Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498300 | QJU69413.1 | 99.065 | 214 | 1 | 1 | 1 | 213 | 1 | 214 | 3.74e-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498300 | sp|A0A0P0X0C0|MPH1_ORYSJ | 62.687 | 67 | 25 | 0 | 7 | 73 | 5 | 71 | 3.56e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498300 | A0A6M5K8M6 | 99.065 | 214 | 1 | 1 | 1 | 213 | 1 | 214 | 1.79e-154 | 436 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0498300 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498300 | MtrunA17_Chr3g0095611 | 95.305 | 213 | 8 | 2 | 1 | 213 | 1 | 211 | 1.67e-150 | 416 |
| Msa0498300 | MtrunA17_Chr8g0379121 | 55.952 | 84 | 32 | 2 | 4 | 83 | 96 | 178 | 1.60e-25 | 102 |
| Msa0498300 | MtrunA17_Chr1g0162931 | 63.235 | 68 | 25 | 0 | 11 | 78 | 10 | 77 | 2.35e-25 | 100 |
| Msa0498300 | MtrunA17_Chr1g0210911 | 59.420 | 69 | 28 | 0 | 9 | 77 | 12 | 80 | 1.10e-24 | 99.0 |
| Msa0498300 | MtrunA17_Chr2g0320231 | 62.687 | 67 | 25 | 0 | 9 | 75 | 87 | 153 | 6.67e-24 | 97.4 |
| Msa0498300 | MtrunA17_Chr7g0243081 | 54.667 | 75 | 34 | 0 | 1 | 75 | 53 | 127 | 3.98e-23 | 95.1 |
| Msa0498300 | MtrunA17_Chr2g0288601 | 63.333 | 60 | 22 | 0 | 11 | 70 | 63 | 122 | 2.48e-22 | 88.2 |
| Msa0498300 | MtrunA17_Chr2g0283951 | 55.128 | 78 | 31 | 1 | 2 | 75 | 72 | 149 | 6.68e-22 | 92.0 |
| Msa0498300 | MtrunA17_Chr1g0190301 | 54.167 | 72 | 32 | 1 | 4 | 75 | 161 | 231 | 5.70e-20 | 87.0 |
| Msa0498300 | MtrunA17_Chr5g0417521 | 41.176 | 119 | 62 | 4 | 19 | 137 | 15 | 125 | 3.63e-19 | 84.3 |
| Msa0498300 | MtrunA17_Chr7g0274471 | 57.895 | 57 | 24 | 0 | 19 | 75 | 218 | 274 | 8.77e-19 | 84.0 |
| Msa0498300 | MtrunA17_Chr7g0261911 | 56.140 | 57 | 25 | 0 | 19 | 75 | 262 | 318 | 1.06e-18 | 83.6 |
| Msa0498300 | MtrunA17_Chr1g0154261 | 48.000 | 75 | 37 | 1 | 1 | 75 | 110 | 182 | 5.73e-18 | 80.5 |
| Msa0498300 | MtrunA17_Chr6g0479431 | 56.897 | 58 | 25 | 0 | 18 | 75 | 201 | 258 | 1.19e-17 | 80.1 |
| Msa0498300 | MtrunA17_Chr8g0366281 | 58.621 | 58 | 24 | 0 | 18 | 75 | 172 | 229 | 1.32e-17 | 80.1 |
| Msa0498300 | MtrunA17_Chr6g0461641 | 49.333 | 75 | 30 | 2 | 19 | 85 | 42 | 116 | 2.36e-17 | 79.7 |
| Msa0498300 | MtrunA17_Chr5g0410741 | 56.897 | 58 | 25 | 0 | 18 | 75 | 218 | 275 | 3.39e-17 | 79.0 |
| Msa0498300 | MtrunA17_Chr3g0109981 | 56.897 | 58 | 25 | 0 | 18 | 75 | 273 | 330 | 4.07e-17 | 79.0 |
| Msa0498300 | MtrunA17_Chr5g0409731 | 48.611 | 72 | 30 | 1 | 8 | 72 | 7 | 78 | 2.02e-16 | 75.9 |
| Msa0498300 | MtrunA17_Chr8g0356501 | 61.111 | 54 | 21 | 0 | 19 | 72 | 37 | 90 | 2.11e-16 | 76.6 |
| Msa0498300 | MtrunA17_Chr2g0321461 | 47.436 | 78 | 37 | 2 | 4 | 78 | 31 | 107 | 2.18e-16 | 76.6 |
| Msa0498300 | MtrunA17_Chr7g0258551 | 55.932 | 59 | 26 | 0 | 17 | 75 | 210 | 268 | 3.51e-16 | 76.3 |
| Msa0498300 | MtrunA17_Chr2g0310011 | 61.111 | 54 | 21 | 0 | 19 | 72 | 35 | 88 | 5.17e-16 | 75.5 |
| Msa0498300 | MtrunA17_Chr1g0175081 | 41.176 | 85 | 47 | 1 | 17 | 101 | 20 | 101 | 6.35e-16 | 70.5 |
| Msa0498300 | MtrunA17_Chr2g0291021 | 60.000 | 55 | 22 | 0 | 21 | 75 | 51 | 105 | 8.77e-16 | 74.7 |
| Msa0498300 | MtrunA17_Chr1g0197171 | 61.111 | 54 | 21 | 0 | 19 | 72 | 44 | 97 | 1.19e-15 | 73.9 |
| Msa0498300 | MtrunA17_Chr4g0042451 | 45.205 | 73 | 38 | 1 | 19 | 91 | 17 | 87 | 2.64e-15 | 73.2 |
| Msa0498300 | MtrunA17_Chr7g0254981 | 47.222 | 72 | 38 | 0 | 4 | 75 | 35 | 106 | 3.12e-15 | 72.4 |
| Msa0498300 | MtrunA17_Chr2g0290991 | 59.259 | 54 | 22 | 0 | 19 | 72 | 39 | 92 | 4.66e-15 | 72.4 |
| Msa0498300 | MtrunA17_Chr1g0175091 | 54.237 | 59 | 27 | 0 | 17 | 75 | 256 | 314 | 1.05e-14 | 72.0 |
| Msa0498300 | MtrunA17_Chr1g0175071 | 59.259 | 54 | 22 | 0 | 21 | 74 | 179 | 232 | 4.43e-14 | 69.7 |
| Msa0498300 | MtrunA17_Chr7g0242521 | 50.704 | 71 | 29 | 2 | 5 | 72 | 2 | 69 | 1.12e-13 | 67.8 |
| Msa0498300 | MtrunA17_Chr4g0009901 | 51.613 | 62 | 29 | 1 | 11 | 72 | 160 | 220 | 8.02e-13 | 65.9 |
| Msa0498300 | MtrunA17_Chr4g0009991 | 53.704 | 54 | 24 | 1 | 17 | 70 | 65 | 117 | 5.65e-12 | 60.8 |
| Msa0498300 | MtrunA17_Chr4g0031961 | 50.000 | 64 | 31 | 1 | 9 | 72 | 121 | 183 | 7.61e-12 | 63.2 |
| Msa0498300 | MtrunA17_Chr7g0258531 | 53.704 | 54 | 25 | 0 | 21 | 74 | 215 | 268 | 1.18e-11 | 63.2 |
| Msa0498300 | MtrunA17_Chr1g0161431 | 55.357 | 56 | 24 | 1 | 17 | 72 | 198 | 252 | 1.30e-11 | 63.2 |
| Msa0498300 | MtrunA17_Chr4g0045361 | 50.000 | 56 | 28 | 0 | 17 | 72 | 272 | 327 | 1.58e-11 | 62.8 |
| Msa0498300 | MtrunA17_Chr2g0294911 | 53.571 | 56 | 25 | 1 | 17 | 72 | 209 | 263 | 5.21e-11 | 61.2 |
| Msa0498300 | MtrunA17_Chr1g0198601 | 45.714 | 70 | 37 | 1 | 3 | 72 | 196 | 264 | 7.28e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498300 | AT2G02060.2 | 58.228 | 79 | 33 | 0 | 4 | 82 | 14 | 92 | 1.48e-24 | 97.8 |
| Msa0498300 | AT2G02060.1 | 58.228 | 79 | 33 | 0 | 4 | 82 | 14 | 92 | 1.48e-24 | 97.8 |
| Msa0498300 | AT2G40260.1 | 62.162 | 74 | 27 | 1 | 3 | 75 | 65 | 138 | 5.61e-24 | 98.6 |
