Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497230 | KEH33323.1 | 86.820 | 478 | 44 | 3 | 1 | 468 | 1 | 469 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497230 | sp|P93755|C3H30_ARATH | 54.684 | 395 | 142 | 6 | 25 | 396 | 33 | 413 | 1.40e-135 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497230 | A0A072UW95 | 86.820 | 478 | 44 | 3 | 1 | 468 | 1 | 469 | 0.0 | 844 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0497230 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497230 | MtrunA17_Chr3g0092171 | 84.100 | 478 | 43 | 4 | 1 | 468 | 52 | 506 | 0.0 | 807 |
| Msa0497230 | MtrunA17_Chr3g0088521 | 63.030 | 495 | 105 | 6 | 1 | 417 | 1 | 495 | 0.0 | 540 |
| Msa0497230 | MtrunA17_Chr3g0088521 | 74.510 | 51 | 12 | 1 | 418 | 467 | 631 | 681 | 2.81e-17 | 84.7 |
| Msa0497230 | MtrunA17_Chr3g0092221 | 59.016 | 427 | 94 | 9 | 88 | 468 | 12 | 403 | 1.56e-159 | 457 |
| Msa0497230 | MtrunA17_Chr7g0257831 | 50.749 | 467 | 151 | 7 | 26 | 417 | 33 | 495 | 5.31e-140 | 419 |
| Msa0497230 | MtrunA17_Chr7g0257831 | 42.391 | 92 | 48 | 2 | 381 | 467 | 584 | 675 | 1.79e-12 | 69.7 |
| Msa0497230 | MtrunA17_Chr1g0171151 | 46.239 | 452 | 171 | 6 | 24 | 407 | 15 | 462 | 2.17e-129 | 387 |
| Msa0497230 | MtrunA17_Chr5g0437251 | 50.476 | 315 | 146 | 2 | 38 | 352 | 28 | 332 | 8.56e-104 | 324 |
| Msa0497230 | MtrunA17_Chr5g0430211 | 45.685 | 394 | 186 | 8 | 1 | 384 | 1 | 376 | 2.33e-96 | 305 |
| Msa0497230 | MtrunA17_Chr1g0187591 | 49.371 | 318 | 156 | 3 | 37 | 352 | 30 | 344 | 1.42e-93 | 296 |
| Msa0497230 | MtrunA17_Chr3g0113651 | 45.981 | 311 | 124 | 3 | 38 | 348 | 8 | 274 | 1.88e-87 | 276 |
| Msa0497230 | MtrunA17_Chr3g0105131 | 39.601 | 351 | 163 | 6 | 42 | 391 | 19 | 321 | 3.23e-65 | 218 |
| Msa0497230 | MtrunA17_Chr3g0105101 | 41.254 | 303 | 114 | 4 | 45 | 344 | 30 | 271 | 4.24e-64 | 212 |
| Msa0497230 | MtrunA17_Chr3g0105141 | 61.832 | 131 | 49 | 1 | 216 | 345 | 15 | 145 | 6.75e-52 | 173 |
| Msa0497230 | MtrunA17_Chr8g0389561 | 48.485 | 165 | 78 | 2 | 233 | 390 | 77 | 241 | 8.54e-49 | 171 |
| Msa0497230 | MtrunA17_Chr6g0487481 | 63.551 | 107 | 39 | 0 | 233 | 339 | 99 | 205 | 9.24e-47 | 166 |
| Msa0497230 | MtrunA17_Chr3g0135351 | 52.482 | 141 | 64 | 3 | 227 | 364 | 43 | 183 | 7.58e-46 | 160 |
| Msa0497230 | MtrunA17_Chr2g0324781 | 62.136 | 103 | 39 | 0 | 237 | 339 | 77 | 179 | 1.06e-41 | 153 |
| Msa0497230 | MtrunA17_Chr4g0040391 | 56.075 | 107 | 47 | 0 | 233 | 339 | 56 | 162 | 5.53e-41 | 149 |
| Msa0497230 | MtrunA17_Chr3g0105121 | 44.156 | 154 | 84 | 2 | 236 | 387 | 8 | 161 | 7.44e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497230 | AT2G41900.1 | 54.684 | 395 | 142 | 6 | 25 | 396 | 33 | 413 | 1.42e-136 | 410 |
| Msa0497230 | AT5G12850.1 | 49.409 | 423 | 170 | 9 | 1 | 389 | 1 | 413 | 7.03e-123 | 374 |
| Msa0497230 | AT2G40140.2 | 42.686 | 417 | 195 | 11 | 1 | 409 | 1 | 381 | 1.30e-100 | 313 |
| Msa0497230 | AT2G40140.1 | 42.686 | 417 | 195 | 11 | 1 | 409 | 1 | 381 | 1.30e-100 | 313 |
| Msa0497230 | AT3G55980.1 | 44.125 | 383 | 183 | 6 | 40 | 416 | 30 | 387 | 2.58e-99 | 310 |
| Msa0497230 | AT3G55980.2 | 44.125 | 383 | 183 | 6 | 40 | 416 | 97 | 454 | 1.57e-98 | 310 |
| Msa0497230 | AT5G58620.1 | 47.950 | 317 | 161 | 4 | 37 | 352 | 11 | 324 | 5.25e-97 | 304 |
| Msa0497230 | AT5G07500.1 | 60.938 | 128 | 50 | 0 | 219 | 346 | 34 | 161 | 5.99e-52 | 176 |
| Msa0497230 | AT2G25900.2 | 62.617 | 107 | 40 | 0 | 233 | 339 | 86 | 192 | 2.09e-47 | 166 |
| Msa0497230 | AT2G25900.1 | 62.617 | 107 | 40 | 0 | 233 | 339 | 86 | 192 | 2.09e-47 | 166 |
| Msa0497230 | AT4G29190.1 | 42.381 | 210 | 113 | 3 | 178 | 387 | 21 | 222 | 3.48e-45 | 161 |
| Msa0497230 | AT2G19810.1 | 51.020 | 147 | 71 | 1 | 193 | 339 | 35 | 180 | 4.69e-45 | 161 |
| Msa0497230 | AT1G03790.1 | 49.697 | 165 | 69 | 4 | 215 | 369 | 64 | 224 | 3.15e-43 | 157 |
| Msa0497230 | AT5G44260.1 | 56.349 | 126 | 50 | 2 | 215 | 339 | 42 | 163 | 3.16e-41 | 151 |
Find 102 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGTAGGTGAACTTTCT+AGG | 0.217092 | 3_4:+29551547 | None:intergenic |
| CTGTTTCTCACAGCCCCATC+TGG | 0.240591 | 3_4:-29551158 | Msa0497230:CDS |
| GAACAATTTAAGGTAGCTTT+AGG | 0.281412 | 3_4:-29552245 | Msa0497230:CDS |
