Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496880 | XP_039682994.1 | 92.593 | 324 | 23 | 1 | 1 | 323 | 1 | 324 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496880 | sp|Q9SZL8|FRS5_ARATH | 29.932 | 294 | 179 | 6 | 34 | 322 | 72 | 343 | 4.25e-35 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496880 | A0A072TE13 | 91.554 | 296 | 24 | 1 | 1 | 295 | 1 | 296 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0496880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496880 | MtrunA17_Chr1g0172971 | 84.615 | 117 | 17 | 1 | 1 | 116 | 1 | 117 | 1.85e-62 | 207 |
| Msa0496880 | MtrunA17_Chr7g0258861 | 33.221 | 298 | 175 | 6 | 30 | 322 | 2 | 280 | 3.21e-49 | 166 |
| Msa0496880 | MtrunA17_Chr2g0324011 | 31.864 | 295 | 178 | 4 | 31 | 322 | 3 | 277 | 1.39e-43 | 157 |
| Msa0496880 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 1.15e-42 | 142 |
| Msa0496880 | MtrunA17_Chr3g0082121 | 32.624 | 282 | 163 | 6 | 41 | 322 | 49 | 303 | 2.19e-41 | 152 |
| Msa0496880 | MtrunA17_Chr1g0202341 | 29.655 | 290 | 184 | 5 | 34 | 323 | 50 | 319 | 6.92e-37 | 140 |
| Msa0496880 | MtrunA17_Chr5g0448761 | 29.795 | 292 | 186 | 5 | 34 | 322 | 59 | 334 | 1.01e-35 | 137 |
| Msa0496880 | MtrunA17_Chr1g0164591 | 34.896 | 192 | 116 | 2 | 131 | 322 | 1 | 183 | 1.78e-35 | 130 |
| Msa0496880 | MtrunA17_Chr1g0203721 | 26.531 | 343 | 208 | 8 | 1 | 323 | 16 | 334 | 8.20e-34 | 131 |
| Msa0496880 | MtrunA17_Chr8g0363841 | 29.348 | 276 | 172 | 7 | 49 | 322 | 31 | 285 | 1.11e-31 | 125 |
| Msa0496880 | MtrunA17_Chr6g0458391 | 28.369 | 282 | 165 | 5 | 41 | 322 | 231 | 475 | 1.86e-31 | 124 |
| Msa0496880 | MtrunA17_Chr2g0296781 | 28.374 | 289 | 173 | 6 | 39 | 322 | 1 | 260 | 1.31e-29 | 119 |
| Msa0496880 | MtrunA17_Chr5g0441581 | 27.000 | 300 | 183 | 8 | 23 | 322 | 25 | 288 | 1.21e-26 | 110 |
| Msa0496880 | MtrunA17_Chr2g0287651 | 27.698 | 278 | 176 | 6 | 49 | 322 | 89 | 345 | 5.02e-26 | 108 |
| Msa0496880 | MtrunA17_Chr2g0291591 | 28.283 | 297 | 167 | 9 | 37 | 322 | 66 | 327 | 9.67e-25 | 104 |
| Msa0496880 | MtrunA17_Chr6g0477261 | 35.664 | 143 | 92 | 0 | 180 | 322 | 7 | 149 | 2.42e-24 | 103 |
| Msa0496880 | MtrunA17_Chr2g0329031 | 27.331 | 311 | 184 | 10 | 15 | 322 | 1 | 272 | 1.16e-22 | 98.6 |
| Msa0496880 | MtrunA17_Chr5g0431001 | 26.712 | 292 | 189 | 8 | 40 | 323 | 66 | 340 | 4.40e-22 | 96.7 |
| Msa0496880 | MtrunA17_Chr1g0203051 | 24.453 | 274 | 186 | 4 | 50 | 322 | 94 | 347 | 4.52e-22 | 97.1 |
| Msa0496880 | MtrunA17_Chr1g0198761 | 26.962 | 293 | 185 | 9 | 40 | 322 | 52 | 325 | 1.13e-20 | 92.8 |
| Msa0496880 | MtrunA17_Chr5g0440451 | 24.183 | 306 | 183 | 8 | 34 | 322 | 42 | 315 | 1.94e-20 | 92.0 |
| Msa0496880 | MtrunA17_Chr1g0207551 | 26.408 | 284 | 183 | 7 | 41 | 322 | 40 | 299 | 4.86e-19 | 87.8 |
| Msa0496880 | MtrunA17_Chr1g0196541 | 24.306 | 288 | 188 | 7 | 39 | 322 | 1 | 262 | 1.12e-18 | 87.0 |
| Msa0496880 | MtrunA17_Chr2g0290391 | 24.749 | 299 | 189 | 8 | 39 | 322 | 55 | 332 | 1.27e-18 | 86.7 |
| Msa0496880 | MtrunA17_Chr2g0276841 | 23.929 | 280 | 187 | 8 | 49 | 322 | 84 | 343 | 1.40e-18 | 86.7 |
| Msa0496880 | MtrunA17_Chr2g0294841 | 26.207 | 290 | 187 | 8 | 41 | 322 | 51 | 321 | 1.42e-17 | 83.6 |
| Msa0496880 | MtrunA17_Chr2g0287061 | 25.000 | 284 | 154 | 7 | 41 | 322 | 189 | 415 | 1.86e-17 | 83.2 |
| Msa0496880 | MtrunA17_Chr5g0448511 | 35.514 | 107 | 68 | 1 | 216 | 322 | 1 | 106 | 2.79e-17 | 82.4 |
| Msa0496880 | MtrunA17_Chr3g0118611 | 37.255 | 102 | 64 | 0 | 221 | 322 | 111 | 212 | 4.13e-17 | 82.0 |
| Msa0496880 | MtrunA17_Chr2g0291581 | 24.211 | 285 | 182 | 4 | 38 | 322 | 74 | 324 | 5.57e-16 | 78.6 |
| Msa0496880 | MtrunA17_Chr3g0080351 | 24.150 | 294 | 189 | 7 | 31 | 322 | 72 | 333 | 1.74e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496880 | AT4G38180.1 | 29.932 | 294 | 179 | 6 | 34 | 322 | 72 | 343 | 4.32e-36 | 138 |
| Msa0496880 | AT5G28530.3 | 26.102 | 295 | 188 | 7 | 40 | 322 | 60 | 336 | 2.11e-22 | 98.2 |
| Msa0496880 | AT5G28530.2 | 26.102 | 295 | 188 | 7 | 40 | 322 | 60 | 336 | 2.11e-22 | 98.2 |
| Msa0496880 | AT5G28530.1 | 26.102 | 295 | 188 | 7 | 40 | 322 | 60 | 336 | 2.19e-22 | 98.2 |
| Msa0496880 | AT3G06250.2 | 24.922 | 321 | 177 | 7 | 5 | 322 | 160 | 419 | 7.67e-22 | 96.7 |
