Msa0495100:intron | 30.0% | |
GCTTACAAACTGACATAAAT+GGG | + | chr3_4:23946385-23946404 | Msa0495100:intron | 30.0% | |
TTTCTTGTCTTCCTCAACAT+TGG | - | chr3_4:23941573-23941592 | None:intergenic | 35.0% | |
TTGATGTGTGAGAAGAACTT+GGG | - | chr3_4:23941596-23941615 | None:intergenic | 35.0% | |
TTTGATGTGTGAGAAGAACT+TGG | - | chr3_4:23941597-23941616 | None:intergenic | 35.0% | |
CTTCTCACACATCAAATTGA+AGG | + | chr3_4:23941601-23941620 | Msa0495100:CDS | 35.0% | |
ACATCAAATTGAAGGTCCAA+GGG | + | chr3_4:23941609-23941628 | Msa0495100:CDS | 35.0% | |
GAGTGTGAGAATATAAGTCT+AGG | + | chr3_4:23941803-23941822 | Msa0495100:intron | 35.0% | |
CTCACAGTTCTTTGATGTAT+TGG | + | chr3_4:23941935-23941954 | Msa0495100:intron | 35.0% | |
!!! | TTTTCCTGCAATTTTTGGCA+TGG | + | chr3_4:23941978-23941997 | Msa0495100:intron | 35.0% |
!!! | CGGAGTTTACCTTTTTCAAT+TGG | + | chr3_4:23942003-23942022 | Msa0495100:intron | 35.0% |
TGCGAAACAACATAAGTAGT+TGG | + | chr3_4:23942129-23942148 | Msa0495100:intron | 35.0% | |
AGACAATTCATGTAAGTCCA+AGG | + | chr3_4:23942154-23942173 | Msa0495100:intron | 35.0% | |
GCATGTTACAAGACTTCTAA+AGG | + | chr3_4:23942309-23942328 | Msa0495100:intron | 35.0% | |
GAAACTGGGAAAAAGTTGAA+GGG | + | chr3_4:23942746-23942765 | Msa0495100:CDS | 35.0% | |
TGTGAACAGCAATCAGAAAT+TGG | - | chr3_4:23943260-23943279 | None:intergenic | 35.0% | |
! | TTTCTGATTGCTGTTCACAT+TGG | + | chr3_4:23943261-23943280 | Msa0495100:intron | 35.0% |
TGTGCCATAAACTACAAAGA+GGG | - | chr3_4:23943345-23943364 | None:intergenic | 35.0% | |
ATGTGCCATAAACTACAAAG+AGG | - | chr3_4:23943346-23943365 | None:intergenic | 35.0% | |
AACTAAGATTCTCCATAGAC+TGG | + | chr3_4:23943533-23943552 | Msa0495100:intron | 35.0% | |
CACAAGAACCAAAATGAGAA+AGG | - | chr3_4:23944010-23944029 | None:intergenic | 35.0% | |
! | TGTCTTAACCTCTCTCATTT+TGG | - | chr3_4:23944126-23944145 | None:intergenic | 35.0% |
! | TCATACTGTCGATTGTTGAA+GGG | - | chr3_4:23944620-23944639 | None:intergenic | 35.0% |
! | ATCATACTGTCGATTGTTGA+AGG | - | chr3_4:23944621-23944640 | None:intergenic | 35.0% |
GATCATCATTGAGGAATACT+TGG | - | chr3_4:23944735-23944754 | None:intergenic | 35.0% | |
ATGATAGAGGATCATCATTG+AGG | - | chr3_4:23944744-23944763 | None:intergenic | 35.0% | |
GTATCTCTCTCCTTATATTC+TGG | - | chr3_4:23944818-23944837 | None:intergenic | 35.0% | |
CTTGATTCAACTTGTGTTGA+TGG | - | chr3_4:23944847-23944866 | None:intergenic | 35.0% | |
TTATATTCCCTACACACAGA+TGG | + | chr3_4:23944977-23944996 | Msa0495100:intron | 35.0% | |
