AlfalfaGEDB | Msa0495860

M. sativa cultivar zhongmu-4 / Msa0495860

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495860	XP_024637264.1	63.253	166	47	3	1	153	1	165	3.21e-65	206

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495860	G7JQ00	63.253	166	47	3	1	153	61	225	8.60e-65	206

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0495860	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495860	MtrunA17_Chr5g0393501	28.655	171	97	5	2	152	76	241	4.52e-11	58.9

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 31 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCGTGATGTTTCACTCTA+AGG	0.341127	3_4:-25585156	None:intergenic
ACATGAATGATATTGTCATA+AGG	0.526037	3_4:-25585196	None:intergenic
AGGAATTTGCCGAAAGTATC+AGG	0.335653	3_4:-25585136	None:intergenic
AGTCGGCCGTTGTTGACAGA+TGG	0.531450	3_4:+25584797	Msa0495860:CDS
ATCCAGATAGGAACTTCAAA+AGG	0.531873	3_4:-25584986	None:intergenic
ATCTACTTCCACCAAGGTAC+TGG	0.428620	3_4:-25584876	None:intergenic
ATGTGATGTTCGGAAAAGGT+TGG	0.606400	3_4:+25585251	Msa0495860:CDS
ATTATTGCTTTCCAGTACCT+TGG	0.461507	3_4:+25584865	Msa0495860:CDS
ATTGCTTTCCAGTACCTTGG+TGG	0.549152	3_4:+25584868	Msa0495860:CDS
CACGATTACGTCATGTTGTG+CGG	0.590860	3_4:+25585172	Msa0495860:CDS

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCAACAAATCAGTTAGT+CGG	+	chr3_4:25584780-25584799	Msa0495860:CDS	30.0%
CGATTATTCTACGAGTTTAG+TGG	+	chr3_4:25584835-25584854	Msa0495860:CDS	35.0%
ATTATTGCTTTCCAGTACCT+TGG	+	chr3_4:25584865-25584884	Msa0495860:CDS	35.0%
ATCCAGATAGGAACTTCAAA+AGG	-	chr3_4:25584989-25585008	None:intergenic	35.0%
TTGAAGTTCCTATCTGGATA+TGG	+	chr3_4:25584990-25585009	Msa0495860:CDS	35.0%
TAGGAACTACCTGATACTTT+CGG	+	chr3_4:25585127-25585146	Msa0495860:intron	35.0%
AATCGTGATGTTTCACTCTA+AGG	-	chr3_4:25585159-25585178	None:intergenic	35.0%
TCTACGAGTTTAGTGGAAGT+AGG	+	chr3_4:25584842-25584861	Msa0495860:CDS	40.0%
TGATAGGGTGGATAATCAAC+TGG	-	chr3_4:25584934-25584953	None:intergenic	40.0%
CGAACATCACATTTGGTATG+GGG	-	chr3_4:25585243-25585262	None:intergenic	40.0%

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	25584779	25585375	25584779	ID=Msa0495860;Name=Msa0495860
chr3_4	mRNA	25584779	25585375	25584779	ID=Msa0495860-mRNA-1;Parent=Msa0495860;Name=Msa0495860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0.5\|0\|1\|0.5\|0.33\|3\|0\|153
chr3_4	exon	25584779	25584933	25584779	ID=Msa0495860-mRNA-1:exon:6175;Parent=Msa0495860-mRNA-1
chr3_4	exon	25584971	25585031	25584971	ID=Msa0495860-mRNA-1:exon:6176;Parent=Msa0495860-mRNA-1
chr3_4	exon	25585130	25585375	25585130	ID=Msa0495860-mRNA-1:exon:6177;Parent=Msa0495860-mRNA-1
chr3_4	CDS	25584779	25584933	25584779	ID=Msa0495860-mRNA-1:cds;Parent=Msa0495860-mRNA-1
chr3_4	CDS	25584971	25585031	25584971	ID=Msa0495860-mRNA-1:cds;Parent=Msa0495860-mRNA-1
chr3_4	CDS	25585130	25585375	25585130	ID=Msa0495860-mRNA-1:cds;Parent=Msa0495860-mRNA-1

Gene Sequence

>Msa0495860

ATGTTCAACAAATCAGTTAGTCGGCCGTTGTTGACAGATGGTTGGAGTGCATATTGCGATTATTCTACGAGTTTAGTGGAAGTAGGATTATTGCTTTCCAGTACCTTGGTGGAAGTAGATTTCAAATCTTTGTTTTTGCTTATAACATTACTCCACATCGTGTTATTGTACCTTTTGAAGTTCCTATCTGGATATGGATCGACGAAATCACCGAAGGAACTACCTGATACTTTCGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCGGACCTTATGACAATATCATTCATGTGAGACTCAAATATACAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACAAAAAATATGTTATCGTATCCAAGCGTTGA

Protein sequence

>Msa0495860

MFNKSVSRPLLTDGWSAYCDYSTSLVEVGLLLSSTLVEVDFKSLFLLITLLHIVLLYLLKFLSGYGSTKSPKELPDTFGKFLRVKHHDYVMLCGPYDNIIHVRLKYTDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDKKYVIVSKR*