AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0496320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0496320 MtrunA17_Chr3g0090311 100.000 183 0 0 1 183 1 183 1.42e-138 384
Msa0496320 MtrunA17_Chr7g0275421 34.400 125 81 1 27 151 12 135 1.13e-21 86.3
Msa0496320 MtrunA17_Chr3g0098461 33.152 184 95 6 2 183 6 163 3.54e-14 67.0
Msa0496320 MtrunA17_Chr7g0252251 31.373 153 96 4 23 169 65 214 4.50e-14 67.8
Msa0496320 MtrunA17_Chr3g0088851 44.444 99 46 2 2 100 6 95 4.71e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0496320 AT5G13780.1 88.202 178 20 1 1 178 1 177 1.91e-107 305
Msa0496320 AT1G03150.1 37.086 151 94 1 1 151 1 150 6.67e-31 110
Msa0496320 AT2G38130.2 34.921 126 79 3 23 148 38 160 1.91e-14 68.6
Msa0496320 AT2G38130.1 34.921 126 79 3 23 148 38 160 1.91e-14 68.6

Find 70 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTTGATTTGGAGATTT+AGG 0.093155 3_4:+26884880 None:intergenic
CATGGCGGTGGATGTTGTTC+TGG 0.202871 3_4:-26879764 Msa0496320:CDS
GGATTTGATTTGGAGATTTA+GGG 0.267031 3_4:+26884881 None:intergenic
TGATTTGGAGATTTAGGGTT+AGG 0.307805 3_4:+26884886 None:intergenic
ATCTCTACCACATCCTTTCA+TGG 0.316257 3_4:-26884750 Msa0496320:CDS
CATCGCGAGTAGGTCGTTTA+CGG 0.329073 3_4:+26884822 None:intergenic
TTGAGGACTCATCGGAAGTT+GGG 0.373691 3_4:-26884613 Msa0496320:CDS
GTGGAGTAGAGGATTTGATT+TGG 0.387768 3_4:+26884871 None:intergenic
CTCACCATCGGCATAATACT+TGG 0.397635 3_4:+26879862 None:intergenic
CCCTGTCTGACACAGGTGTT+TGG 0.408450 3_4:-26879980 Msa0496320:intron
CATGTCATGATGCTTGATTA+TGG 0.413261 3_4:-26879472 Msa0496320:three_prime_UTR
TTGTTAATTCAGAGAGAAAG+AGG 0.413840 3_4:-26879401 Msa0496320:three_prime_UTR
GATTACAACGGGCGTATTGT+TGG 0.428125 3_4:-26884703 Msa0496320:CDS
GGTAGAGATAATACTTCATC+TGG 0.430139 3_4:+26884764 None:intergenic
ATGGCGGTGGATGTTGTTCT+GGG 0.435178 3_4:-26879763 Msa0496320:CDS
AATTTGTACACAGAGACCTT+GGG 0.437232 3_4:-26879908 Msa0496320:CDS
AGTACGTGTCGCTGCACGTC+AGG 0.443312 3_4:-26879952 Msa0496320:CDS
ACGTAACAGAGAGCATTATT+CGG 0.452550 3_4:+26879593 None:intergenic
ATTACAACGGGCGTATTGTT+GGG 0.454521 3_4:-26884702 Msa0496320:CDS
AGGGGATTGCATACACAATC+AGG 0.457031 3_4:+26879718 None:intergenic
TACTTCATCTGGTAATTCTC+TGG 0.457563 3_4:+26884775 None:intergenic
CACCGCCATGGTGGTGGTGG+TGG 0.474493 3_4:+26879777 None:intergenic
TTACTTCTCTTGCTGTGTTG+AGG 0.475222 3_4:-26884630 Msa0496320:CDS
TAATTTGTACACAGAGACCT+TGG 0.488580 3_4:-26879909 Msa0496320:CDS
GATTTGGAGATTTAGGGTTA+GGG 0.490249 3_4:+26884887 None:intergenic
TAAATGAATGCACCTGGTTG+TGG 0.495495 3_4:-26879500 Msa0496320:three_prime_UTR
CTAGTTTGATATTGACAAGA+TGG 0.498485 3_4:-26879626 Msa0496320:three_prime_UTR
CACCACCACCACCATGGCGG+TGG 0.500042 3_4:-26879776 Msa0496320:CDS
TGGGTATGTTCTTGCGAAGA+TGG 0.502832 3_4:-26884683 Msa0496320:CDS
TGCGCAGAATGCTATGGAGC+AGG 0.507106 3_4:-26884566 Msa0496320:intron
GTTGAGGACTCATCGGAAGT+TGG 0.509733 3_4:-26884614 Msa0496320:CDS
GACTGCTGCGCAGAATGCTA+TGG 0.518137 3_4:-26884572 Msa0496320:CDS
ATCCACCGCCATGGTGGTGG+TGG 0.520798 3_4:+26879774 None:intergenic
TGGTGGTGGTGATGATGCTG+TGG 0.521737 3_4:+26879791 None:intergenic
AACATCCACCGCCATGGTGG+TGG 0.527634 3_4:+26879771 None:intergenic
GTGGGGAAATCGAATGTTGA+AGG 0.527854 3_4:+26884929 None:intergenic
ACGTTGCTGAAGATTACAAC+GGG 0.530845 3_4:-26884714 Msa0496320:CDS
TGTTGTTCTGGGGAGACCAA+GGG 0.540736 3_4:-26879752 Msa0496320:CDS
AAAGAAGCTGCGGCCATGAA+AGG 0.545740 3_4:+26884737 None:intergenic
ATGTTGTTCTGGGGAGACCA+AGG 0.560805 3_4:-26879753 Msa0496320:CDS
CGACATGAGGAAGCAACTCA+AGG 0.563874 3_4:-26879831 Msa0496320:CDS
TGGGGAAATCGAATGTTGAA+GGG 0.564663 3_4:+26884930 None:intergenic
TGGTGGTGATGATGCTGTGG+TGG 0.565313 3_4:+26879794 None:intergenic
TTGCTGTGTTGAGGACTCAT+CGG 0.568495 3_4:-26884621 Msa0496320:CDS
ACACCATTGTTGTGGAGTAG+AGG 0.569455 3_4:+26884860 None:intergenic
GCGTATGCACACCATTGTTG+TGG 0.579484 3_4:+26884852 None:intergenic
GTCGTAAGCATCCTCACCAT+CGG 0.583433 3_4:+26879850 None:intergenic
TGAGGACTCATCGGAAGTTG+GGG 0.585463 3_4:-26884612 Msa0496320:CDS
TCAGGCTTTAGCATTCCCCT+TGG 0.589203 3_4:+26879736 None:intergenic
TGACATGATGAACCACAACC+AGG 0.590159 3_4:+26879488 None:intergenic
TGTACAAATTAAAAGCTGCT+CGG 0.593994 3_4:+26879921 None:intergenic
GCTGCGGCCATGAAAGGATG+TGG 0.597525 3_4:+26884743 None:intergenic