| Msa0498300 | AT4G04605.1 | 61.538 | 65 | 25 | 0 | 11 | 75 | 6 | 70 | 2.75e-23 | 93.6 |
| Msa0498300 | AT1G14600.1 | 58.108 | 74 | 31 | 0 | 2 | 75 | 6 | 79 | 2.86e-23 | 94.4 |
| Msa0498300 | AT2G38300.1 | 55.696 | 79 | 31 | 1 | 7 | 81 | 42 | 120 | 5.06e-23 | 95.1 |
| Msa0498300 | AT2G42660.1 | 61.538 | 65 | 25 | 0 | 11 | 75 | 42 | 106 | 7.55e-23 | 93.2 |
| Msa0498300 | AT4G04555.1 | 58.209 | 67 | 28 | 0 | 11 | 77 | 6 | 72 | 1.24e-19 | 80.9 |
| Msa0498300 | AT4G04580.1 | 55.385 | 65 | 29 | 0 | 11 | 75 | 6 | 70 | 1.89e-19 | 82.0 |
| Msa0498300 | AT2G20400.1 | 38.400 | 125 | 73 | 2 | 21 | 143 | 233 | 355 | 5.45e-18 | 81.6 |
| Msa0498300 | AT4G28610.1 | 56.140 | 57 | 25 | 0 | 19 | 75 | 225 | 281 | 7.87e-18 | 81.3 |
| Msa0498300 | AT5G42630.2 | 55.172 | 58 | 26 | 0 | 18 | 75 | 104 | 161 | 1.05e-17 | 78.6 |
| Msa0498300 | AT5G42630.1 | 55.172 | 58 | 26 | 0 | 18 | 75 | 104 | 161 | 1.59e-17 | 79.3 |
| Msa0498300 | AT5G18240.2 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 2.42e-17 | 79.7 |
| Msa0498300 | AT5G18240.3 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 2.42e-17 | 79.7 |
| Msa0498300 | AT1G32240.2 | 56.897 | 58 | 25 | 0 | 18 | 75 | 212 | 269 | 2.43e-17 | 79.7 |
| Msa0498300 | AT1G32240.1 | 56.897 | 58 | 25 | 0 | 18 | 75 | 212 | 269 | 2.54e-17 | 79.7 |
| Msa0498300 | AT5G18240.5 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 2.82e-17 | 79.7 |
| Msa0498300 | AT5G18240.1 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 2.88e-17 | 79.7 |
| Msa0498300 | AT5G18240.4 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 2.88e-17 | 79.7 |
| Msa0498300 | AT5G45580.1 | 46.429 | 84 | 41 | 1 | 19 | 98 | 7 | 90 | 4.07e-17 | 77.8 |
| Msa0498300 | AT2G01060.1 | 56.716 | 67 | 28 | 1 | 9 | 75 | 6 | 71 | 4.57e-17 | 78.2 |
| Msa0498300 | AT5G45580.2 | 46.429 | 84 | 41 | 1 | 19 | 98 | 23 | 106 | 4.75e-17 | 77.8 |
| Msa0498300 | AT5G16560.1 | 56.897 | 58 | 25 | 0 | 18 | 75 | 218 | 275 | 4.84e-17 | 79.0 |
| Msa0498300 | AT4G17695.1 | 51.724 | 58 | 28 | 0 | 18 | 75 | 163 | 220 | 9.64e-17 | 77.8 |
| Msa0498300 | AT4G13640.1 | 61.111 | 54 | 21 | 0 | 19 | 72 | 37 | 90 | 1.00e-16 | 77.4 |
| Msa0498300 | AT2G20400.2 | 38.095 | 126 | 73 | 3 | 21 | 143 | 233 | 356 | 1.08e-16 | 78.2 |
| Msa0498300 | AT4G13640.2 | 61.111 | 54 | 21 | 0 | 19 | 72 | 37 | 90 | 1.13e-16 | 77.0 |
| Msa0498300 | AT3G04030.1 | 52.381 | 63 | 27 | 1 | 19 | 78 | 45 | 107 | 1.43e-16 | 77.8 |
| Msa0498300 | AT3G24120.1 | 61.111 | 54 | 21 | 0 | 19 | 72 | 41 | 94 | 1.48e-16 | 76.6 |
| Msa0498300 | AT3G24120.2 | 61.111 | 54 | 21 | 0 | 19 | 72 | 41 | 94 | 1.50e-16 | 76.6 |
| Msa0498300 | AT3G04030.3 | 52.381 | 63 | 27 | 1 | 19 | 78 | 45 | 107 | 1.73e-16 | 77.4 |
| Msa0498300 | AT1G79430.2 | 38.346 | 133 | 59 | 3 | 19 | 138 | 34 | 156 | 1.86e-16 | 77.0 |
| Msa0498300 | AT3G12730.1 | 59.259 | 54 | 22 | 0 | 19 | 72 | 23 | 76 | 5.06e-16 | 74.3 |
| Msa0498300 | AT5G29000.4 | 48.571 | 70 | 35 | 1 | 6 | 75 | 219 | 287 | 1.78e-15 | 73.9 |
| Msa0498300 | AT3G04450.1 | 47.143 | 70 | 36 | 1 | 17 | 86 | 237 | 305 | 2.05e-15 | 74.7 |
| Msa0498300 | AT3G04450.4 | 47.143 | 70 | 36 | 1 | 17 | 86 | 197 | 265 | 2.36e-15 | 74.3 |
| Msa0498300 | AT3G04450.2 | 47.143 | 70 | 36 | 1 | 17 | 86 | 197 | 265 | 2.36e-15 | 74.3 |
| Msa0498300 | AT5G29000.1 | 48.571 | 70 | 35 | 1 | 6 | 75 | 176 | 244 | 2.74e-15 | 73.9 |
| Msa0498300 | AT5G29000.3 | 48.571 | 70 | 35 | 1 | 6 | 75 | 176 | 244 | 2.74e-15 | 73.9 |
| Msa0498300 | AT5G29000.2 | 48.571 | 70 | 35 | 1 | 6 | 75 | 219 | 287 | 2.76e-15 | 73.9 |
| Msa0498300 | AT3G04450.3 | 50.847 | 59 | 28 | 1 | 17 | 75 | 237 | 294 | 3.49e-15 | 73.2 |
| Msa0498300 | AT3G13040.3 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 1.15e-14 | 72.4 |
| Msa0498300 | AT3G13040.1 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 1.15e-14 | 72.4 |
| Msa0498300 | AT3G13040.2 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 1.15e-14 | 72.4 |
| Msa0498300 | AT5G06800.3 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 1.32e-14 | 71.2 |
| Msa0498300 | AT2G06020.1 | 44.928 | 69 | 34 | 1 | 14 | 78 | 81 | 149 | 1.46e-14 | 71.2 |
| Msa0498300 | AT5G06800.2 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 2.80e-14 | 71.2 |
| Msa0498300 | AT5G06800.1 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 2.81e-14 | 70.9 |
| Msa0498300 | AT1G69580.1 | 50.000 | 54 | 27 | 0 | 19 | 72 | 34 | 87 | 1.00e-13 | 69.3 |
| Msa0498300 | AT1G69580.2 | 50.000 | 54 | 27 | 0 | 19 | 72 | 34 | 87 | 1.01e-13 | 69.3 |
| Msa0498300 | AT3G04030.2 | 49.206 | 63 | 28 | 2 | 19 | 78 | 45 | 106 | 1.25e-13 | 69.3 |
| Msa0498300 | AT5G44190.1 | 55.357 | 56 | 24 | 1 | 18 | 73 | 146 | 200 | 1.23e-11 | 63.5 |
| Msa0498300 | AT5G44190.2 | 55.357 | 56 | 24 | 1 | 18 | 73 | 146 | 200 | 1.54e-11 | 63.2 |
| Msa0498300 | AT3G62670.1 | 46.970 | 66 | 31 | 1 | 17 | 78 | 209 | 274 | 3.08e-11 | 62.4 |
| Msa0498300 | AT5G58080.1 | 52.727 | 55 | 25 | 1 | 18 | 72 | 193 | 246 | 3.43e-11 | 62.4 |
