Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496290 | AES68536.1 | 84.556 | 259 | 17 | 4 | 16 | 253 | 18 | 274 | 1.31e-147 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496290 | sp|Q9LG02|HMG11_ARATH | 37.121 | 264 | 101 | 7 | 36 | 244 | 30 | 283 | 4.77e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496290 | G7J0D1 | 84.556 | 259 | 17 | 4 | 16 | 253 | 18 | 274 | 6.27e-148 | 424 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0496290 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496290 | MtrunA17_Chr3g0079841 | 84.556 | 259 | 17 | 4 | 16 | 253 | 18 | 274 | 1.21e-151 | 424 |
| Msa0496290 | MtrunA17_Chr1g0213311 | 44.041 | 193 | 80 | 4 | 29 | 193 | 24 | 216 | 1.25e-42 | 150 |
| Msa0496290 | MtrunA17_Chr3g0143581 | 51.240 | 121 | 48 | 2 | 29 | 138 | 20 | 140 | 2.36e-33 | 120 |
| Msa0496290 | MtrunA17_Chr7g0214501 | 40.541 | 111 | 41 | 2 | 83 | 193 | 3 | 88 | 1.50e-15 | 75.5 |
| Msa0496290 | MtrunA17_Chr7g0214491 | 48.438 | 64 | 24 | 1 | 26 | 80 | 22 | 85 | 5.48e-12 | 61.2 |
| Msa0496290 | MtrunA17_Chr2g0320431 | 82.500 | 40 | 6 | 1 | 155 | 193 | 216 | 255 | 1.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496290 | AT1G55650.1 | 37.121 | 264 | 101 | 7 | 36 | 244 | 30 | 283 | 4.85e-44 | 152 |
| Msa0496290 | AT3G13350.1 | 50.292 | 171 | 66 | 5 | 34 | 193 | 34 | 196 | 2.15e-42 | 148 |
| Msa0496290 | AT3G13350.1 | 51.923 | 52 | 25 | 0 | 194 | 245 | 256 | 307 | 4.32e-11 | 62.8 |
| Msa0496290 | AT1G04880.1 | 41.414 | 198 | 90 | 5 | 32 | 206 | 21 | 215 | 6.40e-37 | 136 |
| Msa0496290 | AT1G76110.1 | 40.566 | 212 | 102 | 5 | 1 | 193 | 1 | 207 | 2.88e-36 | 132 |
Find 72 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTCTATACCTGTCTTTC+TGG | 0.121212 | 3_4:+26752649 | None:intergenic |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3_4:-26752697 | Msa0496290:CDS |
| TGAGAGGTAAAGAAAGATAT+AGG | 0.259472 | 3_4:-26751394 | Msa0496290:CDS |
| CTCCTCAATGGACTCTTATA+TGG | 0.283347 | 3_4:-26751337 | Msa0496290:CDS |
| TAATTTAATGCAGGTTTATC+AGG | 0.284330 | 3_4:-26751426 | Msa0496290:intron |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3_4:-26754156 | Msa0496290:CDS |
| TTGACATGTGGTGTAAATTA+TGG | 0.291819 | 3_4:-26751221 | Msa0496290:three_prime_UTR |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3_4:-26754454 | Msa0496290:CDS |
| GAGAAAACTGATAGCTTAGA+AGG | 0.319173 | 3_4:-26751252 | Msa0496290:exon |
| GGTGCGGTTGGAGGAGGATA+AGG | 0.340377 | 3_4:+26756719 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3_4:-26752696 | Msa0496290:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3_4:-26754396 | Msa0496290:CDS |
| AAGTCTATACCTGTCTTTCT+GGG | 0.390289 | 3_4:+26752650 | None:intergenic |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3_4:+26754190 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3_4:+26754143 | None:intergenic |
| GAGAGGTAAAGAAAGATATA+GGG | 0.423260 | 3_4:-26751393 | Msa0496290:CDS |
| TGCAGGTTTATCAGGAGAAA+AGG | 0.428315 | 3_4:-26751418 | Msa0496290:intron |
| GTGCGGTTGGAGGAGGATAA+GGG | 0.433456 | 3_4:+26756720 | None:intergenic |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3_4:+26754364 | None:intergenic |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3_4:+26754397 | None:intergenic |
| ATCAAAGAACAAAAGGTTTG+AGG | 0.461275 | 3_4:+26751311 | None:intergenic |
| TCCTTGTGGCCTGCAAAATG+AGG | 0.463327 | 3_4:+26752717 | None:intergenic |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3_4:-26752955 | Msa0496290:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3_4:-26752929 | Msa0496290:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3_4:+26754175 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3_4:-26754644 | Msa0496290:intron |
| TCAGAGTAAGGTGCGGTTGG+AGG | 0.486118 | 3_4:+26756710 | None:intergenic |
| AAATAAAATCAAAGAACAAA+AGG | 0.486150 | 3_4:+26751304 | None:intergenic |
| AAGCTATGGATTATAATTCA+AGG | 0.488473 | 3_4:-26751107 | Msa0496290:three_prime_UTR |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3_4:+26754305 | None:intergenic |
| CCAACGGTTCAGCTCCTCAA+TGG | 0.491008 | 3_4:-26751349 | Msa0496290:CDS |
| GAGTAAGGTGCGGTTGGAGG+AGG | 0.503378 | 3_4:+26756713 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3_4:-26754221 | Msa0496290:intron |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3_4:-26754155 | Msa0496290:intron |
| CCTTGTGGCCTGCAAAATGA+GGG | 0.521599 | 3_4:+26752718 | None:intergenic |
| TCTTAGCACATGATAAGCTA+TGG | 0.531279 | 3_4:-26751121 | Msa0496290:three_prime_UTR |
| TCTGACAGACCCAGAAAGAC+AGG | 0.531673 | 3_4:-26752659 | Msa0496290:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3_4:+26752703 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3_4:-26752684 | Msa0496290:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3_4:-26754189 | Msa0496290:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3_4:-26752938 | Msa0496290:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3_4:-26754314 | Msa0496290:intron |
| AGATCAGAGTAAGGTGCGGT+TGG | 0.552605 | 3_4:+26756707 | None:intergenic |