GACATGAGGAAGCAACTCAA+GGG 0.598754 3_4:-26879830 Msa0496320:CDS
CAGAACAACATCCACCGCCA+TGG 0.604191 3_4:+26879765 None:intergenic
GGGGTACAAGATTCATGATG+TGG 0.625757 3_4:-26879888 Msa0496320:CDS
ATCATGAATCTTGTACCCCA+AGG 0.628310 3_4:+26879892 None:intergenic
GAAGAGACGAATGAGTGTCA+TGG 0.632268 3_4:-26884658 Msa0496320:CDS
GTTGTTCTGGGGAGACCAAG+GGG 0.632366 3_4:-26879751 Msa0496320:CDS
ATTTGTACACAGAGACCTTG+GGG 0.636869 3_4:-26879907 Msa0496320:CDS
CAAGTATTATGCCGATGGTG+AGG 0.639380 3_4:-26879861 Msa0496320:CDS
GTGAGGATGCTTACGACATG+AGG 0.640402 3_4:-26879844 Msa0496320:CDS
GTACAAGATTCATGATGTGG+AGG 0.644670 3_4:-26879885 Msa0496320:CDS
TGCACGCTTGCATCGCGAGT+AGG 0.650168 3_4:+26884812 None:intergenic
TACGTTGCTGAAGATTACAA+CGG 0.660668 3_4:-26884715 Msa0496320:CDS
AATCCTCTACTCCACAACAA+TGG 0.661614 3_4:-26884863 Msa0496320:exon
TCAGCAACGTAAAGAAGCTG+CGG 0.667671 3_4:+26884727 None:intergenic
AACAACATCCACCGCCATGG+TGG 0.672650 3_4:+26879768 None:intergenic
ACATGAGGAAGCAACTCAAG+GGG 0.673107 3_4:-26879829 Msa0496320:CDS
GAGGCCAAGTATTATGCCGA+TGG 0.673456 3_4:-26879866 Msa0496320:CDS
TGGCGGTGGATGTTGTTCTG+GGG 0.678191 3_4:-26879762 Msa0496320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTTAAAAAAAT+TGG - chr3_4:26881817-26881836 Msa0496320:intron 0.0%
!!! TATTTTATTTTAAAAAAATT+GGG - chr3_4:26881818-26881837 Msa0496320:intron 0.0%
!! ATAAGTTAATCTATTGAATT+TGG - chr3_4:26879878-26879897 Msa0496320:CDS 15.0%
!!! TTTTTTCAATAAAGATTACA+AGG - chr3_4:26879989-26880008 Msa0496320:intron 15.0%
!!! TTTTTCAATAAAGATTACAA+GGG - chr3_4:26879990-26880009 Msa0496320:intron 15.0%
!! ATTTATTCAATGAATCTAAA+AGG + chr3_4:26880506-26880525 None:intergenic 15.0%
!! ACTTATAGCTTATAATAAAA+TGG + chr3_4:26880668-26880687 None:intergenic 15.0%
!! ATAAGCATTTATATGATAAA+CGG + chr3_4:26881752-26881771 None:intergenic 15.0%
!! TTCTGTTATATTTAATGTAA+TGG - chr3_4:26882912-26882931 Msa0496320:intron 15.0%
!! TTAACTTAAACTTACTAAAT+AGG - chr3_4:26883734-26883753 Msa0496320:intron 15.0%
!! AGATTACACATTTCATAAAA+TGG + chr3_4:26880218-26880237 None:intergenic 20.0%
!!! AGTGATTTTTTGTTTATAAG+TGG + chr3_4:26880546-26880565 None:intergenic 20.0%
!! TTGCTTATAATAGTGATAAA+AGG - chr3_4:26880606-26880625 Msa0496320:intron 20.0%
!! TGCTTATAATAGTGATAAAA+GGG - chr3_4:26880607-26880626 Msa0496320:intron 20.0%
!! AAATAAGTTAAAACAGCTTA+TGG - chr3_4:26880975-26880994 Msa0496320:intron 20.0%
!!! AATCATTTTTAGAGTTTGTT+GGG - chr3_4:26881378-26881397 Msa0496320:intron 20.0%
!!! AATTTGTTTATTGTTTCAGT+AGG - chr3_4:26881499-26881518 Msa0496320:intron 20.0%
!! ATAAAAACAGTTTATACTTG+AGG + chr3_4:26881968-26881987 None:intergenic 20.0%
!!! ACTGTTTTTATAATAAACGA+TGG - chr3_4:26881977-26881996 Msa0496320:intron 20.0%
!! GTTAGGAATTTATTATATCA+CGG - chr3_4:26883549-26883568 Msa0496320:intron 20.0%
!! ACTTGAATTAACTATAAACA+TGG + chr3_4:26883614-26883633 None:intergenic 20.0%
!!! ACTTACTAAATAGGTTTTTA+TGG - chr3_4:26883743-26883762 Msa0496320:intron 20.0%
!!! CTTACTAAATAGGTTTTTAT+GGG - chr3_4:26883744-26883763 Msa0496320:intron 20.0%
!! GAATACTCATAATCTTTATA+AGG - chr3_4:26883856-26883875 Msa0496320:intron 20.0%
!!! TTTTGATTCTGTTATGAGTT+TGG - chr3_4:26879768-26879787 Msa0496320:CDS 25.0%
! AAAGATTACAAGGGTAAAAT+TGG - chr3_4:26879999-26880018 Msa0496320:intron 25.0%
!!! AATCATTTTTACTGTGAGTT+TGG - chr3_4:26880371-26880390 Msa0496320:intron 25.0%
!!! ATTTTTTGTTTATAAGTGGC+CGG + chr3_4:26880542-26880561 None:intergenic 25.0%
!!! TAAGCAAACAATCACTTTTT+AGG + chr3_4:26880593-26880612 None:intergenic 25.0%
! TATGAAATTACGCTAAAAAC+TGG - chr3_4:26880702-26880721 Msa0496320:intron 25.0%
! GGATTAAGTATAACATAACT+AGG + chr3_4:26881075-26881094 None:intergenic 25.0%
! AATACAAAATCTCCCTTATT+TGG - chr3_4:26881273-26881292 Msa0496320:intron 25.0%
!! ATACAAAATCTCCCTTATTT+GGG - chr3_4:26881274-26881293 Msa0496320:intron 25.0%
! TACTCAAAAATTGTATTGGA+GGG - chr3_4:26881299-26881318 Msa0496320:intron 25.0%
!!! GAATCATTTTTAGAGTTTGT+TGG - chr3_4:26881377-26881396 Msa0496320:intron 25.0%
! TTTATTACTATGACTCTGTT+TGG - chr3_4:26881403-26881422 Msa0496320:intron 25.0%
! TTATTACTATGACTCTGTTT+GGG - chr3_4:26881404-26881423 Msa0496320:intron 25.0%
!!! AATCATTTTTAGAGTGAGTT+GGG - chr3_4:26881675-26881694 Msa0496320:intron 25.0%
!!! TTTTAAAAAAATTGGGGAAG+CGG - chr3_4:26881825-26881844 Msa0496320:intron 25.0%
