Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497200 | KEH33319.1 | 88.144 | 194 | 21 | 1 | 1 | 194 | 1 | 192 | 1.15e-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497200 | sp|Q9M9U9|RKD1_ARATH | 62.500 | 128 | 41 | 2 | 48 | 168 | 112 | 239 | 8.90e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497200 | A0A072UU07 | 88.144 | 194 | 21 | 1 | 1 | 194 | 1 | 192 | 5.48e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0497200 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497200 | MtrunA17_Chr3g0092141 | 88.144 | 194 | 21 | 1 | 1 | 194 | 1 | 192 | 1.06e-125 | 352 |
| Msa0497200 | MtrunA17_Chr4g0060761 | 53.889 | 180 | 66 | 6 | 5 | 175 | 101 | 272 | 2.13e-55 | 177 |
| Msa0497200 | MtrunA17_Chr3g0127001 | 49.107 | 112 | 51 | 1 | 61 | 172 | 154 | 259 | 9.46e-31 | 113 |
| Msa0497200 | MtrunA17_Chr1g0182631 | 47.321 | 112 | 53 | 1 | 61 | 172 | 127 | 232 | 9.79e-29 | 107 |
| Msa0497200 | MtrunA17_Chr5g0406901 | 36.719 | 128 | 73 | 2 | 47 | 167 | 188 | 314 | 1.67e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497200 | AT1G18790.1 | 62.500 | 128 | 41 | 2 | 48 | 168 | 112 | 239 | 9.05e-51 | 165 |
| Msa0497200 | AT1G74480.1 | 59.130 | 115 | 43 | 1 | 54 | 164 | 128 | 242 | 4.02e-43 | 146 |
| Msa0497200 | AT5G66990.1 | 50.746 | 134 | 59 | 2 | 42 | 170 | 142 | 273 | 1.51e-41 | 142 |
| Msa0497200 | AT5G53040.1 | 55.340 | 103 | 40 | 2 | 66 | 168 | 153 | 249 | 3.19e-31 | 114 |
| Msa0497200 | AT4G35590.2 | 39.130 | 115 | 63 | 1 | 61 | 168 | 192 | 306 | 3.24e-19 | 84.0 |
| Msa0497200 | AT4G35590.1 | 39.130 | 115 | 63 | 1 | 61 | 168 | 242 | 356 | 4.21e-19 | 84.3 |
Find 36 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTGTACATTCTTTATA+AGG | 0.172964 | 3_4:+29492343 | None:intergenic |
| AATTATTCAATGACAGACTA+TGG | 0.286299 | 3_4:-29492681 | None:intergenic |
| AACTTGATGAAAACACAAAA+AGG | 0.320323 | 3_4:-29491449 | Msa0497200:CDS |
| TCTCTAGCAGCTTGAGATAT+TGG | 0.323623 | 3_4:+29492456 | None:intergenic |
| AAGAAAAGGTGTAGGGATCT+TGG | 0.330015 | 3_4:-29492408 | Msa0497200:CDS |
| GCTCATGGTTATGAGGTTAA+TGG | 0.347444 | 3_4:-29491385 | Msa0497200:CDS |
| TACTTGTACATTCTTTATAA+GGG | 0.359802 | 3_4:+29492344 | None:intergenic |
| AGTTGATGCTGGATATTATT+CGG | 0.383233 | 3_4:-29492619 | Msa0497200:CDS |
| TCAATGACAGACTATGGTTA+TGG | 0.408759 | 3_4:-29492675 | Msa0497200:CDS |
| GGCTTACACATTTGAAGAAA+AGG | 0.415724 | 3_4:-29492422 | Msa0497200:CDS |
| CATTCTTTATAAGGGTTTGA+AGG | 0.417292 | 3_4:+29492352 | None:intergenic |
| TATGAGGTTAATGGAACAAC+AGG | 0.443913 | 3_4:-29491376 | Msa0497200:CDS |
| GCTTAGACAAGCTTGTTTCA+AGG | 0.460994 | 3_4:-29491427 | Msa0497200:CDS |
| CAGGAGTCTTCTCTCATTGA+AGG | 0.474327 | 3_4:-29491357 | Msa0497200:CDS |
| CTGCTAGAGACCTTAATGTT+GGG | 0.489436 | 3_4:-29492443 | Msa0497200:CDS |
| GAAAGAAATGAAGAAGGTAG+AGG | 0.489935 | 3_4:-29491487 | Msa0497200:CDS |
| ATGAATGTGATGAGAAGATA+AGG | 0.493501 | 3_4:-29491530 | Msa0497200:CDS |
| ATTGCAGAAAGAAATGAAGA+AGG | 0.517898 | 3_4:-29491493 | Msa0497200:CDS |
| AGAGAAGGCTCATGGTTATG+AGG | 0.522137 | 3_4:-29491392 | Msa0497200:CDS |
| GCTGCTAGAGACCTTAATGT+TGG | 0.523622 | 3_4:-29492444 | Msa0497200:CDS |
| AATGTGTAAGCCCAACATTA+AGG | 0.530566 | 3_4:+29492433 | None:intergenic |
| CACATTTGAAGAAAAGGTGT+AGG | 0.540159 | 3_4:-29492416 | Msa0497200:CDS |