| Msa0496880 | AT3G06250.1 | 24.922 | 321 | 177 | 7 | 5 | 322 | 160 | 419 | 7.67e-22 | 96.7 |
| Msa0496880 | AT3G06250.3 | 24.922 | 321 | 177 | 7 | 5 | 322 | 160 | 419 | 7.67e-22 | 96.7 |
| Msa0496880 | AT2G27110.2 | 33.636 | 110 | 73 | 0 | 213 | 322 | 181 | 290 | 3.25e-19 | 89.0 |
| Msa0496880 | AT2G27110.1 | 33.636 | 110 | 73 | 0 | 213 | 322 | 181 | 290 | 3.25e-19 | 89.0 |
| Msa0496880 | AT2G27110.3 | 33.636 | 110 | 73 | 0 | 213 | 322 | 36 | 145 | 5.20e-19 | 88.2 |
| Msa0496880 | AT4G15090.1 | 26.909 | 275 | 178 | 8 | 50 | 322 | 66 | 319 | 3.97e-18 | 85.9 |
| Msa0496880 | AT4G15090.5 | 26.909 | 275 | 178 | 8 | 50 | 322 | 66 | 319 | 3.97e-18 | 85.9 |
| Msa0496880 | AT4G15090.3 | 26.909 | 275 | 178 | 8 | 50 | 322 | 66 | 319 | 3.97e-18 | 85.9 |
| Msa0496880 | AT4G15090.2 | 26.909 | 275 | 178 | 8 | 50 | 322 | 66 | 319 | 3.97e-18 | 85.9 |
| Msa0496880 | AT4G15090.4 | 26.909 | 275 | 178 | 8 | 50 | 322 | 66 | 319 | 3.97e-18 | 85.9 |
| Msa0496880 | AT1G76320.3 | 25.524 | 286 | 177 | 8 | 41 | 322 | 3 | 256 | 4.36e-18 | 85.5 |
| Msa0496880 | AT1G76320.2 | 25.524 | 286 | 177 | 8 | 41 | 322 | 3 | 256 | 4.58e-18 | 85.5 |
| Msa0496880 | AT1G76320.1 | 25.524 | 286 | 177 | 8 | 41 | 322 | 3 | 256 | 4.80e-18 | 85.5 |
| Msa0496880 | AT1G76320.4 | 25.524 | 286 | 177 | 8 | 41 | 322 | 3 | 256 | 4.80e-18 | 85.5 |
| Msa0496880 | AT2G32250.2 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 4.31e-17 | 82.4 |
| Msa0496880 | AT2G32250.4 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 4.31e-17 | 82.4 |
| Msa0496880 | AT2G32250.6 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 4.77e-17 | 82.4 |
| Msa0496880 | AT2G32250.1 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 4.77e-17 | 82.4 |
| Msa0496880 | AT2G32250.3 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 4.77e-17 | 82.4 |
| Msa0496880 | AT5G18960.2 | 23.397 | 312 | 174 | 9 | 16 | 322 | 192 | 443 | 5.00e-17 | 82.4 |
| Msa0496880 | AT5G18960.1 | 23.397 | 312 | 174 | 9 | 16 | 322 | 192 | 443 | 5.00e-17 | 82.4 |
| Msa0496880 | AT2G32250.5 | 26.235 | 324 | 169 | 11 | 1 | 322 | 8 | 263 | 5.16e-17 | 82.4 |
| Msa0496880 | AT1G80010.1 | 27.241 | 290 | 178 | 10 | 41 | 322 | 101 | 365 | 5.34e-17 | 82.4 |
| Msa0496880 | AT2G32250.7 | 26.056 | 284 | 144 | 8 | 41 | 322 | 3 | 222 | 4.01e-16 | 79.7 |
| Msa0496880 | AT2G32250.8 | 26.056 | 284 | 144 | 8 | 41 | 322 | 3 | 222 | 4.04e-16 | 79.7 |
| Msa0496880 | AT1G10240.2 | 23.162 | 272 | 189 | 7 | 49 | 317 | 62 | 316 | 4.17e-16 | 79.3 |
| Msa0496880 | AT1G10240.1 | 23.162 | 272 | 189 | 7 | 49 | 317 | 62 | 316 | 4.17e-16 | 79.3 |
| Msa0496880 | AT4G38170.1 | 40.449 | 89 | 48 | 2 | 235 | 322 | 24 | 108 | 5.80e-16 | 79.0 |
| Msa0496880 | AT3G22170.2 | 22.973 | 296 | 189 | 7 | 32 | 322 | 67 | 328 | 1.47e-14 | 75.1 |
| Msa0496880 | AT3G22170.1 | 22.973 | 296 | 189 | 7 | 32 | 322 | 67 | 328 | 1.47e-14 | 75.1 |
| Msa0496880 | AT1G52520.1 | 24.126 | 286 | 178 | 6 | 41 | 322 | 91 | 341 | 2.54e-14 | 74.3 |
| Msa0496880 | AT4G19990.7 | 23.194 | 263 | 160 | 7 | 41 | 303 | 41 | 261 | 1.64e-11 | 65.5 |
| Msa0496880 | AT4G19990.3 | 23.194 | 263 | 160 | 7 | 41 | 303 | 27 | 247 | 1.85e-11 | 65.5 |
| Msa0496880 | AT4G19990.4 | 23.194 | 263 | 160 | 7 | 41 | 303 | 27 | 247 | 1.85e-11 | 65.5 |
| Msa0496880 | AT4G19990.5 | 23.194 | 263 | 160 | 7 | 41 | 303 | 27 | 247 | 1.90e-11 | 65.5 |
| Msa0496880 | AT4G19990.1 | 32.941 | 85 | 57 | 0 | 219 | 303 | 106 | 190 | 2.02e-11 | 65.5 |
| Msa0496880 | AT4G19990.6 | 33.333 | 84 | 56 | 0 | 220 | 303 | 164 | 247 | 2.14e-11 | 65.5 |
| Msa0496880 | AT4G19990.2 | 33.333 | 84 | 56 | 0 | 220 | 303 | 164 | 247 | 2.14e-11 | 65.5 |
Find 116 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTCAAATGTTGATGTTT+TGG | 0.176389 | 3_4:-28627392 | Msa0496880:three_prime_UTR |
| TATCATTTGTGGTTTCTTAT+TGG | 0.180478 | 3_4:+28628100 | None:intergenic |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 3_4:-28628227 | Msa0496880:intron |
| CTTTAGTGATTTCAACATTA+TGG | 0.205079 | 3_4:-28627679 | Msa0496880:three_prime_UTR |
| ATGTCGTATGTTTGAGAATC+AGG | 0.277904 | 3_4:-28627266 | Msa0496880:three_prime_UTR |
| TCTGATGTTGGCTTGTTGTT+AGG | 0.291501 | 3_4:+28629201 | None:intergenic |