!!! AGTTAGGATCATTTTTAAGT+TGG - chr3_4:26882192-26882211 Msa0496320:intron 25.0%
! CTGTTTCAAATAAACTATAC+TGG - chr3_4:26882319-26882338 Msa0496320:intron 25.0%
!! GTTAACGTTATAAGTTTGTT+TGG - chr3_4:26882535-26882554 Msa0496320:intron 25.0%
!!! TTAGAATCATTTTTGGAGTT+GGG - chr3_4:26882618-26882637 Msa0496320:intron 25.0%
!!! CAGTTTGACTTTTTTACTAT+AGG + chr3_4:26882733-26882752 None:intergenic 25.0%
! TCAAATAAGTCAATTGAAAC+CGG - chr3_4:26882870-26882889 Msa0496320:intron 25.0%
! GAACAAAGTTGTAACATAAT+TGG + chr3_4:26882970-26882989 None:intergenic 25.0%
!! TTTTTGTGTTTTCAAACTCT+GGG + chr3_4:26883443-26883462 None:intergenic 25.0%
!! ATTTTTGTGTTTTCAAACTC+TGG + chr3_4:26883444-26883463 None:intergenic 25.0%
!! AACTGCAATTTTATATCTTC+TGG - chr3_4:26883467-26883486 Msa0496320:intron 25.0%
!! ACTGCAATTTTATATCTTCT+GGG - chr3_4:26883468-26883487 Msa0496320:intron 25.0%
!! CTTTTACAAGCTAAACTAAT+TGG + chr3_4:26883687-26883706 None:intergenic 25.0%
!! ATAGGTTTTTATGGGTTTAT+TGG - chr3_4:26883752-26883771 Msa0496320:intron 25.0%
! TATGGGTTTATTGGTATTTA+TGG - chr3_4:26883761-26883780 Msa0496320:intron 25.0%
! TGTTTCAACAAAATAATCGT+AGG + chr3_4:26883904-26883923 None:intergenic 25.0%
! AGAAACTAGCAAAAAAAATG+TGG + chr3_4:26884617-26884636 None:intergenic 25.0%
!!! ATTTTTTAAATGAATGCACC+TGG - chr3_4:26884796-26884815 Msa0496320:CDS 25.0%
!!! ATATCTTTGCTTTTATGTCA+TGG - chr3_4:26884863-26884882 Msa0496320:exon 25.0%
!!! TATCTTTGCTTTTATGTCAT+GGG - chr3_4:26884864-26884883 Msa0496320:exon 25.0%
!!! TTTGATTTTAGGATTTGGGT+GGG + chr3_4:26879394-26879413 None:intergenic 30.0%
!!! TTTTGATTTTAGGATTTGGG+TGG + chr3_4:26879395-26879414 None:intergenic 30.0%
!!! GGGTTTTGATTTTAGGATTT+GGG + chr3_4:26879398-26879417 None:intergenic 30.0%
!!! AGGGTTTTGATTTTAGGATT+TGG + chr3_4:26879399-26879418 None:intergenic 30.0%
!! GGATTTGATTTGGAGATTTA+GGG + chr3_4:26879424-26879443 None:intergenic 30.0%
!! AGGATTTGATTTGGAGATTT+AGG + chr3_4:26879425-26879444 None:intergenic 30.0%
TTACTTAGTTATCTCGAGTT+CGG - chr3_4:26879796-26879815 Msa0496320:CDS 30.0%
! TCTATTGAATTTGGAGTGTT+TGG - chr3_4:26879887-26879906 Msa0496320:CDS 30.0%
!! AAAGTGTCTTGCCTTTTTAT+CGG - chr3_4:26880150-26880169 Msa0496320:intron 30.0%
TGCTTATAAAAGTGACTGAA+GGG + chr3_4:26880475-26880494 None:intergenic 30.0%
TTGCTTATAAAAGTGACTGA+AGG + chr3_4:26880476-26880495 None:intergenic 30.0%
ATAAATGATGTATCTCTCTC+CGG - chr3_4:26880520-26880539 Msa0496320:intron 30.0%
TCAATTAAGTCAATCCAAAC+AGG - chr3_4:26880754-26880773 Msa0496320:intron 30.0%
!!! TTGTTTTTATTAGCTGTCCT+TGG - chr3_4:26880942-26880961 Msa0496320:intron 30.0%
!! TGTTTTTATTAGCTGTCCTT+GGG - chr3_4:26880943-26880962 Msa0496320:intron 30.0%
! CTACTAAGATAAGCACTTTT+GGG + chr3_4:26881033-26881052 None:intergenic 30.0%
! TCTACTAAGATAAGCACTTT+TGG + chr3_4:26881034-26881053 None:intergenic 30.0%
GAACTAACTACTAACAAACT+AGG + chr3_4:26881136-26881155 None:intergenic 30.0%
! TTGTTAGTAGTTAGTTCTTC+AGG - chr3_4:26881139-26881158 Msa0496320:intron 30.0%
! TGTTAGTAGTTAGTTCTTCA+GGG - chr3_4:26881140-26881159 Msa0496320:intron 30.0%
TGGAGTAAGTGAAAGAATTT+AGG - chr3_4:26881208-26881227 Msa0496320:intron 30.0%
GGAGTAAGTGAAAGAATTTA+GGG - chr3_4:26881209-26881228 Msa0496320:intron 30.0%
! TACAAAATCTCCCTTATTTG+GGG - chr3_4:26881275-26881294 Msa0496320:intron 30.0%
GTACTCAAAAATTGTATTGG+AGG - chr3_4:26881298-26881317 Msa0496320:intron 30.0%
ACTCAAAAATTGTATTGGAG+GGG - chr3_4:26881300-26881319 Msa0496320:intron 30.0%
GACTGCTTATGCTATTAAAA+AGG - chr3_4:26881441-26881460 Msa0496320:intron 30.0%
!! GCTTATTTTCATAAACACTC+CGG + chr3_4:26881530-26881549 None:intergenic 30.0%
AATAAGCCGAAAACAACTTA+TGG - chr3_4:26881543-26881562 Msa0496320:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG + chr3_4:26881552-26881571 None:intergenic 30.0%
GTCAATTTGTACGAACTTAT+AGG - chr3_4:26881640-26881659 Msa0496320:intron 30.0%
!!! GAATCATTTTTAGAGTGAGT+TGG - chr3_4:26881674-26881693 Msa0496320:intron 30.0%
TGTTAATTAAAGTGCACTAG+TGG - chr3_4:26881855-26881874 Msa0496320:intron 30.0%
GCATCAAGTGATAAATTAGT+GGG + chr3_4:26882090-26882109 None:intergenic 30.0%
AAAGTTGTAACTAAATACCC+TGG + chr3_4:26882160-26882179 None:intergenic 30.0%
! CTTTAGTGTTTGAGATAGTT+AGG - chr3_4:26882176-26882195 Msa0496320:intron 30.0%
AAAAAGCCTTACATGTGTTT+AGG - chr3_4:26882404-26882423 Msa0496320:intron 30.0%