| ATTAGTCCAGCACTGACACT+TGG | 0.554330 | 3_4:-26752994 | Msa0496290:intron |
| CCATTGAGGAGCTGAACCGT+TGG | 0.557440 | 3_4:+26751349 | None:intergenic |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3_4:-26752705 | Msa0496290:CDS |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3_4:+26754405 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.565463 | 3_4:+26754671 | None:intergenic |
| TATCAGGAGAAAAGGTTGAG+AGG | 0.569076 | 3_4:-26751410 | Msa0496290:CDS |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3_4:-26754658 | Msa0496290:CDS |
| TCACGAACAAGATCAGAGTA+AGG | 0.583182 | 3_4:+26756698 | None:intergenic |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3_4:+26754304 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3_4:-26752910 | Msa0496290:CDS |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.592033 | 3_4:-26752979 | Msa0496290:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3_4:-26752687 | Msa0496290:CDS |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3_4:+26754308 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3_4:-26754450 | Msa0496290:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3_4:-26754447 | Msa0496290:CDS |
| AGAAAACTGATAGCTTAGAA+GGG | 0.617589 | 3_4:-26751251 | Msa0496290:exon |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3_4:+26754309 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3_4:-26752928 | Msa0496290:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3_4:+26752911 | None:intergenic |
| AAGAGGTGATGCAGGTCCAG+TGG | 0.628367 | 3_4:+26754679 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3_4:-26754185 | Msa0496290:CDS |
| ATGTTGAAGTACAAATCCAA+CGG | 0.669092 | 3_4:-26751365 | Msa0496290:CDS |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3_4:-26752952 | Msa0496290:CDS |
| TTCCATATAAGAGTCCATTG+AGG | 0.690563 | 3_4:+26751335 | None:intergenic |
| ACATGTGGTGTAAATTATGG+CGG | 0.692070 | 3_4:-26751218 | Msa0496290:three_prime_UTR |
| AACAAGATCAGAGTAAGGTG+CGG | 0.707258 | 3_4:+26756703 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3_4:+26754662 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3_4:-26752935 | Msa0496290:CDS |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3_4:-26754655 | Msa0496290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAAATTTATTTTTT+TGG | - | chr3_4:26751643-26751662 | Msa0496290:intron | 0.0% |
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3_4:26752666-26752685 | Msa0496290:CDS | 10.0% |
| !! | TAAAATTAGTAATATATGTA+TGG | - | chr3_4:26755475-26755494 | Msa0496290:intron | 10.0% |
| !! | TAAACATACTTACTTTAATT+TGG | + | chr3_4:26751264-26751283 | None:intergenic | 15.0% |
| !! | AAAATTAAAATTCGCTTAAA+TGG | - | chr3_4:26752086-26752105 | Msa0496290:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3_4:26752680-26752699 | Msa0496290:CDS | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3_4:26752828-26752847 | Msa0496290:intron | 15.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3_4:26753408-26753427 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3_4:26753412-26753431 | Msa0496290:intron | 15.0% |
| !!! | TTTTTTTTTATCTCTTGTTA+CGG | - | chr3_4:26754286-26754305 | Msa0496290:intron | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3_4:26754382-26754401 | Msa0496290:CDS | 15.0% |
| !!! | ACAAATCTATAAATGTTTTA+AGG | + | chr3_4:26755792-26755811 | None:intergenic | 15.0% |
| !! | AAATTCTACTTATGAAAAAA+TGG | - | chr3_4:26756038-26756057 | Msa0496290:intron | 15.0% |
| !! | TGCATTAAATTAACAAAAAA+TGG | + | chr3_4:26756452-26756471 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAATTTAATGC+AGG | - | chr3_4:26756451-26756470 | Msa0496290:intron | 15.0% |
| !! | AAATAAAATCAAAGAACAAA+AGG | + | chr3_4:26756585-26756604 | None:intergenic | 15.0% |
| !!! | ATTCTTGGTTTTTTATTTTG+TGG | - | chr3_4:26751338-26751357 | Msa0496290:CDS | 20.0% |
| !!! | TTCTTGGTTTTTTATTTTGT+GGG | - | chr3_4:26751339-26751358 | Msa0496290:CDS | 20.0% |
| !!! | ATCAATTTTGTTTGTATGAT+GGG | - | chr3_4:26751366-26751385 | Msa0496290:CDS | 20.0% |
| !!! | ATTTCTGAAAATCACATAAT+TGG | - | chr3_4:26751491-26751510 | Msa0496290:intron | 20.0% |
| !!! | AAGTGAAATTTGATATTTTG+TGG | - | chr3_4:26752030-26752049 | Msa0496290:intron | 20.0% |
| !!! | AGTGAAATTTGATATTTTGT+GGG | - | chr3_4:26752031-26752050 | Msa0496290:intron | 20.0% |
| !! | CATAAATATCATAAGAAATG+CGG | - | chr3_4:26752122-26752141 | Msa0496290:intron | 20.0% |
| !!! | TTTTAGATTACTGTAAGAAA+GGG | - | chr3_4:26752183-26752202 | Msa0496290:intron | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+GGG | + | chr3_4:26752710-26752729 | None:intergenic | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+AGG | + | chr3_4:26752873-26752892 | None:intergenic | 20.0% |
| !! | ATATGACAAAGAAATATGAT+TGG | - | chr3_4:26752905-26752924 | Msa0496290:CDS | 20.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3_4:26753006-26753025 | Msa0496290:intron | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3_4:26753619-26753638 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3_4:26753620-26753639 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3_4:26753974-26753993 | Msa0496290:intron | 20.0% |