| ACAGTTGGAGTAAGAATGTT+AGG | 0.295506 | 3_4:-28629740 | Msa0496880:five_prime_UTR |
| ATAACACTGGATTCTCTATT+AGG | 0.309117 | 3_4:-28629332 | Msa0496880:CDS |
| AATCATATTTCGACTACAAT+TGG | 0.315875 | 3_4:-28627905 | Msa0496880:three_prime_UTR |
| CTTCAATTTACCATATCTAA+TGG | 0.334833 | 3_4:-28629556 | Msa0496880:five_prime_UTR |
| GAAGGCCTACTTCGGACTTT+AGG | 0.341988 | 3_4:-28627854 | Msa0496880:three_prime_UTR |
| GTCTTTAATGCCAACATTCA+TGG | 0.342761 | 3_4:+28627098 | None:intergenic |
| TGTTCTTAAAGCAGGGAAAA+AGG | 0.351924 | 3_4:-28626974 | Msa0496880:three_prime_UTR |
| TTGCTGTCTGTGAACCATCT+AGG | 0.367158 | 3_4:-28626876 | None:intergenic |
| GAGAATGTCTTATGAAGTTA+TGG | 0.371697 | 3_4:-28628935 | Msa0496880:CDS |
| TCGACAAGTTTACAAGATCT+TGG | 0.379430 | 3_4:-28627232 | Msa0496880:three_prime_UTR |
| GGCGATATAGATTGTTTGTT+CGG | 0.383706 | 3_4:+28628644 | None:intergenic |
| TAGGAGTTTCTTCTTTCTAA+AGG | 0.397018 | 3_4:-28626949 | Msa0496880:three_prime_UTR |
| TCATGCTGAGTTGGACTTCA+AGG | 0.402098 | 3_4:-28627637 | Msa0496880:three_prime_UTR |
| GTTTCAATTTATCATATGTA+AGG | 0.409677 | 3_4:-28629589 | Msa0496880:five_prime_UTR |
| TACAAGATCTTGGAGGTCTT+AGG | 0.411395 | 3_4:-28627222 | Msa0496880:three_prime_UTR |
| TGGTCTGTATATATCATTTG+TGG | 0.411689 | 3_4:+28628089 | None:intergenic |
| GTACAAAATACTAACCTAAT+GGG | 0.422907 | 3_4:+28628623 | None:intergenic |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 3_4:-28629080 | Msa0496880:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3_4:-28628922 | Msa0496880:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_4:-28628997 | Msa0496880:CDS |
| TCAGTTGTAACAATTTGATA+AGG | 0.430835 | 3_4:-28629630 | Msa0496880:five_prime_UTR |
| CTCGACGGTGTTCTTAAAGC+AGG | 0.431598 | 3_4:-28626982 | Msa0496880:three_prime_UTR |
| GATCTTCAAACCTTGGGAAA+AGG | 0.436347 | 3_4:+28627350 | None:intergenic |
| TACACGTGTTTGCGCAGATC+CGG | 0.442827 | 3_4:-28627022 | Msa0496880:three_prime_UTR |
| TATCAAATTTGTTGATGTAA+AGG | 0.442906 | 3_4:-28629665 | Msa0496880:five_prime_UTR |
| CGATCATGATCTTCAAACCT+TGG | 0.443630 | 3_4:+28627343 | None:intergenic |
| ACAAAATATGAAATCGGATA+AGG | 0.448270 | 3_4:-28629283 | Msa0496880:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 3_4:-28627805 | Msa0496880:three_prime_UTR |
| AACAATCTATATCGCCCATT+AGG | 0.454471 | 3_4:-28628637 | Msa0496880:intron |
| TCCATGATTCTTCATTGCTA+GGG | 0.459212 | 3_4:+28629412 | None:intergenic |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460988 | 3_4:-28627539 | Msa0496880:three_prime_UTR |
| GCTTTAATAAATTCTAAAGC+TGG | 0.465202 | 3_4:-28628967 | Msa0496880:CDS |
| CAATTCACAAAATATGAAAT+CGG | 0.467278 | 3_4:-28629289 | Msa0496880:CDS |
| TGGGCTTTGCTCATGGCACA+TGG | 0.468555 | 3_4:-28628015 | Msa0496880:three_prime_UTR |
| TTCCATGATTCTTCATTGCT+AGG | 0.469455 | 3_4:+28629411 | None:intergenic |
| ATCATATTTCGACTACAATT+GGG | 0.470752 | 3_4:-28627904 | Msa0496880:three_prime_UTR |
| CCCAAAACATCAACATTTGA+AGG | 0.473710 | 3_4:+28627391 | None:intergenic |
| CGCTTTAAAACATATTATCC+AGG | 0.474206 | 3_4:+28627165 | None:intergenic |
| TTTACAACCAACCCTTTCCT+CGG | 0.474822 | 3_4:+28629137 | None:intergenic |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 3_4:-28627806 | Msa0496880:three_prime_UTR |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3_4:-28628854 | Msa0496880:CDS |
| TTACTTCTCGAAATGATCTC+AGG | 0.488412 | 3_4:+28629010 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_4:-28627499 | Msa0496880:three_prime_UTR |
| GACCGCATAAGCTGACTGTT+GGG | 0.491120 | 3_4:+28627585 | None:intergenic |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3_4:+28628214 | None:intergenic |
| CCCCTAGCAATGAAGAATCA+TGG | 0.491418 | 3_4:-28629413 | Msa0496880:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.491567 | 3_4:-28629132 | Msa0496880:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 3_4:-28628841 | Msa0496880:CDS |
| TTAGAAGGCGTAACAGAAGA+TGG | 0.494394 | 3_4:+28626913 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 3_4:-28629249 | Msa0496880:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 3_4:+28629027 | None:intergenic |
| AACATTCAAATACTATTATG+AGG | 0.499736 | 3_4:-28627515 | Msa0496880:three_prime_UTR |