Find 42 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTATTTGTCGTATT+TGG | 0.138762 | 3_4:-34163320 | None:intergenic |
| GATAATGTTATGTTATATTA+AGG | 0.171825 | 3_4:+34163472 | Msa0498300:three_prime_UTR |
| TTACCTTTGGGGTGAACAAC+TGG | 0.338441 | 3_4:-34160743 | None:intergenic |
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3_4:-34158119 | None:intergenic |
| ATAATGTTATGTTATATTAA+GGG | 0.399609 | 3_4:+34163473 | Msa0498300:three_prime_UTR |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3_4:-34157779 | None:intergenic |
| TCTAATAAGACTATAATGAT+AGG | 0.417548 | 3_4:-34163451 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3_4:+34157800 | Msa0498300:CDS |
| TTATATATATTCAAATTGAT+AGG | 0.433288 | 3_4:-34163394 | None:intergenic |
| AACTATTCTTGCACCAACAC+TGG | 0.497047 | 3_4:+34160681 | Msa0498300:CDS |
| TGGTAGATTTAGATATTTGT+TGG | 0.497497 | 3_4:-34163231 | None:intergenic |
| TCATTATTATGATCTAAATC+AGG | 0.507909 | 3_4:+34162264 | Msa0498300:CDS |
| AGTTTATATAATCTCTCCCA+TGG | 0.511824 | 3_4:-34163367 | None:intergenic |
| AACAATAATTCTAAGAGAAG+TGG | 0.514149 | 3_4:+34157710 | Msa0498300:CDS |
| CCAGTGGTGCATAGTGATCA+AGG | 0.520200 | 3_4:+34163278 | Msa0498300:CDS |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3_4:+34158131 | Msa0498300:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3_4:+34157753 | Msa0498300:CDS |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3_4:+34158130 | Msa0498300:CDS |
| GGTGAACAACTGGAGCAGAT+TGG | 0.536299 | 3_4:-34160733 | None:intergenic |
| CAGTTCTCTATTAATTCCAG+TGG | 0.540686 | 3_4:+34163262 | Msa0498300:CDS |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3_4:-34157761 | None:intergenic |
| TGGGAGAGATTATATAAACT+TGG | 0.542403 | 3_4:+34163370 | Msa0498300:CDS |
| CCTTGATCACTATGCACCAC+TGG | 0.550818 | 3_4:-34163278 | None:intergenic |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3_4:+34158166 | Msa0498300:CDS |
| AATAGAGAACTGAAAGGGAA+TGG | 0.559124 | 3_4:-34163251 | None:intergenic |
| AGAAAGCATGCACTTGACTC+AGG | 0.560531 | 3_4:-34163170 | None:intergenic |
| TCTAGTTCTATAAAATCCCA+TGG | 0.570838 | 3_4:+34163350 | Msa0498300:CDS |
| GAATTAATAGAGAACTGAAA+GGG | 0.578478 | 3_4:-34163256 | None:intergenic |
| GGAATTAATAGAGAACTGAA+AGG | 0.580222 | 3_4:-34163257 | None:intergenic |
| TTTGATAAAATTTACCTTTG+GGG | 0.582723 | 3_4:-34160754 | None:intergenic |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3_4:-34157766 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3_4:+34157803 | Msa0498300:CDS |
| GCTCCAGTTGTTCACCCCAA+AGG | 0.588268 | 3_4:+34160740 | Msa0498300:CDS |
| ACAATACAAGACAAACAGAA+AGG | 0.591808 | 3_4:-34163523 | None:intergenic |
| GTTTATATAATCTCTCCCAT+GGG | 0.598304 | 3_4:-34163366 | None:intergenic |
| ACCAACACTGGAAGAAAACA+AGG | 0.606646 | 3_4:+34160693 | Msa0498300:CDS |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3_4:+34157760 | Msa0498300:CDS |
| TTAGATGTACAGGAACGTGA+AGG | 0.615592 | 3_4:+34160654 | Msa0498300:intron |
| TAGATGTACAGGAACGTGAA+GGG | 0.615844 | 3_4:+34160655 | Msa0498300:intron |
| TAGGTATTAATACATGTGAA+AGG | 0.618651 | 3_4:-34163432 | None:intergenic |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3_4:+34158132 | Msa0498300:CDS |
| CTAGTTCTATAAAATCCCAT+GGG | 0.658747 | 3_4:+34163351 | Msa0498300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATACTATATCAAA+TGG | - | chr3_4:34159047-34159066 | None:intergenic | 10.0% |
| !! | ATATTAAATACTATATCAAA+TGG | - | chr3_4:34159047-34159066 | None:intergenic | 10.0% |
| !! | TTATTATATGATATCAATAT+AGG | - | chr3_4:34159498-34159517 | None:intergenic | 10.0% |
| !!! | TATTATATACATTTTTTTAG+AGG | - | chr3_4:34160510-34160529 | None:intergenic | 10.0% |
| !!! | TTTTTATTCAAAAAATCAAA+TGG | + | chr3_4:34160784-34160803 | Msa0498300:intron | 10.0% |
| !! | AATATTCTATTAAATTAGTA+AGG | + | chr3_4:34161619-34161638 | Msa0498300:intron | 10.0% |
| !! | ATATTCTATTAAATTAGTAA+GGG | + | chr3_4:34161620-34161639 | Msa0498300:intron | 10.0% |
| !!! | AATTGTCTTTTTTTTTTTTT+TGG | - | chr3_4:34161757-34161776 | None:intergenic | 10.0% |
| !!! | TTATTTTTATTTCATTTTAG+AGG | + | chr3_4:34161966-34161985 | Msa0498300:intron | 10.0% |
| !!! | TATTTTTATTTCATTTTAGA+GGG | + | chr3_4:34161967-34161986 | Msa0498300:intron | 10.0% |
| !!! | TTTGAATTGATTTTTTTTTA+AGG | - | chr3_4:34162459-34162478 | None:intergenic | 10.0% |
| !!! | TTGAATTGATTTTTTTTTTT+GGG | - | chr3_4:34163055-34163074 | None:intergenic | 10.0% |
| !!! | TTTGAATTGATTTTTTTTTT+TGG | - | chr3_4:34163056-34163075 | None:intergenic | 10.0% |
| !! | TTATATATATTCAAATTGAT+AGG | - | chr3_4:34163397-34163416 | None:intergenic | 10.0% |
| !! | ATAATGTTATGTTATATTAA+GGG | + | chr3_4:34163473-34163492 | Msa0498300:three_prime_UTR | 10.0% |
| !! | ATTATGTATAAGTATTAAGA+CGG | + | chr3_4:34158031-34158050 | Msa0498300:intron | 15.0% |