TGCAAAATTCGAGTGAATTG+GGG | + | chr3_4:23945112-23945131 | Msa0495100:CDS | 35.0% | |
CAAAATGTGAATTGCATACC+AGG | + | chr3_4:23945184-23945203 | Msa0495100:CDS | 35.0% | |
GAGGTATATAGAATCGAAAG+TGG | + | chr3_4:23945349-23945368 | Msa0495100:intron | 35.0% | |
TCCACCTAAGTATCCAAATT+AGG | + | chr3_4:23945795-23945814 | Msa0495100:intron | 35.0% | |
CCACCTAAGTATCCAAATTA+GGG | + | chr3_4:23945796-23945815 | Msa0495100:intron | 35.0% | |
CACCTAAGTATCCAAATTAG+GGG | + | chr3_4:23945797-23945816 | Msa0495100:intron | 35.0% | |
ATCCCCTAATTTGGATACTT+AGG | - | chr3_4:23945802-23945821 | None:intergenic | 35.0% | |
!! | TGCTCTTTTAAGAACCAAGT+TGG | + | chr3_4:23945832-23945851 | Msa0495100:intron | 35.0% |
ATGTTGCATCTAAACCAACT+TGG | - | chr3_4:23945849-23945868 | None:intergenic | 35.0% | |
GAAGAAGAAATCACACTTTC+AGG | + | chr3_4:23946020-23946039 | Msa0495100:intron | 35.0% | |
CACTAGAAAACACAAGAAAG+AGG | - | chr3_4:23946233-23946252 | None:intergenic | 35.0% | |
AGAAATGGTGTGAGTAAGTT+TGG | - | chr3_4:23946324-23946343 | None:intergenic | 35.0% | |
GGCTTACAAACTGACATAAA+TGG | + | chr3_4:23946384-23946403 | Msa0495100:intron | 35.0% | |
!! | TGAAGGCTTTATGGAGTTTT+GGG | - | chr3_4:23946438-23946457 | None:intergenic | 35.0% |
!! | TTGAAGGCTTTATGGAGTTT+TGG | - | chr3_4:23946439-23946458 | None:intergenic | 35.0% |
! | TCTCTGATGCAGATTTTAGA+TGG | + | chr3_4:23946636-23946655 | Msa0495100:CDS | 35.0% |
CACATCAAATTGAAGGTCCA+AGG | + | chr3_4:23941608-23941627 | Msa0495100:CDS | 40.0% | |
!!! | CTGAGTTTTTTGCTTTGCCT+TGG | - | chr3_4:23942174-23942193 | None:intergenic | 40.0% |
CTACAACAAGAAAGCAGATG+TGG | + | chr3_4:23942548-23942567 | Msa0495100:CDS | 40.0% | |
! | AAGAAAGCAGATGTGGATTG+TGG | + | chr3_4:23942555-23942574 | Msa0495100:CDS | 40.0% |
AATGCATGTTCCCTCACTAA+AGG | + | chr3_4:23942633-23942652 | Msa0495100:intron | 40.0% | |
! | CGAAGAGTCTTTTCTCTAAC+TGG | - | chr3_4:23942705-23942724 | None:intergenic | 40.0% |
GGAAACTGGGAAAAAGTTGA+AGG | + | chr3_4:23942745-23942764 | Msa0495100:CDS | 40.0% | |
AGGGAATGAGAAACTTGATG+AGG | + | chr3_4:23942765-23942784 | Msa0495100:CDS | 40.0% | |
TATCATGCTGAATGGCTCAT+AGG | + | chr3_4:23943106-23943125 | Msa0495100:intron | 40.0% | |
TGGCACATCAAGAACATTGT+TGG | + | chr3_4:23943358-23943377 | Msa0495100:intron | 40.0% | |
! | AAGCGAGAAAATGCTTGCTA+AGG | + | chr3_4:23943445-23943464 | Msa0495100:intron | 40.0% |
! | AGCGAGAAAATGCTTGCTAA+GGG | + | chr3_4:23943446-23943465 | Msa0495100:intron | 40.0% |
TAAGATTCTCCATAGACTGG+CGG | + | chr3_4:23943536-23943555 | Msa0495100:intron | 40.0% | |
