AlfalfaGEDB | Msa0499640

M. sativa cultivar zhongmu-4 / Msa0499640

KEGG: -
GO: -
PFAM: PF02135.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499640	XP_039687709.1	92.308	39	3	0	1	39	1283	1321	2.10e-14	77.0

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499640	G7J5R6	92.308	39	3	0	1	39	1289	1327	1.01e-14	77.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0499640	TR	TAZ

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499640	MtrunA17_Chr3g0133461	92.308	39	3	0	1	39	1237	1275	2.05e-18	77.0
Msa0499640	MtrunA17_Chr3g0138411	47.126	87	9	1	1	50	1100	1186	1.67e-16	71.6
Msa0499640	MtrunA17_Chr5g0438991	82.051	39	7	0	1	39	868	906	2.45e-16	70.9
Msa0499640	MtrunA17_Chr6g0456861	75.610	41	8	1	1	39	671	711	1.26e-13	63.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 4 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCTGTTCTCTCATGCCAGT+AGG	0.676221	3_4:+38926935	Msa0499640:CDS
GAAAGTGACAAAGCAGTCGT+TGG	0.555810	3_4:+38927264	Msa0499640:CDS
TTCTTGATTTGAGAACAGTT+TGG	0.474837	3_4:-38926913	None:intergenic
TTGAGAACAGTTTGGATGAG+AGG	0.492281	3_4:-38926905	None:intergenic

Showing 1 to 4 of 4 entries

Previous1Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAATCTCTCAAATTCTCT+AGG	-	chr3_4:38927098-38927117	None:intergenic	30.0%
TTGAGAACAGTTTGGATGAG+AGG	-	chr3_4:38926908-38926927	None:intergenic	40.0%
GGTGCGAAATTCTAGTGAAT+CGG	+	chr3_4:38926956-38926975	Msa0499640:intron	40.0%
GTGCGAAATTCTAGTGAATC+GGG	+	chr3_4:38926957-38926976	Msa0499640:intron	40.0%
TGCGAAATTCTAGTGAATCG+GGG	+	chr3_4:38926958-38926977	Msa0499640:intron	40.0%
GCCAGCAGTGTAAAAAGATA+TGG	+	chr3_4:38926983-38927002	Msa0499640:intron	40.0%
CACTAGAATTTCGCACCTAC+TGG	-	chr3_4:38926953-38926972	None:intergenic	45.0%
GAAAGTGACAAAGCAGTCGT+TGG	+	chr3_4:38927264-38927283	Msa0499640:CDS	45.0%
AGCTGTTCTCTCATGCCAGT+AGG	+	chr3_4:38926935-38926954	Msa0499640:CDS	50.0%
AGTGTAGCATTCCACGGTGC+AGG	+	chr3_4:38927046-38927065	Msa0499640:intron	55.0%

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	38926841	38927303	38926841	ID=Msa0499640;Name=Msa0499640
chr3_4	mRNA	38926841	38927303	38926841	ID=Msa0499640-mRNA-1;Parent=Msa0499640;Name=Msa0499640-mRNA-1;_AED=0.44;_eAED=0.45;_QI=0\|0\|0\|1\|1\|1\|2\|0\|65
chr3_4	exon	38926841	38926956	38926841	ID=Msa0499640-mRNA-1:exon:7964;Parent=Msa0499640-mRNA-1
chr3_4	exon	38927222	38927303	38927222	ID=Msa0499640-mRNA-1:exon:7965;Parent=Msa0499640-mRNA-1
chr3_4	CDS	38926841	38926956	38926841	ID=Msa0499640-mRNA-1:cds;Parent=Msa0499640-mRNA-1
chr3_4	CDS	38927222	38927303	38927222	ID=Msa0499640-mRNA-1:cds;Parent=Msa0499640-mRNA-1

Gene Sequence	>Msa0499640 ATGGTGAAACTGCTGAACGTTTTAAAGCATGCATCTCAATGTCGTGCAGCTAATGCTGAATCTTCCTCTCATCCAAACTGTTCTCAAATCAAGAAGCTGTTCTCTCATGCCAGTAGGGATCTAAAGAAGCATGTAGAATCGAAAGCATTGCAGTTTTTGAAAGTGACAAAGCAGTCGTTGGTCAATGAATCTTTGTGA
Protein sequence	>Msa0499640 MVKLLNVLKHASQCRAANAESSSHPNCSQIKKLFSHASRDLKKHVESKALQFLKVTKQSLVNESL*