| !! | TTGTATATATTCTAATAATG+AGG | - | chr3_4:34158249-34158268 | None:intergenic | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | + | chr3_4:34158402-34158421 | Msa0498300:intron | 15.0% |
| !!! | AAATGCATTTTAAAATAATC+TGG | - | chr3_4:34159665-34159684 | None:intergenic | 15.0% |
| !!! | ACCAATTTTTACTTATATTT+TGG | + | chr3_4:34160089-34160108 | Msa0498300:intron | 15.0% |
| !!! | CCAATTTTTACTTATATTTT+GGG | + | chr3_4:34160090-34160109 | Msa0498300:intron | 15.0% |
| !!! | TTTTCATTCACTTTTTTATT+AGG | + | chr3_4:34160233-34160252 | Msa0498300:intron | 15.0% |
| !! | ATTTGATAAAATTTACCTTT+GGG | - | chr3_4:34160758-34160777 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTGATATGAT+AGG | + | chr3_4:34161271-34161290 | Msa0498300:intron | 15.0% |
| !!! | GTACAAAATTGAATTTTATT+AGG | + | chr3_4:34161570-34161589 | Msa0498300:intron | 15.0% |
| !!! | ATCTAAAATTATTTTAAAGG+TGG | - | chr3_4:34161647-34161666 | None:intergenic | 15.0% |
| !!! | GAGATCTAAAATTATTTTAA+AGG | - | chr3_4:34161650-34161669 | None:intergenic | 15.0% |
| !! | GTAGTAAAATTATTTAGATT+AGG | - | chr3_4:34161852-34161871 | None:intergenic | 15.0% |
| !!! | ACATTTTCCTATTTTATATT+AGG | + | chr3_4:34162366-34162385 | Msa0498300:intron | 15.0% |
| !!! | AAACTTTTCCTTAAAAAAAA+AGG | + | chr3_4:34162448-34162467 | Msa0498300:intron | 15.0% |
| !!! | AACTTTTCCTTAAAAAAAAA+GGG | + | chr3_4:34162449-34162468 | Msa0498300:intron | 15.0% |
| !!! | TAATTAACCCTTTTTTTTTA+AGG | - | chr3_4:34162503-34162522 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr3_4:34162981-34163000 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr3_4:34162759-34162778 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr3_4:34162890-34162909 | Msa0498300:intron | 15.0% |
| !! | GATAATGTTATGTTATATTA+AGG | + | chr3_4:34163472-34163491 | Msa0498300:three_prime_UTR | 15.0% |
| !!! | ATGATCATCATGTTTTATAT+AGG | + | chr3_4:34157848-34157867 | Msa0498300:intron | 20.0% |
| !!! | TGATCATCATGTTTTATATA+GGG | + | chr3_4:34157849-34157868 | Msa0498300:intron | 20.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | - | chr3_4:34157930-34157949 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCTTTCAATCA+TGG | + | chr3_4:34157979-34157998 | Msa0498300:intron | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | - | chr3_4:34158122-34158141 | None:intergenic | 20.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | - | chr3_4:34158233-34158252 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | + | chr3_4:34158323-34158342 | Msa0498300:intron | 20.0% |
| !!! | AACATATTTTTGATAGACTA+TGG | + | chr3_4:34158364-34158383 | Msa0498300:intron | 20.0% |
| !!! | TTCTTTTCATAATGAAATCA+TGG | + | chr3_4:34158472-34158491 | Msa0498300:intron | 20.0% |
| !!! | TCTTTTCATAATGAAATCAT+GGG | + | chr3_4:34158473-34158492 | Msa0498300:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | - | chr3_4:34158630-34158649 | None:intergenic | 20.0% |
| !! | CAATACCTTAATTACATTAA+GGG | - | chr3_4:34158826-34158845 | None:intergenic | 20.0% |
| !! | TGATATGAAAATCTGTATAT+CGG | - | chr3_4:34158855-34158874 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | + | chr3_4:34159125-34159144 | Msa0498300:intron | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | - | chr3_4:34159157-34159176 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | + | chr3_4:34159125-34159144 | Msa0498300:intron | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | - | chr3_4:34159157-34159176 | None:intergenic | 20.0% |
| !!! | AAAACATTTTTGTTTCAACA+CGG | + | chr3_4:34159392-34159411 | Msa0498300:intron | 20.0% |
| !!! | CTCTAACACTTATTTTTTAT+TGG | + | chr3_4:34159416-34159435 | Msa0498300:intron | 20.0% |
| !!! | TTATCACTCCTATTTTTTAA+TGG | + | chr3_4:34159546-34159565 | Msa0498300:intron | 20.0% |
| !! | AAACAAATACATGATTACAT+TGG | + | chr3_4:34159636-34159655 | Msa0498300:intron | 20.0% |
| !!! | ACTTTTATATGCTTGAAAAT+CGG | + | chr3_4:34159931-34159950 | Msa0498300:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | - | chr3_4:34160011-34160030 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | - | chr3_4:34160012-34160031 | None:intergenic | 20.0% |
| !! | TCAACAAAAGTTAATATATC+TGG | - | chr3_4:34160070-34160089 | None:intergenic | 20.0% |
| !! | CCCAAAATATAAGTAAAAAT+TGG | - | chr3_4:34160093-34160112 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATATTTTGGGA+CGG | + | chr3_4:34160094-34160113 | Msa0498300:intron | 20.0% |
| !!! | TATATGTTACATTCTTGTTT+AGG | + | chr3_4:34160123-34160142 | Msa0498300:intron | 20.0% |
| !! | AAGTATATGTTACCAAAAAA+AGG | + | chr3_4:34160149-34160168 | Msa0498300:intron | 20.0% |
| !!! | TCTAATATTCACTCTTTTAT+TGG | - | chr3_4:34160334-34160353 | None:intergenic | 20.0% |
| !! | TTTCTGAACGAAATAATTTA+TGG | + | chr3_4:34160461-34160480 | Msa0498300:intron | 20.0% |
| !! | TTTGATAAAATTTACCTTTG+GGG | - | chr3_4:34160757-34160776 | None:intergenic | 20.0% |
