AlfalfaGEDB | Msa0497200

M. sativa cultivar zhongmu-4 / Msa0497200

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0497200	KEH33319.1	88.144	194	21	1	1	194	1	192	1.15e-121	352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0497200	sp\|Q9M9U9\|RKD1_ARATH	62.500	128	41	2	48	168	112	239	8.90e-50	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0497200	A0A072UU07	88.144	194	21	1	1	194	1	192	5.48e-122	352

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TFs/TRs:

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Gene ID	Type	Classification
Msa0497200	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0497200	MtrunA17_Chr3g0092141	88.144	194	21	1	1	194	1	192	1.06e-125	352
Msa0497200	MtrunA17_Chr4g0060761	53.889	180	66	6	5	175	101	272	2.13e-55	177
Msa0497200	MtrunA17_Chr3g0127001	49.107	112	51	1	61	172	154	259	9.46e-31	113
Msa0497200	MtrunA17_Chr1g0182631	47.321	112	53	1	61	172	127	232	9.79e-29	107
Msa0497200	MtrunA17_Chr5g0406901	36.719	128	73	2	47	167	188	314	1.67e-22	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0497200	AT1G18790.1	62.500	128	41	2	48	168	112	239	9.05e-51	165
Msa0497200	AT1G74480.1	59.130	115	43	1	54	164	128	242	4.02e-43	146
Msa0497200	AT5G66990.1	50.746	134	59	2	42	170	142	273	1.51e-41	142
Msa0497200	AT5G53040.1	55.340	103	40	2	66	168	153	249	3.19e-31	114
Msa0497200	AT4G35590.2	39.130	115	63	1	61	168	192	306	3.24e-19	84.0
Msa0497200	AT4G35590.1	39.130	115	63	1	61	168	242	356	4.21e-19	84.3

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Find 36 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTGATGAAAACACAAAA+AGG	0.320323	3_4:-29491449	Msa0497200:CDS
AAGAAAAGGTGTAGGGATCT+TGG	0.330015	3_4:-29492408	Msa0497200:CDS
AATGTGTAAGCCCAACATTA+AGG	0.530566	3_4:+29492433	None:intergenic
AATTATTCAATGACAGACTA+TGG	0.286299	3_4:-29492681	None:intergenic
ACATTTGAAGAAAAGGTGTA+GGG	0.575896	3_4:-29492415	Msa0497200:CDS
AGAGAAGGCTCATGGTTATG+AGG	0.522137	3_4:-29491392	Msa0497200:CDS
AGGCTAATTACAAGAAGAGA+AGG	0.568624	3_4:-29491407	Msa0497200:CDS
AGGCTCATTAATTTCCTATG+TGG	0.543250	3_4:+29492372	None:intergenic
AGTTGATGCTGGATATTATT+CGG	0.383233	3_4:-29492619	Msa0497200:CDS
ATGAATGTGATGAGAAGATA+AGG	0.493501	3_4:-29491530	Msa0497200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTCTTTATAAGGGTTTGA+AGG	+	chr3_4:29491634-29491653	None:intergenic	30.0%
AAAAATCACATTGTGTAGTG+AGG	-	chr3_4:29491764-29491783	Msa0497200:intron	30.0%
ATGAATGTGATGAGAAGATA+AGG	-	chr3_4:29492453-29492472	Msa0497200:CDS	30.0%
ATTGCAGAAAGAAATGAAGA+AGG	-	chr3_4:29492490-29492509	Msa0497200:CDS	30.0%
CATTCTTTATAAGGGTTTGA+AGG	+	chr3_4:29491634-29491653	None:intergenic	30.0%
AAAAATCACATTGTGTAGTG+AGG	-	chr3_4:29491764-29491783	Msa0497200:intron	30.0%
ATGAATGTGATGAGAAGATA+AGG	-	chr3_4:29492453-29492472	Msa0497200:CDS	30.0%
ATTGCAGAAAGAAATGAAGA+AGG	-	chr3_4:29492490-29492509	Msa0497200:CDS	30.0%
CTAAAAATGTGGTTCCAATG+TGG	-	chr3_4:29491336-29491355	Msa0497200:CDS	35.0%
TACTGGAGAAAATGTTGCAA+AGG	-	chr3_4:29491415-29491434	Msa0497200:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	29491311	29492694	29491311	ID=Msa0497200;Name=Msa0497200
chr3_4	mRNA	29491311	29492694	29491311	ID=Msa0497200-mRNA-1;Parent=Msa0497200;Name=Msa0497200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|199
chr3_4	exon	29492347	29492694	29492347	ID=Msa0497200-mRNA-1:exon:6765;Parent=Msa0497200-mRNA-1
chr3_4	exon	29491311	29491562	29491311	ID=Msa0497200-mRNA-1:exon:6764;Parent=Msa0497200-mRNA-1
chr3_4	CDS	29492347	29492694	29492347	ID=Msa0497200-mRNA-1:cds;Parent=Msa0497200-mRNA-1
chr3_4	CDS	29491311	29491562	29491311	ID=Msa0497200-mRNA-1:cds;Parent=Msa0497200-mRNA-1

Gene Sequence

>Msa0497200

ATGACAGACTATGGTTATGGTGATGCTAAAAATGTGGTTCCAATGTGGAATGAAGTTGATGCTGGATATTATTCGGATAAACATGTCTTTTCGATTAGCAACATTACTGGAGAAAATGTTGCAAAGGAAATTGTGAAGGGTAAGAGATGTAGAGAAGAGAATACTAATAGTGCAAGAATGCTAACAAAAGAAACAATTTCTGAGTACTTCTATGTGCCAATATCTCAAGCTGCTAGAGACCTTAATGTTGGGCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAATTAATGAGCCTTCAAACCCTTATAAAGAATGTACAAGAGCAAGGTAATGAATGTGATGAGAAGATAAGGAATGCTGTGGAAGTATTGCAGAAAGAAATGAAGAAGGTAGAGGAAAAGCCAGATTTGCAACTTGATGAAAACACAAAAAGGCTTAGACAAGCTTGTTTCAAGGCTAATTACAAGAAGAGAAGGCTCATGGTTATGAGGTTAATGGAACAACAGGAGTCTTCTCTCATTGAAGGTGTTGATGATCACAAAAAGTCAAATTTCTTCTTAACATCATGTTAA

Protein sequence

>Msa0497200

MTDYGYGDAKNVVPMWNEVDAGYYSDKHVFSISNITGENVAKEIVKGKRCREENTNSARMLTKETISEYFYVPISQAARDLNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNECDEKIRNAVEVLQKEMKKVEEKPDLQLDENTKRLRQACFKANYKKRRLMVMRLMEQQESSLIEGVDDHKKSNFFLTSC*