| !!! | TTTTTTTTATCTCTTGTTAC+GGG | - | chr3_4:26754287-26754306 | Msa0496290:intron | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3_4:26754413-26754432 | None:intergenic | 20.0% |
| !! | ATATACTTTCCATTTATATG+TGG | - | chr3_4:26754836-26754855 | Msa0496290:intron | 20.0% |
| !! | AAATCTTTACCACATATAAA+TGG | + | chr3_4:26754848-26754867 | None:intergenic | 20.0% |
| !!! | TTTAATTTGTCTTACAAATC+AGG | - | chr3_4:26755431-26755450 | Msa0496290:intron | 20.0% |
| !! | TGTCTTTATAATTATCTATG+TGG | - | chr3_4:26756224-26756243 | Msa0496290:intron | 20.0% |
| !!! | TTACTTTAATTTGGTACCAA+GGG | + | chr3_4:26751255-26751274 | None:intergenic | 25.0% |
| ! | GCAGAAAAAACACTAAAAAT+TGG | + | chr3_4:26751316-26751335 | None:intergenic | 25.0% |
| !!! | GATCAATTTTGTTTGTATGA+TGG | - | chr3_4:26751365-26751384 | Msa0496290:CDS | 25.0% |
| ! | TTAACGTTAGGATTCATAAA+GGG | - | chr3_4:26751858-26751877 | Msa0496290:intron | 25.0% |
| ! | AATGTTGAGTCAACTAAATA+AGG | - | chr3_4:26751909-26751928 | Msa0496290:intron | 25.0% |
| ! | ATGTTGAGTCAACTAAATAA+GGG | - | chr3_4:26751910-26751929 | Msa0496290:intron | 25.0% |
| ! | TAAATAACTATGACATGACA+TGG | + | chr3_4:26751982-26752001 | None:intergenic | 25.0% |
| !!! | TATGAAGAATTGTTTTTCAG+AGG | - | chr3_4:26752059-26752078 | Msa0496290:intron | 25.0% |
| !! | GTAATCTAAAACGATACATA+CGG | + | chr3_4:26752174-26752193 | None:intergenic | 25.0% |
| !!! | GTTTTAGATTACTGTAAGAA+AGG | - | chr3_4:26752182-26752201 | Msa0496290:intron | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3_4:26752510-26752529 | None:intergenic | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3_4:26752532-26752551 | Msa0496290:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3_4:26752533-26752552 | Msa0496290:intron | 25.0% |
| ! | GTCAATTTCATTTGTATGAT+GGG | - | chr3_4:26752560-26752579 | Msa0496290:intron | 25.0% |
| !!! | GAATCATGATTTGTTAAGAA+TGG | + | chr3_4:26752711-26752730 | None:intergenic | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3_4:26752733-26752752 | Msa0496290:intron | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3_4:26753151-26753170 | None:intergenic | 25.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3_4:26753152-26753171 | None:intergenic | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3_4:26753272-26753291 | None:intergenic | 25.0% |
| !! | ATATTTTTCTGTGATGTATG+TGG | - | chr3_4:26754216-26754235 | Msa0496290:intron | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3_4:26754331-26754350 | Msa0496290:CDS | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3_4:26754375-26754394 | None:intergenic | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3_4:26754931-26754950 | Msa0496290:intron | 25.0% |
| ! | TGTCAGTTACAAAAAGAAAA+AGG | + | chr3_4:26755316-26755335 | None:intergenic | 25.0% |
| !! | ATATCTGGAATAGTTTATTC+AGG | - | chr3_4:26755394-26755413 | Msa0496290:intron | 25.0% |
| ! | GTTACAAATAATAGATCACT+AGG | + | chr3_4:26755681-26755700 | None:intergenic | 25.0% |
| !! | AATTCAATGAATCCAACTTT+TGG | + | chr3_4:26755769-26755788 | None:intergenic | 25.0% |
| ! | ATACAAGATTATAAAGTAGC+AGG | - | chr3_4:26755847-26755866 | Msa0496290:intron | 25.0% |
| ! | TTGAAAAGACAACTAGAAAA+GGG | + | chr3_4:26755873-26755892 | None:intergenic | 25.0% |
| ! | TCATAAGTAGAATTTGAAAG+TGG | + | chr3_4:26756033-26756052 | None:intergenic | 25.0% |
| ! | TAATTTAATGCAGGTTTATC+AGG | - | chr3_4:26756460-26756479 | Msa0496290:intron | 25.0% |
| !! | AAGCTATGGATTATAATTCA+AGG | - | chr3_4:26756779-26756798 | Msa0496290:CDS | 25.0% |
| !!! | CTCTCACAATGATTTTGATT+TGG | + | chr3_4:26751119-26751138 | None:intergenic | 30.0% |
| ! | GAAAAGATTGAAGCTTTTGT+TGG | + | chr3_4:26751226-26751245 | None:intergenic | 30.0% |
| !! | CTTACTTTAATTTGGTACCA+AGG | + | chr3_4:26751256-26751275 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTCTGCAAATTCT+TGG | - | chr3_4:26751323-26751342 | Msa0496290:CDS | 30.0% |
| TTGGATGTTATCATATGTGT+TGG | - | chr3_4:26751510-26751529 | Msa0496290:intron | 30.0% | |
| TATGAAGCACAAATACTTCT+CGG | + | chr3_4:26751588-26751607 | None:intergenic | 30.0% | |
| !!! | GGTTTTGAATAGTTAACGTT+AGG | - | chr3_4:26751846-26751865 | Msa0496290:intron | 30.0% |
| GTTAACGTTAGGATTCATAA+AGG | - | chr3_4:26751857-26751876 | Msa0496290:intron | 30.0% | |
| TAACGTTAGGATTCATAAAG+GGG | - | chr3_4:26751859-26751878 | Msa0496290:intron | 30.0% | |
| TTAAAATTCGCTTAAATGGC+AGG | - | chr3_4:26752090-26752109 | Msa0496290:intron | 30.0% | |
| TAAAATTCGCTTAAATGGCA+GGG | - | chr3_4:26752091-26752110 | Msa0496290:intron | 30.0% | |
| AAGAAAGGGAATTGAGTATT+TGG | - | chr3_4:26752197-26752216 | Msa0496290:intron | 30.0% | |
| GAATTGAGTATTTGGTATTG+TGG | - | chr3_4:26752205-26752224 | Msa0496290:intron | 30.0% | |
| AACAAACTGTGGTACAAAAA+GGG | + | chr3_4:26752455-26752474 | None:intergenic | 30.0% | |