| !! | CATTTGATAAAATTTACCTT+TGG | - | chr3_4:34160759-34160778 | None:intergenic | 20.0% |
| !!! | CAAAGGTAAATTTTATCAAA+TGG | + | chr3_4:34160757-34160776 | Msa0498300:intron | 20.0% |
| !! | ATGTTAAGCAAAGTAAAATA+AGG | - | chr3_4:34161139-34161158 | None:intergenic | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | - | chr3_4:34161505-34161524 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | + | chr3_4:34161505-34161524 | Msa0498300:intron | 20.0% |
| !!! | AACATCACAAATTTTTTCAA+AGG | + | chr3_4:34161528-34161547 | Msa0498300:intron | 20.0% |
| !!! | TCTTTTTATTTTAGGAAAGA+GGG | - | chr3_4:34161690-34161709 | None:intergenic | 20.0% |
| !!! | ATCTTTTTATTTTAGGAAAG+AGG | - | chr3_4:34161691-34161710 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTTAGGTATG+TGG | - | chr3_4:34161939-34161958 | None:intergenic | 20.0% |
| !! | AAGGGATAATTGAAAAATTT+AGG | - | chr3_4:34161946-34161965 | None:intergenic | 20.0% |
| !! | ATGAAAATCAATCAAAGAAA+TGG | - | chr3_4:34162044-34162063 | None:intergenic | 20.0% |
| !!! | TCATCAATCTTTTTTTCTTT+AGG | + | chr3_4:34162079-34162098 | Msa0498300:intron | 20.0% |
| !! | TCATTATTATGATCTAAATC+AGG | + | chr3_4:34162264-34162283 | Msa0498300:CDS | 20.0% |
| !! | GTTTAAGAACATTAAAAGTT+AGG | - | chr3_4:34162332-34162351 | None:intergenic | 20.0% |
| !! | AAGTTTGAATTGATAAAAAG+AGG | - | chr3_4:34162434-34162453 | None:intergenic | 20.0% |
| !!! | TTTTTAAGGAAAAGTTTGAA+TGG | - | chr3_4:34162445-34162464 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr3_4:34162629-34162648 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr3_4:34162630-34162649 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr3_4:34162724-34162743 | None:intergenic | 20.0% |
| !! | TCTAATAAGACTATAATGAT+AGG | - | chr3_4:34163454-34163473 | None:intergenic | 20.0% |
| !! | AACAATAATTCTAAGAGAAG+TGG | + | chr3_4:34157710-34157729 | Msa0498300:CDS | 25.0% |
| ! | TATGAGATCTCTTAATTGAA+GGG | - | chr3_4:34157899-34157918 | None:intergenic | 25.0% |
| ! | ATATGAGATCTCTTAATTGA+AGG | - | chr3_4:34157900-34157919 | None:intergenic | 25.0% |
| !!! | TCAATCATGGTTTTAAATTG+CGG | + | chr3_4:34157992-34158011 | Msa0498300:intron | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | + | chr3_4:34158091-34158110 | Msa0498300:intron | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | - | chr3_4:34158213-34158232 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | - | chr3_4:34158229-34158248 | None:intergenic | 25.0% |
| ! | GGAATATATAGAACTAAAGT+AGG | - | chr3_4:34158435-34158454 | None:intergenic | 25.0% |
| !! | TAGTTCTATATATTCCCTTA+TGG | + | chr3_4:34158439-34158458 | Msa0498300:intron | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | - | chr3_4:34158456-34158475 | None:intergenic | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | - | chr3_4:34158457-34158476 | None:intergenic | 25.0% |
| ! | CTAATCCCTTAATGTAATTA+AGG | + | chr3_4:34158818-34158837 | Msa0498300:intron | 25.0% |
| ! | CCAATACCTTAATTACATTA+AGG | - | chr3_4:34158827-34158846 | None:intergenic | 25.0% |
| ! | CCTTAATGTAATTAAGGTAT+TGG | + | chr3_4:34158824-34158843 | Msa0498300:intron | 25.0% |
| ! | GATATGAAAATCTGTATATC+GGG | - | chr3_4:34158854-34158873 | None:intergenic | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | + | chr3_4:34159124-34159143 | Msa0498300:intron | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | + | chr3_4:34159124-34159143 | Msa0498300:intron | 25.0% |
| !!! | GATGAACATATTTTTTCAAG+AGG | + | chr3_4:34159156-34159175 | Msa0498300:intron | 25.0% |
| ! | CTTTGGTACCATTAAAAAAT+AGG | - | chr3_4:34159557-34159576 | None:intergenic | 25.0% |
| ! | TTTAATCAAGGTGAATTCTT+TGG | - | chr3_4:34159574-34159593 | None:intergenic | 25.0% |
| ! | TTATATGAAGCAATTACCAT+AGG | + | chr3_4:34159721-34159740 | Msa0498300:intron | 25.0% |
| !!! | TTTTTGCTTATATTTTGGGA+CGG | - | chr3_4:34160007-34160026 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | + | chr3_4:34160008-34160027 | Msa0498300:intron | 25.0% |
| ! | TCAACGAAAGTTAATGTATT+TGG | + | chr3_4:34160031-34160050 | Msa0498300:intron | 25.0% |
| !!! | TCTTCACTTTTTCCTTTTTT+TGG | - | chr3_4:34160164-34160183 | None:intergenic | 25.0% |
| ! | GGTAAATTAAAACTCATATG+AGG | + | chr3_4:34160254-34160273 | Msa0498300:intron | 25.0% |
| ! | CATTCTCTTAACATTATTGA+TGG | - | chr3_4:34160623-34160642 | None:intergenic | 25.0% |
| ! | AATATGAACTTCCAAAAAGT+TGG | + | chr3_4:34160897-34160916 | Msa0498300:intron | 25.0% |
| ! | ATCCAAAAAAGATTTAAAGG+TGG | - | chr3_4:34160989-34161008 | None:intergenic | 25.0% |
| !!! | ACCTTTAAATCTTTTTTGGA+TGG | + | chr3_4:34160988-34161007 | Msa0498300:intron | 25.0% |
| ! | ACCATCCAAAAAAGATTTAA+AGG | - | chr3_4:34160992-34161011 | None:intergenic | 25.0% |
| !! | AAGAAGAGATGTAATGTTTT+AGG | - | chr3_4:34161030-34161049 | None:intergenic | 25.0% |
| !!! | AGATGGACTATTATTAGTTT+TGG | - | chr3_4:34161082-34161101 | None:intergenic | 25.0% |