| ATTTCAACTTCATCTGCTTT+AGG | 0.286929 | 3_4:-29552362 | Msa0497230:CDS |
| TTCTCTTGAGGATGGTAAAA+AGG | 0.304059 | 3_4:+29551586 | None:intergenic |
| CAATCCCTATTTCTAAAATC+AGG | 0.310056 | 3_4:+29551514 | None:intergenic |
| TTCTGTCCTCGAGAACAATT+TGG | 0.311928 | 3_4:+29552162 | None:intergenic |
| ACCAAAGTCATTTCCGTTAA+CGG | 0.357126 | 3_4:+29551063 | None:intergenic |
| TATATGCTGTTTCGTATATC+AGG | 0.367270 | 3_4:+29551688 | None:intergenic |
| CGAGGACAGAACCGCTTTGA+TGG | 0.377143 | 3_4:-29552150 | Msa0497230:CDS |
| TATGCAAGTGGCCTCTTTGA+TGG | 0.379884 | 3_4:-29551208 | Msa0497230:CDS |
| TCAGGAATTGATGGATCAAT+TGG | 0.382999 | 3_4:+29551706 | None:intergenic |
| AGATGAATTTCGCATGTATT+CGG | 0.386064 | 3_4:-29551659 | Msa0497230:CDS |
| AGCAGATGCAGCTGATCTAA+TGG | 0.394681 | 3_4:+29551333 | None:intergenic |
| GTGAAGAGCCTGATATATCT+TGG | 0.396118 | 3_4:-29551000 | Msa0497230:CDS |
| TTCACGACTTCGAGCTTATG+AGG | 0.397514 | 3_4:+29551891 | None:intergenic |
| GCCTGGTGTGTCCGTCAAAA+TGG | 0.397875 | 3_4:-29552191 | Msa0497230:CDS |
| GATTGAACCCAAGATATATC+AGG | 0.401907 | 3_4:+29550992 | None:intergenic |
| CTGATAGTGAACCACGATAA+AGG | 0.407011 | 3_4:+29551278 | None:intergenic |
| ATCTATTGTGTCGATGCTAA+TGG | 0.412751 | 3_4:-29551954 | Msa0497230:CDS |
| ATACTTTCATCTTCAGAGGC+TGG | 0.429494 | 3_4:-29552089 | Msa0497230:CDS |
| TTTCCGTTAACGGACCAATC+AGG | 0.440403 | 3_4:+29551073 | None:intergenic |
| AAACCTGATTGGTCCGTTAA+CGG | 0.446692 | 3_4:-29551076 | Msa0497230:CDS |
| TCTATTGTGTCGATGCTAAT+GGG | 0.448736 | 3_4:-29551953 | Msa0497230:CDS |
| TCAAAGAGGCCACTTGCATA+TGG | 0.450628 | 3_4:+29551211 | None:intergenic |
| TTTCGTATATCAGGAATTGA+TGG | 0.454148 | 3_4:+29551697 | None:intergenic |
| CATTGAAATGGCACCCAGAT+GGG | 0.457541 | 3_4:+29551144 | None:intergenic |
| GCAGCCATGTCCATGACAAT+AGG | 0.459445 | 3_4:+29551310 | None:intergenic |
| CCCATACTGCAAAACCTGAT+TGG | 0.462408 | 3_4:-29551087 | Msa0497230:CDS |
| AGCTTATGAGGAACAACAAT+CGG | 0.476457 | 3_4:+29551903 | None:intergenic |
| ATCGTGCATACACTCATGAT+TGG | 0.479539 | 3_4:-29551618 | Msa0497230:CDS |
| ACAGCTGTGTCGGTCAACTT+TGG | 0.487802 | 3_4:+29551757 | None:intergenic |
| AACAGACCGACTCATTGAAA+TGG | 0.489972 | 3_4:+29551132 | None:intergenic |
| GGAGACAAAGGCTGTGCAAA+AGG | 0.491457 | 3_4:+29551232 | None:intergenic |
| ATTGTTTCCATGCTCAAAAG+AGG | 0.495896 | 3_4:+29551024 | None:intergenic |
| TCCGTTAACGGAAATGACTT+TGG | 0.499356 | 3_4:-29551064 | Msa0497230:CDS |
| AGCCTTGTGCGATACTGATC+TGG | 0.501760 | 3_4:+29551436 | None:intergenic |
| CGCACAAGGCTCTGCAAAGA+GGG | 0.502901 | 3_4:-29551424 | Msa0497230:CDS |
| CTTTGGAGCCACAGAGAGGA+TGG | 0.503116 | 3_4:+29551774 | None:intergenic |
| AGAAGCATGTTCAAGTAAGC+TGG | 0.506422 | 3_4:+29552280 | None:intergenic |
| TGTTAACTCCTGGTCTAAGT+GGG | 0.510881 | 3_4:-29551113 | Msa0497230:CDS |
| GCTGATGAGTGTGTTGATGA+TGG | 0.511857 | 3_4:-29551831 | Msa0497230:intron |
| CTCCTTCGAGCATTCTCTTG+AGG | 0.516869 | 3_4:+29551574 | None:intergenic |
| TGAAGAGCCTGATATATCTT+GGG | 0.518053 | 3_4:-29550999 | Msa0497230:CDS |
| TGTTTCTCACAGCCCCATCT+GGG | 0.518665 | 3_4:-29551157 | Msa0497230:CDS |
| TCAACTTCATCTGCTTTAGG+AGG | 0.524656 | 3_4:-29552359 | Msa0497230:CDS |
| CTGTTAACTCCTGGTCTAAG+TGG | 0.524678 | 3_4:-29551114 | Msa0497230:CDS |
| TGAGTCGGTCTGTTAACTCC+TGG | 0.532706 | 3_4:-29551123 | Msa0497230:CDS |
| AGGCTCTGCAAAGAGGGTAC+TGG | 0.532756 | 3_4:-29551418 | Msa0497230:CDS |
| AGCTGTAGGTGAACTTTCTA+GGG | 0.540690 | 3_4:+29551548 | None:intergenic |
| CTCATGGAGTATTCGAGACC+TGG | 0.542010 | 3_4:-29551465 | Msa0497230:CDS |
| GCTTATACTTTCATCTTCAG+AGG | 0.545789 | 3_4:-29552093 | Msa0497230:CDS |
| TAGAATATCAATACTCCCAC+AGG | 0.547853 | 3_4:+29552118 | None:intergenic |
| TCATTGAAATGGCACCCAGA+TGG | 0.550670 | 3_4:+29551143 | None:intergenic |
| AATCCCTATTTCTAAAATCA+GGG | 0.552152 | 3_4:+29551515 | None:intergenic |
| TGCTCCTATTGTCATGGACA+TGG | 0.553647 | 3_4:-29551314 | Msa0497230:CDS |
| GGAAGAACAATAACATCCAC+TGG | 0.556657 | 3_4:+29551924 | None:intergenic |
| AGAAATAGGGATTGCAGACG+TGG | 0.558271 | 3_4:-29551505 | Msa0497230:CDS |
| CTGTGCTGCATCGAGTGGTA+CGG | 0.559232 | 3_4:-29552024 | Msa0497230:CDS |