TACTAACCTAAACACATGTA+AGG + chr3_4:26882413-26882432 None:intergenic 30.0%
ATCTGTAACAGCTATTTACA+AGG + chr3_4:26882466-26882485 None:intergenic 30.0%
! AACGTTAACAAACTTGTTCA+TGG + chr3_4:26882524-26882543 None:intergenic 30.0%
! GAGACACTTAGAATCATTTT+TGG - chr3_4:26882611-26882630 Msa0496320:intron 30.0%
!!! CTTAGAATCATTTTTGGAGT+TGG - chr3_4:26882617-26882636 Msa0496320:intron 30.0%
AAGCTTTCTTAGATAGCTTA+TGG - chr3_4:26882769-26882788 Msa0496320:intron 30.0%
GATAAGCTGAAAACAACTTA+TGG - chr3_4:26882793-26882812 Msa0496320:intron 30.0%
CAAATTAGTCAGTTACATCA+CGG - chr3_4:26882989-26883008 Msa0496320:intron 30.0%
AAAGAATCCTCAAAGTTAGT+TGG - chr3_4:26883071-26883090 Msa0496320:intron 30.0%
AAGAATCCTCAAAGTTAGTT+GGG - chr3_4:26883072-26883091 Msa0496320:intron 30.0%
!! TTTGGAAACAACTTGTTAAC+CGG - chr3_4:26883191-26883210 Msa0496320:intron 30.0%
! GTTTTCTTACCTCGTATATA+TGG + chr3_4:26883231-26883250 None:intergenic 30.0%
AGTTCAAAAGCAAGATAATC+CGG + chr3_4:26883330-26883349 None:intergenic 30.0%
! TTTTGTGTTTTCAAACTCTG+GGG + chr3_4:26883442-26883461 None:intergenic 30.0%
! GATTCTGTTGAAAGTTTGTT+AGG - chr3_4:26883532-26883551 Msa0496320:intron 30.0%
! TGGTGTTAACTAACTATAAC+TGG + chr3_4:26883594-26883613 None:intergenic 30.0%
! TTGGTTCCAATTTTGTTAGT+TGG - chr3_4:26883659-26883678 Msa0496320:intron 30.0%
! TGGTTCCAATTTTGTTAGTT+GGG - chr3_4:26883660-26883679 Msa0496320:intron 30.0%
TATAAACAGTTGAGCTACAA+TGG - chr3_4:26883804-26883823 Msa0496320:intron 30.0%
TTCAATTAGCTGTGATACTT+AGG - chr3_4:26883940-26883959 Msa0496320:intron 30.0%
AGAGCAGATAAGTTGTAAAA+AGG + chr3_4:26883981-26884000 None:intergenic 30.0%
ATCTGCTCTTAATCTTATCA+TGG - chr3_4:26883992-26884011 Msa0496320:intron 30.0%
TGTACAAATTAAAAGCTGCT+CGG + chr3_4:26884384-26884403 None:intergenic 30.0%
ACTAGCAAAAAAAATGTGGT+GGG + chr3_4:26884613-26884632 None:intergenic 30.0%
AACTAGCAAAAAAAATGTGG+TGG + chr3_4:26884614-26884633 None:intergenic 30.0%
CTAGTTTGATATTGACAAGA+TGG - chr3_4:26884676-26884695 Msa0496320:CDS 30.0%
!! ATCTTTGCTTTTATGTCATG+GGG - chr3_4:26884865-26884884 Msa0496320:exon 30.0%
TTGTTAATTCAGAGAGAAAG+AGG - chr3_4:26884901-26884920 Msa0496320:five_prime_UTR 30.0%
!!! TTGATTTTAGGATTTGGGTG+GGG + chr3_4:26879393-26879412 None:intergenic 35.0%
!!! AGGGTTAGGGTTTTGATTTT+AGG + chr3_4:26879405-26879424 None:intergenic 35.0%
! GATTTGGAGATTTAGGGTTA+GGG + chr3_4:26879418-26879437 None:intergenic 35.0%
! TGATTTGGAGATTTAGGGTT+AGG + chr3_4:26879419-26879438 None:intergenic 35.0%
TACTTCATCTGGTAATTCTC+TGG + chr3_4:26879530-26879549 None:intergenic 35.0%
GGTAGAGATAATACTTCATC+TGG + chr3_4:26879541-26879560 None:intergenic 35.0%
TACGTTGCTGAAGATTACAA+CGG - chr3_4:26879587-26879606 Msa0496320:three_prime_UTR 35.0%
!! AGCTAGCTTATAGTTGATAG+CGG - chr3_4:26879855-26879874 Msa0496320:CDS 35.0%
ATAAGCCCATGAGAAATTGA+CGG - chr3_4:26880074-26880093 Msa0496320:intron 35.0%
AGAAATTGACGGTTACCAAA+CGG - chr3_4:26880085-26880104 Msa0496320:intron 35.0%
TTGACTAGAAAAGATCCGTT+TGG + chr3_4:26880103-26880122 None:intergenic 35.0%
TGTCTATCAGTCCGATAAAA+AGG + chr3_4:26880164-26880183 None:intergenic 35.0%
CGTAATTTCATAAGATCTGC+AGG + chr3_4:26880694-26880713 None:intergenic 35.0%
TAGTTCTTCAGGGTATGTTT+AGG - chr3_4:26881150-26881169 Msa0496320:intron 35.0%
GTATGTTTAGGAGTTTGGAA+TGG - chr3_4:26881162-26881181 Msa0496320:intron 35.0%
! AGTGAAAGAATTTAGGGCTT+TGG - chr3_4:26881215-26881234 Msa0496320:intron 35.0%
! GTGAAAGAATTTAGGGCTTT+GGG - chr3_4:26881216-26881235 Msa0496320:intron 35.0%
! ACAAAATCTCCCTTATTTGG+GGG - chr3_4:26881276-26881295 Msa0496320:intron 35.0%
!! TTTTGAGTACCCCCAAATAA+GGG + chr3_4:26881288-26881307 None:intergenic 35.0%
!!! TTTTTGAGTACCCCCAAATA+AGG + chr3_4:26881289-26881308 None:intergenic 35.0%
! GGGGTACTCAAAAATTGTAT+TGG - chr3_4:26881295-26881314 Msa0496320:intron 35.0%
CTCAAAAATTGTATTGGAGG+GGG - chr3_4:26881301-26881320 Msa0496320:intron 35.0%
! TTTTCATAAACACTCCGGTA+TGG + chr3_4:26881525-26881544 None:intergenic 35.0%
CTTATTACCTTGATGCTACA+AGG - chr3_4:26881910-26881929 Msa0496320:intron 35.0%
! AGATTAGTTGGACCTATTAG+TGG - chr3_4:26882057-26882076 Msa0496320:intron 35.0%
GGCATCAAGTGATAAATTAG+TGG + chr3_4:26882091-26882110 None:intergenic 35.0%
!! ATGCCTATTTTTCTCATGAG+CGG - chr3_4:26882106-26882125 Msa0496320:intron 35.0%