| ! | TCACATGCTATATATGTAAT+AGG | - | chr3_4:34161229-34161248 | None:intergenic | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | + | chr3_4:34161306-34161325 | Msa0498300:intron | 25.0% |
| ! | ACTTATTCAACAATGATAGT+TGG | - | chr3_4:34161365-34161384 | None:intergenic | 25.0% |
| ! | ACTATCATTGTTGAATAAGT+AGG | + | chr3_4:34161365-34161384 | Msa0498300:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | + | chr3_4:34161388-34161407 | Msa0498300:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | - | chr3_4:34161393-34161412 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | + | chr3_4:34161408-34161427 | Msa0498300:intron | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | + | chr3_4:34161306-34161325 | Msa0498300:intron | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | + | chr3_4:34161408-34161427 | Msa0498300:intron | 25.0% |
| !!! | TGGATGCATCTTTTTATTTT+AGG | - | chr3_4:34161698-34161717 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTAGATCATGA+AGG | - | chr3_4:34161744-34161763 | None:intergenic | 25.0% |
| !!! | TCAAAGAAATGGACTAATAT+AGG | - | chr3_4:34162033-34162052 | None:intergenic | 25.0% |
| !!! | CTTTGATTGATTTTCATTTC+TGG | + | chr3_4:34162047-34162066 | Msa0498300:intron | 25.0% |
| ! | GGTACTACCTAATATAAAAT+AGG | - | chr3_4:34162376-34162395 | None:intergenic | 25.0% |
| ! | AGGGCAAAAAAACAAAATTA+GGG | - | chr3_4:34162596-34162615 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr3_4:34162918-34162937 | Msa0498300:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr3_4:34162919-34162938 | Msa0498300:intron | 25.0% |
| ! | AAGTAAGAACTAAACTTACA+AGG | + | chr3_4:34162996-34163015 | Msa0498300:intron | 25.0% |
| ! | AATTTATTGCTATATGTTGC+AGG | + | chr3_4:34163145-34163164 | Msa0498300:intron | 25.0% |
| ! | TGGTAGATTTAGATATTTGT+TGG | - | chr3_4:34163234-34163253 | None:intergenic | 25.0% |
| ! | GAATTAATAGAGAACTGAAA+GGG | - | chr3_4:34163259-34163278 | None:intergenic | 25.0% |
| ! | TCATGATTATTTGTCGTATT+TGG | - | chr3_4:34163323-34163342 | None:intergenic | 25.0% |
| ! | TAGGTATTAATACATGTGAA+AGG | - | chr3_4:34163435-34163454 | None:intergenic | 25.0% |
| !! | ACAAAGTATTGATGAAGTTC+CGG | - | chr3_4:34157782-34157801 | None:intergenic | 30.0% |
| TTTGAATATGATGCAAGTGA+AGG | + | chr3_4:34158130-34158149 | Msa0498300:CDS | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | + | chr3_4:34158131-34158150 | Msa0498300:CDS | 30.0% | |
| ! | CTGGAGATGACTTTTAATAT+GGG | - | chr3_4:34158168-34158187 | None:intergenic | 30.0% |
| ACATGAACTATATATGTACC+TGG | - | chr3_4:34158187-34158206 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | - | chr3_4:34158214-34158233 | None:intergenic | 30.0% | |
| TATAGAACTAAAGTAGGAAC+AGG | - | chr3_4:34158429-34158448 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | + | chr3_4:34158500-34158519 | Msa0498300:intron | 30.0% | |
| ACAATTACAACAGTAGTATG+TGG | + | chr3_4:34158540-34158559 | Msa0498300:intron | 30.0% | |
| AACGTTTGTGAGATATACAT+GGG | - | chr3_4:34158595-34158614 | None:intergenic | 30.0% | |
| ! | CATTCTTTTATACGAGATGA+GGG | - | chr3_4:34158892-34158911 | None:intergenic | 30.0% |
| ! | TCATTCTTTTATACGAGATG+AGG | - | chr3_4:34158893-34158912 | None:intergenic | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | + | chr3_4:34159014-34159033 | Msa0498300:intron | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | + | chr3_4:34159014-34159033 | Msa0498300:intron | 30.0% |
| !! | TGATGAGGTGATTTTAATCA+AGG | - | chr3_4:34159586-34159605 | None:intergenic | 30.0% |
| AAGATGTGTATATCTTGATG+AGG | - | chr3_4:34159601-34159620 | None:intergenic | 30.0% | |
| TTTAGATTTCCGAACAACAT+AGG | - | chr3_4:34160375-34160394 | None:intergenic | 30.0% | |
| CAATAATGTTAAGAGAATGC+TGG | + | chr3_4:34160624-34160643 | Msa0498300:intron | 30.0% | |
| !!! | GTCCACCTTTAAATCTTTTT+TGG | + | chr3_4:34160984-34161003 | Msa0498300:intron | 30.0% |
| CAATATAGACTCCTGAAAAA+AGG | - | chr3_4:34161110-34161129 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAGGAGTCTATAT+TGG | + | chr3_4:34161108-34161127 | Msa0498300:intron | 30.0% |
| ! | GTTAACACACAGTTTTACTT+CGG | - | chr3_4:34161207-34161226 | None:intergenic | 30.0% |
| !! | AGTTGTAAAGTTGATGTATG+TGG | + | chr3_4:34161900-34161919 | Msa0498300:intron | 30.0% |
| !! | GAAAGTCTTTTGTTGTGTAA+AGG | - | chr3_4:34162226-34162245 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_4:34163012-34163031 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_4:34163011-34163030 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr3_4:34162552-34162571 | None:intergenic | 30.0% | |
| CAGGGCAAAAAAACAAAATT+AGG | - | chr3_4:34162597-34162616 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr3_4:34162856-34162875 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_4:34163011-34163030 | Msa0498300:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_4:34163012-34163031 | Msa0498300:intron | 30.0% |