| TGTCTTCAGCAGCATCAACT+TGG | 0.506628 | 3_4:+28628749 | None:intergenic |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 3_4:+28628883 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_4:-28629238 | Msa0496880:CDS |
| GATCATGATCTTCAAACCTT+GGG | 0.513046 | 3_4:+28627344 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 3_4:+28629039 | None:intergenic |
| AGAATGTCTTATGAAGTTAT+GGG | 0.514493 | 3_4:-28628934 | Msa0496880:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.517187 | 3_4:-28627646 | Msa0496880:three_prime_UTR |
| TAAAGAATCGAACAAGTGAA+TGG | 0.522057 | 3_4:+28627697 | None:intergenic |
| TCATGATCGACTTGATGAAA+GGG | 0.522852 | 3_4:-28627329 | Msa0496880:three_prime_UTR |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_4:-28629345 | Msa0496880:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 3_4:-28629079 | Msa0496880:CDS |
| GAATCATTGCAAATTACAGT+TGG | 0.523682 | 3_4:-28629755 | Msa0496880:five_prime_UTR |
| TTCACAAACTCAATAACCAC+TGG | 0.524950 | 3_4:+28629174 | None:intergenic |
| GGCCTACTTCGGACTTTAGG+TGG | 0.525000 | 3_4:-28627851 | Msa0496880:three_prime_UTR |
| CTGAAATCTACCATGAATGT+TGG | 0.527337 | 3_4:-28627108 | Msa0496880:three_prime_UTR |
| ATCATGATCGACTTGATGAA+AGG | 0.531340 | 3_4:-28627330 | Msa0496880:three_prime_UTR |
| TGTCGTATGTTTGAGAATCA+GGG | 0.534089 | 3_4:-28627265 | Msa0496880:three_prime_UTR |
| GATTTCAGCTTATCGACAAA+CGG | 0.535702 | 3_4:+28627123 | None:intergenic |
| CAGTTGGAGTAAGAATGTTA+GGG | 0.538770 | 3_4:-28629739 | Msa0496880:five_prime_UTR |
| TTACAACCAACCCTTTCCTC+GGG | 0.540447 | 3_4:+28629138 | None:intergenic |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_4:+28627702 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_4:-28627498 | Msa0496880:three_prime_UTR |
| TAAGATATATAGATGGGAAG+TGG | 0.551693 | 3_4:-28629073 | Msa0496880:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_4:-28629237 | Msa0496880:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.555496 | 3_4:+28627584 | None:intergenic |
| TCGACGGTGTTCTTAAAGCA+GGG | 0.562229 | 3_4:-28626981 | Msa0496880:three_prime_UTR |
| CTCACGAAAATCGTATGCAT+TGG | 0.562895 | 3_4:-28627818 | Msa0496880:three_prime_UTR |
| AACAAATTTGATATACTACT+AGG | 0.566134 | 3_4:+28629675 | None:intergenic |
| CCATGATTCTTCATTGCTAG+GGG | 0.566277 | 3_4:+28629413 | None:intergenic |
| ACTTCAACAACACACTAGCC+TGG | 0.568885 | 3_4:+28628069 | None:intergenic |
| ACATTATGGTTCAGACAATG+AGG | 0.573252 | 3_4:-28627665 | Msa0496880:three_prime_UTR |
| TCTTATGAAGTTATGGGTCA+AGG | 0.577681 | 3_4:-28628928 | Msa0496880:CDS |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_4:-28628919 | Msa0496880:CDS |
| ACAAGTTTACAAGATCTTGG+AGG | 0.587827 | 3_4:-28627229 | Msa0496880:three_prime_UTR |
| ACCACTGGACTGTCTGATGT+TGG | 0.589854 | 3_4:+28629189 | None:intergenic |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 3_4:+28627543 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3_4:-28628848 | Msa0496880:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 3_4:-28628845 | Msa0496880:CDS |
| TCGATATCGTTGTGCTTGAG+TGG | 0.603760 | 3_4:+28627074 | None:intergenic |
| TAGAAGGCGTAACAGAAGAT+GGG | 0.604978 | 3_4:+28626914 | None:intergenic |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3_4:-28627587 | Msa0496880:three_prime_UTR |
| GATGTTGATAATGATAATGA+CGG | 0.610589 | 3_4:-28627415 | Msa0496880:three_prime_UTR |
| GTCGTATGTTTGAGAATCAG+GGG | 0.612504 | 3_4:-28627264 | Msa0496880:three_prime_UTR |
| ACGTGTTTGCGCAGATCCGG+AGG | 0.624069 | 3_4:-28627019 | Msa0496880:three_prime_UTR |
| AGCCACCTAAAGTCCGAAGT+AGG | 0.628619 | 3_4:+28627849 | None:intergenic |
| GGGCTTTGCTCATGGCACAT+GGG | 0.630780 | 3_4:-28628014 | Msa0496880:three_prime_UTR |
| TGAAACTTCACTGATTCATG+CGG | 0.634204 | 3_4:-28629454 | Msa0496880:CDS |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3_4:-28628914 | Msa0496880:CDS |
| ATGTTGATAATGATAATGAC+GGG | 0.637513 | 3_4:-28627414 | Msa0496880:three_prime_UTR |
| AAGATCTTGGAGGTCTTAGG+CGG | 0.644066 | 3_4:-28627219 | Msa0496880:three_prime_UTR |
| CATTATGGTTCAGACAATGA+GGG | 0.650096 | 3_4:-28627664 | Msa0496880:three_prime_UTR |