| GGTCAATTTCATTTGTATGA+TGG | - | chr3_4:26752559-26752578 | Msa0496290:intron | 30.0% | |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3_4:26752748-26752767 | Msa0496290:intron | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3_4:26752921-26752940 | Msa0496290:CDS | 30.0% |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3_4:26752945-26752964 | Msa0496290:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3_4:26752973-26752992 | None:intergenic | 30.0% | |
| ATCTTAATGAATCTGGATTC+AGG | - | chr3_4:26752972-26752991 | Msa0496290:CDS | 30.0% | |
| AGGATTCATCTTAATGAATC+TGG | - | chr3_4:26753026-26753045 | Msa0496290:intron | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3_4:26753432-26753451 | Msa0496290:intron | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3_4:26753436-26753455 | Msa0496290:intron | 30.0% | |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3_4:26753613-26753632 | None:intergenic | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3_4:26753843-26753862 | None:intergenic | 30.0% | |
| ACAATAGTAGTATCAGAGAT+AGG | - | chr3_4:26753853-26753872 | Msa0496290:intron | 30.0% | |
| CAATAGTAGTATCAGAGATA+GGG | - | chr3_4:26753854-26753873 | Msa0496290:intron | 30.0% | |
| AATAGTAGTATCAGAGATAG+GGG | - | chr3_4:26753855-26753874 | Msa0496290:intron | 30.0% | |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3_4:26753981-26754000 | Msa0496290:intron | 30.0% |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3_4:26754119-26754138 | None:intergenic | 30.0% | |
| ATGTATAACCTAACTCATGA+TGG | + | chr3_4:26754140-26754159 | None:intergenic | 30.0% | |
| TGTATGTGGAAATAGAAGTA+AGG | - | chr3_4:26754230-26754249 | Msa0496290:intron | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3_4:26754424-26754443 | Msa0496290:CDS | 30.0% | |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3_4:26754674-26754693 | None:intergenic | 30.0% |
| ATTGACATGAAATTTGATGG+CGG | - | chr3_4:26754934-26754953 | Msa0496290:intron | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3_4:26755099-26755118 | Msa0496290:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3_4:26755110-26755129 | None:intergenic | 30.0% |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3_4:26755190-26755209 | Msa0496290:intron | 30.0% | |
| AAAAAGAAAAAGGAATCTGC+AGG | + | chr3_4:26755306-26755325 | None:intergenic | 30.0% | |
| GTTTAATGACGATGAAATAG+AGG | - | chr3_4:26755352-26755371 | Msa0496290:intron | 30.0% | |
| ATGAAATAGAGGAAAAGGAA+AGG | - | chr3_4:26755363-26755382 | Msa0496290:intron | 30.0% | |
| GGAAAGGTTATTTGTATATC+TGG | - | chr3_4:26755379-26755398 | Msa0496290:intron | 30.0% | |
| AATAGTTTATTCAGGCACAT+AGG | - | chr3_4:26755402-26755421 | Msa0496290:intron | 30.0% | |
| GTTGAAAAGACAACTAGAAA+AGG | + | chr3_4:26755874-26755893 | None:intergenic | 30.0% | |
| !! | AGACCTAACTATTTTTCTAC+TGG | - | chr3_4:26755930-26755949 | Msa0496290:intron | 30.0% |
| AAGCCAGTAGAAAAATAGTT+AGG | + | chr3_4:26755936-26755955 | None:intergenic | 30.0% | |
| GCATAATGATGAGATATGAA+TGG | + | chr3_4:26756177-26756196 | None:intergenic | 30.0% | |
| TGAGAGGTAAAGAAAGATAT+AGG | - | chr3_4:26756492-26756511 | Msa0496290:intron | 30.0% | |
| GAGAGGTAAAGAAAGATATA+GGG | - | chr3_4:26756493-26756512 | Msa0496290:intron | 30.0% | |
| ATGTTGAAGTACAAATCCAA+CGG | - | chr3_4:26756521-26756540 | Msa0496290:intron | 30.0% | |
| ATCAAAGAACAAAAGGTTTG+AGG | + | chr3_4:26756578-26756597 | None:intergenic | 30.0% | |
| ! | TAAGCTATCAGTTTTCTCAT+GGG | + | chr3_4:26756632-26756651 | None:intergenic | 30.0% |
| AGAAAACTGATAGCTTAGAA+GGG | - | chr3_4:26756635-26756654 | Msa0496290:intron | 30.0% | |
| TTGACATGTGGTGTAAATTA+TGG | - | chr3_4:26756665-26756684 | Msa0496290:CDS | 30.0% | |
| ! | GTTTTTCTTAGATCAGTGAA+TGG | - | chr3_4:26756735-26756754 | Msa0496290:CDS | 30.0% |
| TATACAATGCTCTGTCCATA+AGG | - | chr3_4:26751676-26751695 | Msa0496290:intron | 35.0% | |
| TTTACTGACACGTGTAAATG+AGG | - | chr3_4:26751998-26752017 | Msa0496290:intron | 35.0% | |
| TTACTGACACGTGTAAATGA+GGG | - | chr3_4:26751999-26752018 | Msa0496290:intron | 35.0% | |
| !!! | CTGGTTACTTGTCATTTTTC+TGG | + | chr3_4:26752251-26752270 | None:intergenic | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3_4:26752363-26752382 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3_4:26752379-26752398 | Msa0496290:intron | 35.0% |
| GAACAAACTGTGGTACAAAA+AGG | + | chr3_4:26752456-26752475 | None:intergenic | 35.0% | |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3_4:26752538-26752557 | Msa0496290:intron | 35.0% |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3_4:26752762-26752781 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3_4:26752965-26752984 | Msa0496290:CDS | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3_4:26753170-26753189 | None:intergenic | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3_4:26753177-26753196 | Msa0496290:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3_4:26753178-26753197 | Msa0496290:intron | 35.0% | |
| ! | AAAAGCTGTTTCATGAGACA+AGG | + | chr3_4:26753309-26753328 | None:intergenic | 35.0% |