CAACGGTTGCATACAATTTC+AGG | - | chr3_4:23943568-23943587 | None:intergenic | 40.0% | |
CAACGCTTAGACACAATTCA+AGG | - | chr3_4:23943649-23943668 | None:intergenic | 40.0% | |
CAAAATGAGAAAGGAGAGAG+AGG | - | chr3_4:23944001-23944020 | None:intergenic | 40.0% | |
! | CTCTCTCTCCTTTCTCATTT+TGG | + | chr3_4:23943999-23944018 | Msa0495100:intron | 40.0% |
TAGTTAACTCTCTTCATCGG+TGG | + | chr3_4:23944081-23944100 | Msa0495100:intron | 40.0% | |
CACAAGAACCAAAATGAGAG+AGG | + | chr3_4:23944115-23944134 | Msa0495100:intron | 40.0% | |
TAGACTATTACCTCACGAAG+TGG | - | chr3_4:23944493-23944512 | None:intergenic | 40.0% | |
! | CATACTGTCGATTGTTGAAG+GGG | - | chr3_4:23944619-23944638 | None:intergenic | 40.0% |
GTTAAATCAAAAACCGGTGC+TGG | + | chr3_4:23944871-23944890 | Msa0495100:intron | 40.0% | |
AGAAGTTGTTCTCTCATGCT+AGG | + | chr3_4:23945086-23945105 | Msa0495100:CDS | 40.0% | |
GCAAAATTCGAGTGAATTGG+GGG | + | chr3_4:23945113-23945132 | Msa0495100:CDS | 40.0% | |
CAAAATTCGAGTGAATTGGG+GGG | + | chr3_4:23945114-23945133 | Msa0495100:CDS | 40.0% | |
! | GTTAGTATCCTTTTCAGTGC+TGG | - | chr3_4:23945143-23945162 | None:intergenic | 40.0% |
!!! | GCACGTGTCATTTTGTTCAT+TGG | + | chr3_4:23945209-23945228 | Msa0495100:intron | 40.0% |
CCCTAATTTGGATACTTAGG+TGG | - | chr3_4:23945799-23945818 | None:intergenic | 40.0% | |
CAACAAAGGATCCCCTAATT+TGG | - | chr3_4:23945811-23945830 | None:intergenic | 40.0% | |
GTATGAAACACAAAAGCCCT+TGG | + | chr3_4:23946259-23946278 | Msa0495100:intron | 40.0% | |
TGTGAGTAAGTTTGGTCCTA+AGG | - | chr3_4:23946316-23946335 | None:intergenic | 40.0% | |
!! | AAGGCTTTATGGAGTTTTGG+GGG | - | chr3_4:23946436-23946455 | None:intergenic | 40.0% |
!! | GAAGGCTTTATGGAGTTTTG+GGG | - | chr3_4:23946437-23946456 | None:intergenic | 40.0% |
! | GCTCCACAAAAAGTACATCA+TGG | + | chr3_4:23946534-23946553 | Msa0495100:CDS | 40.0% |
!! | TGGCCATGATGTACTTTTTG+TGG | - | chr3_4:23946540-23946559 | None:intergenic | 40.0% |
GAATTGAGATGAGGAGAAAG+AGG | - | chr3_4:23946579-23946598 | None:intergenic | 40.0% | |
ATCTGCATCAGAGATGAATG+AGG | - | chr3_4:23946630-23946649 | None:intergenic | 40.0% | |
TCAACATTGGAAGCAGGAGT+TGG | - | chr3_4:23941560-23941579 | None:intergenic | 45.0% | |
AACTCCTGCTTCCAATGTTG+AGG | + | chr3_4:23941559-23941578 | Msa0495100:CDS | 45.0% | |
TCTTCCTCAACATTGGAAGC+AGG | - | chr3_4:23941566-23941585 | None:intergenic | 45.0% | |
GAGAAAAACGAACTTGCCCT+TGG | - | chr3_4:23941628-23941647 | None:intergenic | 45.0% | |
!!! | CTGCAATTTTTGGCATGGAG+CGG | + | chr3_4:23941983-23942002 | Msa0495100:intron | 45.0% |
AAGTGAGCAGCCTTTAGTGA+GGG | - | chr3_4:23942646-23942665 | None:intergenic | 45.0% | |
AAAGTGAGCAGCCTTTAGTG+AGG | - | chr3_4:23942647-23942666 | None:intergenic | 45.0% | |
TCACTAAAGGCTGCTCACTT+TGG | + | chr3_4:23942646-23942665 | Msa0495100:intron | 45.0% | |
TCATGCAAGAGAGAGGAAAC+TGG | + | chr3_4:23942731-23942750 | Msa0495100:CDS | 45.0% | |
CATGCAAGAGAGAGGAAACT+GGG | + | chr3_4:23942732-23942751 | Msa0495100:CDS | 45.0% | |
CTTGCTAAGGGTTGTCATCT+TGG | + | chr3_4:23943458-23943477 | Msa0495100:intron | 45.0% | |
GACACATATAGAGAGAGAGG+TGG | - | chr3_4:23943974-23943993 | None:intergenic | 45.0% | |
GGAGACACATATAGAGAGAG+AGG | - | chr3_4:23943977-23943996 | None:intergenic | 45.0% | |
AATGAGAAAGGAGAGAGAGG+TGG | - | chr3_4:23943998-23944017 | None:intergenic | 45.0% | |
! | TTTCATCATTGGTGGACGCA+TGG | - | chr3_4:23944036-23944055 | None:intergenic | 45.0% |
AATTGAAGTGTGTGCGTCAG+CGG | - | chr3_4:23944455-23944474 | None:intergenic | 45.0% | |
CTATTACCTCACGAAGTGGA+TGG | - | chr3_4:23944489-23944508 | None:intergenic | 45.0% | |
TCATTGAGGAATACTTGGCG+TGG | - | chr3_4:23944730-23944749 | None:intergenic | 45.0% | |
AACTGTGTTCTTACCAGCAC+CGG | - | chr3_4:23944887-23944906 | None:intergenic | 45.0% | |
CAGTTCACCATCTGTGTGTA+GGG | - | chr3_4:23944987-23945006 | None:intergenic | 45.0% | |
ATCTCAATGCTGCGCAACTA+AGG | + | chr3_4:23945027-23945046 | Msa0495100:CDS | 45.0% | |
! | GATTTTGCAGGGATCTGAAG+AGG | + | chr3_4:23945330-23945349 | Msa0495100:intron | 45.0% |
ATCGAAAGTGGCACAGAAGT+CGG | + | chr3_4:23945361-23945380 | Msa0495100:intron | 45.0% | |
GTGATTGGGGTAGAGAGAAA+TGG | - | chr3_4:23946339-23946358 | None:intergenic | 45.0% | |
!! | TGAATGACTCGGTCGTGATT+GGG | - | chr3_4:23946353-23946372 | None:intergenic | 45.0% |
TGTCAGTTTGTAAGCCACGA+CGG | - | chr3_4:23946380-23946399 | None:intergenic | 45.0% | |
! | ATGAGGTTGGTTGTCATAGG+AGG | - | chr3_4:23946413-23946432 | None:intergenic | 45.0% |
!!! | TTATGGAGTTTTGGGGGATG+AGG | - | chr3_4:23946430-23946449 | None:intergenic | 45.0% |
GGTGGAGTTTGAAGGCTTTA+TGG | - | chr3_4:23946447-23946466 | None:intergenic | 45.0% | |
ATCTTCGACGTGGAATGGTT+TGG | - | chr3_4:23946481-23946500 | None:intergenic | 45.0% | |
TTGACATCTTCGACGTGGAA+TGG | - | chr3_4:23946486-23946505 | None:intergenic | 45.0% | |
CAAGTTTGACATCTTCGACG+TGG | - | chr3_4:23946491-23946510 | None:intergenic | 45.0% | |
GGAGATTGGGAATTGAGATG+AGG | - | chr3_4:23946588-23946607 | None:intergenic | 45.0% | |
TGCATCAGAGATGAATGAGG+CGG | - | chr3_4:23946627-23946646 | None:intergenic | 45.0% | |