| ATATCAAAGTCATCTGAGAG+TGG | 0.651777 | 3_4:-28629489 | Msa0496880:CDS |
| GGGTTGTCACAGTTGACATG+AGG | 0.658305 | 3_4:-28627309 | Msa0496880:three_prime_UTR |
| TGGTGTGTACTTGTTTACAA+CGG | 0.684217 | 3_4:+28627563 | None:intergenic |
| ATTCAAATACTATTATGAGG+AGG | 0.687697 | 3_4:-28627512 | Msa0496880:three_prime_UTR |
| AAACAATCAATCGAAAGTAG+CGG | 0.692732 | 3_4:+28628145 | None:intergenic |
| ACAAATGATATATACAGACC+AGG | 0.694048 | 3_4:-28628087 | Msa0496880:three_prime_UTR |
| GCCAACATCAGACAGTCCAG+TGG | 0.711751 | 3_4:-28629190 | Msa0496880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGATTGAAGATTTTTA+TGG | - | chr3_4:28627367-28627386 | Msa0496880:three_prime_UTR | 15.0% |
| !!! | TCATTATGTTGTATTTTTTT+TGG | - | chr3_4:28628163-28628182 | Msa0496880:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr3_4:28628857-28628876 | Msa0496880:CDS | 15.0% |
| !! | AACAAATTTGATATACTACT+AGG | + | chr3_4:28627061-28627080 | None:intergenic | 20.0% |
| !!! | TATCAAATTTGTTGATGTAA+AGG | - | chr3_4:28627068-28627087 | Msa0496880:three_prime_UTR | 20.0% |
| !! | GTTTCAATTTATCATATGTA+AGG | - | chr3_4:28627144-28627163 | Msa0496880:three_prime_UTR | 20.0% |
| !! | CAATTCACAAAATATGAAAT+CGG | - | chr3_4:28627444-28627463 | Msa0496880:three_prime_UTR | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | - | chr3_4:28627653-28627672 | Msa0496880:three_prime_UTR | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | - | chr3_4:28627654-28627673 | Msa0496880:three_prime_UTR | 20.0% |
| !! | GATAGATAGTTACAAATTAA+TGG | - | chr3_4:28628314-28628333 | Msa0496880:intron | 20.0% |
| !! | AAAACACCTTGAAAAATATT+CGG | + | chr3_4:28628695-28628714 | None:intergenic | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr3_4:28628861-28628880 | Msa0496880:CDS | 20.0% |
| !! | AACATTCAAATACTATTATG+AGG | - | chr3_4:28629218-28629237 | Msa0496880:CDS | 20.0% |
| ! | TCAGTTGTAACAATTTGATA+AGG | - | chr3_4:28627103-28627122 | Msa0496880:three_prime_UTR | 25.0% |
| ! | CTTCAATTTACCATATCTAA+TGG | - | chr3_4:28627177-28627196 | Msa0496880:three_prime_UTR | 25.0% |
| ! | GAACAAAAAACCATTAGATA+TGG | + | chr3_4:28627190-28627209 | None:intergenic | 25.0% |
| ! | ACAAAATATGAAATCGGATA+AGG | - | chr3_4:28627450-28627469 | Msa0496880:three_prime_UTR | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr3_4:28627766-28627785 | Msa0496880:three_prime_UTR | 25.0% |
| ! | AGAATGTCTTATGAAGTTAT+GGG | - | chr3_4:28627799-28627818 | Msa0496880:three_prime_UTR | 25.0% |
| !! | GAATATTCCTTTTCGATTTT+CGG | - | chr3_4:28627843-28627862 | Msa0496880:three_prime_UTR | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr3_4:28627967-28627986 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr3_4:28628001-28628020 | Msa0496880:three_prime_UTR | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr3_4:28628002-28628021 | Msa0496880:three_prime_UTR | 25.0% |
| ! | GTACAAAATACTAACCTAAT+GGG | + | chr3_4:28628113-28628132 | None:intergenic | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr3_4:28628114-28628133 | None:intergenic | 25.0% |
| !!! | ATGTTGTATTTTTTTTGGCA+TGG | - | chr3_4:28628168-28628187 | Msa0496880:CDS | 25.0% |
| ! | TAGCTAGATATATCTGAATT+TGG | + | chr3_4:28628382-28628401 | None:intergenic | 25.0% |
| ! | TACTAAAGTTCACTAATTGA+GGG | - | chr3_4:28628400-28628419 | Msa0496880:intron | 25.0% |
| ! | TATCATTTGTGGTTTCTTAT+TGG | + | chr3_4:28628636-28628655 | None:intergenic | 25.0% |
| !! | TCAATTCCGAATATTTTTCA+AGG | - | chr3_4:28628686-28628705 | Msa0496880:CDS | 25.0% |
| !!! | ATTTTTCAAGGTGTTTTTCA+TGG | - | chr3_4:28628698-28628717 | Msa0496880:CDS | 25.0% |
| !!! | TTTTTCAAGGTGTTTTTCAT+GGG | - | chr3_4:28628699-28628718 | Msa0496880:CDS | 25.0% |
| ! | AATCATATTTCGACTACAAT+TGG | - | chr3_4:28628828-28628847 | Msa0496880:CDS | 25.0% |
| ! | ATCATATTTCGACTACAATT+GGG | - | chr3_4:28628829-28628848 | Msa0496880:CDS | 25.0% |
| ! | CTTTAGTGATTTCAACATTA+TGG | - | chr3_4:28629054-28629073 | Msa0496880:CDS | 25.0% |
| ! | ATTCAAATACTATTATGAGG+AGG | - | chr3_4:28629221-28629240 | Msa0496880:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGAAA+AGG | - | chr3_4:28629278-28629297 | Msa0496880:CDS | 25.0% |