| GAAATAGGGATTGCAGACGT+GGG | 0.562982 | 3_4:-29551504 | Msa0497230:CDS |
| TTCGAGCATTCTCTTGAGGA+TGG | 0.565095 | 3_4:+29551578 | None:intergenic |
| AAAGGCTGTGCAAAAGGTGA+TGG | 0.567762 | 3_4:+29551238 | None:intergenic |
| TGCATCTGCTCCTATTGTCA+TGG | 0.581920 | 3_4:-29551320 | Msa0497230:CDS |
| TGTTACATGAAGTTGGCGCC+TGG | 0.582164 | 3_4:-29552208 | Msa0497230:CDS |
| TTGATGGTGGCAGCATCCTG+TGG | 0.583783 | 3_4:-29552134 | Msa0497230:CDS |
| AGGGCATGGCACACAGCTGT+AGG | 0.585274 | 3_4:+29551534 | None:intergenic |
| ATTTCGCATGTATTCGGTCA+AGG | 0.587008 | 3_4:-29551653 | Msa0497230:CDS |
| GCCTCGCTGTTACATGAAGT+TGG | 0.589446 | 3_4:-29552215 | Msa0497230:CDS |
| TGATGGTGGCAGCATCCTGT+GGG | 0.591002 | 3_4:-29552133 | Msa0497230:CDS |
| GATCTAATGGAAGCATGCGA+TGG | 0.592544 | 3_4:+29551346 | None:intergenic |
| CCACTTGCATATGGAGACAA+AGG | 0.595660 | 3_4:+29551220 | None:intergenic |
| GATATGTGTGAATATGCTCA+TGG | 0.598080 | 3_4:-29551481 | Msa0497230:CDS |
| TGGGTGCCATTTCAATGAGT+CGG | 0.598759 | 3_4:-29551138 | Msa0497230:CDS |
| ATTGAAATGGCACCCAGATG+GGG | 0.604994 | 3_4:+29551145 | None:intergenic |
| ATACTGATCTGGATGTAACC+AGG | 0.608023 | 3_4:+29551447 | None:intergenic |
| ATGGGGTCCCCACTTAGACC+AGG | 0.609168 | 3_4:+29551105 | None:intergenic |
| TGCTAATGGGAACCGTCCAG+TGG | 0.621755 | 3_4:-29551940 | Msa0497230:CDS |
| CTATTTCTAAAATCAGGGCA+TGG | 0.621950 | 3_4:+29551520 | None:intergenic |
| AGGGGTCTCCATCCTCTCTG+TGG | 0.623894 | 3_4:-29551782 | Msa0497230:CDS |
| CCTTTGTCTCCATATGCAAG+TGG | 0.626212 | 3_4:-29551220 | Msa0497230:CDS |
| GGACAGAACCGCTTTGATGG+TGG | 0.626702 | 3_4:-29552147 | Msa0497230:CDS |
| TCGCACAAGGCTCTGCAAAG+AGG | 0.634366 | 3_4:-29551425 | Msa0497230:CDS |
| CTTCACTGTGCTGCATCGAG+TGG | 0.634753 | 3_4:-29552029 | Msa0497230:CDS |
| GCTAATTGAAGGATGTGCGG+TGG | 0.634780 | 3_4:-29552404 | None:intergenic |
| GTTAACTCCTGGTCTAAGTG+GGG | 0.638920 | 3_4:-29551112 | Msa0497230:CDS |
| TGCAGCACAGTGAAGAGCAG+TGG | 0.639457 | 3_4:+29552037 | None:intergenic |
| GGGTACTGGTTGTAACCGAA+AGG | 0.643847 | 3_4:-29551404 | Msa0497230:CDS |
| GAACAATAACATCCACTGGA+CGG | 0.649252 | 3_4:+29551928 | None:intergenic |
| TGTAGAACTAACAGCTGTGT+CGG | 0.651255 | 3_4:+29551747 | None:intergenic |
| ATCCAGATCAGTATCGCACA+AGG | 0.651350 | 3_4:-29551438 | Msa0497230:CDS |
| TGTATGCACGATGACAAAGA+AGG | 0.653054 | 3_4:+29551629 | None:intergenic |
| ACATAACCAAATTGTTCTCG+AGG | 0.657807 | 3_4:-29552168 | Msa0497230:CDS |
| GCCGCAACGAGCCTTTATCG+TGG | 0.660050 | 3_4:-29551289 | Msa0497230:CDS |
| ATCCTCAAGAGAATGCTCGA+AGG | 0.663580 | 3_4:-29551576 | Msa0497230:CDS |
| AAATAGGGATTGCAGACGTG+GGG | 0.675359 | 3_4:-29551503 | Msa0497230:CDS |
| TGTGCTGCTGACCATCAAAG+AGG | 0.681128 | 3_4:+29551197 | None:intergenic |
| TCAGCTAATTGAAGGATGTG+CGG | 0.686760 | 3_4:-29552407 | None:intergenic |
| ATACATGCGAAATTCATCTG+TGG | 0.693580 | 3_4:+29551663 | None:intergenic |
| TCAACTTTGGAGCCACAGAG+AGG | 0.718899 | 3_4:+29551770 | None:intergenic |
| ACCACGATAAAGGCTCGTTG+CGG | 0.726358 | 3_4:+29551288 | None:intergenic |
| GGATGCTGCCACCATCAAAG+CGG | 0.735185 | 3_4:+29552139 | None:intergenic |
| GCCAACTTCATGTAACAGCG+AGG | 0.747623 | 3_4:+29552214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGATTTTGAACAATTTA+AGG | - | chr3_4:29551116-29551135 | Msa0497230:CDS | 20.0% |
| !!! | GAATGATTTTGAACAATTTA+AGG | - | chr3_4:29551116-29551135 | Msa0497230:CDS | 20.0% |
| !!! | AATCCCTATTTCTAAAATCA+GGG | + | chr3_4:29551859-29551878 | None:intergenic | 25.0% |
| !!! | AATCCCTATTTCTAAAATCA+GGG | + | chr3_4:29551859-29551878 | None:intergenic | 25.0% |
| ATTTCAACTTCATCTGCTTT+AGG | - | chr3_4:29551009-29551028 | Msa0497230:CDS | 30.0% | |
| ! | GAACAATTTAAGGTAGCTTT+AGG | - | chr3_4:29551126-29551145 | Msa0497230:CDS | 30.0% |
| ! | TTTGGTTATGTCCATTTTGA+CGG | + | chr3_4:29551194-29551213 | None:intergenic | 30.0% |
| TTTCGTATATCAGGAATTGA+TGG | + | chr3_4:29551677-29551696 | None:intergenic | 30.0% | |
| !! | TATATGCTGTTTCGTATATC+AGG | + | chr3_4:29551686-29551705 | None:intergenic | 30.0% |
| AGATGAATTTCGCATGTATT+CGG | - | chr3_4:29551712-29551731 | Msa0497230:CDS | 30.0% | |