| ! | CATGAAACAGCTTTTCAGTT+TGG | - | chr3_4:26753314-26753333 | Msa0496290:intron | 35.0% |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3_4:26753525-26753544 | None:intergenic | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3_4:26753653-26753672 | None:intergenic | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3_4:26753697-26753716 | Msa0496290:intron | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3_4:26753730-26753749 | Msa0496290:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3_4:26753731-26753750 | Msa0496290:intron | 35.0% | |
| ! | ACATGTGATTTGTGATGGAA+TGG | - | chr3_4:26753946-26753965 | Msa0496290:intron | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3_4:26754032-26754051 | None:intergenic | 35.0% |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3_4:26754051-26754070 | None:intergenic | 35.0% | |
| CTATACATCCATCATGAGTT+AGG | - | chr3_4:26754129-26754148 | Msa0496290:intron | 35.0% | |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3_4:26754521-26754540 | None:intergenic | 35.0% |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3_4:26754557-26754576 | Msa0496290:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3_4:26754558-26754577 | Msa0496290:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3_4:26754655-26754674 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3_4:26754666-26754685 | None:intergenic | 35.0% |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3_4:26754806-26754825 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3_4:26754806-26754825 | Msa0496290:intron | 35.0% | |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3_4:26754813-26754832 | Msa0496290:intron | 35.0% |
| TCCACTTACCAACATAGATT+AGG | + | chr3_4:26754817-26754836 | None:intergenic | 35.0% | |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3_4:26754948-26754967 | Msa0496290:intron | 35.0% |
| CATTGCTTGAAACATGATAC+AGG | + | chr3_4:26755005-26755024 | None:intergenic | 35.0% | |
| GTTTCAAGCAATGCATCTAA+CGG | - | chr3_4:26755012-26755031 | Msa0496290:intron | 35.0% | |
| TCTAACGGTTCTTCTATTGA+AGG | - | chr3_4:26755027-26755046 | Msa0496290:intron | 35.0% | |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3_4:26755139-26755158 | Msa0496290:intron | 35.0% |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3_4:26755189-26755208 | Msa0496290:intron | 35.0% | |
| AAGTCTATACCTGTCTTTCT+GGG | + | chr3_4:26755239-26755258 | None:intergenic | 35.0% | |
| CAATACTCTGACTACATCAA+CGG | + | chr3_4:26755272-26755291 | None:intergenic | 35.0% | |
| TGACGATGAAATAGAGGAAA+AGG | - | chr3_4:26755358-26755377 | Msa0496290:intron | 35.0% | |
| TCAGATTTGCAAACTATGCT+AGG | - | chr3_4:26755560-26755579 | Msa0496290:intron | 35.0% | |
| ATATACACTGTAAAGCCTGT+GGG | + | chr3_4:26755910-26755929 | None:intergenic | 35.0% | |
| TATATACACTGTAAAGCCTG+TGG | + | chr3_4:26755911-26755930 | None:intergenic | 35.0% | |
| !!! | TTTTCTACTGGCTTCTTAAG+AGG | - | chr3_4:26755942-26755961 | Msa0496290:intron | 35.0% |
| GACCTACGTCAAGAAATATT+AGG | - | chr3_4:26755987-26756006 | Msa0496290:intron | 35.0% | |
| CTCCTAATATTTCTTGACGT+AGG | + | chr3_4:26755992-26756011 | None:intergenic | 35.0% | |
| CTACGTCAAGAAATATTAGG+AGG | - | chr3_4:26755990-26756009 | Msa0496290:intron | 35.0% | |
| TTCCATATAAGAGTCCATTG+AGG | + | chr3_4:26756554-26756573 | None:intergenic | 35.0% | |
| ! | AAGCTATCAGTTTTCTCATG+GGG | + | chr3_4:26756631-26756650 | None:intergenic | 35.0% |
| ! | CTAAGCTATCAGTTTTCTCA+TGG | + | chr3_4:26756633-26756652 | None:intergenic | 35.0% |
| GAGAAAACTGATAGCTTAGA+AGG | - | chr3_4:26756634-26756653 | Msa0496290:intron | 35.0% | |
| ACATGTGGTGTAAATTATGG+CGG | - | chr3_4:26756668-26756687 | Msa0496290:CDS | 35.0% | |
| TCTTAGCACATGATAAGCTA+TGG | - | chr3_4:26756765-26756784 | Msa0496290:CDS | 35.0% | |
| AACAAGATCAGAGTAAGGTG+CGG | + | chr3_4:26751186-26751205 | None:intergenic | 40.0% | |
| TCACGAACAAGATCAGAGTA+AGG | + | chr3_4:26751191-26751210 | None:intergenic | 40.0% | |
| ! | CAATCTTTTCACGATTCCCT+TGG | - | chr3_4:26751236-26751255 | Msa0496290:three_prime_UTR | 40.0% |
| GCAGCAACTAAGTGATAACT+GGG | + | chr3_4:26751425-26751444 | None:intergenic | 40.0% | |
| TCAGTGTCTGTGTGTTTCAT+AGG | + | chr3_4:26751447-26751466 | None:intergenic | 40.0% | |
| !! | CATATGTGTTGGTGTTGTGT+TGG | - | chr3_4:26751521-26751540 | Msa0496290:intron | 40.0% |
| !! | TGTTGGTGTTGTGTTGGTTT+CGG | - | chr3_4:26751527-26751546 | Msa0496290:intron | 40.0% |
| GCACAAATACTTCTCGGATT+AGG | + | chr3_4:26751582-26751601 | None:intergenic | 40.0% | |
| !! | TAGAGAGCATTTGCTTGTGT+TGG | - | chr3_4:26751617-26751636 | Msa0496290:intron | 40.0% |
| TATTGCTAGGCTAGATACCT+TGG | - | chr3_4:26751710-26751729 | Msa0496290:intron | 40.0% | |
| TATTCAAAACCGCCGAATCA+GGG | + | chr3_4:26751837-26751856 | None:intergenic | 40.0% | |
| !!! | GCGGATTTTGGTTTTGATTC+TGG | + | chr3_4:26752270-26752289 | None:intergenic | 40.0% |