GCATAAGCACTTAATTAAGC+TGG + chr3_4:26882252-26882271 None:intergenic 35.0%
CCATTACAGATAATTAGTGC+CGG + chr3_4:26882892-26882911 None:intergenic 35.0%
! AAACCTATTCCATAGCGTTT+TGG + chr3_4:26882944-26882963 None:intergenic 35.0%
TTGCGACTATAACTCTGTTA+CGG - chr3_4:26883098-26883117 Msa0496320:intron 35.0%
! ACAAGTTGTTTCCAAACTCT+GGG + chr3_4:26883187-26883206 None:intergenic 35.0%
! AACAAGTTGTTTCCAAACTC+TGG + chr3_4:26883188-26883207 None:intergenic 35.0%
!! TTGGAAACAACTTGTTAACC+GGG - chr3_4:26883192-26883211 Msa0496320:intron 35.0%
CGTATATATGGAGAAACAGT+TGG + chr3_4:26883219-26883238 None:intergenic 35.0%
! ACTGTTTCTCCATATATACG+AGG - chr3_4:26883219-26883238 Msa0496320:intron 35.0%
!!! TTCTGGGTTTTCTAGTCTTA+AGG - chr3_4:26883484-26883503 Msa0496320:intron 35.0%
ATCTGTAAGACTGTAGCTAT+TGG - chr3_4:26883640-26883659 Msa0496320:intron 35.0%
TTGGACCCAACTAACAAAAT+TGG + chr3_4:26883668-26883687 None:intergenic 35.0%
!! GCAGAGTTGATTTTCACTTA+CGG - chr3_4:26884076-26884095 Msa0496320:intron 35.0%
!! CAGAGTTGATTTTCACTTAC+GGG - chr3_4:26884077-26884096 Msa0496320:intron 35.0%
AGTCTAACTGAATCGAAATG+TGG + chr3_4:26884159-26884178 None:intergenic 35.0%
! TAATTTGTACACAGAGACCT+TGG - chr3_4:26884393-26884412 Msa0496320:intron 35.0%
AATTTGTACACAGAGACCTT+GGG - chr3_4:26884394-26884413 Msa0496320:intron 35.0%
TAGCAAAAAAAATGTGGTGG+GGG + chr3_4:26884611-26884630 None:intergenic 35.0%
CTAGCAAAAAAAATGTGGTG+GGG + chr3_4:26884612-26884631 None:intergenic 35.0%
!! ACGTAACAGAGAGCATTATT+CGG + chr3_4:26884712-26884731 None:intergenic 35.0%
CATGTCATGATGCTTGATTA+TGG - chr3_4:26884830-26884849 Msa0496320:CDS 35.0%
TGGGGAAATCGAATGTTGAA+GGG + chr3_4:26879375-26879394 None:intergenic 40.0%
GTGGAGTAGAGGATTTGATT+TGG + chr3_4:26879434-26879453 None:intergenic 40.0%
AATCCTCTACTCCACAACAA+TGG - chr3_4:26879439-26879458 Msa0496320:three_prime_UTR 40.0%
ATCTCTACCACATCCTTTCA+TGG - chr3_4:26879552-26879571 Msa0496320:three_prime_UTR 40.0%
ACGTTGCTGAAGATTACAAC+GGG - chr3_4:26879588-26879607 Msa0496320:three_prime_UTR 40.0%
ATTACAACGGGCGTATTGTT+GGG - chr3_4:26879600-26879619 Msa0496320:three_prime_UTR 40.0%
! TTACTTCTCTTGCTGTGTTG+AGG - chr3_4:26879672-26879691 Msa0496320:three_prime_UTR 40.0%
GGTAACCGTCAATTTCTCAT+GGG + chr3_4:26880082-26880101 None:intergenic 40.0%
TGGTAACCGTCAATTTCTCA+TGG + chr3_4:26880083-26880102 None:intergenic 40.0%
TTTATCGGACTGATAGACAC+AGG - chr3_4:26880165-26880184 Msa0496320:intron 40.0%
TGCTCAGAATGCTATGGAAA+AGG - chr3_4:26880272-26880291 Msa0496320:intron 40.0%
! GAGTTTGGAGTTTGTGACTA+AGG - chr3_4:26880386-26880405 Msa0496320:intron 40.0%
TTTGTGACTAAGGCTCTGTT+TGG - chr3_4:26880396-26880415 Msa0496320:intron 40.0%
ACAGATAGTTACGACCTGTT+TGG + chr3_4:26880771-26880790 None:intergenic 40.0%
CAGGTCGTAACTATCTGTTA+CGG - chr3_4:26880773-26880792 Msa0496320:intron 40.0%
CTTATTTCCATAAGCTCCCA+AGG + chr3_4:26880962-26880981 None:intergenic 40.0%
TAGGAAAGCAACCTATTCCA+TGG + chr3_4:26881117-26881136 None:intergenic 40.0%
TCAGGGTATGTTTAGGAGTT+TGG - chr3_4:26881157-26881176 Msa0496320:intron 40.0%
! TGTTTAGGAGTTTGGAATGG+AGG - chr3_4:26881165-26881184 Msa0496320:intron 40.0%
! GTTTAGGAGTTTGGAATGGA+GGG - chr3_4:26881166-26881185 Msa0496320:intron 40.0%
!!! GAGGGTTTTGGAGAAAAGTA+TGG - chr3_4:26881188-26881207 Msa0496320:intron 40.0%
!! AAAGAATTTAGGGCTTTGGG+TGG - chr3_4:26881219-26881238 Msa0496320:intron 40.0%
! ATTGTATTGGAGGGGGATTT+TGG - chr3_4:26881308-26881327 Msa0496320:intron 40.0%
ATTGTTTCAGTAGGCCATAC+CGG - chr3_4:26881508-26881527 Msa0496320:intron 40.0%
CACTAGTGGCCAATTTAGAA+CGG - chr3_4:26881869-26881888 Msa0496320:intron 40.0%
AGCTTAACCTTGTAGCATCA+AGG + chr3_4:26881920-26881939 None:intergenic 40.0%
CTGTAAATGGAGGTAGATTC+TGG + chr3_4:26882013-26882032 None:intergenic 40.0%
CTTTCTCTCTGGACTGTAAA+TGG + chr3_4:26882026-26882045 None:intergenic 40.0%
TGTCCGCTCATGAGAAAAAT+AGG + chr3_4:26882112-26882131 None:intergenic 40.0%
ATGAGCGGACAGTAGATAAA+TGG - chr3_4:26882121-26882140 Msa0496320:intron 40.0%
GTAACTAAATACCCTGGATC+TGG + chr3_4:26882154-26882173 None:intergenic 40.0%
TTAGTGACTATGACCCTGTT+TGG - chr3_4:26882222-26882241 Msa0496320:intron 40.0%
TAGTGACTATGACCCTGTTT+GGG - chr3_4:26882223-26882242 Msa0496320:intron 40.0%
TTAAGCTGGTTACCCAAACA+GGG + chr3_4:26882238-26882257 None:intergenic 40.0%