| !! | ATGCCCTGATTTTAGAAATA+GGG | - | chr3_4:29551853-29551872 | Msa0497230:CDS | 30.0% |
| !! | CAATCCCTATTTCTAAAATC+AGG | + | chr3_4:29551860-29551879 | None:intergenic | 30.0% |
| ATTTCAACTTCATCTGCTTT+AGG | - | chr3_4:29551009-29551028 | Msa0497230:CDS | 30.0% | |
| ! | GAACAATTTAAGGTAGCTTT+AGG | - | chr3_4:29551126-29551145 | Msa0497230:CDS | 30.0% |
| ! | TTTGGTTATGTCCATTTTGA+CGG | + | chr3_4:29551194-29551213 | None:intergenic | 30.0% |
| TTTCGTATATCAGGAATTGA+TGG | + | chr3_4:29551677-29551696 | None:intergenic | 30.0% | |
| !! | TATATGCTGTTTCGTATATC+AGG | + | chr3_4:29551686-29551705 | None:intergenic | 30.0% |
| AGATGAATTTCGCATGTATT+CGG | - | chr3_4:29551712-29551731 | Msa0497230:CDS | 30.0% | |
| !! | ATGCCCTGATTTTAGAAATA+GGG | - | chr3_4:29551853-29551872 | Msa0497230:CDS | 30.0% |
| !! | CAATCCCTATTTCTAAAATC+AGG | + | chr3_4:29551860-29551879 | None:intergenic | 30.0% |
| ACATAACCAAATTGTTCTCG+AGG | - | chr3_4:29551203-29551222 | Msa0497230:CDS | 35.0% | |
| TAGAATATCAATACTCCCAC+AGG | + | chr3_4:29551256-29551275 | None:intergenic | 35.0% | |
| GCTTATACTTTCATCTTCAG+AGG | - | chr3_4:29551278-29551297 | Msa0497230:CDS | 35.0% | |
| !! | GTAAAACTGCTTTTATCAGC+TGG | - | chr3_4:29551387-29551406 | Msa0497230:CDS | 35.0% |
| ! | ATCTATTGTGTCGATGCTAA+TGG | - | chr3_4:29551417-29551436 | Msa0497230:CDS | 35.0% |
| ! | TCTATTGTGTCGATGCTAAT+GGG | - | chr3_4:29551418-29551437 | Msa0497230:CDS | 35.0% |
| AGCTTATGAGGAACAACAAT+CGG | + | chr3_4:29551471-29551490 | None:intergenic | 35.0% | |
| ! | TCAGGAATTGATGGATCAAT+TGG | + | chr3_4:29551668-29551687 | None:intergenic | 35.0% |
| ATACATGCGAAATTCATCTG+TGG | + | chr3_4:29551711-29551730 | None:intergenic | 35.0% | |
| TTCTCTTGAGGATGGTAAAA+AGG | + | chr3_4:29551788-29551807 | None:intergenic | 35.0% | |
| !! | CTATTTCTAAAATCAGGGCA+TGG | + | chr3_4:29551854-29551873 | None:intergenic | 35.0% |
| !! | CATGCCCTGATTTTAGAAAT+AGG | - | chr3_4:29551852-29551871 | Msa0497230:CDS | 35.0% |
| GATATGTGTGAATATGCTCA+TGG | - | chr3_4:29551890-29551909 | Msa0497230:CDS | 35.0% | |
| ACCAAAGTCATTTCCGTTAA+CGG | + | chr3_4:29552311-29552330 | None:intergenic | 35.0% | |
| ! | AGATATACCTCTTTTGAGCA+TGG | - | chr3_4:29552340-29552359 | Msa0497230:CDS | 35.0% |
| ATTGTTTCCATGCTCAAAAG+AGG | + | chr3_4:29552350-29552369 | None:intergenic | 35.0% | |
| ! | TCTTTTGAGCATGGAAACAA+TGG | - | chr3_4:29552349-29552368 | Msa0497230:CDS | 35.0% |
| TGAAGAGCCTGATATATCTT+GGG | - | chr3_4:29552372-29552391 | Msa0497230:CDS | 35.0% | |
| GATTGAACCCAAGATATATC+AGG | + | chr3_4:29552382-29552401 | None:intergenic | 35.0% | |
| ACATAACCAAATTGTTCTCG+AGG | - | chr3_4:29551203-29551222 | Msa0497230:CDS | 35.0% | |
| TAGAATATCAATACTCCCAC+AGG | + | chr3_4:29551256-29551275 | None:intergenic | 35.0% | |
| GCTTATACTTTCATCTTCAG+AGG | - | chr3_4:29551278-29551297 | Msa0497230:CDS | 35.0% | |
| !! | GTAAAACTGCTTTTATCAGC+TGG | - | chr3_4:29551387-29551406 | Msa0497230:CDS | 35.0% |
| ! | ATCTATTGTGTCGATGCTAA+TGG | - | chr3_4:29551417-29551436 | Msa0497230:CDS | 35.0% |
| ! | TCTATTGTGTCGATGCTAAT+GGG | - | chr3_4:29551418-29551437 | Msa0497230:CDS | 35.0% |
| AGCTTATGAGGAACAACAAT+CGG | + | chr3_4:29551471-29551490 | None:intergenic | 35.0% | |
| ! | TCAGGAATTGATGGATCAAT+TGG | + | chr3_4:29551668-29551687 | None:intergenic | 35.0% |
| ATACATGCGAAATTCATCTG+TGG | + | chr3_4:29551711-29551730 | None:intergenic | 35.0% | |
| TTCTCTTGAGGATGGTAAAA+AGG | + | chr3_4:29551788-29551807 | None:intergenic | 35.0% | |
| !! | CTATTTCTAAAATCAGGGCA+TGG | + | chr3_4:29551854-29551873 | None:intergenic | 35.0% |
| !! | CATGCCCTGATTTTAGAAAT+AGG | - | chr3_4:29551852-29551871 | Msa0497230:CDS | 35.0% |
| GATATGTGTGAATATGCTCA+TGG | - | chr3_4:29551890-29551909 | Msa0497230:CDS | 35.0% | |
| ACCAAAGTCATTTCCGTTAA+CGG | + | chr3_4:29552311-29552330 | None:intergenic | 35.0% | |
| ! | AGATATACCTCTTTTGAGCA+TGG | - | chr3_4:29552340-29552359 | Msa0497230:CDS | 35.0% |
| ATTGTTTCCATGCTCAAAAG+AGG | + | chr3_4:29552350-29552369 | None:intergenic | 35.0% | |
| ! | TCTTTTGAGCATGGAAACAA+TGG | - | chr3_4:29552349-29552368 | Msa0497230:CDS | 35.0% |
| TGAAGAGCCTGATATATCTT+GGG | - | chr3_4:29552372-29552391 | Msa0497230:CDS | 35.0% | |