| CTAGATCGATGAACAAACTG+TGG | + | chr3_4:26752466-26752485 | None:intergenic | 40.0% | |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3_4:26753060-26753079 | None:intergenic | 40.0% |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3_4:26753163-26753182 | Msa0496290:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3_4:26753171-26753190 | None:intergenic | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3_4:26753179-26753198 | Msa0496290:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3_4:26753180-26753199 | Msa0496290:intron | 40.0% | |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3_4:26753227-26753246 | None:intergenic | 40.0% |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3_4:26753228-26753247 | Msa0496290:intron | 40.0% | |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3_4:26753242-26753261 | Msa0496290:intron | 40.0% |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3_4:26753439-26753458 | Msa0496290:intron | 40.0% | |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3_4:26753484-26753503 | None:intergenic | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3_4:26753492-26753511 | None:intergenic | 40.0% |
| CATAACAAGCGCATCATTCA+TGG | - | chr3_4:26753490-26753509 | Msa0496290:intron | 40.0% | |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3_4:26753593-26753612 | None:intergenic | 40.0% | |
| ! | ACATTTCCACTCAAAGCATC+TGG | + | chr3_4:26753674-26753693 | None:intergenic | 40.0% |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3_4:26753699-26753718 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3_4:26753746-26753765 | None:intergenic | 40.0% |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3_4:26753892-26753911 | Msa0496290:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3_4:26753899-26753918 | None:intergenic | 40.0% | |
| ! | GTGATTTGTGATGGAATGGT+TGG | - | chr3_4:26753950-26753969 | Msa0496290:intron | 40.0% |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3_4:26754042-26754061 | Msa0496290:intron | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3_4:26754050-26754069 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3_4:26754050-26754069 | Msa0496290:intron | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3_4:26754516-26754535 | None:intergenic | 40.0% |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3_4:26754516-26754535 | Msa0496290:intron | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3_4:26754559-26754578 | Msa0496290:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3_4:26754587-26754606 | Msa0496290:intron | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3_4:26754957-26754976 | Msa0496290:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3_4:26754958-26754977 | Msa0496290:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3_4:26755186-26755205 | None:intergenic | 40.0% | |
| CAAGTCTATACCTGTCTTTC+TGG | + | chr3_4:26755240-26755259 | None:intergenic | 40.0% | |
| GTAACTGACATATTTGCCTC+TGG | - | chr3_4:26755326-26755345 | Msa0496290:intron | 40.0% | |
| ATCGTCATTAAACAAGCCAG+AGG | + | chr3_4:26755345-26755364 | None:intergenic | 40.0% | |
| !!! | CTACCATTTTTTGCTATCCG+CGG | - | chr3_4:26755640-26755659 | Msa0496290:intron | 40.0% |
| TCCTTGGAAAAGCCAAAAGT+TGG | - | chr3_4:26755754-26755773 | Msa0496290:intron | 40.0% | |
| !!! | TCCAACTTTTGGCTTTTCCA+AGG | + | chr3_4:26755758-26755777 | None:intergenic | 40.0% |
| TTGTTGTCAGAGTGTGTGAA+AGG | - | chr3_4:26755808-26755827 | Msa0496290:intron | 40.0% | |
| GTGTGAAAGGAAGGATGTTA+AGG | - | chr3_4:26755821-26755840 | Msa0496290:intron | 40.0% | |
| !! | GTCGTAGACTATTTCTACAG+GGG | + | chr3_4:26755970-26755989 | None:intergenic | 40.0% |
| !! | GGTCGTAGACTATTTCTACA+GGG | + | chr3_4:26755971-26755990 | None:intergenic | 40.0% |
| !! | AGGTCGTAGACTATTTCTAC+AGG | + | chr3_4:26755972-26755991 | None:intergenic | 40.0% |
| GAAACTAACATCGCACAAAG+TGG | + | chr3_4:26756199-26756218 | None:intergenic | 40.0% | |
| TCTATGTGGTGAGATGTGAT+TGG | - | chr3_4:26756238-26756257 | Msa0496290:intron | 40.0% | |
| TGCAGGTTTATCAGGAGAAA+AGG | - | chr3_4:26756468-26756487 | Msa0496290:intron | 40.0% | |
| TATCAGGAGAAAAGGTTGAG+AGG | - | chr3_4:26756476-26756495 | Msa0496290:intron | 40.0% | |
| ! | CTCCTCAATGGACTCTTATA+TGG | - | chr3_4:26756549-26756568 | Msa0496290:intron | 40.0% |
| ! | AAGGGTAGCTTTTTGACATG+TGG | - | chr3_4:26756653-26756672 | Msa0496290:CDS | 40.0% |
| GGCAGCAACTAAGTGATAAC+TGG | + | chr3_4:26751426-26751445 | None:intergenic | 45.0% | |
| ! | AGAGCATTTGCTTGTGTTGG+TGG | - | chr3_4:26751620-26751639 | Msa0496290:intron | 45.0% |
| GGTATCTAGCCTAGCAATAC+CGG | + | chr3_4:26751709-26751728 | None:intergenic | 45.0% | |
| ! | AGTGCCAAGGGCTCTTATTT+CGG | + | chr3_4:26751757-26751776 | None:intergenic | 45.0% |
| TTAGTCCCATCCGGTTCAAA+GGG | + | chr3_4:26751813-26751832 | None:intergenic | 45.0% | |
| ATTAGTCCCATCCGGTTCAA+AGG | + | chr3_4:26751814-26751833 | None:intergenic | 45.0% | |
| !! | AATCAGGGATTAGTCCCATC+CGG | + | chr3_4:26751822-26751841 | None:intergenic | 45.0% |
| GATGGGACTAATCCCTGATT+CGG | - | chr3_4:26751822-26751841 | Msa0496290:intron | 45.0% | |