| AGGCTCATTAATTTCCTATG+TGG | 0.543250 | 3_4:+29492372 | None:intergenic |
| GAATTCAAAGGTGGCCACAT+AGG | 0.544869 | 3_4:-29492386 | Msa0497200:CDS |
| ATGTGGAATGAAGTTGATGC+TGG | 0.550987 | 3_4:-29492630 | Msa0497200:CDS |
| TACTGGAGAAAATGTTGCAA+AGG | 0.556786 | 3_4:-29492568 | Msa0497200:CDS |
| AGGCTAATTACAAGAAGAGA+AGG | 0.568624 | 3_4:-29491407 | Msa0497200:CDS |
| TGTTGCAAAGGAAATTGTGA+AGG | 0.572064 | 3_4:-29492556 | Msa0497200:CDS |
| ACATTTGAAGAAAAGGTGTA+GGG | 0.575896 | 3_4:-29492415 | Msa0497200:CDS |
| TTATTGGTGGTGCAGGAGCA+AGG | 0.586089 | 3_4:-29491555 | Msa0497200:intron |
| TTACAAGAAGAGAAGGCTCA+TGG | 0.590126 | 3_4:-29491400 | Msa0497200:CDS |
| GTAGGGATCTTGGAATTCAA+AGG | 0.603743 | 3_4:-29492398 | Msa0497200:CDS |
| GTTGCAAAGGAAATTGTGAA+GGG | 0.628143 | 3_4:-29492555 | Msa0497200:CDS |
| GCATCAACTTCATTCCACAT+TGG | 0.632538 | 3_4:+29492633 | None:intergenic |
| TGAGAAGATAAGGAATGCTG+TGG | 0.656309 | 3_4:-29491520 | Msa0497200:CDS |
| GGGATCTTGGAATTCAAAGG+TGG | 0.676630 | 3_4:-29492395 | Msa0497200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAACTCAAAAAATAT+GGG | + | chr3_4:29491669-29491688 | None:intergenic | 10.0% |
| !! | TATTAATAACTCAAAAAATA+TGG | + | chr3_4:29491670-29491689 | None:intergenic | 10.0% |
| !!! | ATATATTTTAGAAAAATATG+AGG | - | chr3_4:29492110-29492129 | Msa0497200:intron | 10.0% |
| !!! | TTTTATTTATTAATTATTGG+TGG | - | chr3_4:29492415-29492434 | Msa0497200:CDS | 10.0% |
| !! | ATTAATAACTCAAAAAATAT+GGG | + | chr3_4:29491669-29491688 | None:intergenic | 10.0% |
| !! | TATTAATAACTCAAAAAATA+TGG | + | chr3_4:29491670-29491689 | None:intergenic | 10.0% |
| !!! | ATATATTTTAGAAAAATATG+AGG | - | chr3_4:29492110-29492129 | Msa0497200:intron | 10.0% |
| !!! | TTTTATTTATTAATTATTGG+TGG | - | chr3_4:29492415-29492434 | Msa0497200:CDS | 10.0% |
| !!! | AAAAAGAAAATCATGATTTT+AGG | + | chr3_4:29492216-29492235 | None:intergenic | 15.0% |
| !!! | AAAAAGAAAATCATGATTTT+AGG | + | chr3_4:29492216-29492235 | None:intergenic | 15.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | + | chr3_4:29491642-29491661 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | + | chr3_4:29491643-29491662 | None:intergenic | 20.0% |
| !! | TGTTAAAAGTTATAGCAAAA+AGG | - | chr3_4:29492072-29492091 | Msa0497200:intron | 20.0% |
| !!! | TAGGTTAATTTTCACTATAA+GGG | + | chr3_4:29492136-29492155 | None:intergenic | 20.0% |
| !!! | TTAGGTTAATTTTCACTATA+AGG | + | chr3_4:29492137-29492156 | None:intergenic | 20.0% |
| !!! | GGAATTGAAAAATCAATTTT+AGG | + | chr3_4:29492155-29492174 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTACTAATTTTTG+TGG | - | chr3_4:29492230-29492249 | Msa0497200:intron | 20.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | + | chr3_4:29491642-29491661 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | + | chr3_4:29491643-29491662 | None:intergenic | 20.0% |
| !! | TGTTAAAAGTTATAGCAAAA+AGG | - | chr3_4:29492072-29492091 | Msa0497200:intron | 20.0% |
| !!! | TAGGTTAATTTTCACTATAA+GGG | + | chr3_4:29492136-29492155 | None:intergenic | 20.0% |
| !!! | TTAGGTTAATTTTCACTATA+AGG | + | chr3_4:29492137-29492156 | None:intergenic | 20.0% |
| !!! | GGAATTGAAAAATCAATTTT+AGG | + | chr3_4:29492155-29492174 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTACTAATTTTTG+TGG | - | chr3_4:29492230-29492249 | Msa0497200:intron | 20.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | - | chr3_4:29492276-29492295 | Msa0497200:intron | 25.0% |