| !!! | GATGTTGATAATGATAATGA+CGG | - | chr3_4:28629318-28629337 | Msa0496880:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAC+GGG | - | chr3_4:28629319-28629338 | Msa0496880:CDS | 25.0% |
| !!! | GATAATATGTTTTAAAGCGT+TGG | - | chr3_4:28629572-28629591 | Msa0496880:five_prime_UTR | 25.0% |
| GAATCATTGCAAATTACAGT+TGG | - | chr3_4:28626978-28626997 | Msa0496880:three_prime_UTR | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr3_4:28627388-28627407 | Msa0496880:three_prime_UTR | 30.0% | |
| ATAACACTGGATTCTCTATT+AGG | - | chr3_4:28627401-28627420 | Msa0496880:three_prime_UTR | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr3_4:28627484-28627503 | Msa0496880:three_prime_UTR | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr3_4:28627495-28627514 | Msa0496880:three_prime_UTR | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr3_4:28627496-28627515 | Msa0496880:three_prime_UTR | 30.0% | |
| !!! | AGCTGGAATATTTTTGAAGT+TGG | - | chr3_4:28627618-28627637 | Msa0496880:three_prime_UTR | 30.0% |
| TAAGATATATAGATGGGAAG+TGG | - | chr3_4:28627660-28627679 | Msa0496880:three_prime_UTR | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr3_4:28627697-28627716 | None:intergenic | 30.0% |
| GAGAATGTCTTATGAAGTTA+TGG | - | chr3_4:28627798-28627817 | Msa0496880:three_prime_UTR | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr3_4:28627853-28627872 | None:intergenic | 30.0% | |
| ! | TAGTATTTTGTACTTCTCAC+AGG | - | chr3_4:28628120-28628139 | Msa0496880:three_prime_UTR | 30.0% |
| CTACTAAAGTTCACTAATTG+AGG | - | chr3_4:28628399-28628418 | Msa0496880:intron | 30.0% | |
| ! | TGTTGTATTTTGTTCTGATC+TGG | - | chr3_4:28628477-28628496 | Msa0496880:intron | 30.0% |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr3_4:28628522-28628541 | None:intergenic | 30.0% | |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr3_4:28628539-28628558 | Msa0496880:intron | 30.0% |
| AAACAATCAATCGAAAGTAG+CGG | + | chr3_4:28628591-28628610 | None:intergenic | 30.0% | |
| TGGTCTGTATATATCATTTG+TGG | + | chr3_4:28628647-28628666 | None:intergenic | 30.0% | |
| ACAAATGATATATACAGACC+AGG | - | chr3_4:28628646-28628665 | Msa0496880:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr3_4:28628743-28628762 | Msa0496880:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_4:28629039-28629058 | None:intergenic | 30.0% | |
| ! | CCTTCAAATGTTGATGTTTT+GGG | - | chr3_4:28629342-28629361 | Msa0496880:CDS | 30.0% |
| !!! | CATTTTTTGAAGACTATACC+TGG | - | chr3_4:28629550-28629569 | Msa0496880:five_prime_UTR | 30.0% |
| !! | CGCTTTAAAACATATTATCC+AGG | + | chr3_4:28629571-28629590 | None:intergenic | 30.0% |
| TAGGAGTTTCTTCTTTCTAA+AGG | - | chr3_4:28629784-28629803 | Msa0496880:five_prime_UTR | 30.0% | |
| ACAGTTGGAGTAAGAATGTT+AGG | - | chr3_4:28626993-28627012 | Msa0496880:three_prime_UTR | 35.0% | |
| CAGTTGGAGTAAGAATGTTA+GGG | - | chr3_4:28626994-28627013 | Msa0496880:three_prime_UTR | 35.0% | |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr3_4:28627216-28627235 | Msa0496880:three_prime_UTR | 35.0% |
| ATATCAAAGTCATCTGAGAG+TGG | - | chr3_4:28627244-28627263 | Msa0496880:three_prime_UTR | 35.0% | |
| !! | TGAAACTTCACTGATTCATG+CGG | - | chr3_4:28627279-28627298 | Msa0496880:three_prime_UTR | 35.0% |
| TCCATGATTCTTCATTGCTA+GGG | + | chr3_4:28627324-28627343 | None:intergenic | 35.0% | |
| TTCCATGATTCTTCATTGCT+AGG | + | chr3_4:28627325-28627344 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | + | chr3_4:28627562-28627581 | None:intergenic | 35.0% | |
| GAAAGTTAAAGAAAAACCCG+AGG | - | chr3_4:28627579-28627598 | Msa0496880:three_prime_UTR | 35.0% | |
| TTAAAGAAAAACCCGAGGAA+AGG | - | chr3_4:28627584-28627603 | Msa0496880:three_prime_UTR | 35.0% | |
| TAAAGAAAAACCCGAGGAAA+GGG | - | chr3_4:28627585-28627604 | Msa0496880:three_prime_UTR | 35.0% | |
| TTACTTCTCGAAATGATCTC+AGG | + | chr3_4:28627726-28627745 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr3_4:28627736-28627755 | Msa0496880:three_prime_UTR | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr3_4:28627805-28627824 | Msa0496880:three_prime_UTR | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr3_4:28627879-28627898 | Msa0496880:three_prime_UTR | 35.0% | |