| !!! | TGAATACTTGCTTTGGTTTT+AGG | - | chr3_4:34163106-34163125 | None:intergenic | 30.0% |
| TGATGTTTGAATACTTGCTT+TGG | - | chr3_4:34163113-34163132 | None:intergenic | 30.0% | |
| GGAATTAATAGAGAACTGAA+AGG | - | chr3_4:34163260-34163279 | None:intergenic | 30.0% | |
| !! | TCTAGTTCTATAAAATCCCA+TGG | + | chr3_4:34163350-34163369 | Msa0498300:CDS | 30.0% |
| !! | CTAGTTCTATAAAATCCCAT+GGG | + | chr3_4:34163351-34163370 | Msa0498300:CDS | 30.0% |
| GTTTATATAATCTCTCCCAT+GGG | - | chr3_4:34163369-34163388 | None:intergenic | 30.0% | |
| AGTTTATATAATCTCTCCCA+TGG | - | chr3_4:34163370-34163389 | None:intergenic | 30.0% | |
| TGGGAGAGATTATATAAACT+TGG | + | chr3_4:34163370-34163389 | Msa0498300:CDS | 30.0% | |
| ACAATACAAGACAAACAGAA+AGG | - | chr3_4:34163526-34163545 | None:intergenic | 30.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | + | chr3_4:34157800-34157819 | Msa0498300:CDS | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | + | chr3_4:34158132-34158151 | Msa0498300:CDS | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | - | chr3_4:34158169-34158188 | None:intergenic | 35.0% |
| CCATATTAAAAGTCATCTCC+AGG | + | chr3_4:34158166-34158185 | Msa0498300:CDS | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | + | chr3_4:34158499-34158518 | Msa0498300:intron | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | - | chr3_4:34158596-34158615 | None:intergenic | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | - | chr3_4:34158675-34158694 | None:intergenic | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | - | chr3_4:34158676-34158695 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | - | chr3_4:34158687-34158706 | None:intergenic | 35.0% | |
| AAAGTAACAACGTAGAGAAG+TGG | - | chr3_4:34158688-34158707 | None:intergenic | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | - | chr3_4:34159153-34159172 | None:intergenic | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | - | chr3_4:34159153-34159172 | None:intergenic | 35.0% | |
| TGAAGCAATTACCATAGGTT+AGG | + | chr3_4:34159726-34159745 | Msa0498300:intron | 35.0% | |
| ATTACCATAGGTTAGGTACA+TGG | + | chr3_4:34159733-34159752 | Msa0498300:intron | 35.0% | |
| TTACCATAGGTTAGGTACAT+GGG | + | chr3_4:34159734-34159753 | Msa0498300:intron | 35.0% | |
| ! | TTTTCTCTTTGTCTTTCGTC+AGG | + | chr3_4:34159818-34159837 | Msa0498300:intron | 35.0% |
| ! | TGAGATGCTATAAAAGCACA+CGG | + | chr3_4:34159875-34159894 | Msa0498300:intron | 35.0% |
| !!! | TTACTTATATTTTGGGACGG+AGG | + | chr3_4:34160097-34160116 | Msa0498300:intron | 35.0% |
| !!! | TACTTATATTTTGGGACGGA+GGG | + | chr3_4:34160098-34160117 | Msa0498300:intron | 35.0% |
| AGCACTAATCCTATGTTGTT+CGG | + | chr3_4:34160363-34160382 | Msa0498300:intron | 35.0% | |
| GGAAATCTAAAAGCCATACT+TGG | + | chr3_4:34160384-34160403 | Msa0498300:intron | 35.0% | |
| AATCACACTTACACCAAGTA+TGG | - | chr3_4:34160400-34160419 | None:intergenic | 35.0% | |
| AATGTTAAGAGAATGCTGGT+CGG | + | chr3_4:34160628-34160647 | Msa0498300:intron | 35.0% | |
| ! | GTAAGAGTTCACCAACTTTT+TGG | - | chr3_4:34160911-34160930 | None:intergenic | 35.0% |
| TAGACTCCTGAAAAAAGGTA+TGG | - | chr3_4:34161105-34161124 | None:intergenic | 35.0% | |
| CCAAAGTCTCTGATATAGTT+TGG | - | chr3_4:34161823-34161842 | None:intergenic | 35.0% | |
| CCAAACTATATCAGAGACTT+TGG | + | chr3_4:34161820-34161839 | Msa0498300:intron | 35.0% | |
| TTGATATTCCTCGATCTGAA+GGG | - | chr3_4:34162190-34162209 | None:intergenic | 35.0% | |
| ATTGATATTCCTCGATCTGA+AGG | - | chr3_4:34162191-34162210 | None:intergenic | 35.0% | |
| !! | ATGCGAAGTTCCGTTATTTT+GGG | - | chr3_4:34162304-34162323 | None:intergenic | 35.0% |
| ! | TATGCGAAGTTCCGTTATTT+TGG | - | chr3_4:34162305-34162324 | None:intergenic | 35.0% |
| ! | GTTTTGCAGCAGAATTGAAA+TGG | - | chr3_4:34162397-34162416 | None:intergenic | 35.0% |
| TGAGTAGGGATTAATACTCA+GGG | - | chr3_4:34162615-34162634 | None:intergenic | 35.0% | |
| TTGAGTAGGGATTAATACTC+AGG | - | chr3_4:34162616-34162635 | None:intergenic | 35.0% | |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | - | chr3_4:34162721-34162740 | None:intergenic | 35.0% |
| AATAGAGAACTGAAAGGGAA+TGG | - | chr3_4:34163254-34163273 | None:intergenic | 35.0% | |
| CAGTTCTCTATTAATTCCAG+TGG | + | chr3_4:34163262-34163281 | Msa0498300:CDS | 35.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | + | chr3_4:34157803-34157822 | Msa0498300:CDS | 40.0% | |
| !!! | GACGGTGAATTTTTTCGCTA+TGG | + | chr3_4:34158049-34158068 | Msa0498300:intron | 40.0% |
| CTGCAAAAAATACCCTAGAC+TGG | - | chr3_4:34158515-34158534 | None:intergenic | 40.0% | |
| AGTAACAACGTAGAGAAGTG+GGG | - | chr3_4:34158686-34158705 | None:intergenic | 40.0% | |
| !!! | TGCTTATATTTTGGGACGGA+AGG | - | chr3_4:34160003-34160022 | None:intergenic | 40.0% |
| !! | TGGTCGGTTTTTAGATGTAC+AGG | + | chr3_4:34160644-34160663 | Msa0498300:intron | 40.0% |
| TTAGATGTACAGGAACGTGA+AGG | + | chr3_4:34160654-34160673 | Msa0498300:intron | 40.0% | |