| ! | AACTTGATGAAAACACAAAA+AGG | - | chr3_4:29492534-29492553 | Msa0497200:CDS | 25.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | - | chr3_4:29492276-29492295 | Msa0497200:intron | 25.0% |
| ! | AACTTGATGAAAACACAAAA+AGG | - | chr3_4:29492534-29492553 | Msa0497200:CDS | 25.0% |
| ! | TTATGGTGATGCTAAAAATG+TGG | - | chr3_4:29491325-29491344 | Msa0497200:CDS | 30.0% |
| ! | AGTTGATGCTGGATATTATT+CGG | - | chr3_4:29491364-29491383 | Msa0497200:CDS | 30.0% |
| ! | TTTTCGATTAGCAACATTAC+TGG | - | chr3_4:29491398-29491417 | Msa0497200:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | - | chr3_4:29491568-29491587 | Msa0497200:intron | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | + | chr3_4:29491634-29491653 | None:intergenic | 30.0% | |
| !!! | CACAATGTGATTTTTTGGTT+TGG | + | chr3_4:29491759-29491778 | None:intergenic | 30.0% |
| !!! | CACTACACAATGTGATTTTT+TGG | + | chr3_4:29491764-29491783 | None:intergenic | 30.0% |
| AAAAATCACATTGTGTAGTG+AGG | - | chr3_4:29491764-29491783 | Msa0497200:intron | 30.0% | |
| !! | TTATTAATTATTGGTGGTGC+AGG | - | chr3_4:29492421-29492440 | Msa0497200:CDS | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | - | chr3_4:29492453-29492472 | Msa0497200:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | - | chr3_4:29492490-29492509 | Msa0497200:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | + | chr3_4:29492527-29492546 | None:intergenic | 30.0% |
| ! | TTATGGTGATGCTAAAAATG+TGG | - | chr3_4:29491325-29491344 | Msa0497200:CDS | 30.0% |
| ! | AGTTGATGCTGGATATTATT+CGG | - | chr3_4:29491364-29491383 | Msa0497200:CDS | 30.0% |
| ! | TTTTCGATTAGCAACATTAC+TGG | - | chr3_4:29491398-29491417 | Msa0497200:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | - | chr3_4:29491568-29491587 | Msa0497200:intron | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | + | chr3_4:29491634-29491653 | None:intergenic | 30.0% | |
| !!! | CACAATGTGATTTTTTGGTT+TGG | + | chr3_4:29491759-29491778 | None:intergenic | 30.0% |
| !!! | CACTACACAATGTGATTTTT+TGG | + | chr3_4:29491764-29491783 | None:intergenic | 30.0% |
| AAAAATCACATTGTGTAGTG+AGG | - | chr3_4:29491764-29491783 | Msa0497200:intron | 30.0% | |
| !! | TTATTAATTATTGGTGGTGC+AGG | - | chr3_4:29492421-29492440 | Msa0497200:CDS | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | - | chr3_4:29492453-29492472 | Msa0497200:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | - | chr3_4:29492490-29492509 | Msa0497200:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | + | chr3_4:29492527-29492546 | None:intergenic | 30.0% |
| CTAAAAATGTGGTTCCAATG+TGG | - | chr3_4:29491336-29491355 | Msa0497200:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | - | chr3_4:29491415-29491434 | Msa0497200:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | - | chr3_4:29491427-29491446 | Msa0497200:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | - | chr3_4:29491428-29491447 | Msa0497200:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | + | chr3_4:29491553-29491572 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | - | chr3_4:29491561-29491580 | Msa0497200:intron | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | - | chr3_4:29491567-29491586 | Msa0497200:intron | 35.0% |