| CTATTCAAAACCGCCGAATC+AGG | + | chr3_4:26751838-26751857 | None:intergenic | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3_4:26752289-26752308 | None:intergenic | 45.0% | |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3_4:26752329-26752348 | None:intergenic | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3_4:26752345-26752364 | None:intergenic | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3_4:26752347-26752366 | Msa0496290:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3_4:26752348-26752367 | Msa0496290:intron | 45.0% | |
| ! | GGATTCAGGTCTTGTGAAAC+AGG | - | chr3_4:26752986-26753005 | Msa0496290:CDS | 45.0% |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3_4:26753231-26753250 | Msa0496290:intron | 45.0% | |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3_4:26753584-26753603 | None:intergenic | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3_4:26753585-26753604 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3_4:26753667-26753686 | None:intergenic | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3_4:26753665-26753684 | Msa0496290:intron | 45.0% |
| AGCTTCACAACCAATACGGA+CGG | - | chr3_4:26753701-26753720 | Msa0496290:intron | 45.0% | |
| ! | CGCTGACATGTGATTTGTGA+TGG | - | chr3_4:26753941-26753960 | Msa0496290:intron | 45.0% |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3_4:26754493-26754512 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3_4:26754490-26754509 | Msa0496290:intron | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3_4:26754568-26754587 | None:intergenic | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3_4:26754568-26754587 | Msa0496290:intron | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3_4:26754569-26754588 | Msa0496290:intron | 45.0% | |
| ! | AGTGTCAGTGCTGGACTAAT+TGG | + | chr3_4:26754892-26754911 | None:intergenic | 45.0% |
| !! | ATTAGTCCAGCACTGACACT+TGG | - | chr3_4:26754892-26754911 | Msa0496290:intron | 45.0% |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3_4:26754951-26754970 | Msa0496290:intron | 45.0% |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3_4:26755104-26755123 | Msa0496290:intron | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3_4:26755199-26755218 | Msa0496290:intron | 45.0% | |
| CAACCGCGGATAGCAAAAAA+TGG | + | chr3_4:26755646-26755665 | None:intergenic | 45.0% | |
| !!! | CATTTTTTGCTATCCGCGGT+TGG | - | chr3_4:26755644-26755663 | Msa0496290:intron | 45.0% |
| GTTTCGCAAATGACAGGCTA+AGG | + | chr3_4:26755723-26755742 | None:intergenic | 45.0% | |
| AAGGCAGTTTCGCAAATGAC+AGG | + | chr3_4:26755729-26755748 | None:intergenic | 45.0% | |
| GAAACTGCCTTGATGTTCCT+TGG | - | chr3_4:26755738-26755757 | Msa0496290:intron | 45.0% | |
| ! | GGCTTTTCCAAGGAACATCA+AGG | + | chr3_4:26755748-26755767 | None:intergenic | 45.0% |
| TGTCAGAGTGTGTGAAAGGA+AGG | - | chr3_4:26755812-26755831 | Msa0496290:intron | 45.0% | |
| ! | ACATTTGAGATTGCTCCCAC+AGG | - | chr3_4:26755892-26755911 | Msa0496290:intron | 45.0% |
| AGATCAGAGTAAGGTGCGGT+TGG | + | chr3_4:26751182-26751201 | None:intergenic | 50.0% | |
| CACGATACGTATCTGACACC+AGG | - | chr3_4:26751551-26751570 | Msa0496290:intron | 50.0% | |
| ! | AATACCGGCATTGGGCCTTA+TGG | + | chr3_4:26751694-26751713 | None:intergenic | 50.0% |
| AGCCTAGCAATACCGGCATT+GGG | + | chr3_4:26751702-26751721 | None:intergenic | 50.0% | |
| TAGCCTAGCAATACCGGCAT+TGG | + | chr3_4:26751703-26751722 | None:intergenic | 50.0% | |
| TTCGAACTCAGGTGAAGCCA+AGG | + | chr3_4:26751730-26751749 | None:intergenic | 50.0% | |
| ! | ATTTCGGTGGGTTCGAACTC+AGG | + | chr3_4:26751741-26751760 | None:intergenic | 50.0% |
| ! | CCAAGGGCTCTTATTTCGGT+GGG | + | chr3_4:26751753-26751772 | None:intergenic | 50.0% |
| GTGGACTCATCAAGTGCCAA+GGG | + | chr3_4:26751769-26751788 | None:intergenic | 50.0% | |
| ! | AGTGGACTCATCAAGTGCCA+AGG | + | chr3_4:26751770-26751789 | None:intergenic | 50.0% |
| TGGCACTTGATGAGTCCACT+CGG | - | chr3_4:26751770-26751789 | Msa0496290:intron | 50.0% | |
| GTTCAAAGGGCTGAAGCTGT+GGG | + | chr3_4:26751800-26751819 | None:intergenic | 50.0% | |
| ACAGCTTCAGCCCTTTGAAC+CGG | - | chr3_4:26751800-26751819 | Msa0496290:intron | 50.0% | |
| TTCAGCCCTTTGAACCGGAT+GGG | - | chr3_4:26751805-26751824 | Msa0496290:intron | 50.0% | |
| TGTACAACAGTCATGCGTGC+AGG | + | chr3_4:26751949-26751968 | None:intergenic | 50.0% | |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3_4:26752282-26752301 | None:intergenic | 50.0% |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3_4:26753192-26753211 | None:intergenic | 50.0% | |
| TACTATAGGGGGTAAGCCAC+TGG | - | chr3_4:26753191-26753210 | Msa0496290:intron | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3_4:26753218-26753237 | None:intergenic | 50.0% | |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3_4:26753580-26753599 | None:intergenic | 50.0% |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3_4:26754580-26754599 | Msa0496290:intron | 50.0% | |