| GGCGATATAGATTGTTTGTT+CGG | + | chr3_4:28628092-28628111 | None:intergenic | 35.0% | |
| AACAATCTATATCGCCCATT+AGG | - | chr3_4:28628096-28628115 | Msa0496880:three_prime_UTR | 35.0% | |
| AAAGTTCACTAATTGAGGGT+TGG | - | chr3_4:28628404-28628423 | Msa0496880:intron | 35.0% | |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr3_4:28628871-28628890 | Msa0496880:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr3_4:28628998-28629017 | Msa0496880:CDS | 35.0% |
| ACATTATGGTTCAGACAATG+AGG | - | chr3_4:28629068-28629087 | Msa0496880:CDS | 35.0% | |
| CATTATGGTTCAGACAATGA+GGG | - | chr3_4:28629069-28629088 | Msa0496880:CDS | 35.0% | |
| TGGTGTGTACTTGTTTACAA+CGG | + | chr3_4:28629173-28629192 | None:intergenic | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr3_4:28629193-28629212 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr3_4:28629194-28629213 | Msa0496880:CDS | 35.0% | |
| ! | GCCTTCAAATGTTGATGTTT+TGG | - | chr3_4:28629341-28629360 | Msa0496880:CDS | 35.0% |
| CCCAAAACATCAACATTTGA+AGG | + | chr3_4:28629345-28629364 | None:intergenic | 35.0% | |
| ! | TTCAAGAAAACCTTTTCCCA+AGG | - | chr3_4:28629373-28629392 | Msa0496880:CDS | 35.0% |
| GATCATGATCTTCAAACCTT+GGG | + | chr3_4:28629392-28629411 | None:intergenic | 35.0% | |
| !! | ATCATGATCGACTTGATGAA+AGG | - | chr3_4:28629403-28629422 | Msa0496880:CDS | 35.0% |
| !! | TCATGATCGACTTGATGAAA+GGG | - | chr3_4:28629404-28629423 | Msa0496880:CDS | 35.0% |
| ATGTCGTATGTTTGAGAATC+AGG | - | chr3_4:28629467-28629486 | Msa0496880:CDS | 35.0% | |
| TGTCGTATGTTTGAGAATCA+GGG | - | chr3_4:28629468-28629487 | Msa0496880:CDS | 35.0% | |
| TCGACAAGTTTACAAGATCT+TGG | - | chr3_4:28629501-28629520 | Msa0496880:CDS | 35.0% | |
| ACAAGTTTACAAGATCTTGG+AGG | - | chr3_4:28629504-28629523 | Msa0496880:exon | 35.0% | |
| GATTTCAGCTTATCGACAAA+CGG | + | chr3_4:28629613-28629632 | None:intergenic | 35.0% | |
| CTGAAATCTACCATGAATGT+TGG | - | chr3_4:28629625-28629644 | Msa0496880:five_prime_UTR | 35.0% | |
| GTCTTTAATGCCAACATTCA+TGG | + | chr3_4:28629638-28629657 | None:intergenic | 35.0% | |
| AGAAAAATTTCAGATGCCTC+CGG | + | chr3_4:28629733-28629752 | None:intergenic | 35.0% | |
| !! | GCATCTGAAATTTTTCTCGA+CGG | - | chr3_4:28629736-28629755 | Msa0496880:five_prime_UTR | 35.0% |
| TGTTCTTAAAGCAGGGAAAA+AGG | - | chr3_4:28629759-28629778 | Msa0496880:five_prime_UTR | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr3_4:28629838-28629857 | None:intergenic | 35.0% |
| CCATGATTCTTCATTGCTAG+GGG | + | chr3_4:28627323-28627342 | None:intergenic | 40.0% | |
| !! | TCTGATGTTGGCTTGTTGTT+AGG | + | chr3_4:28627535-28627554 | None:intergenic | 40.0% |
| TTTACAACCAACCCTTTCCT+CGG | + | chr3_4:28627599-28627618 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr3_4:28628009-28628028 | Msa0496880:three_prime_UTR | 40.0% |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr3_4:28628506-28628525 | Msa0496880:intron | 40.0% | |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | - | chr3_4:28628711-28628730 | Msa0496880:CDS | 40.0% |
| ! | GCATACGATTTTCGTGAGTT+TGG | + | chr3_4:28628913-28628932 | None:intergenic | 40.0% |
| CTCACGAAAATCGTATGCAT+TGG | - | chr3_4:28628915-28628934 | Msa0496880:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_4:28628928-28628947 | Msa0496880:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr3_4:28628950-28628969 | Msa0496880:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_4:28629034-28629053 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr3_4:28629234-28629253 | Msa0496880:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr3_4:28629235-28629254 | Msa0496880:CDS | 40.0% | |
| GATCTTCAAACCTTGGGAAA+AGG | + | chr3_4:28629386-28629405 | None:intergenic | 40.0% | |
| CGATCATGATCTTCAAACCT+TGG | + | chr3_4:28629393-28629412 | None:intergenic | 40.0% | |
| GTCGTATGTTTGAGAATCAG+GGG | - | chr3_4:28629469-28629488 | Msa0496880:CDS | 40.0% | |
| TACAAGATCTTGGAGGTCTT+AGG | - | chr3_4:28629511-28629530 | Msa0496880:exon | 40.0% | |
| ! | TAAAGCAGGGAAAAAGGCAT+AGG | - | chr3_4:28629765-28629784 | Msa0496880:five_prime_UTR | 40.0% |
| ! | TAGAAGGCGTAACAGAAGAT+GGG | + | chr3_4:28629822-28629841 | None:intergenic | 40.0% |