| AGGCTCATTAATTTCCTATG+TGG | + | chr3_4:29491614-29491633 | None:intergenic | 35.0% | |
| CAAGTCGCAAAATTTAGAGA+TGG | + | chr3_4:29492176-29492195 | None:intergenic | 35.0% | |
| ! | CATCTCTAAATTTTGCGACT+TGG | - | chr3_4:29492174-29492193 | Msa0497200:intron | 35.0% |
| !!! | AAATTTTGCGACTTGGTAAG+CGG | - | chr3_4:29492181-29492200 | Msa0497200:intron | 35.0% |
| ATGTTTGCGCAAGCAAATTA+TGG | + | chr3_4:29492326-29492345 | None:intergenic | 35.0% | |
| GAAAGAAATGAAGAAGGTAG+AGG | - | chr3_4:29492496-29492515 | Msa0497200:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | - | chr3_4:29492576-29492595 | Msa0497200:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | - | chr3_4:29492607-29492626 | Msa0497200:CDS | 35.0% | |
| CTAAAAATGTGGTTCCAATG+TGG | - | chr3_4:29491336-29491355 | Msa0497200:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | - | chr3_4:29491415-29491434 | Msa0497200:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | - | chr3_4:29491427-29491446 | Msa0497200:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | - | chr3_4:29491428-29491447 | Msa0497200:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | + | chr3_4:29491553-29491572 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | - | chr3_4:29491561-29491580 | Msa0497200:intron | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | - | chr3_4:29491567-29491586 | Msa0497200:intron | 35.0% |
| AGGCTCATTAATTTCCTATG+TGG | + | chr3_4:29491614-29491633 | None:intergenic | 35.0% | |
| CAAGTCGCAAAATTTAGAGA+TGG | + | chr3_4:29492176-29492195 | None:intergenic | 35.0% | |
| ! | CATCTCTAAATTTTGCGACT+TGG | - | chr3_4:29492174-29492193 | Msa0497200:intron | 35.0% |
| !!! | AAATTTTGCGACTTGGTAAG+CGG | - | chr3_4:29492181-29492200 | Msa0497200:intron | 35.0% |
| ATGTTTGCGCAAGCAAATTA+TGG | + | chr3_4:29492326-29492345 | None:intergenic | 35.0% | |
| GAAAGAAATGAAGAAGGTAG+AGG | - | chr3_4:29492496-29492515 | Msa0497200:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | - | chr3_4:29492576-29492595 | Msa0497200:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | - | chr3_4:29492607-29492626 | Msa0497200:CDS | 35.0% | |
| GCATCAACTTCATTCCACAT+TGG | + | chr3_4:29491353-29491372 | None:intergenic | 40.0% | |
| !! | ATGTGGAATGAAGTTGATGC+TGG | - | chr3_4:29491353-29491372 | Msa0497200:CDS | 40.0% |
| TCTCTAGCAGCTTGAGATAT+TGG | + | chr3_4:29491530-29491549 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | - | chr3_4:29491540-29491559 | Msa0497200:CDS | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | - | chr3_4:29491575-29491594 | Msa0497200:intron | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | - | chr3_4:29491585-29491604 | Msa0497200:intron | 40.0% | |
| ATTGTGTAGTGAGGAGATCT+AGG | - | chr3_4:29491773-29491792 | Msa0497200:intron | 40.0% | |
| TTGTGTAGTGAGGAGATCTA+GGG | - | chr3_4:29491774-29491793 | Msa0497200:intron | 40.0% | |
| TGAGAAGATAAGGAATGCTG+TGG | - | chr3_4:29492463-29492482 | Msa0497200:CDS | 40.0% | |
| ! | GCTTAGACAAGCTTGTTTCA+AGG | - | chr3_4:29492556-29492575 | Msa0497200:CDS | 40.0% |
| TTACAAGAAGAGAAGGCTCA+TGG | - | chr3_4:29492583-29492602 | Msa0497200:CDS | 40.0% | |
| GCTCATGGTTATGAGGTTAA+TGG | - | chr3_4:29492598-29492617 | Msa0497200:CDS | 40.0% | |
| GCATCAACTTCATTCCACAT+TGG | + | chr3_4:29491353-29491372 | None:intergenic | 40.0% | |