| GAAGAACCAAGTGTCAGTGC+TGG | + | chr3_4:26754901-26754920 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3_4:26754907-26754926 | Msa0496290:intron | 50.0% |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3_4:26754978-26754997 | None:intergenic | 50.0% | |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3_4:26754976-26754995 | Msa0496290:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3_4:26755160-26755179 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3_4:26755160-26755179 | Msa0496290:intron | 50.0% |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3_4:26755171-26755190 | None:intergenic | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3_4:26755172-26755191 | None:intergenic | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3_4:26755181-26755200 | Msa0496290:intron | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3_4:26755202-26755221 | Msa0496290:intron | 50.0% | |
| TCTGACAGACCCAGAAAGAC+AGG | - | chr3_4:26755227-26755246 | Msa0496290:intron | 50.0% | |
| GTGCGGTTGGAGGAGGATAA+GGG | + | chr3_4:26751169-26751188 | None:intergenic | 55.0% | |
| TCAGAGTAAGGTGCGGTTGG+AGG | + | chr3_4:26751179-26751198 | None:intergenic | 55.0% | |
| ! | TTCTCGGATTAGGCGTGTCC+TGG | + | chr3_4:26751572-26751591 | None:intergenic | 55.0% |
| CTGTCCATAAGGCCCAATGC+CGG | - | chr3_4:26751687-26751706 | Msa0496290:intron | 55.0% | |
| CCCACCGAAATAAGAGCCCT+TGG | - | chr3_4:26751750-26751769 | Msa0496290:intron | 55.0% | |
| ! | GCCAAGGGCTCTTATTTCGG+TGG | + | chr3_4:26751754-26751773 | None:intergenic | 55.0% |
| GGCACTTGATGAGTCCACTC+GGG | - | chr3_4:26751771-26751790 | Msa0496290:intron | 55.0% | |
| GGTTCAAAGGGCTGAAGCTG+TGG | + | chr3_4:26751801-26751820 | None:intergenic | 55.0% | |
| CTTCAGCCCTTTGAACCGGA+TGG | - | chr3_4:26751804-26751823 | Msa0496290:intron | 55.0% | |
| !! | GGGACTAATCCCTGATTCGG+CGG | - | chr3_4:26751825-26751844 | Msa0496290:intron | 55.0% |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3_4:26752322-26752341 | None:intergenic | 55.0% | |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3_4:26752325-26752344 | None:intergenic | 55.0% | |
| AAGAGGTGATGCAGGTCCAG+TGG | + | chr3_4:26753210-26753229 | None:intergenic | 55.0% | |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3_4:26753581-26753600 | None:intergenic | 55.0% |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3_4:26753714-26753733 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3_4:26755168-26755187 | Msa0496290:intron | 55.0% |
| GGAATCAGTGTTGCCAACCG+CGG | + | chr3_4:26755660-26755679 | None:intergenic | 55.0% | |
| CCATTGAGGAGCTGAACCGT+TGG | + | chr3_4:26756540-26756559 | None:intergenic | 55.0% | |
| CCAACGGTTCAGCTCCTCAA+TGG | - | chr3_4:26756537-26756556 | Msa0496290:intron | 55.0% | |
| GGTGCGGTTGGAGGAGGATA+AGG | + | chr3_4:26751170-26751189 | None:intergenic | 60.0% | |
| GAGTAAGGTGCGGTTGGAGG+AGG | + | chr3_4:26751176-26751195 | None:intergenic | 60.0% | |
| GGCCCAATGCCGGTATTGCT+AGG | - | chr3_4:26751697-26751716 | Msa0496290:intron | 60.0% | |
| GAAGCTGTGGGATACCCGAG+TGG | + | chr3_4:26751788-26751807 | None:intergenic | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3_4:26752312-26752331 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3_4:26752319-26752338 | None:intergenic | 60.0% | |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3_4:26753572-26753591 | Msa0496290:intron | 60.0% | |
| GCTATTGCGCTGCTGCGTAG+CGG | - | chr3_4:26755605-26755624 | Msa0496290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 26751086 | 26756822 | 26751086 | ID=Msa0496290;Name=Msa0496290 |
| chr3_4 | mRNA | 26751086 | 26756822 | 26751086 | ID=Msa0496290-mRNA-1;Parent=Msa0496290;Name=Msa0496290-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.42|1|0.5|0.57|7|170|281 |
| chr3_4 | exon | 26751086 | 26751435 | 26751086 | ID=Msa0496290-mRNA-1:exon:6402;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26752660 | 26752747 | 26752660 | ID=Msa0496290-mRNA-1:exon:6401;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26752904 | 26753006 | 26752904 | ID=Msa0496290-mRNA-1:exon:6400;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26754156 | 26754233 | 26754156 | ID=Msa0496290-mRNA-1:exon:6399;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26754315 | 26754474 | 26754315 | ID=Msa0496290-mRNA-1:exon:6398;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26754645 | 26754709 | 26754645 | ID=Msa0496290-mRNA-1:exon:6397;Parent=Msa0496290-mRNA-1 |
| chr3_4 | exon | 26756651 | 26756822 | 26756651 | ID=Msa0496290-mRNA-1:exon:6396;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26756651 | 26756822 | 26756651 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26754645 | 26754709 | 26754645 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26754315 | 26754474 | 26754315 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26754156 | 26754233 | 26754156 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26752904 | 26753006 | 26752904 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26752660 | 26752747 | 26752660 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | CDS | 26751256 | 26751435 | 26751256 | ID=Msa0496290-mRNA-1:cds;Parent=Msa0496290-mRNA-1 |
| chr3_4 | three_prime_UTR | 26751086 | 26751255 | 26751086 | ID=Msa0496290-mRNA-1:three_prime_utr;Parent=Msa0496290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