ATTAAGCTGGTTACCCAAAC+AGG + chr3_4:26882239-26882258 None:intergenic 40.0%
!!! AGGCTTTTTGAGAGAGCATT+TGG + chr3_4:26882393-26882412 None:intergenic 40.0%
CTTTATGCTGAAGCTCATGA+CGG - chr3_4:26882486-26882505 Msa0496320:intron 40.0%
! CTTGTTCATGGCATTTTGAG+CGG + chr3_4:26882512-26882531 None:intergenic 40.0%
CTTGTGATATAGGCGATGTT+TGG - chr3_4:26882643-26882662 Msa0496320:intron 40.0%
ATGAGCACTTGTATGACTAG+GGG + chr3_4:26882698-26882717 None:intergenic 40.0%
CATGAGCACTTGTATGACTA+GGG + chr3_4:26882699-26882718 None:intergenic 40.0%
ACATGAGCACTTGTATGACT+AGG + chr3_4:26882700-26882719 None:intergenic 40.0%
AGACTGTTTGAGAGAGCTTA+TGG + chr3_4:26882837-26882856 None:intergenic 40.0%
CCGGCACTAATTATCTGTAA+TGG - chr3_4:26882889-26882908 Msa0496320:intron 40.0%
CAAGTACCCAACTAACTTTG+AGG + chr3_4:26883081-26883100 None:intergenic 40.0%
TCTAAAGAGATCCCAGAGTT+TGG - chr3_4:26883173-26883192 Msa0496320:intron 40.0%
! TCTGGTGTTAAAAGTGTGTG+TGG + chr3_4:26883264-26883283 None:intergenic 40.0%
AGAGAATGCCATACTGAATG+AGG - chr3_4:26883356-26883375 Msa0496320:intron 40.0%
TTTAGATGTAGCTTCCATGG+TGG + chr3_4:26883415-26883434 None:intergenic 40.0%
CACTTTAGATGTAGCTTCCA+TGG + chr3_4:26883418-26883437 None:intergenic 40.0%
! TAAGGTACCAGAGTCTTATG+AGG - chr3_4:26883502-26883521 Msa0496320:intron 40.0%
! AAGGTACCAGAGTCTTATGA+GGG - chr3_4:26883503-26883522 Msa0496320:intron 40.0%
TGTGATACTTAGGATGCGTT+TGG - chr3_4:26883950-26883969 Msa0496320:intron 40.0%
! TGATTTTCACTTACGGGAGA+AGG - chr3_4:26884083-26884102 Msa0496320:intron 40.0%
AAGTGCGTGTCTTCTTGTAA+TGG - chr3_4:26884266-26884285 Msa0496320:intron 40.0%
AGTGCGTGTCTTCTTGTAAT+GGG - chr3_4:26884267-26884286 Msa0496320:intron 40.0%
ATTTGTACACAGAGACCTTG+GGG - chr3_4:26884395-26884414 Msa0496320:intron 40.0%
ATCATGAATCTTGTACCCCA+AGG + chr3_4:26884413-26884432 None:intergenic 40.0%
GTACAAGATTCATGATGTGG+AGG - chr3_4:26884417-26884436 Msa0496320:intron 40.0%
! AAAAAAATGTGGTGGGGGTA+GGG + chr3_4:26884606-26884625 None:intergenic 40.0%
! AAAAAAAATGTGGTGGGGGT+AGG + chr3_4:26884607-26884626 None:intergenic 40.0%
TAAATGAATGCACCTGGTTG+TGG - chr3_4:26884802-26884821 Msa0496320:CDS 40.0%
GTGGGGAAATCGAATGTTGA+AGG + chr3_4:26879376-26879395 None:intergenic 45.0%
ACACCATTGTTGTGGAGTAG+AGG + chr3_4:26879445-26879464 None:intergenic 45.0%
TCAGCAACGTAAAGAAGCTG+CGG + chr3_4:26879578-26879597 None:intergenic 45.0%
GATTACAACGGGCGTATTGT+TGG - chr3_4:26879599-26879618 Msa0496320:three_prime_UTR 45.0%
TGGGTATGTTCTTGCGAAGA+TGG - chr3_4:26879619-26879638 Msa0496320:three_prime_UTR 45.0%
GAAGAGACGAATGAGTGTCA+TGG - chr3_4:26879644-26879663 Msa0496320:three_prime_UTR 45.0%
TTGCTGTGTTGAGGACTCAT+CGG - chr3_4:26879681-26879700 Msa0496320:three_prime_UTR 45.0%
TTGAGGACTCATCGGAAGTT+GGG - chr3_4:26879689-26879708 Msa0496320:three_prime_UTR 45.0%
AGAATGCTATGGAGCAGGTT+TGG - chr3_4:26879741-26879760 Msa0496320:CDS 45.0%
AGACACAGGTGGAAGATTGT+AGG - chr3_4:26880179-26880198 Msa0496320:intron 45.0%
TTCTGAGCAGCAGTCATAAG+TGG + chr3_4:26880261-26880280 None:intergenic 45.0%
GGACTGTTTGAGAGAGCTTA+TGG + chr3_4:26881012-26881031 None:intergenic 45.0%
GGCGATTTGAGCATCAGAAT+GGG + chr3_4:26881096-26881115 None:intergenic 45.0%
TGGCGATTTGAGCATCAGAA+TGG + chr3_4:26881097-26881116 None:intergenic 45.0%
TTCTGATGCTCAAATCGCCA+TGG - chr3_4:26881097-26881116 Msa0496320:intron 45.0%
TGCTCAAATCGCCATGGAAT+AGG - chr3_4:26881103-26881122 Msa0496320:intron 45.0%
!! ATTTAGGGCTTTGGGTGGTA+AGG - chr3_4:26881224-26881243 Msa0496320:intron 45.0%
!! TTTAGGGCTTTGGGTGGTAA+GGG - chr3_4:26881225-26881244 Msa0496320:intron 45.0%
TCTGACTATGACGCGTTGTT+TGG - chr3_4:26881702-26881721 Msa0496320:intron 45.0%
TCTCTCTGGACTGTAAATGG+AGG + chr3_4:26882023-26882042 None:intergenic 45.0%
GACACAGGTGGAAGATTAGT+TGG - chr3_4:26882045-26882064 Msa0496320:intron 45.0%
GTGGGACTCATTCCACTAAT+AGG + chr3_4:26882072-26882091 None:intergenic 45.0%
AATGGAGCAATTCCAGATCC+AGG - chr3_4:26882139-26882158 Msa0496320:intron 45.0%
ATGGAGCAATTCCAGATCCA+GGG - chr3_4:26882140-26882159 Msa0496320:intron 45.0%
GAGTTGGGAGCTTGTGATAT+AGG - chr3_4:26882633-26882652 Msa0496320:intron 45.0%
TGAGCACTTGTATGACTAGG+GGG + chr3_4:26882697-26882716 None:intergenic 45.0%
! CCTATTCCATAGCGTTTTGG+CGG + chr3_4:26882941-26882960 None:intergenic 45.0%
TATGGAGAAACAGTTGGACC+CGG + chr3_4:26883213-26883232 None:intergenic 45.0%