| GATTGAACCCAAGATATATC+AGG | + | chr3_4:29552382-29552401 | None:intergenic | 35.0% | |
| ! | TCAACTTCATCTGCTTTAGG+AGG | - | chr3_4:29551012-29551031 | Msa0497230:CDS | 40.0% |
| ! | AGAAGCATGTTCAAGTAAGC+TGG | + | chr3_4:29551094-29551113 | None:intergenic | 40.0% |
| TTCTGTCCTCGAGAACAATT+TGG | + | chr3_4:29551212-29551231 | None:intergenic | 40.0% | |
| ATACTTTCATCTTCAGAGGC+TGG | - | chr3_4:29551282-29551301 | Msa0497230:CDS | 40.0% | |
| ! | GCTGGTGTAAATTTTTCGTG+TGG | - | chr3_4:29551300-29551319 | Msa0497230:CDS | 40.0% |
| GAACAATAACATCCACTGGA+CGG | + | chr3_4:29551446-29551465 | None:intergenic | 40.0% | |
| GGAAGAACAATAACATCCAC+TGG | + | chr3_4:29551450-29551469 | None:intergenic | 40.0% | |
| TGTAGAACTAACAGCTGTGT+CGG | + | chr3_4:29551627-29551646 | None:intergenic | 40.0% | |
| ATTTCGCATGTATTCGGTCA+AGG | - | chr3_4:29551718-29551737 | Msa0497230:CDS | 40.0% | |
| TGTATGCACGATGACAAAGA+AGG | + | chr3_4:29551745-29551764 | None:intergenic | 40.0% | |
| ATCGTGCATACACTCATGAT+TGG | - | chr3_4:29551753-29551772 | Msa0497230:CDS | 40.0% | |
| AGGATGGTAAAAAGGACACT+CGG | + | chr3_4:29551780-29551799 | None:intergenic | 40.0% | |
| AGCTGTAGGTGAACTTTCTA+GGG | + | chr3_4:29551826-29551845 | None:intergenic | 40.0% | |
| ATACTGATCTGGATGTAACC+AGG | + | chr3_4:29551927-29551946 | None:intergenic | 40.0% | |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | chr3_4:29551985-29552004 | None:intergenic | 40.0% |
| ! | CTGATAGTGAACCACGATAA+AGG | + | chr3_4:29552096-29552115 | None:intergenic | 40.0% |
| ! | AACAGACCGACTCATTGAAA+TGG | + | chr3_4:29552242-29552261 | None:intergenic | 40.0% |
| TGTTAACTCCTGGTCTAAGT+GGG | - | chr3_4:29552258-29552277 | Msa0497230:CDS | 40.0% | |
| ! | CAATCAGGTTTTGCAGTATG+GGG | + | chr3_4:29552286-29552305 | None:intergenic | 40.0% |
| ! | CCAATCAGGTTTTGCAGTAT+GGG | + | chr3_4:29552287-29552306 | None:intergenic | 40.0% |
| ! | ACCAATCAGGTTTTGCAGTA+TGG | + | chr3_4:29552288-29552307 | None:intergenic | 40.0% |
| ! | AAACCTGATTGGTCCGTTAA+CGG | - | chr3_4:29552295-29552314 | Msa0497230:CDS | 40.0% |
| TCCGTTAACGGAAATGACTT+TGG | - | chr3_4:29552307-29552326 | Msa0497230:CDS | 40.0% | |
| GTGAAGAGCCTGATATATCT+TGG | - | chr3_4:29552371-29552390 | Msa0497230:CDS | 40.0% | |
| ! | TCAACTTCATCTGCTTTAGG+AGG | - | chr3_4:29551012-29551031 | Msa0497230:CDS | 40.0% |
| ! | AGAAGCATGTTCAAGTAAGC+TGG | + | chr3_4:29551094-29551113 | None:intergenic | 40.0% |
| TTCTGTCCTCGAGAACAATT+TGG | + | chr3_4:29551212-29551231 | None:intergenic | 40.0% | |
| ATACTTTCATCTTCAGAGGC+TGG | - | chr3_4:29551282-29551301 | Msa0497230:CDS | 40.0% | |
| ! | GCTGGTGTAAATTTTTCGTG+TGG | - | chr3_4:29551300-29551319 | Msa0497230:CDS | 40.0% |
| GAACAATAACATCCACTGGA+CGG | + | chr3_4:29551446-29551465 | None:intergenic | 40.0% | |
| GGAAGAACAATAACATCCAC+TGG | + | chr3_4:29551450-29551469 | None:intergenic | 40.0% | |
| TGTAGAACTAACAGCTGTGT+CGG | + | chr3_4:29551627-29551646 | None:intergenic | 40.0% | |
| ATTTCGCATGTATTCGGTCA+AGG | - | chr3_4:29551718-29551737 | Msa0497230:CDS | 40.0% | |
| TGTATGCACGATGACAAAGA+AGG | + | chr3_4:29551745-29551764 | None:intergenic | 40.0% | |
| ATCGTGCATACACTCATGAT+TGG | - | chr3_4:29551753-29551772 | Msa0497230:CDS | 40.0% | |
| AGGATGGTAAAAAGGACACT+CGG | + | chr3_4:29551780-29551799 | None:intergenic | 40.0% | |
| AGCTGTAGGTGAACTTTCTA+GGG | + | chr3_4:29551826-29551845 | None:intergenic | 40.0% | |
| ATACTGATCTGGATGTAACC+AGG | + | chr3_4:29551927-29551946 | None:intergenic | 40.0% | |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | chr3_4:29551985-29552004 | None:intergenic | 40.0% |
| ! | CTGATAGTGAACCACGATAA+AGG | + | chr3_4:29552096-29552115 | None:intergenic | 40.0% |
| ! | AACAGACCGACTCATTGAAA+TGG | + | chr3_4:29552242-29552261 | None:intergenic | 40.0% |
| TGTTAACTCCTGGTCTAAGT+GGG | - | chr3_4:29552258-29552277 | Msa0497230:CDS | 40.0% | |
| ! | CAATCAGGTTTTGCAGTATG+GGG | + | chr3_4:29552286-29552305 | None:intergenic | 40.0% |
| ! | CCAATCAGGTTTTGCAGTAT+GGG | + | chr3_4:29552287-29552306 | None:intergenic | 40.0% |
| ! | ACCAATCAGGTTTTGCAGTA+TGG | + | chr3_4:29552288-29552307 | None:intergenic | 40.0% |