!! | TTAATAAATTATTCAATAAA+AGG | + | chr3_4:23944233-23944252 | Msa0495100:intron | 5.0% |
!! | TAATAAATTATTCAATAAAA+GGG | + | chr3_4:23944234-23944253 | Msa0495100:intron | 5.0% |
ATTGGAAGCAGGAGTTGGAG+TGG | - | chr3_4:23941555-23941574 | None:intergenic | 50.0% | |
CGCTCCATGCCAAAAATTGC+AGG | - | chr3_4:23941985-23942004 | None:intergenic | 50.0% | |
! | TTTCCAATGCAAGGGTGCAG+CGG | + | chr3_4:23942086-23942105 | Msa0495100:intron | 50.0% |
AGGATGATACCGCCAGTCTA+TGG | - | chr3_4:23943548-23943567 | None:intergenic | 50.0% | |
TTGAGGAATACTTGGCGTGG+CGG | - | chr3_4:23944727-23944746 | None:intergenic | 50.0% | |
GCAGTTCACCATCTGTGTGT+AGG | - | chr3_4:23944988-23945007 | None:intergenic | 50.0% | |
GAACAGTATGGACGAGAGCA+TGG | - | chr3_4:23945058-23945077 | None:intergenic | 50.0% | |
ACAAAATGACACGTGCACCC+TGG | - | chr3_4:23945205-23945224 | None:intergenic | 50.0% | |
CACACTTTCAGGAGACAGCT+AGG | + | chr3_4:23946031-23946050 | Msa0495100:intron | 50.0% | |
!! | GAATGACTCGGTCGTGATTG+GGG | - | chr3_4:23946352-23946371 | None:intergenic | 50.0% |
!! | GTGAATGACTCGGTCGTGAT+TGG | - | chr3_4:23946354-23946373 | None:intergenic | 50.0% |
ACGACGGAGAGTGAATGACT+CGG | - | chr3_4:23946364-23946383 | None:intergenic | 50.0% | |
! | GGGATGAGGTTGGTTGTCAT+AGG | - | chr3_4:23946416-23946435 | None:intergenic | 50.0% |
!! | AATGGTTTGGTGGTGGTGGA+GGG | - | chr3_4:23946468-23946487 | None:intergenic | 50.0% |
! | TTCGACGTGGAATGGTTTGG+TGG | - | chr3_4:23946478-23946497 | None:intergenic | 50.0% |
GGAGCGTGAGATTGAATTGC+TGG | - | chr3_4:23946519-23946538 | None:intergenic | 50.0% | |
AGATGAGGAGAAAGAGGACG+AGG | - | chr3_4:23946573-23946592 | None:intergenic | 50.0% | |
ATCAGAGATGAATGAGGCGG+TGG | - | chr3_4:23946624-23946643 | None:intergenic | 50.0% | |
GAGCGTCTCATGCAAGAGAG+AGG | + | chr3_4:23942724-23942743 | Msa0495100:CDS | 55.0% | |
TCTCTTCATCGGTGGACGCA+TGG | + | chr3_4:23944089-23944108 | Msa0495100:intron | 55.0% | |
TGAGGTCCATCCACTTCGTG+AGG | + | chr3_4:23944480-23944499 | Msa0495100:intron | 55.0% | |
TGAGGAATACTTGGCGTGGC+GGG | - | chr3_4:23944726-23944745 | None:intergenic | 55.0% | |
GAGTCATTCACTCTCCGTCG+TGG | + | chr3_4:23946363-23946382 | Msa0495100:intron | 55.0% | |
!!! | GGAGTTTTGGGGGATGAGGT+TGG | - | chr3_4:23946426-23946445 | None:intergenic | 55.0% |
TGGTGGAGGGTGGAGTTTGA+AGG | - | chr3_4:23946455-23946474 | None:intergenic | 55.0% | |
!! | GAATGGTTTGGTGGTGGTGG+AGG | - | chr3_4:23946469-23946488 | None:intergenic | 55.0% |