! GGTGTTAAAAGTGTGTGTGG+CGG + chr3_4:26883261-26883280 None:intergenic 45.0%
! ACTGGTTTACAAGTTGGGTC+TGG + chr3_4:26883282-26883301 None:intergenic 45.0%
! CGCGAACTGGTTTACAAGTT+GGG + chr3_4:26883287-26883306 None:intergenic 45.0%
! TCGCGAACTGGTTTACAAGT+TGG + chr3_4:26883288-26883307 None:intergenic 45.0%
!!! CCGGTTGTTTTTCACGTATC+CGG + chr3_4:26883311-26883330 None:intergenic 45.0%
CCGGATACGTGAAAAACAAC+CGG - chr3_4:26883308-26883327 Msa0496320:intron 45.0%
TGCCATACTGAATGAGGCAA+AGG - chr3_4:26883362-26883381 Msa0496320:intron 45.0%
AGCCTTTGCCTCATTCAGTA+TGG + chr3_4:26883367-26883386 None:intergenic 45.0%
! TTGTGAGGGTGTGAAATGCA+CGG + chr3_4:26883390-26883409 None:intergenic 45.0%
CTTCCATGGTGGTATTGTGA+GGG + chr3_4:26883404-26883423 None:intergenic 45.0%
! ACCAGAGTCTTATGAGGGTA+AGG - chr3_4:26883508-26883527 Msa0496320:intron 45.0%
ACCTTACCCTCATAAGACTC+TGG + chr3_4:26883512-26883531 None:intergenic 45.0%
TATCATGGCATGAACACCTG+TGG - chr3_4:26884007-26884026 Msa0496320:intron 45.0%
ATGAACACCTGTGGCCATTA+GGG - chr3_4:26884016-26884035 Msa0496320:intron 45.0%
TCCATCTAACTCGTCCCTAA+TGG + chr3_4:26884033-26884052 None:intergenic 45.0%
GTGCGTGTCTTCTTGTAATG+GGG - chr3_4:26884268-26884287 Msa0496320:intron 45.0%
! TGTCTTCTTGTAATGGGGCT+TGG - chr3_4:26884273-26884292 Msa0496320:intron 45.0%
GGGGTACAAGATTCATGATG+TGG - chr3_4:26884414-26884433 Msa0496320:intron 45.0%
CTCACCATCGGCATAATACT+TGG + chr3_4:26884443-26884462 None:intergenic 45.0%
CAAGTATTATGCCGATGGTG+AGG - chr3_4:26884441-26884460 Msa0496320:intron 45.0%
GACATGAGGAAGCAACTCAA+GGG - chr3_4:26884472-26884491 Msa0496320:intron 45.0%
ACATGAGGAAGCAACTCAAG+GGG - chr3_4:26884473-26884492 Msa0496320:intron 45.0%
AGGGGATTGCATACACAATC+AGG + chr3_4:26884587-26884606 None:intergenic 45.0%
! AAAAAATGTGGTGGGGGTAG+GGG + chr3_4:26884605-26884624 None:intergenic 45.0%
TGACATGATGAACCACAACC+AGG + chr3_4:26884817-26884836 None:intergenic 45.0%
!!! ATTTTATTTTAAAAAAATTG+GGG - chr3_4:26881819-26881838 Msa0496320:intron 5.0%
GCGTATGCACACCATTGTTG+TGG + chr3_4:26879453-26879472 None:intergenic 50.0%
CATCGCGAGTAGGTCGTTTA+CGG + chr3_4:26879483-26879502 None:intergenic 50.0%
AAAGAAGCTGCGGCCATGAA+AGG + chr3_4:26879568-26879587 None:intergenic 50.0%
GTTGAGGACTCATCGGAAGT+TGG - chr3_4:26879688-26879707 Msa0496320:three_prime_UTR 50.0%
TGAGGACTCATCGGAAGTTG+GGG - chr3_4:26879690-26879709 Msa0496320:three_prime_UTR 50.0%
TCGAGTTCGGATTTGCATCG+CGG - chr3_4:26879809-26879828 Msa0496320:CDS 50.0%
ATCGGACTGATAGACACAGG+TGG - chr3_4:26880168-26880187 Msa0496320:intron 50.0%
GACTGCTGCTCAGAATGCTA+TGG - chr3_4:26880266-26880285 Msa0496320:intron 50.0%
TAGCTGTCCTTGGGAGCTTA+TGG - chr3_4:26880952-26880971 Msa0496320:intron 50.0%
! TAGGAGTTTGGAATGGAGGG+AGG - chr3_4:26881169-26881188 Msa0496320:intron 50.0%
! AGGAGTTTGGAATGGAGGGA+GGG - chr3_4:26881170-26881189 Msa0496320:intron 50.0%
! TTGGAATGGAGGGAGGGTTT+TGG - chr3_4:26881176-26881195 Msa0496320:intron 50.0%
! TGGCCAATTTAGAACGGCAC+TGG - chr3_4:26881875-26881894 Msa0496320:intron 50.0%
! CCTCCAGTGCCGTTCTAAAT+TGG + chr3_4:26881881-26881900 None:intergenic 50.0%
! CCAATTTAGAACGGCACTGG+AGG - chr3_4:26881878-26881897 Msa0496320:intron 50.0%
CAGTCCAGAGAGAAAGACAC+AGG - chr3_4:26882030-26882049 Msa0496320:intron 50.0%
TCCAGAGAGAAAGACACAGG+TGG - chr3_4:26882033-26882052 Msa0496320:intron 50.0%
TCCACCTGTGTCTTTCTCTC+TGG + chr3_4:26882037-26882056 None:intergenic 50.0%
CCGCCAAAACGCTATGGAAT+AGG - chr3_4:26882938-26882957 Msa0496320:intron 50.0%
! AAAGTGTGTGTGGCGGAACA+GGG + chr3_4:26883254-26883273 None:intergenic 50.0%
! AAAAGTGTGTGTGGCGGAAC+AGG + chr3_4:26883255-26883274 None:intergenic 50.0%
CTTGTAAACCAGTTCGCGAC+CGG - chr3_4:26883289-26883308 Msa0496320:intron 50.0%
ACACCCTCACAATACCACCA+TGG - chr3_4:26883398-26883417 Msa0496320:intron 50.0%
GCTTCCATGGTGGTATTGTG+AGG + chr3_4:26883405-26883424 None:intergenic 50.0%
CATGAACACCTGTGGCCATT+AGG - chr3_4:26884015-26884034 Msa0496320:intron 50.0%
GCCATTAGGGACGAGTTAGA+TGG - chr3_4:26884029-26884048 Msa0496320:intron 50.0%
ACCTGTGTCAGACAGGGTAA+CGG + chr3_4:26884319-26884338 None:intergenic 50.0%
CCAAACACCTGTGTCAGACA+GGG + chr3_4:26884325-26884344 None:intergenic 50.0%
ACCAAACACCTGTGTCAGAC+AGG + chr3_4:26884326-26884345 None:intergenic 50.0%