| ! | AAACCTGATTGGTCCGTTAA+CGG | - | chr3_4:29552295-29552314 | Msa0497230:CDS | 40.0% |
| TCCGTTAACGGAAATGACTT+TGG | - | chr3_4:29552307-29552326 | Msa0497230:CDS | 40.0% | |
| GTGAAGAGCCTGATATATCT+TGG | - | chr3_4:29552371-29552390 | Msa0497230:CDS | 40.0% | |
| TTCACGACTTCGAGCTTATG+AGG | + | chr3_4:29551483-29551502 | None:intergenic | 45.0% | |
| ! | GCTGATGAGTGTGTTGATGA+TGG | - | chr3_4:29551540-29551559 | Msa0497230:CDS | 45.0% |
| TTCGAGCATTCTCTTGAGGA+TGG | + | chr3_4:29551796-29551815 | None:intergenic | 45.0% | |
| ATCCTCAAGAGAATGCTCGA+AGG | - | chr3_4:29551795-29551814 | Msa0497230:intron | 45.0% | |
| CAGCTGTAGGTGAACTTTCT+AGG | + | chr3_4:29551827-29551846 | None:intergenic | 45.0% | |
| AGAAATAGGGATTGCAGACG+TGG | - | chr3_4:29551866-29551885 | Msa0497230:CDS | 45.0% | |
| GAAATAGGGATTGCAGACGT+GGG | - | chr3_4:29551867-29551886 | Msa0497230:CDS | 45.0% | |
| AAATAGGGATTGCAGACGTG+GGG | - | chr3_4:29551868-29551887 | Msa0497230:CDS | 45.0% | |
| ATCCAGATCAGTATCGCACA+AGG | - | chr3_4:29551933-29551952 | Msa0497230:CDS | 45.0% | |
| ! | GATCTAATGGAAGCATGCGA+TGG | + | chr3_4:29552028-29552047 | None:intergenic | 45.0% |
| AGCAGATGCAGCTGATCTAA+TGG | + | chr3_4:29552041-29552060 | None:intergenic | 45.0% | |
| TGCATCTGCTCCTATTGTCA+TGG | - | chr3_4:29552051-29552070 | Msa0497230:CDS | 45.0% | |
| TGCTCCTATTGTCATGGACA+TGG | - | chr3_4:29552057-29552076 | Msa0497230:CDS | 45.0% | |
| AAAGGCTGTGCAAAAGGTGA+TGG | + | chr3_4:29552136-29552155 | None:intergenic | 45.0% | |
| CCACTTGCATATGGAGACAA+AGG | + | chr3_4:29552154-29552173 | None:intergenic | 45.0% | |
| CCTTTGTCTCCATATGCAAG+TGG | - | chr3_4:29552151-29552170 | Msa0497230:CDS | 45.0% | |
| TCAAAGAGGCCACTTGCATA+TGG | + | chr3_4:29552163-29552182 | None:intergenic | 45.0% | |
| TATGCAAGTGGCCTCTTTGA+TGG | - | chr3_4:29552163-29552182 | Msa0497230:CDS | 45.0% | |
| ATTGAAATGGCACCCAGATG+GGG | + | chr3_4:29552229-29552248 | None:intergenic | 45.0% | |
| CATTGAAATGGCACCCAGAT+GGG | + | chr3_4:29552230-29552249 | None:intergenic | 45.0% | |
| TCATTGAAATGGCACCCAGA+TGG | + | chr3_4:29552231-29552250 | None:intergenic | 45.0% | |
| !! | TGGGTGCCATTTCAATGAGT+CGG | - | chr3_4:29552233-29552252 | Msa0497230:CDS | 45.0% |
| CTGTTAACTCCTGGTCTAAG+TGG | - | chr3_4:29552257-29552276 | Msa0497230:CDS | 45.0% | |
| GTTAACTCCTGGTCTAAGTG+GGG | - | chr3_4:29552259-29552278 | Msa0497230:CDS | 45.0% | |
| CCCATACTGCAAAACCTGAT+TGG | - | chr3_4:29552284-29552303 | Msa0497230:CDS | 45.0% | |
| ! | TTTCCGTTAACGGACCAATC+AGG | + | chr3_4:29552301-29552320 | None:intergenic | 45.0% |
| TTCACGACTTCGAGCTTATG+AGG | + | chr3_4:29551483-29551502 | None:intergenic | 45.0% | |
| ! | GCTGATGAGTGTGTTGATGA+TGG | - | chr3_4:29551540-29551559 | Msa0497230:CDS | 45.0% |
| TTCGAGCATTCTCTTGAGGA+TGG | + | chr3_4:29551796-29551815 | None:intergenic | 45.0% | |
| ATCCTCAAGAGAATGCTCGA+AGG | - | chr3_4:29551795-29551814 | Msa0497230:intron | 45.0% | |
| CAGCTGTAGGTGAACTTTCT+AGG | + | chr3_4:29551827-29551846 | None:intergenic | 45.0% | |
| AGAAATAGGGATTGCAGACG+TGG | - | chr3_4:29551866-29551885 | Msa0497230:CDS | 45.0% | |
| GAAATAGGGATTGCAGACGT+GGG | - | chr3_4:29551867-29551886 | Msa0497230:CDS | 45.0% | |
| AAATAGGGATTGCAGACGTG+GGG | - | chr3_4:29551868-29551887 | Msa0497230:CDS | 45.0% | |
| ATCCAGATCAGTATCGCACA+AGG | - | chr3_4:29551933-29551952 | Msa0497230:CDS | 45.0% | |
| ! | GATCTAATGGAAGCATGCGA+TGG | + | chr3_4:29552028-29552047 | None:intergenic | 45.0% |
| AGCAGATGCAGCTGATCTAA+TGG | + | chr3_4:29552041-29552060 | None:intergenic | 45.0% | |
| TGCATCTGCTCCTATTGTCA+TGG | - | chr3_4:29552051-29552070 | Msa0497230:CDS | 45.0% | |
| TGCTCCTATTGTCATGGACA+TGG | - | chr3_4:29552057-29552076 | Msa0497230:CDS | 45.0% | |
| AAAGGCTGTGCAAAAGGTGA+TGG | + | chr3_4:29552136-29552155 | None:intergenic | 45.0% | |
| CCACTTGCATATGGAGACAA+AGG | + | chr3_4:29552154-29552173 | None:intergenic | 45.0% | |
| CCTTTGTCTCCATATGCAAG+TGG | - | chr3_4:29552151-29552170 | Msa0497230:CDS | 45.0% | |
| TCAAAGAGGCCACTTGCATA+TGG | + | chr3_4:29552163-29552182 | None:intergenic | 45.0% | |
| TATGCAAGTGGCCTCTTTGA+TGG | - | chr3_4:29552163-29552182 | Msa0497230:CDS | 45.0% | |