!! | GTGGAATGGTTTGGTGGTGG+TGG | - | chr3_4:23946472-23946491 | None:intergenic | 55.0% |
!! | GACGTGGAATGGTTTGGTGG+TGG | - | chr3_4:23946475-23946494 | None:intergenic | 55.0% |
GAGGACGAGGAGAACGAGAA+TGG | - | chr3_4:23946560-23946579 | None:intergenic | 55.0% | |
AGAAGCGGCACGAGGAGATT+GGG | - | chr3_4:23946601-23946620 | None:intergenic | 55.0% | |
TGAATGAGGCGGTGGAGAAG+CGG | - | chr3_4:23946616-23946635 | None:intergenic | 55.0% | |
CTTCCGCTGCACCCTTGCAT+TGG | - | chr3_4:23942092-23942111 | None:intergenic | 60.0% | |
GAGGAATACTTGGCGTGGCG+GGG | - | chr3_4:23944725-23944744 | None:intergenic | 60.0% | |
GAGAAGCGGCACGAGGAGAT+TGG | - | chr3_4:23946602-23946621 | None:intergenic | 60.0% | |
! | GCAAGGGTGCAGCGGAAGAG+TGG | + | chr3_4:23942094-23942113 | Msa0495100:intron | 65.0% |
! | GGGGGCTGCCAGCACTGAAA+AGG | + | chr3_4:23945132-23945151 | Msa0495100:CDS | 65.0% |
!! | GGTTTGGTGGTGGTGGAGGG+TGG | - | chr3_4:23946465-23946484 | None:intergenic | 65.0% |
GGCGGTGGAGAAGCGGCACG+AGG | - | chr3_4:23946609-23946628 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 23941539 | 23946701 | 23941539 | ID=Msa0495100;Name=Msa0495100 |
chr3_4 | mRNA | 23941539 | 23946701 | 23941539 | ID=Msa0495100-mRNA-1;Parent=Msa0495100;Name=Msa0495100-mRNA-1;_AED=0.43;_eAED=1.00;_QI=0|0|0|0.33|1|1|6|0|261 |
chr3_4 | exon | 23941539 | 23941634 | 23941539 | ID=Msa0495100-mRNA-1:exon:5850;Parent=Msa0495100-mRNA-1 |
chr3_4 | exon | 23942498 | 23942583 | 23942498 | ID=Msa0495100-mRNA-1:exon:5851;Parent=Msa0495100-mRNA-1 |
chr3_4 | exon | 23942699 | 23942786 | 23942699 | ID=Msa0495100-mRNA-1:exon:5852;Parent=Msa0495100-mRNA-1 |
chr3_4 | exon | 23943551 | 23943605 | 23943551 | ID=Msa0495100-mRNA-1:exon:5853;Parent=Msa0495100-mRNA-1 |
chr3_4 | exon | 23944996 | 23945206 | 23944996 | ID=Msa0495100-mRNA-1:exon:5854;Parent=Msa0495100-mRNA-1 |
chr3_4 | exon | 23946452 | 23946701 | 23946452 | ID=Msa0495100-mRNA-1:exon:5855;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23941539 | 23941634 | 23941539 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23942498 | 23942583 | 23942498 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23942699 | 23942786 | 23942699 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23943551 | 23943605 | 23943551 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23944996 | 23945206 | 23944996 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
chr3_4 | CDS | 23946452 | 23946701 | 23946452 | ID=Msa0495100-mRNA-1:cds;Parent=Msa0495100-mRNA-1 |
Gene Sequence |
Protein sequence |