GAGGCCAAGTATTATGCCGA+TGG - chr3_4:26884436-26884455 Msa0496320:intron 50.0%
GTCGTAAGCATCCTCACCAT+CGG + chr3_4:26884455-26884474 None:intergenic 50.0%
GTGAGGATGCTTACGACATG+AGG - chr3_4:26884458-26884477 Msa0496320:intron 50.0%
CGACATGAGGAAGCAACTCA+AGG - chr3_4:26884471-26884490 Msa0496320:intron 50.0%
ATGGCGGTGGATGTTGTTCT+GGG - chr3_4:26884539-26884558 Msa0496320:intron 50.0%
!! ATGTTGTTCTGGGGAGACCA+AGG - chr3_4:26884549-26884568 Msa0496320:intron 50.0%
!! TGTTGTTCTGGGGAGACCAA+GGG - chr3_4:26884550-26884569 Msa0496320:intron 50.0%
! TCAGGCTTTAGCATTCCCCT+TGG + chr3_4:26884569-26884588 None:intergenic 50.0%
GACTGCTGCGCAGAATGCTA+TGG - chr3_4:26879730-26879749 Msa0496320:exon 55.0%
TGCGCAGAATGCTATGGAGC+AGG - chr3_4:26879736-26879755 Msa0496320:CDS 55.0%
CTTTGGGTGGTAAGGGCTCT+GGG - chr3_4:26881232-26881251 Msa0496320:intron 55.0%
TTTGGGTGGTAAGGGCTCTG+GGG - chr3_4:26881233-26881252 Msa0496320:intron 55.0%
TGGTTGCCGCCAAAACGCTA+TGG - chr3_4:26882932-26882951 Msa0496320:intron 55.0%
! AAGTGTGTGTGGCGGAACAG+GGG + chr3_4:26883253-26883272 None:intergenic 55.0%
AACTCGTCCCTAATGGCCAC+AGG + chr3_4:26884026-26884045 None:intergenic 55.0%
ACCGTTACCCTGTCTGACAC+AGG - chr3_4:26884315-26884334 Msa0496320:intron 55.0%
CCCTGTCTGACACAGGTGTT+TGG - chr3_4:26884322-26884341 Msa0496320:intron 55.0%
! TGGTGGTGATGATGCTGTGG+TGG + chr3_4:26884511-26884530 None:intergenic 55.0%
!! TGGTGGTGGTGATGATGCTG+TGG + chr3_4:26884514-26884533 None:intergenic 55.0%
AACAACATCCACCGCCATGG+TGG + chr3_4:26884537-26884556 None:intergenic 55.0%
CAGAACAACATCCACCGCCA+TGG + chr3_4:26884540-26884559 None:intergenic 55.0%
CATGGCGGTGGATGTTGTTC+TGG - chr3_4:26884538-26884557 Msa0496320:intron 55.0%
TGGCGGTGGATGTTGTTCTG+GGG - chr3_4:26884540-26884559 Msa0496320:intron 55.0%
!! GTTGTTCTGGGGAGACCAAG+GGG - chr3_4:26884551-26884570 Msa0496320:intron 55.0%
TGCACGCTTGCATCGCGAGT+AGG + chr3_4:26879493-26879512 None:intergenic 60.0%
GCTGCGGCCATGAAAGGATG+TGG + chr3_4:26879562-26879581 None:intergenic 60.0%
! GCTTTGGGTGGTAAGGGCTC+TGG - chr3_4:26881231-26881250 Msa0496320:intron 60.0%
TCACGTATCCGGTCGCGAAC+TGG + chr3_4:26883300-26883319 None:intergenic 60.0%
CATCACCACCACCACCACCA+TGG - chr3_4:26884520-26884539 Msa0496320:intron 60.0%
AACATCCACCGCCATGGTGG+TGG + chr3_4:26884534-26884553 None:intergenic 60.0%
CACCACCACCACCACCATGG+CGG - chr3_4:26884523-26884542 Msa0496320:intron 65.0%
!! ATCCACCGCCATGGTGGTGG+TGG + chr3_4:26884531-26884550 None:intergenic 65.0%
!! CACCGCCATGGTGGTGGTGG+TGG + chr3_4:26884528-26884547 None:intergenic 70.0%
CACCACCACCACCATGGCGG+TGG - chr3_4:26884526-26884545 Msa0496320:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 26879353 26884971 26879353 ID=Msa0496320;Name=Msa0496320
chr3_4 mRNA 26879353 26884971 26879353 ID=Msa0496320-mRNA-1;Parent=Msa0496320;Name=Msa0496320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|1|1|1|1|2|383|183
chr3_4 exon 26879353 26879987 26879353 ID=Msa0496320-mRNA-1:exon:6407;Parent=Msa0496320-mRNA-1
chr3_4 exon 26884567 26884971 26884567 ID=Msa0496320-mRNA-1:exon:6406;Parent=Msa0496320-mRNA-1
chr3_4 five_prime_UTR 26884867 26884971 26884867 ID=Msa0496320-mRNA-1:five_prime_utr;Parent=Msa0496320-mRNA-1
chr3_4 CDS 26884567 26884866 26884567 ID=Msa0496320-mRNA-1:cds;Parent=Msa0496320-mRNA-1
chr3_4 CDS 26879736 26879987 26879736 ID=Msa0496320-mRNA-1:cds;Parent=Msa0496320-mRNA-1
chr3_4 three_prime_UTR 26879353 26879735 26879353 ID=Msa0496320-mRNA-1:three_prime_utr;Parent=Msa0496320-mRNA-1
Gene Sequence

>Msa0496320

ATGGTGTGCATACGCAAAGCAACCGTAAACGACCTACTCGCGATGCAAGCGTGCAATCTCTTCTGCTTACCAGAGAATTACCAGATGAAGTATTATCTCTACCACATCCTTTCATGGCCGCAGCTTCTTTACGTTGCTGAAGATTACAACGGGCGTATTGTTGGGTATGTTCTTGCGAAGATGGAAGAAGAGACGAATGAGTGTCATGGTCATATTACTTCTCTTGCTGTGTTGAGGACTCATCGGAAGTTGGGGATTGCTACTAAGCTTATGACTGCTGCGCAGAATGCTATGGAGCAGGTGTTTGGTGCTGAGTACGTGTCGCTGCACGTCAGGAAGAGCAACCGAGCAGCTTTTAATTTGTACACAGAGACCTTGGGGTACAAGATTCATGATGTGGAGGCCAAGTATTATGCCGATGGTGAGGATGCTTACGACATGAGGAAGCAACTCAAGGGGAAGACGATACATCCACCACAGCATCATCACCACCACCACCACCATGGCGGTGGATGTTGTTCTGGGGAGACCAAGGGGAATGCTAAAGCCTGA
Protein sequence

>Msa0496320

MVCIRKATVNDLLAMQACNLFCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETNECHGHITSLAVLRTHRKLGIATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQLKGKTIHPPQHHHHHHHHGGGCCSGETKGNAKA*