| ATTGAAATGGCACCCAGATG+GGG | + | chr3_4:29552229-29552248 | None:intergenic | 45.0% | |
| CATTGAAATGGCACCCAGAT+GGG | + | chr3_4:29552230-29552249 | None:intergenic | 45.0% | |
| TCATTGAAATGGCACCCAGA+TGG | + | chr3_4:29552231-29552250 | None:intergenic | 45.0% | |
| !! | TGGGTGCCATTTCAATGAGT+CGG | - | chr3_4:29552233-29552252 | Msa0497230:CDS | 45.0% |
| CTGTTAACTCCTGGTCTAAG+TGG | - | chr3_4:29552257-29552276 | Msa0497230:CDS | 45.0% | |
| GTTAACTCCTGGTCTAAGTG+GGG | - | chr3_4:29552259-29552278 | Msa0497230:CDS | 45.0% | |
| CCCATACTGCAAAACCTGAT+TGG | - | chr3_4:29552284-29552303 | Msa0497230:CDS | 45.0% | |
| ! | TTTCCGTTAACGGACCAATC+AGG | + | chr3_4:29552301-29552320 | None:intergenic | 45.0% |
| GCCTCGCTGTTACATGAAGT+TGG | - | chr3_4:29551156-29551175 | Msa0497230:CDS | 50.0% | |
| GCCAACTTCATGTAACAGCG+AGG | + | chr3_4:29551160-29551179 | None:intergenic | 50.0% | |
| TGTTACATGAAGTTGGCGCC+TGG | - | chr3_4:29551163-29551182 | Msa0497230:CDS | 50.0% | |
| !! | TCCATTTTGACGGACACACC+AGG | + | chr3_4:29551184-29551203 | None:intergenic | 50.0% |
| TCCGCTGTCATCGTGTGAAA+AGG | - | chr3_4:29551569-29551588 | Msa0497230:CDS | 50.0% | |
| ! | CCCTTTTCACACGATGACAG+CGG | + | chr3_4:29551573-29551592 | None:intergenic | 50.0% |
| CCGCTGTCATCGTGTGAAAA+GGG | - | chr3_4:29551570-29551589 | Msa0497230:CDS | 50.0% | |
| CGCTGTCATCGTGTGAAAAG+GGG | - | chr3_4:29551571-29551590 | Msa0497230:CDS | 50.0% | |
| !! | TCAACTTTGGAGCCACAGAG+AGG | + | chr3_4:29551604-29551623 | None:intergenic | 50.0% |
| ! | ACAGCTGTGTCGGTCAACTT+TGG | + | chr3_4:29551617-29551636 | None:intergenic | 50.0% |
| CTCCTTCGAGCATTCTCTTG+AGG | + | chr3_4:29551800-29551819 | None:intergenic | 50.0% | |
| ! | CTCATGGAGTATTCGAGACC+TGG | - | chr3_4:29551906-29551925 | Msa0497230:CDS | 50.0% |
| ! | AGCCTTGTGCGATACTGATC+TGG | + | chr3_4:29551938-29551957 | None:intergenic | 50.0% |
| !! | GGGTACTGGTTGTAACCGAA+AGG | - | chr3_4:29551967-29551986 | Msa0497230:CDS | 50.0% |
| GCAGCCATGTCCATGACAAT+AGG | + | chr3_4:29552064-29552083 | None:intergenic | 50.0% | |
| ACCACGATAAAGGCTCGTTG+CGG | + | chr3_4:29552086-29552105 | None:intergenic | 50.0% | |
| GGAGACAAAGGCTGTGCAAA+AGG | + | chr3_4:29552142-29552161 | None:intergenic | 50.0% | |
| ! | TGTGCTGCTGACCATCAAAG+AGG | + | chr3_4:29552177-29552196 | None:intergenic | 50.0% |
| TGTTTCTCACAGCCCCATCT+GGG | - | chr3_4:29552214-29552233 | Msa0497230:CDS | 50.0% | |
| TGAGTCGGTCTGTTAACTCC+TGG | - | chr3_4:29552248-29552267 | Msa0497230:CDS | 50.0% | |
| GCCTCGCTGTTACATGAAGT+TGG | - | chr3_4:29551156-29551175 | Msa0497230:CDS | 50.0% | |
| GCCAACTTCATGTAACAGCG+AGG | + | chr3_4:29551160-29551179 | None:intergenic | 50.0% | |
| TGTTACATGAAGTTGGCGCC+TGG | - | chr3_4:29551163-29551182 | Msa0497230:CDS | 50.0% | |
| !! | TCCATTTTGACGGACACACC+AGG | + | chr3_4:29551184-29551203 | None:intergenic | 50.0% |
| TCCGCTGTCATCGTGTGAAA+AGG | - | chr3_4:29551569-29551588 | Msa0497230:CDS | 50.0% | |
| ! | CCCTTTTCACACGATGACAG+CGG | + | chr3_4:29551573-29551592 | None:intergenic | 50.0% |
| CCGCTGTCATCGTGTGAAAA+GGG | - | chr3_4:29551570-29551589 | Msa0497230:CDS | 50.0% | |
| CGCTGTCATCGTGTGAAAAG+GGG | - | chr3_4:29551571-29551590 | Msa0497230:CDS | 50.0% | |
| !! | TCAACTTTGGAGCCACAGAG+AGG | + | chr3_4:29551604-29551623 | None:intergenic | 50.0% |
| ! | ACAGCTGTGTCGGTCAACTT+TGG | + | chr3_4:29551617-29551636 | None:intergenic | 50.0% |
| CTCCTTCGAGCATTCTCTTG+AGG | + | chr3_4:29551800-29551819 | None:intergenic | 50.0% | |
| ! | CTCATGGAGTATTCGAGACC+TGG | - | chr3_4:29551906-29551925 | Msa0497230:CDS | 50.0% |
| ! | AGCCTTGTGCGATACTGATC+TGG | + | chr3_4:29551938-29551957 | None:intergenic | 50.0% |
| !! | GGGTACTGGTTGTAACCGAA+AGG | - | chr3_4:29551967-29551986 | Msa0497230:CDS | 50.0% |
| GCAGCCATGTCCATGACAAT+AGG | + | chr3_4:29552064-29552083 | None:intergenic | 50.0% | |
| ACCACGATAAAGGCTCGTTG+CGG | + | chr3_4:29552086-29552105 | None:intergenic | 50.0% | |
| GGAGACAAAGGCTGTGCAAA+AGG | + | chr3_4:29552142-29552161 | None:intergenic | 50.0% | |
| ! | TGTGCTGCTGACCATCAAAG+AGG | + | chr3_4:29552177-29552196 | None:intergenic | 50.0% |
| TGTTTCTCACAGCCCCATCT+GGG | - | chr3_4:29552214-29552233 | Msa0497230:CDS | 50.0% | |