| ! | TTAGAAGGCGTAACAGAAGA+TGG | + | chr3_4:28629823-28629842 | None:intergenic | 40.0% |
| CCCCTAGCAATGAAGAATCA+TGG | - | chr3_4:28627320-28627339 | Msa0496880:three_prime_UTR | 45.0% | |
| TTACAACCAACCCTTTCCTC+GGG | + | chr3_4:28627598-28627617 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_4:28627601-28627620 | Msa0496880:three_prime_UTR | 45.0% |
| CTCAGGTAACACAAATGCTC+TGG | + | chr3_4:28627709-28627728 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_4:28627811-28627830 | Msa0496880:three_prime_UTR | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr3_4:28627885-28627904 | Msa0496880:three_prime_UTR | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr3_4:28627888-28627907 | Msa0496880:three_prime_UTR | 45.0% | |
| TGTCTTCAGCAGCATCAACT+TGG | + | chr3_4:28627987-28628006 | None:intergenic | 45.0% | |
| ACTTCAACAACACACTAGCC+TGG | + | chr3_4:28628667-28628686 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr3_4:28628927-28628946 | Msa0496880:CDS | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_4:28629087-28629106 | Msa0496880:CDS | 45.0% | |
| ! | TCATGCTGAGTTGGACTTCA+AGG | - | chr3_4:28629096-28629115 | Msa0496880:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr3_4:28629146-28629165 | Msa0496880:CDS | 45.0% | |
| AAGATCTTGGAGGTCTTAGG+CGG | - | chr3_4:28629514-28629533 | Msa0496880:exon | 45.0% | |
| TCGATATCGTTGTGCTTGAG+TGG | + | chr3_4:28629662-28629681 | None:intergenic | 45.0% | |
| TCGACGGTGTTCTTAAAGCA+GGG | - | chr3_4:28629752-28629771 | Msa0496880:five_prime_UTR | 45.0% | |
| ACCACTGGACTGTCTGATGT+TGG | + | chr3_4:28627547-28627566 | None:intergenic | 50.0% | |
| GAAAAACCCGAGGAAAGGGT+TGG | - | chr3_4:28627589-28627608 | Msa0496880:three_prime_UTR | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_4:28627814-28627833 | Msa0496880:three_prime_UTR | 50.0% | |
| GAAGGCCTACTTCGGACTTT+AGG | - | chr3_4:28628879-28628898 | Msa0496880:CDS | 50.0% | |
| AGCCACCTAAAGTCCGAAGT+AGG | + | chr3_4:28628887-28628906 | None:intergenic | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr3_4:28629151-28629170 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTTGACATG+AGG | - | chr3_4:28629424-28629443 | Msa0496880:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATC+CGG | - | chr3_4:28629711-28629730 | Msa0496880:five_prime_UTR | 50.0% | |
| CTCGACGGTGTTCTTAAAGC+AGG | - | chr3_4:28629751-28629770 | Msa0496880:five_prime_UTR | 50.0% | |
| GCCAACATCAGACAGTCCAG+TGG | - | chr3_4:28627543-28627562 | Msa0496880:three_prime_UTR | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr3_4:28627892-28627911 | Msa0496880:three_prime_UTR | 55.0% |
| TGGGCTTTGCTCATGGCACA+TGG | - | chr3_4:28628718-28628737 | Msa0496880:CDS | 55.0% | |
| GGGCTTTGCTCATGGCACAT+GGG | - | chr3_4:28628719-28628738 | Msa0496880:CDS | 55.0% | |
| GGCCTACTTCGGACTTTAGG+TGG | - | chr3_4:28628882-28628901 | Msa0496880:CDS | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr3_4:28629152-28629171 | None:intergenic | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3_4:28627819-28627838 | Msa0496880:three_prime_UTR | 60.0% | |
| ACGTGTTTGCGCAGATCCGG+AGG | - | chr3_4:28629714-28629733 | Msa0496880:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 28626879 | 28629876 | 28626879 | ID=Msa0496880;Name=Msa0496880 |
| chr3_4 | mRNA | 28626879 | 28629876 | 28626879 | ID=Msa0496880-mRNA-1;Parent=Msa0496880;Name=Msa0496880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=356|1|1|1|1|1|2|1272|323 |
| chr3_4 | exon | 28626879 | 28628239 | 28626879 | ID=Msa0496880-mRNA-1:exon:6605;Parent=Msa0496880-mRNA-1 |
| chr3_4 | exon | 28628638 | 28629876 | 28628638 | ID=Msa0496880-mRNA-1:exon:6604;Parent=Msa0496880-mRNA-1 |
| chr3_4 | five_prime_UTR | 28629521 | 28629876 | 28629521 | ID=Msa0496880-mRNA-1:five_prime_utr;Parent=Msa0496880-mRNA-1 |
| chr3_4 | CDS | 28628638 | 28629520 | 28628638 | ID=Msa0496880-mRNA-1:cds;Parent=Msa0496880-mRNA-1 |
| chr3_4 | CDS | 28628151 | 28628239 | 28628151 | ID=Msa0496880-mRNA-1:cds;Parent=Msa0496880-mRNA-1 |
| chr3_4 | three_prime_UTR | 28626879 | 28628150 | 28626879 | ID=Msa0496880-mRNA-1:three_prime_utr;Parent=Msa0496880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