| TAGATGTACAGGAACGTGAA+GGG | + | chr3_4:34160655-34160674 | Msa0498300:intron | 40.0% | |
| AACTATTCTTGCACCAACAC+TGG | + | chr3_4:34160681-34160700 | Msa0498300:CDS | 40.0% | |
| ACCAACACTGGAAGAAAACA+AGG | + | chr3_4:34160693-34160712 | Msa0498300:CDS | 40.0% | |
| ! | CCTGAAAAAAGGTATGGAGA+TGG | - | chr3_4:34161099-34161118 | None:intergenic | 40.0% |
| !!! | CCATCTCCATACCTTTTTTC+AGG | + | chr3_4:34161096-34161115 | Msa0498300:intron | 40.0% |
| TCCATGTTAGACCTCTTCTT+TGG | + | chr3_4:34161714-34161733 | Msa0498300:intron | 40.0% | |
| CCATGTTAGACCTCTTCTTT+GGG | + | chr3_4:34161715-34161734 | Msa0498300:intron | 40.0% | |
| TCGATCTGAAGGGAAATGAA+AGG | - | chr3_4:34162180-34162199 | None:intergenic | 40.0% | |
| TTTCATTTCCCTTCAGATCG+AGG | + | chr3_4:34162179-34162198 | Msa0498300:intron | 40.0% | |
| !! | TGCGAAGTTCCGTTATTTTG+GGG | - | chr3_4:34162303-34162322 | None:intergenic | 40.0% |
| AGACCTGGATCTTCTTCTCT+TGG | + | chr3_4:34158338-34158357 | Msa0498300:intron | 45.0% | |
| AGACCAAGAGAAGAAGATCC+AGG | - | chr3_4:34158344-34158363 | None:intergenic | 45.0% | |
| ATGCCCATGTACCTAACCTA+TGG | - | chr3_4:34159740-34159759 | None:intergenic | 45.0% | |
| !!! | GCCTTGTTTTCTTCCAGTGT+TGG | - | chr3_4:34160697-34160716 | None:intergenic | 45.0% |
| !! | TTACCTTTGGGGTGAACAAC+TGG | - | chr3_4:34160746-34160765 | None:intergenic | 45.0% |
| CCCAAAGAAGAGGTCTAACA+TGG | - | chr3_4:34161718-34161737 | None:intergenic | 45.0% | |
| !! | ATGAAGGCATCCCAAAGAAG+AGG | - | chr3_4:34161728-34161747 | None:intergenic | 45.0% |
| !!! | GCGAAGTTCCGTTATTTTGG+GGG | - | chr3_4:34162302-34162321 | None:intergenic | 45.0% |
| ! | AGAAAGCATGCACTTGACTC+AGG | - | chr3_4:34163173-34163192 | None:intergenic | 45.0% |
| !! | AAAATGAAATAAAAATAAAA+GGG | - | chr3_4:34161964-34161983 | None:intergenic | 5.0% |
| !! | TAAAATGAAATAAAAATAAA+AGG | - | chr3_4:34161965-34161984 | None:intergenic | 5.0% |
| !!! | ATAAGTAATTTTTTTTTTAT+AGG | + | chr3_4:34162951-34162970 | Msa0498300:intron | 5.0% |
| !!! | TAAGTAATTTTTTTTTTATA+GGG | + | chr3_4:34162952-34162971 | Msa0498300:intron | 5.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | - | chr3_4:34157748-34157767 | None:intergenic | 50.0% |
| GGTGAACAACTGGAGCAGAT+TGG | - | chr3_4:34160736-34160755 | None:intergenic | 50.0% | |
| !!! | CCGTTATTTTGGGGGCATGA+GGG | - | chr3_4:34162294-34162313 | None:intergenic | 50.0% |
| CCCTCATGCCCCCAAAATAA+CGG | + | chr3_4:34162291-34162310 | Msa0498300:intron | 50.0% | |
| !!! | TCCGTTATTTTGGGGGCATG+AGG | - | chr3_4:34162295-34162314 | None:intergenic | 50.0% |
| CCTTGATCACTATGCACCAC+TGG | - | chr3_4:34163281-34163300 | None:intergenic | 50.0% | |
| CCAGTGGTGCATAGTGATCA+AGG | + | chr3_4:34163278-34163297 | Msa0498300:CDS | 50.0% | |
| CAAAACAGCCACGCCTTCGA+TGG | + | chr3_4:34157753-34157772 | Msa0498300:CDS | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | - | chr3_4:34157769-34157788 | None:intergenic | 55.0% | |
| GCTCCAGTTGTTCACCCCAA+AGG | + | chr3_4:34160740-34160759 | Msa0498300:CDS | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | + | chr3_4:34157760-34157779 | Msa0498300:CDS | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | - | chr3_4:34157764-34157783 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 34157677 | 34163560 | 34157677 | ID=Msa0498300;Name=Msa0498300 |
| chr3_4 | mRNA | 34157677 | 34163560 | 34157677 | ID=Msa0498300-mRNA-1;Parent=Msa0498300;Name=Msa0498300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=27|1|1|1|0.25|0.6|5|154|213 |
| chr3_4 | exon | 34157677 | 34157833 | 34157677 | ID=Msa0498300-mRNA-1:exon:7280;Parent=Msa0498300-mRNA-1 |
| chr3_4 | exon | 34158111 | 34158187 | 34158111 | ID=Msa0498300-mRNA-1:exon:7281;Parent=Msa0498300-mRNA-1 |
| chr3_4 | exon | 34160658 | 34160761 | 34160658 | ID=Msa0498300-mRNA-1:exon:7282;Parent=Msa0498300-mRNA-1 |
| chr3_4 | exon | 34162195 | 34162285 | 34162195 | ID=Msa0498300-mRNA-1:exon:7283;Parent=Msa0498300-mRNA-1 |
| chr3_4 | exon | 34163167 | 34163560 | 34163167 | ID=Msa0498300-mRNA-1:exon:7284;Parent=Msa0498300-mRNA-1 |
| chr3_4 | five_prime_UTR | 34157677 | 34157703 | 34157677 | ID=Msa0498300-mRNA-1:five_prime_utr;Parent=Msa0498300-mRNA-1 |
| chr3_4 | CDS | 34157704 | 34157833 | 34157704 | ID=Msa0498300-mRNA-1:cds;Parent=Msa0498300-mRNA-1 |
| chr3_4 | CDS | 34158111 | 34158187 | 34158111 | ID=Msa0498300-mRNA-1:cds;Parent=Msa0498300-mRNA-1 |
| chr3_4 | CDS | 34160658 | 34160761 | 34160658 | ID=Msa0498300-mRNA-1:cds;Parent=Msa0498300-mRNA-1 |
| chr3_4 | CDS | 34162195 | 34162285 | 34162195 | ID=Msa0498300-mRNA-1:cds;Parent=Msa0498300-mRNA-1 |
| chr3_4 | CDS | 34163167 | 34163406 | 34163167 | ID=Msa0498300-mRNA-1:cds;Parent=Msa0498300-mRNA-1 |
| chr3_4 | three_prime_UTR | 34163407 | 34163560 | 34163407 | ID=Msa0498300-mRNA-1:three_prime_utr;Parent=Msa0498300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