| TGAGTCGGTCTGTTAACTCC+TGG | - | chr3_4:29552248-29552267 | Msa0497230:CDS | 50.0% | |
| GCCTGGTGTGTCCGTCAAAA+TGG | - | chr3_4:29551180-29551199 | Msa0497230:CDS | 55.0% | |
| CGAGGACAGAACCGCTTTGA+TGG | - | chr3_4:29551221-29551240 | Msa0497230:CDS | 55.0% | |
| GGACAGAACCGCTTTGATGG+TGG | - | chr3_4:29551224-29551243 | Msa0497230:CDS | 55.0% | |
| GGATGCTGCCACCATCAAAG+CGG | + | chr3_4:29551235-29551254 | None:intergenic | 55.0% | |
| !! | TTGATGGTGGCAGCATCCTG+TGG | - | chr3_4:29551237-29551256 | Msa0497230:CDS | 55.0% |
| !! | TGATGGTGGCAGCATCCTGT+GGG | - | chr3_4:29551238-29551257 | Msa0497230:CDS | 55.0% |
| TGCAGCACAGTGAAGAGCAG+TGG | + | chr3_4:29551337-29551356 | None:intergenic | 55.0% | |
| CTTCACTGTGCTGCATCGAG+TGG | - | chr3_4:29551342-29551361 | Msa0497230:CDS | 55.0% | |
| CTGTGCTGCATCGAGTGGTA+CGG | - | chr3_4:29551347-29551366 | Msa0497230:CDS | 55.0% | |
| TGCTAATGGGAACCGTCCAG+TGG | - | chr3_4:29551431-29551450 | Msa0497230:CDS | 55.0% | |
| !! | CTTTGGAGCCACAGAGAGGA+TGG | + | chr3_4:29551600-29551619 | None:intergenic | 55.0% |
| TCGCACAAGGCTCTGCAAAG+AGG | - | chr3_4:29551946-29551965 | Msa0497230:CDS | 55.0% | |
| CGCACAAGGCTCTGCAAAGA+GGG | - | chr3_4:29551947-29551966 | Msa0497230:CDS | 55.0% | |
| ! | AGGCTCTGCAAAGAGGGTAC+TGG | - | chr3_4:29551953-29551972 | Msa0497230:CDS | 55.0% |
| ! | CTGTTTCTCACAGCCCCATC+TGG | - | chr3_4:29552213-29552232 | Msa0497230:CDS | 55.0% |
| GCCTGGTGTGTCCGTCAAAA+TGG | - | chr3_4:29551180-29551199 | Msa0497230:CDS | 55.0% | |
| CGAGGACAGAACCGCTTTGA+TGG | - | chr3_4:29551221-29551240 | Msa0497230:CDS | 55.0% | |
| GGACAGAACCGCTTTGATGG+TGG | - | chr3_4:29551224-29551243 | Msa0497230:CDS | 55.0% | |
| GGATGCTGCCACCATCAAAG+CGG | + | chr3_4:29551235-29551254 | None:intergenic | 55.0% | |
| !! | TTGATGGTGGCAGCATCCTG+TGG | - | chr3_4:29551237-29551256 | Msa0497230:CDS | 55.0% |
| !! | TGATGGTGGCAGCATCCTGT+GGG | - | chr3_4:29551238-29551257 | Msa0497230:CDS | 55.0% |
| TGCAGCACAGTGAAGAGCAG+TGG | + | chr3_4:29551337-29551356 | None:intergenic | 55.0% | |
| CTTCACTGTGCTGCATCGAG+TGG | - | chr3_4:29551342-29551361 | Msa0497230:CDS | 55.0% | |
| CTGTGCTGCATCGAGTGGTA+CGG | - | chr3_4:29551347-29551366 | Msa0497230:CDS | 55.0% | |
| TGCTAATGGGAACCGTCCAG+TGG | - | chr3_4:29551431-29551450 | Msa0497230:CDS | 55.0% | |
| !! | CTTTGGAGCCACAGAGAGGA+TGG | + | chr3_4:29551600-29551619 | None:intergenic | 55.0% |
| TCGCACAAGGCTCTGCAAAG+AGG | - | chr3_4:29551946-29551965 | Msa0497230:CDS | 55.0% | |
| CGCACAAGGCTCTGCAAAGA+GGG | - | chr3_4:29551947-29551966 | Msa0497230:CDS | 55.0% | |
| ! | AGGCTCTGCAAAGAGGGTAC+TGG | - | chr3_4:29551953-29551972 | Msa0497230:CDS | 55.0% |
| ! | CTGTTTCTCACAGCCCCATC+TGG | - | chr3_4:29552213-29552232 | Msa0497230:CDS | 55.0% |
| AGGGGTCTCCATCCTCTCTG+TGG | - | chr3_4:29551589-29551608 | Msa0497230:CDS | 60.0% | |
| AGGGCATGGCACACAGCTGT+AGG | + | chr3_4:29551840-29551859 | None:intergenic | 60.0% | |
| GCCGCAACGAGCCTTTATCG+TGG | - | chr3_4:29552082-29552101 | Msa0497230:CDS | 60.0% | |
| ATGGGGTCCCCACTTAGACC+AGG | + | chr3_4:29552269-29552288 | None:intergenic | 60.0% | |
| AGGGGTCTCCATCCTCTCTG+TGG | - | chr3_4:29551589-29551608 | Msa0497230:CDS | 60.0% | |
| AGGGCATGGCACACAGCTGT+AGG | + | chr3_4:29551840-29551859 | None:intergenic | 60.0% | |
| GCCGCAACGAGCCTTTATCG+TGG | - | chr3_4:29552082-29552101 | Msa0497230:CDS | 60.0% | |
| ATGGGGTCCCCACTTAGACC+AGG | + | chr3_4:29552269-29552288 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 29550979 | 29552414 | 29550979 | ID=Msa0497230;Name=Msa0497230 |
| chr3_4 | mRNA | 29550979 | 29552414 | 29550979 | ID=Msa0497230-mRNA-1;Parent=Msa0497230;Name=Msa0497230-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|468 |
| chr3_4 | exon | 29551832 | 29552414 | 29551832 | ID=Msa0497230-mRNA-1:exon:6767;Parent=Msa0497230-mRNA-1 |
| chr3_4 | exon | 29550979 | 29551802 | 29550979 | ID=Msa0497230-mRNA-1:exon:6766;Parent=Msa0497230-mRNA-1 |
| chr3_4 | CDS | 29551832 | 29552414 | 29551832 | ID=Msa0497230-mRNA-1:cds;Parent=Msa0497230-mRNA-1 |
| chr3_4 | CDS | 29550979 | 29551802 | 29550979 | ID=Msa0497230-mRNA-1:cds;Parent=Msa0497230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