| !! | ATGTGGAATGAAGTTGATGC+TGG | - | chr3_4:29491353-29491372 | Msa0497200:CDS | 40.0% |
| TCTCTAGCAGCTTGAGATAT+TGG | + | chr3_4:29491530-29491549 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | - | chr3_4:29491540-29491559 | Msa0497200:CDS | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | - | chr3_4:29491575-29491594 | Msa0497200:intron | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | - | chr3_4:29491585-29491604 | Msa0497200:intron | 40.0% | |
| ATTGTGTAGTGAGGAGATCT+AGG | - | chr3_4:29491773-29491792 | Msa0497200:intron | 40.0% | |
| TTGTGTAGTGAGGAGATCTA+GGG | - | chr3_4:29491774-29491793 | Msa0497200:intron | 40.0% | |
| TGAGAAGATAAGGAATGCTG+TGG | - | chr3_4:29492463-29492482 | Msa0497200:CDS | 40.0% | |
| ! | GCTTAGACAAGCTTGTTTCA+AGG | - | chr3_4:29492556-29492575 | Msa0497200:CDS | 40.0% |
| TTACAAGAAGAGAAGGCTCA+TGG | - | chr3_4:29492583-29492602 | Msa0497200:CDS | 40.0% | |
| GCTCATGGTTATGAGGTTAA+TGG | - | chr3_4:29492598-29492617 | Msa0497200:CDS | 40.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | - | chr3_4:29491539-29491558 | Msa0497200:CDS | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | - | chr3_4:29491588-29491607 | Msa0497200:intron | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | - | chr3_4:29491597-29491616 | Msa0497200:intron | 45.0% | |
| AGAGAAGGCTCATGGTTATG+AGG | - | chr3_4:29492591-29492610 | Msa0497200:CDS | 45.0% | |
| CAGGAGTCTTCTCTCATTGA+AGG | - | chr3_4:29492626-29492645 | Msa0497200:CDS | 45.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | - | chr3_4:29491539-29491558 | Msa0497200:CDS | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | - | chr3_4:29491588-29491607 | Msa0497200:intron | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | - | chr3_4:29491597-29491616 | Msa0497200:intron | 45.0% | |
| AGAGAAGGCTCATGGTTATG+AGG | - | chr3_4:29492591-29492610 | Msa0497200:CDS | 45.0% | |
| CAGGAGTCTTCTCTCATTGA+AGG | - | chr3_4:29492626-29492645 | Msa0497200:CDS | 45.0% | |
| !!! | TTTTTAAAATGTTTTTTTTT+TGG | - | chr3_4:29491840-29491859 | Msa0497200:intron | 5.0% |
| !!! | ACATTTTATTTATTAATTAT+TGG | - | chr3_4:29492412-29492431 | Msa0497200:CDS | 5.0% |
| !!! | TTTTTAAAATGTTTTTTTTT+TGG | - | chr3_4:29491840-29491859 | Msa0497200:intron | 5.0% |
| !!! | ACATTTTATTTATTAATTAT+TGG | - | chr3_4:29492412-29492431 | Msa0497200:CDS | 5.0% |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | - | chr3_4:29492428-29492447 | Msa0497200:CDS | 50.0% |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | - | chr3_4:29492428-29492447 | Msa0497200:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 29491311 | 29492694 | 29491311 | ID=Msa0497200;Name=Msa0497200 |
| chr3_4 | mRNA | 29491311 | 29492694 | 29491311 | ID=Msa0497200-mRNA-1;Parent=Msa0497200;Name=Msa0497200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|199 |
| chr3_4 | exon | 29492347 | 29492694 | 29492347 | ID=Msa0497200-mRNA-1:exon:6765;Parent=Msa0497200-mRNA-1 |
| chr3_4 | exon | 29491311 | 29491562 | 29491311 | ID=Msa0497200-mRNA-1:exon:6764;Parent=Msa0497200-mRNA-1 |
| chr3_4 | CDS | 29492347 | 29492694 | 29492347 | ID=Msa0497200-mRNA-1:cds;Parent=Msa0497200-mRNA-1 |
| chr3_4 | CDS | 29491311 | 29491562 | 29491311 | ID=Msa0497200-mRNA-1:cds;Parent=Msa0497200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
